data_1CS7 # _entry.id 1CS7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1CS7 pdb_00001cs7 10.2210/pdb1cs7/pdb NDB DD0019 ? ? RCSB RCSB009523 ? ? WWPDB D_1000009523 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2001-10-19 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1CS7 _pdbx_database_status.recvd_initial_deposition_date 1999-08-17 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lewis, F.D.' 1 'Liu, X.' 2 'Wu, Y.' 3 'Miller, S.E.' 4 'Wasielewski, M.R.' 5 'Letsinger, R.L.' 6 'Sanishvili, R.' 7 'Joachimiak, A.' 8 'Tereshko, V.' 9 'Egli, M.' 10 # _citation.id primary _citation.title 'Structure and Photoinduced Electron Transfer in Exceptionally Stable Synthetic DNA Hairpins with Stilbenediether Linkers' _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 121 _citation.page_first 9905 _citation.page_last 9906 _citation.year 1999 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed -1 _citation.pdbx_database_id_DOI 10.1021/ja991934u # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lewis, F.D.' 1 ? primary 'Liu, X.' 2 ? primary 'Wu, Y.' 3 ? primary 'Miller, S.E.' 4 ? primary 'Wasielewski, M.R.' 5 ? primary 'Letsinger, R.L.' 6 ? primary 'Sanishvili, R.' 7 ? primary 'Joachimiak, A.' 8 ? primary 'Tereshko, V.' 9 ? primary 'Egli, M.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(GP*(BRU)P*TP*TP*TP*GP*(S02)*CP*AP*AP*AP*AP*C)-3'" 4098.678 4 ? ? ? ? 2 non-polymer syn 'STRONTIUM ION' 87.620 4 ? ? ? ? 3 water nat water 18.015 11 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DG)(BRU)(DT)(DT)(DT)(DG)(S02)(DC)(DA)(DA)(DA)(DA)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GUTTTGXCAAAAC _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'STRONTIUM ION' SR 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 BRU n 1 3 DT n 1 4 DT n 1 5 DT n 1 6 DG n 1 7 S02 n 1 8 DC n 1 9 DA n 1 10 DA n 1 11 DA n 1 12 DA n 1 13 DC n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BRU 'DNA linking' n "5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 Br N2 O8 P' 387.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 S02 non-polymer . 'PHOSPHORIC ACID MONO-[2-(4-{2-[4-(2-HYDROXY-ETHOXY)-CYCLOHEXYLIDENE]-ETHYLIDENE}-CYCLOHEXYLOXY) -ETHYL] ESTER' 'STILBENEDIETHER NUCLEOTIDE LINKER' 'C18 H31 O7 P' 390.408 SR non-polymer . 'STRONTIUM ION' ? 'Sr 2' 87.620 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 BRU 2 2 2 BRU BRU A . n A 1 3 DT 3 3 3 DT T A . n A 1 4 DT 4 4 4 DT T A . n A 1 5 DT 5 5 5 DT T A . n A 1 6 DG 6 6 6 DG G A . n A 1 7 S02 7 7 7 S02 S02 A . n A 1 8 DC 8 9 9 DC C A . n A 1 9 DA 9 10 10 DA A A . n A 1 10 DA 10 11 11 DA A A . n A 1 11 DA 11 12 12 DA A A . n A 1 12 DA 12 13 13 DA A A . n A 1 13 DC 13 14 14 DC C A . n B 1 1 DG 1 101 101 DG G B . n B 1 2 BRU 2 102 102 BRU BRU B . n B 1 3 DT 3 103 103 DT T B . n B 1 4 DT 4 104 104 DT T B . n B 1 5 DT 5 105 105 DT T B . n B 1 6 DG 6 106 106 DG G B . n B 1 7 S02 7 107 107 S02 S02 B . n B 1 8 DC 8 109 109 DC C B . n B 1 9 DA 9 110 110 DA A B . n B 1 10 DA 10 111 111 DA A B . n B 1 11 DA 11 112 112 DA A B . n B 1 12 DA 12 113 113 DA A B . n B 1 13 DC 13 114 114 DC C B . n C 1 1 DG 1 201 201 DG G C . n C 1 2 BRU 2 202 202 BRU BRU C . n C 1 3 DT 3 203 203 DT T C . n C 1 4 DT 4 204 204 DT T C . n C 1 5 DT 5 205 205 DT T C . n C 1 6 DG 6 206 206 DG G C . n C 1 7 S02 7 207 207 S02 S02 C . n C 1 8 DC 8 209 209 DC C C . n C 1 9 DA 9 210 210 DA A C . n C 1 10 DA 10 211 211 DA A C . n C 1 11 DA 11 212 212 DA A C . n C 1 12 DA 12 213 213 DA A C . n C 1 13 DC 13 214 214 DC C C . n D 1 1 DG 1 301 301 DG G D . n D 1 2 BRU 2 302 302 BRU BRU D . n D 1 3 DT 3 303 303 DT T D . n D 1 4 DT 4 304 304 DT T D . n D 1 5 DT 5 305 305 DT T D . n D 1 6 DG 6 306 306 DG G D . n D 1 7 S02 7 307 307 S02 S02 D . n D 1 8 DC 8 309 309 DC C D . n D 1 9 DA 9 310 310 DA A D . n D 1 10 DA 10 311 311 DA A D . n D 1 11 DA 11 312 312 DA A D . n D 1 12 DA 12 313 313 DA A D . n D 1 13 DC 13 314 314 DC C D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SR 1 402 402 SR SR A . F 2 SR 1 404 404 SR SR B . G 2 SR 1 403 403 SR SR C . H 2 SR 1 401 401 SR SR D . I 3 HOH 1 410 410 HOH TIP A . I 3 HOH 2 413 413 HOH TIP A . I 3 HOH 3 414 414 HOH TIP A . I 3 HOH 4 415 415 HOH TIP A . J 3 HOH 1 405 405 HOH TIP B . J 3 HOH 2 407 407 HOH TIP B . J 3 HOH 3 409 409 HOH TIP B . K 3 HOH 1 406 406 HOH TIP C . L 3 HOH 1 408 408 HOH TIP D . L 3 HOH 2 411 411 HOH TIP D . L 3 HOH 3 412 412 HOH TIP D . