data_1CYJ # _entry.id 1CYJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.339 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1CYJ WWPDB D_1000172602 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1CYJ _pdbx_database_status.recvd_initial_deposition_date 1995-05-09 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kerfeld, C.A.' 1 'Yeates, T.O.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'The structure of chloroplast cytochrome c6 at 1.9 A resolution: evidence for functional oligomerization.' J.Mol.Biol. 250 627 647 1995 JMOBAK UK 0022-2836 0070 ? 7623381 10.1006/jmbi.1995.0404 1 'Isolation and Structural Characterization of the Chlamydomonas Reinhardtii Gene for Cytochrome C6' J.Biol.Chem. 266 15060 ? 1991 JBCHA3 US 0021-9258 0071 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kerfeld, C.A.' 1 ? primary 'Anwar, H.P.' 2 ? primary 'Interrante, R.' 3 ? primary 'Merchant, S.' 4 ? primary 'Yeates, T.O.' 5 ? 1 'Hill, K.L.' 6 ? 1 'Li, H.H.' 7 ? 1 'Singer, J.' 8 ? 1 'Merchant, S.' 9 ? # _cell.entry_id 1CYJ _cell.length_a 81.600 _cell.length_b 81.600 _cell.length_c 81.600 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CYJ _symmetry.space_group_name_H-M 'I 2 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'CYTOCHROME C6' 9810.996 1 ? ? ? ? 2 non-polymer syn 'CADMIUM ION' 112.411 4 ? ? ? ? 3 non-polymer syn 'HEME C' 618.503 1 ? ? ? ? 4 water nat water 18.015 72 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'CYTOCHROME C553' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ADLALGAQVFNGNCAACHMGGRNSVMPEKTLDKAALEQYLDGGFKVESIIYQVENGKGAMPAWADRLSEEEIQAVAEYVF KQATDAAWKY ; _entity_poly.pdbx_seq_one_letter_code_can ;ADLALGAQVFNGNCAACHMGGRNSVMPEKTLDKAALEQYLDGGFKVESIIYQVENGKGAMPAWADRLSEEEIQAVAEYVF KQATDAAWKY ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 ASP n 1 3 LEU n 1 4 ALA n 1 5 LEU n 1 6 GLY n 1 7 ALA n 1 8 GLN n 1 9 VAL n 1 10 PHE n 1 11 ASN n 1 12 GLY n 1 13 ASN n 1 14 CYS n 1 15 ALA n 1 16 ALA n 1 17 CYS n 1 18 HIS n 1 19 MET n 1 20 GLY n 1 21 GLY n 1 22 ARG n 1 23 ASN n 1 24 SER n 1 25 VAL n 1 26 MET n 1 27 PRO n 1 28 GLU n 1 29 LYS n 1 30 THR n 1 31 LEU n 1 32 ASP n 1 33 LYS n 1 34 ALA n 1 35 ALA n 1 36 LEU n 1 37 GLU n 1 38 GLN n 1 39 TYR n 1 40 LEU n 1 41 ASP n 1 42 GLY n 1 43 GLY n 1 44 PHE n 1 45 LYS n 1 46 VAL n 1 47 GLU n 1 48 SER n 1 49 ILE n 1 50 ILE n 1 51 TYR n 1 52 GLN n 1 53 VAL n 1 54 GLU n 1 55 ASN n 1 56 GLY n 1 57 LYS n 1 58 GLY n 1 59 ALA n 1 60 MET n 1 61 PRO n 1 62 ALA n 1 63 TRP n 1 64 ALA n 1 65 ASP n 1 66 ARG n 1 67 LEU n 1 68 SER n 1 69 GLU n 1 70 GLU n 1 71 GLU n 1 72 ILE n 1 73 GLN n 1 74 ALA n 1 75 VAL n 1 76 ALA n 1 77 GLU n 1 78 TYR n 1 79 VAL n 1 80 PHE n 1 81 LYS n 1 82 GLN n 1 83 ALA n 1 84 THR n 1 85 ASP n 1 86 ALA n 1 87 ALA n 1 88 TRP n 1 89 LYS n 1 90 TYR n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Chlamydomonas reinhardtii' _entity_src_nat.pdbx_ncbi_taxonomy_id 3055 _entity_src_nat.genus Chlamydomonas _entity_src_nat.species ? _entity_src_nat.strain CC124 _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle CHLOROPLAST _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CYC6_CHLRE _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P08197 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MLQLANRSVRAKAARASQSARSVSCAAAKRGADVAPLTSALAVTASILLTTGAASASAADLALGAQVFNGNCAACHMGGR NSVMPEKTLDKAALEQYLDGGFKVESIIYQVENGKGAMPAWADRLSEEEIQAVAEYVFKQATDAAWKY ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1CYJ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 90 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P08197 _struct_ref_seq.db_align_beg 59 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 148 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 90 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CD non-polymer . 'CADMIUM ION' ? 'Cd 2' 112.411 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HEC non-polymer . 'HEME C' ? 'C34 H34 Fe N4 O4' 618.503 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1CYJ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.31 _exptl_crystal.density_percent_sol 46.68 _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IIC' _diffrn_detector.pdbx_collection_date 1993-01-22 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.54 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1CYJ _reflns.observed_criterion_sigma_I 1. _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 57.6 _reflns.d_resolution_high 1.9 _reflns.number_obs 5709 _reflns.number_all ? _reflns.percent_possible_obs 78.6 _reflns.pdbx_Rmerge_I_obs 0.072 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1CYJ _refine.ls_number_reflns_obs 6412 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0. _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10. _refine.ls_d_res_high 1.9 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.187 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.187 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 21.1 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ;NO RESTRAINTS WERE PLACED ON CADMIUM IONS DURING REFINEMENT. CONSEQUENTLY THERE ARE CLOSE CONTACTS BETWEEN SOLVENT MOLECULES AND SIDE-CHAIN ATOMS INVOLVED IN CADMIUM LIGATION. FROM 2FO-FC ELECTRON DENSITY AND ITS PROXIMITY TO SOLVENT MOLECULES, THE ATOM AT POSITION 422 APPEARS TO BE AN ION. HOWEVER SINCE IT DID NOT REFINE SATISFACTORILY AS A CADMIUM ION IT WAS MODELLED AS SOLVENT, RESULTING IN CLOSE INTERMOLECULAR CONTACTS WITH SOLVENT MOLECULES 456 AND 469. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1CYJ _refine_analyze.Luzzati_coordinate_error_obs 0.23 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 684 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 47 _refine_hist.number_atoms_solvent 72 _refine_hist.number_atoms_total 803 _refine_hist.d_res_high 1.9 _refine_hist.d_res_low 10. # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.018 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.665 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it 