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 CNS refinement . ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # _cell.entry_id 1CS7 _cell.length_a 27.76 _cell.length_b 67.89 _cell.length_c 61.83 _cell.angle_alpha 90.0 _cell.angle_beta 96.8 _cell.angle_gamma 90.0 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CS7 _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting monoclinic _symmetry.Int_Tables_number 4 # _exptl.entry_id 1CS7 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 64.05 _exptl_crystal.density_Matthews 3.42 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.3 _exptl_crystal_grow.pdbx_details 'OLIGONUCLEOTIDE, SRCL2, NA-CACODYLATE BUFFER, 2-METHYL-2,4-PENTANEDIOL, pH 6.3, VAPOR DIFFUSION, HANGING DROP at 298K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 SRCL2 ? ? ? 1 2 1 'SODIUM CACODYLATE BUFFER' ? ? ? 1 3 1 MPD ? ? ? 1 4 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type APS-1 _diffrn_detector.pdbx_collection_date 1999-02-06 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1CS7 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 30.0 _reflns.d_resolution_high 3.15 _reflns.number_obs 3434 _reflns.number_all 3434 _reflns.percent_possible_obs 97.1 _reflns.pdbx_Rmerge_I_obs 0.0970000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 3.15 _reflns_shell.d_res_low 3.26 _reflns_shell.percent_possible_all 99.0 _reflns_shell.Rmerge_I_obs 0.0950000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1CS7 _refine.ls_number_reflns_obs 2864 _refine.ls_number_reflns_all 3046 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.5 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.0 _refine.ls_d_res_high 3.2 _refine.ls_percent_reflns_obs 80.1 _refine.ls_R_factor_obs 0.2570000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2570000 _refine.ls_R_factor_R_free 0.2660000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 7 _refine.ls_number_reflns_R_free 202 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'PARKINSON et al.' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1072 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 11 _refine_hist.number_atoms_total 1087 _refine_hist.d_res_high 3.2 _refine_hist.d_res_low 8.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.010 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.71 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1CS7 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1CS7 _struct.title 'SYNTHETIC DNA HAIRPIN WITH STILBENEDIETHER LINKER' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1CS7 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DNA HAIRPIN, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1CS7 _struct_ref.pdbx_db_accession 1CS7 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1CS7 A 1 ? 13 ? 1CS7 1 ? 14 ? 1 14 2 1 1CS7 B 1 ? 13 ? 1CS7 101 ? 114 ? 101 114 3 1 1CS7 C 1 ? 13 ? 1CS7 201 ? 214 ? 201 214 4 1 1CS7 D 1 ? 13 ? 1CS7 301 ? 314 ? 301 314 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 3 author_defined_assembly ? monomeric 1 4 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,E,I 2 1 B,F,J 3 1 C,G,K 4 1 D,H,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_biol.id _struct_biol.pdbx_parent_biol_id _struct_biol.details 1 ? ? 2 ? ? 3 ? ? 4 ? ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 1 "O3'" ? ? ? 1_555 A BRU 2 P ? ? A DG 1 A BRU 2 1_555 ? ? ? ? ? ? ? 1.622 ? ? covale2 covale both ? A BRU 2 "O3'" ? ? ? 1_555 A DT 3 P ? ? A BRU 2 A DT 3 1_555 ? ? ? ? ? ? ? 1.599 ? ? covale3 covale both ? A DG 6 "O3'" ? ? ? 1_555 A S02 7 P ? ? A DG 6 A S02 7 1_555 ? ? ? ? ? ? ? 1.597 ? ? covale4 covale one ? A S02 7 "O3'" ? ? ? 1_555 A DC 8 P ? ? A S02 7 A DC 9 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale5 covale both ? B DG 1 "O3'" ? ? ? 1_555 B BRU 2 P ? ? B DG 101 B BRU 102 1_555 ? ? ? ? ? ? ? 1.586 ? ? covale6 covale both ? B BRU 2 "O3'" ? ? ? 1_555 B DT 3 P ? ? B BRU 102 B DT 103 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale7 covale both ? B DG 6 "O3'" ? ? ? 1_555 B S02 7 P ? ? B DG 106 B S02 107 1_555 ? ? ? ? ? ? ? 1.590 ? ? covale8 covale one ? B S02 7 "O3'" ? ? ? 1_555 B DC 8 P ? ? B S02 107 B DC 109 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale9 covale both ? C DG 1 "O3'" ? ? ? 1_555 C BRU 2 P ? ? C DG 201 C BRU 202 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale10 covale both ? C BRU 2 "O3'" ? ? ? 1_555 C DT 3 P ? ? C BRU 202 C DT 203 1_555 ? ? ? ? ? ? ? 1.595 ? ? covale11 covale both ? C DG 6 "O3'" ? ? ? 1_555 C S02 7 P ? ? C DG 206 C S02 207 1_555 ? ? ? ? ? ? ? 1.570 ? ? covale12 covale one ? C S02 7 "O3'" ? ? ? 1_555 C DC 8 P ? ? C S02 207 C DC 209 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale13 covale both ? D DG 1 "O3'" ? ? ? 1_555 D BRU 2 P ? ? D DG 301 D BRU 302 1_555 ? ? ? ? ? ? ? 1.625 ? ? covale14 covale both ? D BRU 2 "O3'" ? ? ? 1_555 D DT 3 P ? ? D BRU 302 D DT 303 1_555 ? ? ? ? ? ? ? 1.587 ? ? covale15 covale both ? D DG 6 "O3'" ? ? ? 1_555 D S02 7 P ? ? D DG 306 D S02 307 1_555 ? ? ? ? ? ? ? 1.597 ? ? covale16 covale one ? D S02 7 "O3'" ? ? ? 1_555 D DC 8 P ? ? D S02 307 D DC 309 1_555 ? ? ? ? ? ? ? 1.606 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 13 N3 ? ? A DG 1 A DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 13 O2 ? ? A DG 1 A DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 13 N4 ? ? A DG 1 A DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A BRU 2 N3 ? ? ? 1_555 A DA 12 N1 ? ? A BRU 2 A DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A BRU 2 O4 ? ? ? 1_555 A DA 12 N6 ? ? A BRU 2 A DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 3 N3 ? ? ? 1_555 A DA 11 N1 ? ? A DT 3 A DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 O4 ? ? ? 1_555 A DA 11 N6 ? ? A DT 3 A DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 4 N3 ? ? ? 1_555 A DA 10 N1 ? ? A DT 4 A DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 4 O4 ? ? ? 1_555 A DA 10 N6 ? ? A DT 4 A DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 5 N3 ? ? ? 1_555 A DA 9 N1 ? ? A DT 5 A DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 5 O4 ? ? ? 1_555 A DA 9 N6 ? ? A DT 5 A DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 6 A DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 6 A DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 6 A DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DG 1 N1 ? ? ? 1_555 B DC 13 N3 ? ? B DG 101 B DC 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DG 1 N2 ? ? ? 1_555 B DC 13 O2 ? ? B DG 101 B DC 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DG 1 O6 ? ? ? 1_555 B DC 13 N4 ? ? B DG 101 B DC 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B BRU 2 O4 ? ? ? 1_555 B DA 11 N6 ? ? B BRU 102 B DA 112 1_555 ? ? ? ? ? ? 'BRU-DA PAIR' ? ? ? hydrog19 hydrog ? ? B BRU 2 N3 ? ? ? 1_555 B DA 12 N1 ? ? B BRU 102 B DA 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B BRU 2 O4 ? ? ? 1_555 B DA 12 N6 ? ? B BRU 102 B DA 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DT 3 N3 ? ? ? 1_555 B DA 11 N1 ? ? B DT 103 B DA 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DT 3 O4 ? ? ? 1_555 B DA 11 N6 ? ? B DT 103 B DA 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DT 4 N3 ? ? ? 1_555 B DA 10 N1 ? ? B DT 104 B DA 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DT 4 O4 ? ? ? 1_555 B DA 10 N6 ? ? B DT 104 B DA 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DT 5 N3 ? ? ? 1_555 B DA 9 N1 ? ? B DT 105 B DA 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DT 5 O4 ? ? ? 1_555 B DA 9 N6 ? ? B DT 105 B DA 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DG 6 N1 ? ? ? 1_555 B DC 8 N3 ? ? B DG 106 B DC 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DG 6 N2 ? ? ? 1_555 B DC 8 O2 ? ? B DG 106 B DC 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DG 6 O6 ? ? ? 1_555 B DC 8 N4 ? ? B DG 106 B DC 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C DG 1 N1 ? ? ? 1_555 C DC 13 N3 ? ? C DG 201 C DC 214 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C DG 1 N2 ? ? ? 1_555 C DC 13 O2 ? ? C DG 201 C DC 214 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C DG 1 O6 ? ? ? 1_555 C DC 13 N4 ? ? C DG 201 C DC 214 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C BRU 2 N3 ? ? ? 1_555 C DA 12 N1 ? ? C BRU 202 C DA 213 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C BRU 2 O4 ? ? ? 