1.5 ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it 2.5 ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it 2.0 ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it 4.0 ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1CYJ _struct.title 'CYTOCHROME C6' _struct.pdbx_descriptor 'CYTOCHROME C6, PROTOPORPHYRIN IX CONTAINING FE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1CYJ _struct_keywords.pdbx_keywords 'ELECTRON TRANSPORT PROTEIN (CYTOCHROME)' _struct_keywords.text 'PHOTOSYNTHESIS, CHLAMYDOMONAS, ELECTRON TRANSPORT PROTEIN (CYTOCHROME)' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 3 ? ASN A 13 ? LEU A 3 ASN A 13 1 ? 11 HELX_P HELX_P2 2 LYS A 33 ? TYR A 39 ? LYS A 33 TYR A 39 1 ? 7 HELX_P HELX_P3 3 VAL A 46 ? ASN A 55 ? VAL A 46 ASN A 55 1 ? 10 HELX_P HELX_P4 4 GLU A 69 ? ASP A 85 ? GLU A 69 ASP A 85 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? A CYS 14 SG ? ? ? 1_555 F HEC . CAB ? ? A CYS 14 A HEC 200 1_555 ? ? ? ? ? ? ? 1.790 ? ? covale2 covale none ? A CYS 17 SG ? ? ? 1_555 F HEC . CAC ? ? A CYS 17 A HEC 200 1_555 ? ? ? ? ? ? ? 1.760 ? ? metalc1 metalc ? ? A ASP 2 OD1 ? ? ? 1_555 C CD . CD ? ? A ASP 2 A CD 301 1_555 ? ? ? ? ? ? ? 2.860 ? ? metalc2 metalc ? ? A ASP 2 OD2 ? ? ? 1_555 C CD . CD ? ? A ASP 2 A CD 301 1_555 ? ? ? ? ? ? ? 2.263 ? ? metalc3 metalc ? ? A HIS 18 NE2 ? ? ? 1_555 F HEC . FE ? ? A HIS 18 A HEC 200 1_555 ? ? ? ? ? ? ? 1.898 ? ? metalc4 metalc ? ? A ASP 41 OD1 ? ? ? 22_445 B CD . CD ? ? A ASP 41 A CD 300 1_555 ? ? ? ? ? ? ? 2.289 ? ? metalc5 metalc ? ? A ASP 41 OD2 ? ? ? 22_445 B CD . CD ? ? A ASP 41 A CD 300 1_555 ? ? ? ? ? ? ? 2.529 ? ? metalc6 metalc ? ? A GLU 47 OE2 ? ? ? 5_456 C CD . CD ? ? A GLU 47 A CD 301 1_555 ? ? ? ? ? ? ? 2.092 ? ? metalc7 metalc ? ? A GLU 54 OE2 ? ? ? 1_555 D CD . CD ? ? A GLU 54 A CD 302 1_555 ? ? ? ? ? ? ? 2.664 ? ? metalc8 metalc ? ? A GLU 54 OE1 ? ? ? 1_555 D CD . CD ? ? A GLU 54 A CD 302 1_555 ? ? ? ? ? ? ? 2.859 ? ? metalc9 metalc ? ? A MET 60 SD ? ? ? 1_555 F HEC . FE ? ? A MET 60 A HEC 200 1_555 ? ? ? ? ? ? ? 2.392 ? ? metalc10 metalc ? ? A GLU 69 OE2 ? ? ? 1_555 D CD . CD ? ? A GLU 69 A CD 302 1_555 ? ? ? ? ? ? ? 2.615 ? ? metalc11 metalc ? ? A GLU 69 OE1 ? ? ? 1_555 D CD . CD ? ? A GLU 69 A CD 302 1_555 ? ? ? ? ? ? ? 3.009 ? ? metalc12 metalc ? ? A GLU 70 OE2 ? ? ? 9_546 E CD . CD ? ? A GLU 70 A CD 303 1_555 ? ? ? ? ? ? ? 2.927 ? ? metalc13 metalc ? ? A GLU 71 OE1 ? ? ? 1_555 B CD . CD ? ? A GLU 71 A CD 300 1_555 ? ? ? ? ? ? ? 2.461 ? ? metalc14 metalc ? ? A GLU 71 OE2 ? ? ? 1_555 B CD . CD ? ? A GLU 71 A CD 300 1_555 ? ? ? ? ? ? ? 2.408 ? ? metalc15 metalc ? ? B CD . CD ? ? ? 1_555 G HOH . O ? ? A CD 300 A HOH 421 22_445 ? ? ? ? ? ? ? 1.796 ? ? metalc16 metalc ? ? C CD . CD ? ? ? 1_555 G HOH . O ? ? A CD 301 A HOH 424 1_555 ? ? ? ? ? ? ? 2.055 ? ? metalc17 metalc ? ? C CD . CD ? ? ? 1_555 G HOH . O ? ? A CD 301 A HOH 428 5_456 ? ? ? ? ? ? ? 2.230 ? ? metalc18 metalc ? ? D CD . CD ? ? ? 1_555 G HOH . O ? ? A CD 302 A HOH 403 1_555 ? ? ? ? ? ? ? 1.890 ? ? metalc19 metalc ? ? D CD . CD ? ? ? 1_555 G HOH . O ? ? A CD 302 A HOH 412 18_445 ? ? ? ? ? ? ? 2.087 ? ? metalc20 metalc ? ? D CD . CD ? ? ? 1_555 G HOH . O ? ? A CD 302 A HOH 419 1_555 ? ? ? ? ? ? ? 1.929 ? ? metalc21 metalc ? ? E CD . CD ? ? ? 1_555 G HOH . O ? ? A CD 303 A HOH 422 1_555 ? ? ? ? ? ? ? 1.794 ? ? metalc22 metalc ? ? E CD . CD ? ? ? 1_555 G HOH . O ? ? A CD 303 A HOH 456 1_555 ? ? ? ? ? ? ? 2.844 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CD 300 ? 3 'BINDING SITE FOR RESIDUE CD A 300' AC2 Software A CD 301 ? 4 'BINDING SITE FOR RESIDUE CD A 301' AC3 Software A CD 302 ? 5 'BINDING SITE FOR RESIDUE CD A 302' AC4 Software A CD 303 ? 4 'BINDING SITE FOR RESIDUE CD A 303' AC5 Software A HEC 200 ? 15 'BINDING SITE FOR RESIDUE HEC A 200' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 ASP A 41 ? ASP A 41 . ? 22_445 ? 2 AC1 3 GLU A 71 ? GLU A 71 . ? 1_555 ? 3 AC1 3 HOH G . ? HOH A 421 . ? 22_445 ? 4 AC2 4 ASP A 2 ? ASP A 2 . ? 1_555 ? 5 AC2 4 GLU A 47 ? GLU A 47 . ? 5_456 ? 6 AC2 4 HOH G . ? HOH A 424 . ? 1_555 ? 7 AC2 4 HOH G . ? HOH A 428 . ? 5_456 ? 8 AC3 5 GLU A 54 ? GLU A 54 . ? 1_555 ? 9 AC3 5 GLU A 69 ? GLU A 69 . ? 1_555 ? 10 AC3 5 HOH G . ? HOH A 403 . ? 1_555 ? 11 AC3 5 HOH G . ? HOH A 412 . ? 18_445 ? 12 AC3 5 HOH G . ? HOH A 419 . ? 1_555 ? 13 AC4 4 GLU A 47 ? GLU A 47 . ? 1_555 ? 14 AC4 4 GLU A 70 ? GLU A 70 . ? 9_546 ? 15 AC4 4 HOH G . ? HOH A 422 . ? 1_555 ? 16 AC4 4 HOH G . ? HOH A 456 . ? 1_555 ? 17 AC5 15 CYS A 14 ? CYS A 14 . ? 1_555 ? 18 AC5 15 CYS A 17 ? CYS A 17 . ? 1_555 ? 19 AC5 15 HIS A 18 ? HIS A 18 . ? 1_555 ? 20 AC5 15 ASN A 23 ? ASN A 23 . ? 1_555 ? 21 AC5 15 VAL A 25 ? VAL A 25 . ? 1_555 ? 22 AC5 15 LYS A 29 ? LYS A 29 . ? 1_555 ? 23 AC5 15 THR A 30 ? THR A 30 . ? 1_555 ? 24 AC5 15 ALA A 35 ? ALA A 35 . ? 1_555 ? 25 AC5 15 TYR A 39 ? TYR A 39 . ? 1_555 ? 26 AC5 15 LEU A 40 ? LEU A 40 . ? 1_555 ? 27 AC5 15 GLN A 52 ? GLN A 52 . ? 1_555 ? 28 AC5 15 LYS A 57 ? LYS A 57 . ? 1_555 ? 29 AC5 15 ALA A 59 ? ALA A 59 . ? 1_555 ? 30 AC5 15 MET A 60 ? MET A 60 . ? 1_555 ? 31 AC5 15 HOH G . ? HOH A 450 . ? 1_555 ? # _database_PDB_matrix.entry_id 1CYJ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1CYJ _atom_sites.fract_transf_matrix[1][1] 0.012255 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012255 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012255 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CD FE N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA A . n A 1 2 ASP 2 2 2 ASP ASP A . n A 1 3 LEU 3 3 3 LEU LEU A . n A 1 4 ALA 4 4 4 ALA ALA A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 GLY 6 6 6 GLY GLY A . n A 1 7 ALA 7 7 7 ALA ALA A . n A 1 8 GLN 8 8 8 GLN GLN A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 PHE 10 10 10 PHE PHE A . n A 1 11 ASN 11 11 11 ASN ASN A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 ASN 13 13 13 ASN ASN A . n A 1 14 CYS 14 14 14 CYS CYS A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 CYS 17 