1_555 C DA 12 N6 ? ? C BRU 202 C DA 213 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C DT 3 N3 ? ? ? 1_555 C DA 11 N1 ? ? C DT 203 C DA 212 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C DT 3 O4 ? ? ? 1_555 C DA 11 N6 ? ? C DT 203 C DA 212 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C DT 4 N3 ? ? ? 1_555 C DA 10 N1 ? ? C DT 204 C DA 211 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C DT 4 O4 ? ? ? 1_555 C DA 10 N6 ? ? C DT 204 C DA 211 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C DT 5 O4 ? ? ? 1_555 C DC 8 N4 ? ? C DT 205 C DC 209 1_555 ? ? ? ? ? ? 'DT-DC MISPAIR' ? ? ? hydrog40 hydrog ? ? C DT 5 N3 ? ? ? 1_555 C DA 9 N1 ? ? C DT 205 C DA 210 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C DT 5 O4 ? ? ? 1_555 C DA 9 N6 ? ? C DT 205 C DA 210 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C DG 6 N1 ? ? ? 1_555 C DC 8 N3 ? ? C DG 206 C DC 209 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C DG 6 N2 ? ? ? 1_555 C DC 8 O2 ? ? C DG 206 C DC 209 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C DG 6 O6 ? ? ? 1_555 C DC 8 N4 ? ? C DG 206 C DC 209 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? D DG 1 N1 ? ? ? 1_555 D DC 13 N3 ? ? D DG 301 D DC 314 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? D DG 1 N2 ? ? ? 1_555 D DC 13 O2 ? ? D DG 301 D DC 314 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? D DG 1 O6 ? ? ? 1_555 D DC 13 N4 ? ? D DG 301 D DC 314 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? D BRU 2 N3 ? ? ? 1_555 D DA 12 N1 ? ? D BRU 302 D DA 313 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? D BRU 2 O4 ? ? ? 1_555 D DA 12 N6 ? ? D BRU 302 D DA 313 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? D DT 3 N3 ? ? ? 1_555 D DA 11 N1 ? ? D DT 303 D DA 312 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? D DT 3 O4 ? ? ? 1_555 D DA 11 N6 ? ? D DT 303 D DA 312 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? D DT 4 N3 ? ? ? 1_555 D DA 10 N1 ? ? D DT 304 D DA 311 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? D DT 4 O4 ? ? ? 1_555 D DA 10 N6 ? ? D DT 304 D DA 311 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? D DT 5 N3 ? ? ? 1_555 D DA 9 N1 ? ? D DT 305 D DA 310 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? D DT 5 O4 ? ? ? 1_555 D DA 9 N6 ? ? D DT 305 D DA 310 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? D DG 6 N1 ? ? ? 1_555 D DC 8 N3 ? ? D DG 306 D DC 309 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? D DG 6 N2 ? ? ? 1_555 D DC 8 O2 ? ? D DG 306 D DC 309 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? D DG 6 O6 ? ? ? 1_555 D DC 8 N4 ? ? D DG 306 D DC 309 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _struct_site.id 1 _struct_site.pdbx_evidence_code ? _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues ? _struct_site.details ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "C5'" _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 DA _pdbx_validate_rmsd_angle.auth_seq_id_1 13 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C4'" _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 DA _pdbx_validate_rmsd_angle.auth_seq_id_2 13 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 DA _pdbx_validate_rmsd_angle.auth_seq_id_3 13 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 118.98 _pdbx_validate_rmsd_angle.angle_target_value 109.80 _pdbx_validate_rmsd_angle.angle_deviation 9.18 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.10 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 C4A ? A S02 7 ? PLANAR . 2 1 C4B ? A S02 7 ? PLANAR . 3 1 C4A ? B S02 107 ? PLANAR . 4 1 C4B ? B S02 107 ? PLANAR . 5 1 C4A ? C S02 207 ? PLANAR . 6 1 C4B ? C S02 207 ? PLANAR . 7 1 C4A ? D S02 307 ? PLANAR . 8 1 C4B ? D S02 307 ? PLANAR . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A BRU 2 A BRU 2 ? DU ? 2 B BRU 2 B BRU 102 ? DU ? 3 C BRU 2 C BRU 202 ? DU ? 4 D BRU 2 D BRU 302 ? DU ? # _struct_site_keywords.site_id 1 _struct_site_keywords.text COVALENT # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BRU N1 N N N 1 BRU C2 C N N 2 BRU N3 N N N 3 BRU C4 C N N 4 BRU C5 C N N 5 BRU C6 C N N 6 BRU O2 O N N 7 BRU O4 O N N 8 BRU BR BR N N 9 BRU "C1'" C N R 10 BRU "C2'" C N N 11 BRU "C3'" C N S 12 BRU "C4'" C N R 13 BRU "O3'" O N N 14 BRU "O4'" O N N 15 BRU "C5'" C N N 16 BRU "O5'" O N N 17 BRU P P N N 18 BRU OP1 O N N 19 BRU OP2 O N N 20 BRU OP3 O N N 21 BRU HN3 H N N 22 BRU H6 H N N 23 BRU "H1'" H N N 24 BRU "H2'" H N N 25 BRU "H2''" H N N 26 BRU "H3'" H N N 27 BRU "H4'" H N N 28 BRU "HO3'" H N N 29 BRU "H5'" H N N 30 BRU "H5''" H N N 31 BRU HOP2 H N N 32 BRU HOP3 H N N 33 DA OP3 O N N 34 DA P P N N 35 DA OP1 O N N 36 DA OP2 O N N 37 DA "O5'" O N N 38 DA "C5'" C N N 39 DA "C4'" C N R 40 DA "O4'" O N N 41 DA "C3'" C N S 42 DA "O3'" O N N 43 DA "C2'" C N N 44 DA "C1'" C N R 45 DA N9 N Y N 46 DA C8 C Y N 47 DA N7 N Y N 48 DA C5 C Y N 49 DA C6 C Y N 50 DA N6 N N N 51 DA N1 N Y N 52 DA C2 C Y N 53 DA N3 N Y N 54 DA C4 C Y N 55 DA HOP3 H N N 56 DA HOP2 H N N 57 DA "H5'" H N N 58 DA "H5''" H N N 59 DA "H4'" H N N 60 DA "H3'" H N N 61 DA "HO3'" H N N 62 DA "H2'" H N N 63 DA "H2''" H N N 64 DA "H1'" H N N 65 DA H8 H N N 66 DA H61 H N N 67 DA H62 H N N 68 DA H2 H N N 69 DC OP3 O N N 70 DC P P N N 71 DC OP1 O N N 72 DC OP2 O N N 73 DC "O5'" O N N 74 DC "C5'" C N N 75 DC "C4'" C N R 76 DC "O4'" O N N 77 DC "C3'" C N S 78 DC "O3'" O N N 79 DC "C2'" C N N 80 DC "C1'" C N R 81 DC N1 N N N 82 DC C2 C N N 83 DC O2 O N N 84 DC N3 N N N 85 DC C4 C N N 86 DC N4 N N N 87 DC C5 C N N 88 DC C6 C N N 89 DC HOP3 H N N 90 DC HOP2 H N N 91 DC "H5'" H N N 92 DC "H5''" H N N 93 DC "H4'" H N N 94 DC "H3'" H N N 95 DC "HO3'" H N N 96 DC "H2'" H N N 97 DC "H2''" H N N 98 DC "H1'" H N N 99 DC H41 H N N 100 DC H42 H N N 101 DC H5 H N N 102 DC H6 H N N 103 DG OP3 O N N 104 DG P P N N 105 DG OP1 O N N 106 DG OP2 O N N 107 DG "O5'" O N N 108 DG "C5'" C N N 109 DG "C4'" C N R 110 DG "O4'" O N N 111 DG "C3'" C N S 112 DG "O3'" O N N 113 DG "C2'" C N N 114 DG "C1'" C N R 115 DG N9 N Y N 116 DG C8 C Y N 117 DG N7 N Y N 118 DG C5 C Y N 119 DG C6 C N N 120 DG O6 O N N 121 DG N1 N N N 122 DG C2 C N N 123 DG N2 N N N 124 DG N3 N N N 125 DG C4 C Y N 126 DG HOP3 H N N 127 DG HOP2 H N N 128 DG "H5'" H N N 129 DG "H5''" H N N 130 DG "H4'" H N N 131 DG "H3'" H N N 132 DG "HO3'" H N N 133 DG "H2'" H N N 134 DG "H2''" H N N 135 DG "H1'" H N N 136 DG H8 H N N 137 DG H1 H N N 138 DG H21 H N N 139 DG H22 H N N 140 DT OP3 O N N 141 DT P P N N 142 DT OP1 O N N 143 DT OP2 O N N 144 DT "O5'" O N N 145 DT "C5'" C N N 146 DT "C4'" C N R 147 DT "O4'" O N N 148 DT "C3'" C N S 149 DT "O3'" O N N 150 DT "C2'" C N N 151 DT "C1'" C N R 152 DT N1 N N N 153 DT C2 C N N 154 DT O2 O N N 155 DT N3 N N N 156 DT C4 C N N 157 DT O4 O N N 158 DT C5 C N N 159 DT C7 C N N 160 DT C6 C N N 161 DT HOP3 H N N 162 DT HOP2 H N N 163 DT "H5'" H N N 164 DT "H5''" H N N 165 DT "H4'" H N N 166 DT "H3'" H N N 167 DT "HO3'" H N N 168 DT "H2'" H N N 169 DT "H2''" H N N 170 DT "H1'" H N N 171 DT H3 H N N 172 DT H71 H N N 173 DT H72 H N N 174 DT H73 H N N 175 DT H6 H N N 176 HOH O O N N 177 HOH H1 H N N 178 HOH H2 H N N 179 S02 P P N N 180 S02 O1P O N N 181 S02 O2P O N N 182 S02 O3P O N N 183 S02 "O5'" O N N 184 S02 "C5'" C N N 185 S02 "CA'" C N N 186 S02 "OB'" O N N 187 S02 C1A C N N 188 S02 C6A C N N 189 S02 C2A C N N 190 S02 C3A C N N 191 S02 C4A C N R 192 S02 C7A C N N 193 S02 C5A C N N 194 S02 C1B C N N 195 S02 C6B C N N 196 S02 C2B C N N 197 S02 C3B C N N 198 S02 C4B C N R 199 S02 C7B C N N 200 S02 C5B C N N 201 S02 "OC'" O N N 202 S02 "CD'" C N N 203 S02 "C3'" C N N 204 S02 "O3'" O N N 205 S02 HOP2 H N N 206 S02 HOP3 H N N 207 S02 "H5'1" H N N 208 S02 "H5'2" H N N 209 S02 HA1 H N N 210 S02 HA2 H N N 211 S02 H1A H N N 212 S02 H6A1 H N N 213 S02 H6A2 H N N 214 S02 H2A1 H N N 215 S02 H2A2 H N N 216 S02 H3A1 H N N 217 S02 H3A2 H N N 218 S02 H7A H N N 219 S02 H5A1 H N N 220 S02 H5A2 H N N 221 S02 H1B H N N 222 S02 H6B1 H N N 223 S02 H6B2 H N N 224 S02 H2B1 H N N 225 S02 H2B2 H N N 226 S02 H3B1 H N N 227 S02 H3B2 H N N 228 S02 H7B H N N 229 S02 H5B1 H N N 230 S02 H5B2 H N N 231 S02 "HD'1" H N N 232 S02 "HD'2" H N N 233 S02 "H3'1" H N N 234 S02 "H3'2" H N N 235 S02 "HO3'" H N N 236 SR SR SR N N 237 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BRU N1 C2 sing N N 1 BRU N1 C6 sing N N 2 BRU N1 "C1'" sing N N 3 BRU C2 N3 sing N N 4 BRU C2 O2 doub N N 5 BRU N3 C4 sing N N 6 BRU N3 HN3 sing N N 7 BRU C4 C5 sing N N 8 BRU C4 O4 doub N N 9 BRU C5 C6 doub N N 10 BRU C5 BR sing N N 11 BRU C6 H6 sing N N 12 BRU "C1'" "C2'" sing N N 13 BRU "C1'" "O4'" sing N N 14 BRU "C1'" "H1'" sing N N 15 BRU "C2'" "C3'" sing N N 16 BRU "C2'" "H2'" sing N N 17 BRU "C2'" "H2''" sing N N 18 BRU "C3'" "C4'" sing N N 19 BRU "C3'" "O3'" sing N N 20 BRU "C3'" "H3'" sing N N 21 BRU "C4'" "O4'" sing N N 22 BRU "C4'" "C5'" sing N N 23 BRU "C4'" "H4'" sing N N 24 BRU "O3'" "HO3'" sing N N 25 BRU "C5'" "O5'" sing N N 26 BRU "C5'" "H5'" sing N N 27 BRU "C5'" "H5''" sing N N 28 BRU "O5'" P sing N N 29 BRU P OP1 doub N N 30 BRU P OP2 sing N N 31 BRU P OP3 sing N N 32 BRU OP2 HOP2 sing N N 33 BRU OP3 HOP3 sing N N 34 DA OP3 P sing N N 35 DA OP3 HOP3 sing N N 36 DA P OP1 doub N N 37 DA P OP2 sing N N 38 DA P "O5'" sing N N 39 DA OP2 HOP2 sing N N 40 DA "O5'" "C5'" sing N N 41 DA "C5'" "C4'" sing N N 42 DA "C5'" "H5'" sing N N 43 DA "C5'" "H5''" sing N N 44 DA "C4'" "O4'" sing N N 45 DA "C4'" "C3'" sing N N 46 DA "C4'" "H4'" sing N N 47 DA "O4'" "C1'" sing N N 48 DA "C3'" "O3'" sing N N 49 DA "C3'" "C2'" sing N N 50 DA "C3'" "H3'" sing N N 51 DA "O3'" "HO3'" sing N N 52 DA "C2'" "C1'" sing N N 53 DA "C2'" "H2'" sing N N 54 DA "C2'" "H2''" sing N N 55 DA "C1'" N9 sing N N 56 DA "C1'" "H1'" sing N N 57 DA N9 C8 sing Y N 58 DA N9 C4 sing Y N 59 DA C8 N7 doub Y N 60 DA C8 H8 sing N N 61 DA N7 C5 sing Y N 62 DA C5 C6 sing Y N 63 DA C5 C4 doub Y N 64 DA C6 N6 sing N N 65 DA C6 N1 doub Y N 66 DA N6 H61 sing N N 67 DA N6 H62 sing N N 68 DA N1 C2 sing Y N 69 DA C2 N3 doub Y N 70 DA C2 H2 sing N N 71 DA N3 C4 sing Y N 72 DC OP3 P sing N N 73 DC OP3 HOP3 sing N N 74 DC P OP1 doub N N 75 DC P OP2 sing N N 76 DC P "O5'" sing N N 77 DC OP2 HOP2 sing N N 78 DC "O5'" "C5'" sing N N 79 DC "C5'" "C4'" sing N N 80 DC "C5'" "H5'" sing N N 81 DC "C5'" "H5''" sing N N 82 DC "C4'" "O4'" sing N N 83 DC "C4'" "C3'" sing N N 84 DC "C4'" "H4'" sing N N 85 DC "O4'" "C1'" sing N N 86 DC "C3'" "O3'" sing N N 87 DC "C3'" "C2'" sing N N 88 DC "C3'" "H3'" sing N N 89 DC "O3'" "HO3'" sing N N 90 DC "C2'" "C1'" sing N N 91 DC "C2'" "H2'" sing N N 92 DC "C2'" "H2''" sing N N 93 DC "C1'" N1 sing N N 94 DC "C1'" "H1'" sing N N 95 DC N1 C2 sing N N 96 DC N1 C6 sing N N 97 DC C2 O2 doub N N 98 DC C2 N3 sing N N 99 DC N3 C4 doub N N 100 DC C4 N4 sing N N 101 DC C4 C5 sing N N 102 DC N4 H41 sing N N 103 DC N4 H42 sing N N 104 DC C5 C6 doub N N 105 DC C5 H5 sing N N 106 DC C6 H6 sing N N 107 DG OP3 P sing N N 108 DG OP3 HOP3 sing N N 109 DG P OP1 doub N N 110 DG P OP2 sing N N 111 DG P "O5'" sing N N 112 DG OP2 HOP2 sing N N 113 DG "O5'" "C5'" sing N N 114 DG "C5'" "C4'" sing N N 115 DG "C5'" "H5'" sing N N 116 DG "C5'" "H5''" sing N N 117 DG "C4'" "O4'" sing N N 118 DG "C4'" "C3'" sing N N 119 DG "C4'" "H4'" sing N N 120 DG "O4'" "C1'" sing N N 121 DG "C3'" "O3'" sing N N 122 DG "C3'" "C2'" sing N N 123 DG "C3'" "H3'" sing N N 124 DG "O3'" "HO3'" sing N N 125 DG "C2'" "C1'" sing N N 126 DG "C2'" "H2'" sing N N 127 DG "C2'" "H2''" sing N N 128 DG "C1'" N9 sing N N 129 DG "C1'" "H1'" sing N N 130 DG N9 C8 sing Y N 131 DG N9 C4 sing Y N 132 DG C8 N7 doub Y N 133 DG C8 H8 sing N N 134 DG N7 C5 sing Y N 135 DG C5 C6 sing N N 136 DG C5 C4 doub Y N 137 DG C6 O6 doub N N 138 DG C6 N1 sing N N 139 DG N1 C2 sing N N 140 DG N1 H1 sing N N 141 DG C2 N2 sing N N 142 DG C2 N3 doub N N 143 DG N2 H21 sing N N 144 DG N2 H22 sing N N 145 DG N3 C4 sing N N 146 DT OP3 P sing N N 147 DT OP3 HOP3 sing N N 148 DT P OP1 doub N N 149 DT P OP2 sing N N 150 DT P "O5'" sing N N 151 DT OP2 HOP2 sing N N 152 DT "O5'" "C5'" sing N N 153 DT "C5'" "C4'" sing N N 154 DT "C5'" "H5'" sing N N 155 DT "C5'" "H5''" sing N N 156 DT "C4'" "O4'" sing N N 157 DT "C4'" "C3'" sing N N 158 DT "C4'" "H4'" sing N N 159 DT "O4'" "C1'" sing N N 160 DT "C3'" "O3'" sing N N 161 DT "C3'" "C2'" sing N N 162 DT "C3'" "H3'" sing N N 163 DT "O3'" "HO3'" sing N N 164 DT "C2'" "C1'" sing N N 165 DT "C2'" "H2'" sing N N 166 DT "C2'" "H2''" sing N N 167 DT "C1'" N1 sing N N 168 DT "C1'" "H1'" sing N N 169 DT N1 C2 sing N N 170 DT N1 C6 sing N N 171 DT C2 O2 doub N N 172 DT C2 N3 sing N N 173 DT N3 C4 sing N N 174 DT N3 H3 sing N N 175 DT C4 O4 doub N N 176 DT C4 C5 sing N N 177 DT C5 C7 sing N N 178 DT C5 C6 doub N N 179 DT C7 H71 sing N N 180 DT C7 H72 sing N N 181 DT C7 H73 sing N N 182 DT C6 H6 sing N N 183 HOH O H1 sing N N 184 HOH O H2 sing N N 185 S02 P O1P doub N N 186 S02 P O2P sing N N 187 S02 P O3P sing N N 188 S02 P "O5'" sing N N 189 S02 O2P HOP2 sing N N 190 S02 O3P HOP3 sing N N 191 S02 "O5'" "C5'" sing N N 192 S02 "C5'" "CA'" sing N N 193 S02 "C5'" "H5'1" sing N N 194 S02 "C5'" "H5'2" sing N N 195 S02 "CA'" "OB'" sing N N 196 S02 "CA'" HA1 sing N N 197 S02 "CA'" HA2 sing N N 198 S02 "OB'" C1A sing N N 199 S02 C1A C6A sing N N 200 S02 C1A C2A sing N N 201 S02 C1A H1A sing N N 202 S02 C6A C5A sing N N 203 S02 C6A H6A1 sing N N 204 S02 C6A H6A2 sing N N 205 S02 C2A C3A sing N N 206 S02 C2A H2A1 sing N N 207 S02 C2A H2A2 sing N N 208 S02 C3A C4A sing N N 209 S02 C3A H3A1 sing N N 210 S02 C3A H3A2 sing N N 211 S02 C4A C7A doub N N 212 S02 C4A C5A sing N N 213 S02 C7A C7B sing N N 214 S02 C7A H7A sing N N 215 S02 C5A H5A1 sing N N 216 S02 C5A H5A2 sing N N 217 S02 C1B C6B sing N N 218 S02 C1B C2B sing N N 219 S02 C1B "OC'" sing N N 220 S02 C1B H1B sing N N 221 S02 C6B C5B sing N N 222 S02 C6B H6B1 sing N N 223 S02 C6B H6B2 sing N N 224 S02 C2B C3B sing N N 225 S02 C2B H2B1 sing N N 226 S02 C2B H2B2 sing N N 227 S02 C3B C4B sing N N 228 S02 C3B H3B1 sing N N 229 S02 C3B H3B2 sing N N 230 S02 C4B C7B doub N N 231 S02 C4B C5B sing N N 232 S02 C7B H7B sing N N 233 S02 C5B H5B1 sing N N 234 S02 C5B H5B2 sing N N 235 S02 "OC'" "CD'" sing N N 236 S02 "CD'" "C3'" sing N N 237 S02 "CD'" "HD'1" sing N N 238 S02 "CD'" "HD'2" sing N N 239 S02 "C3'" "O3'" sing N N 240 S02 "C3'" "H3'1" sing N N 241 S02 "C3'" "H3'2" sing N N 242 S02 "O3'" "HO3'" sing N N 243 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1CS7 'double helix' 1CS7 'b-form double helix' 1CS7 'hairpin loop' 1CS7 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 A DC 13 1_555 -0.161 -0.070 -0.054 5.042 -7.993 0.444 1 A_DG1:DC14_A A 1 ? A 14 ? 19 1 1 A BRU 2 1_555 A DA 12 1_555 0.009 -0.135 0.517 -3.341 -14.300 -1.018 2 A_BRU2:DA13_A A 2 ? A 13 ? 20 1 1 A DT 3 1_555 A DA 11 1_555 -0.066 -0.143 0.729 -4.768 -6.098 -2.024 3 A_DT3:DA12_A A 3 ? A 12 ? 20 1 1 A DT 4 1_555 A DA 10 1_555 -0.088 -0.088 -0.040 -3.860 -13.531 -1.078 4 A_DT4:DA11_A A 4 ? A 11 ? 20 1 1 A DT 5 1_555 A DA 9 1_555 -0.020 -0.146 0.366 -8.223 -10.197 3.516 5 A_DT5:DA10_A A 5 ? A 10 ? 20 1 1 A DG 6 1_555 A DC 8 1_555 -0.158 -0.083 0.670 14.224 0.105 0.062 6 A_DG6:DC9_A A 6 ? A 9 ? 19 1 1 B DG 1 1_555 B DC 13 1_555 -0.144 -0.046 -0.178 -9.084 -5.160 -1.301 7 B_DG101:DC114_B B 101 ? B 114 ? 19 1 1 B BRU 2 1_555 B DA 12 1_555 -0.144 -0.095 0.664 -15.916 -18.051 -3.980 8 B_BRU102:DA113_B B 102 ? B 113 ? 20 1 1 B DT 3 1_555 B DA 11 1_555 -0.142 -0.088 0.398 -6.568 -23.690 -3.686 9 B_DT103:DA112_B B 103 ? B 112 ? 20 1 1 B DT 4 1_555 B DA 10 1_555 -0.104 -0.022 0.012 -4.499 -13.375 -2.482 10 B_DT104:DA111_B B 104 ? B 111 ? 20 1 1 B DT 5 1_555 B DA 9 1_555 -0.067 -0.099 -0.127 -10.138 -11.096 2.601 11 B_DT105:DA110_B B 105 ? B 110 ? 20 1 1 B DG 6 1_555 B DC 8 1_555 -0.117 -0.075 -0.053 6.209 2.143 -1.548 12 B_DG106:DC109_B B 106 ? B 109 ? 19 1 1 C DG 1 1_555 C DC 13 1_555 -0.162 -0.078 0.253 0.985 -6.738 -0.298 13 C_DG201:DC214_C C 201 ? C 214 ? 19 1 1 C BRU 2 1_555 C DA 12 1_555 -0.114 -0.037 0.574 -5.830 -9.938 -4.465 14 C_BRU202:DA213_C C 202 ? C 213 ? 20 1 1 C DT 3 1_555 C DA 11 1_555 -0.081 -0.112 0.192 -5.383 -18.709 1.618 15 C_DT203:DA212_C C 203 ? C 212 ? 20 1 1 C DT 4 1_555 C DA 10 1_555 -0.121 -0.192 0.824 -13.407 -15.180 -3.866 16 C_DT204:DA211_C C 204 ? C 211 ? 20 1 1 C DT 5 1_555 C DA 9 1_555 -0.031 -0.161 0.630 -16.416 -7.365 6.417 17 C_DT205:DA210_C C 205 ? C 210 ? 20 1 1 C DG 6 1_555 C DC 8 1_555 -0.093 -0.164 0.854 14.864 5.705 -3.692 18 C_DG206:DC209_C C 206 ? C 209 ? 19 1 1 D DG 1 1_555 D DC 13 1_555 -0.169 -0.042 -0.380 -4.282 -10.841 2.849 19 D_DG301:DC314_D D 301 ? D 314 ? 19 1 1 D BRU 2 1_555 D DA 12 1_555 0.040 -0.111 0.459 -8.273 -14.807 3.737 20 D_BRU302:DA313_D D 302 ? D 313 ? 20 1 1 D DT 3 1_555 D DA 11 1_555 -0.081 -0.099 0.384 -5.433 -17.807 2.029 21 D_DT303:DA312_D D 303 ? D 312 ? 20 1 1 D DT 4 1_555 D DA 10 1_555 -0.186 -0.060 0.377 -7.053 -12.855 -3.824 22 D_DT304:DA311_D D 304 ? D 311 ? 20 1 1 D DT 5 1_555 D DA 9 1_555 -0.011 -0.092 0.179 7.755 -15.217 -0.009 23 D_DT305:DA310_D D 305 ? D 310 ? 20 1 1 D DG 6 1_555 D DC 8 1_555 -0.081 -0.057 0.558 12.706 -9.561 -3.205 24 D_DG306:DC309_D D 306 ? D 309 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 A DC 13 1_555 A BRU 2 1_555 A DA 12 1_555 -0.420 -1.008 3.470 -3.732 -2.638 32.675 -1.292 0.055 3.563 -4.661 6.594 32.984 1 AA_DG1BRU2:DA13DC14_AA A 1 ? A 14 ? A 2 ? A 13 ? 1 A BRU 2 1_555 A DA 12 1_555 A DT 3 1_555 A DA 11 1_555 0.039 -0.787 3.276 -4.236 -6.612 36.634 -0.338 -0.629 3.338 -10.373 6.645 37.438 2 AA_BRU2DT3:DA12DA13_AA A 2 ? A 13 ? A 3 ? A 12 ? 1 A DT 3 1_555 A DA 11 1_555 A DT 4 1_555 A DA 10 1_555 -0.122 -0.107 2.947 8.544 -7.679 43.890 0.477 0.843 2.856 -10.070 -11.204 45.297 3 AA_DT3DT4:DA11DA12_AA A 3 ? A 12 ? A 4 ? A 11 ? 1 A DT 4 1_555 A DA 10 1_555 A DT 5 1_555 A DA 9 1_555 0.316 -0.249 3.397 -0.611 0.109 33.734 -0.448 -0.648 3.390 0.189 1.052 33.739 4 AA_DT4DT5:DA10DA11_AA A 4 ? A 11 ? A 5 ? A 10 ? 1 A DT 5 1_555 A DA 9 1_555 A DG 6 1_555 A DC 8 1_555 0.399 0.667 3.137 -3.685 3.156 35.368 0.650 -1.164 3.127 5.165 6.031 35.689 5 AA_DT5DG6:DC9DA10_AA A 5 ? A 10 ? A 6 ? A 9 ? 1 B DG 1 1_555 B DC 13 1_555 B BRU 2 1_555 B DA 12 1_555 -0.653 -0.914 3.393 -6.230 1.847 32.827 -1.909 0.056 3.401 3.229 10.890 33.446 6 BB_DG101BRU102:DA113DC114_BB B 101 ? B 114 ? B 102 ? B 113 ? 1 B BRU 2 1_555 B DA 12 1_555 B DT 3 1_555 B DA 11 1_555 -0.406 -0.696 2.892 -0.944 -10.649 38.127 0.116 0.499 2.983 -15.923 1.412 39.544 7 BB_BRU102DT103:DA112DA113_BB B 102 ? B 113 ? B 103 ? B 112 ? 1 B DT 3 1_555 B DA 11 1_555 B DT 4 1_555 B DA 10 1_555 0.474 -0.100 2.978 4.679 -6.743 44.043 0.435 -0.230 2.994 -8.900 -6.176 44.764 8 BB_DT103DT104:DA111DA112_BB B 103 ? B 112 ? B 104 ? B 111 ? 1 B DT 4 1_555 B DA 10 1_555 B DT 5 1_555 B DA 9 1_555 0.405 0.339 3.443 4.690 2.390 33.151 0.170 0.119 3.481 4.156 -8.156 33.555 9 BB_DT104DT105:DA110DA111_BB B 104 ? B 111 ? B 105 ? B 110 ? 1 B DT 5 1_555 B DA 9 1_555 B DG 6 1_555 B DC 8 1_555 0.288 1.245 3.463 -1.141 3.613 31.779 1.555 -0.745 3.566 6.569 2.075 31.998 10 BB_DT105DG106:DC109DA110_BB B 105 ? B 110 ? B 106 ? B 109 ? 1 C DG 1 1_555 C DC 13 1_555 C BRU 2 1_555 C DA 12 1_555 -0.276 -1.143 3.418 -1.636 -2.485 33.947 -1.532 0.195 3.499 -4.245 2.795 34.073 11 CC_DG201BRU202:DA213DC214_CC C 201 ? C 214 ? C 202 ? C 213 ? 1 C BRU 2 1_555 C DA 12 1_555 C DT 3 1_555 C DA 11 1_555 -0.035 -0.418 3.081 4.366 -3.435 35.797 -0.214 0.638 3.082 -5.548 -7.050 36.211 12 CC_BRU202DT203:DA212DA213_CC C 202 ? C 213 ? C 203 ? C 212 ? 1 C DT 3 1_555 C DA 11 1_555 C DT 4 1_555 C DA 10 1_555 -0.138 -0.344 3.355 -7.114 -2.833 42.529 -0.181 -0.533 3.350 -3.868 9.713 43.181 13 CC_DT203DT204:DA211DA212_CC C 203 ? C 212 ? C 204 ? C 211 ? 1 C DT 4 1_555 C DA 10 1_555 C DT 5 1_555 C DA 9 1_555 0.412 -0.276 3.400 3.722 -6.875 35.886 0.553 -0.118 3.417 -10.998 -5.954 36.701 14 CC_DT204DT205:DA210DA211_CC C 204 ? C 211 ? C 205 ? C 210 ? 1 C DT 5 1_555 C DA 9 1_555 C DG 6 1_555 C DC 8 1_555 -0.224 0.780 2.811 -5.686 5.121 31.104 0.596 -0.503 2.894 9.373 10.408 32.009 15 CC_DT205DG206:DC209DA210_CC C 205 ? C 210 ? C 206 ? C 209 ? 1 D DG 1 1_555 D DC 13 1_555 D BRU 2 1_555 D DA 12 1_555 -0.206 -0.923 3.312 -6.248 -1.499 33.653 -1.326 -0.658 3.332 -2.560 10.671 34.244 16 DD_DG301BRU302:DA313DC314_DD D 301 ? D 314 ? D 302 ? D 313 ? 1 D BRU 2 1_555 D DA 12 1_555 D DT 3 1_555 D DA 11 1_555 -0.502 -0.584 3.073 1.087 -5.034 40.029 -0.309 0.844 3.107 -7.317 -1.580 40.345 17 DD_BRU302DT303:DA312DA313_DD D 302 ? D 313 ? D 303 ? D 312 ? 1 D DT 3 1_555 D DA 11 1_555 D DT 4 1_555 D DA 10 1_555 0.172 -0.106 3.127 0.655 -4.958 40.812 0.364 -0.177 3.120 -7.077 -0.935 41.104 18 DD_DT303DT304:DA311DA312_DD D 303 ? D 312 ? D 304 ? D 311 ? 1 D DT 4 1_555 D DA 10 1_555 D DT 5 1_555 D DA 9 1_555 0.448 -0.227 2.964 4.891 -8.072 34.863 0.690 -0.082 2.976 -13.177 -7.984 36.079 19 DD_DT304DT305:DA310DA311_DD D 304 ? D 311 ? D 305 ? D 310 ? 1 D DT 5 1_555 D DA 9 1_555 D DG 6 1_555 D DC 8 1_555 -0.132 0.690 3.395 -1.917 21.346 31.890 -1.934 -0.067 3.227 34.423 3.091 38.267 20 DD_DT305DG306:DC309DA310_DD D 305 ? D 310 ? D 306 ? D 309 ? # _atom_sites.entry_id 1CS7 _atom_sites.fract_transf_matrix[1][1] 0.036023 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.004295 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014730 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016288 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C N O P SR # loop_