17 17 CYS CYS A . n A 1 18 HIS 18 18 18 HIS HIS A . n A 1 19 MET 19 19 19 MET MET A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 ARG 22 22 22 ARG ARG A . n A 1 23 ASN 23 23 23 ASN ASN A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 VAL 25 25 25 VAL VAL A . n A 1 26 MET 26 26 26 MET MET A . n A 1 27 PRO 27 27 27 PRO PRO A . n A 1 28 GLU 28 28 28 GLU GLU A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 THR 30 30 30 THR THR A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 ASP 32 32 32 ASP ASP A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 ALA 35 35 35 ALA ALA A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 GLU 37 37 37 GLU GLU A . n A 1 38 GLN 38 38 38 GLN GLN A . n A 1 39 TYR 39 39 39 TYR TYR A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 ASP 41 41 41 ASP ASP A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 PHE 44 44 44 PHE PHE A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 VAL 46 46 46 VAL VAL A . n A 1 47 GLU 47 47 47 GLU GLU A . n A 1 48 SER 48 48 48 SER SER A . n A 1 49 ILE 49 49 49 ILE ILE A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 TYR 51 51 51 TYR TYR A . n A 1 52 GLN 52 52 52 GLN GLN A . n A 1 53 VAL 53 53 53 VAL VAL A . n A 1 54 GLU 54 54 54 GLU GLU A . n A 1 55 ASN 55 55 55 ASN ASN A . n A 1 56 GLY 56 56 56 GLY GLY A . n A 1 57 LYS 57 57 57 LYS LYS A . n A 1 58 GLY 58 58 58 GLY GLY A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 MET 60 60 60 MET MET A . n A 1 61 PRO 61 61 61 PRO PRO A . n A 1 62 ALA 62 62 62 ALA ALA A . n A 1 63 TRP 63 63 63 TRP TRP A . n A 1 64 ALA 64 64 64 ALA ALA A . n A 1 65 ASP 65 65 65 ASP ASP A . n A 1 66 ARG 66 66 66 ARG ARG A . n A 1 67 LEU 67 67 67 LEU LEU A . n A 1 68 SER 68 68 68 SER SER A . n A 1 69 GLU 69 69 69 GLU GLU A . n A 1 70 GLU 70 70 70 GLU GLU A . n A 1 71 GLU 71 71 71 GLU GLU A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 GLN 73 73 73 GLN GLN A . n A 1 74 ALA 74 74 74 ALA ALA A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 ALA 76 76 76 ALA ALA A . n A 1 77 GLU 77 77 77 GLU GLU A . n A 1 78 TYR 78 78 78 TYR TYR A . n A 1 79 VAL 79 79 79 VAL VAL A . n A 1 80 PHE 80 80 80 PHE PHE A . n A 1 81 LYS 81 81 81 LYS LYS A . n A 1 82 GLN 82 82 82 GLN GLN A . n A 1 83 ALA 83 83 83 ALA ALA A . n A 1 84 THR 84 84 84 THR THR A . n A 1 85 ASP 85 85 85 ASP ASP A . n A 1 86 ALA 86 86 86 ALA ALA A . n A 1 87 ALA 87 87 87 ALA ALA A . n A 1 88 TRP 88 88 88 TRP TRP A . n A 1 89 LYS 89 89 89 LYS LYS A . n A 1 90 TYR 90 90 90 TYR TYR A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD 1 300 300 CD CD A . C 2 CD 1 301 301 CD CD A . D 2 CD 1 302 302 CD CD A . E 2 CD 1 303 303 CD CD A . F 3 HEC 1 200 200 HEC HEM A . G 4 HOH 1 400 400 HOH HOH A . G 4 HOH 2 401 401 HOH HOH A . G 4 HOH 3 402 402 HOH HOH A . G 4 HOH 4 403 403 HOH HOH A . G 4 HOH 5 404 404 HOH HOH A . G 4 HOH 6 405 405 HOH HOH A . G 4 HOH 7 406 406 HOH HOH A . G 4 HOH 8 407 407 HOH HOH A . G 4 HOH 9 408 408 HOH HOH A . G 4 HOH 10 409 409 HOH HOH A . G 4 HOH 11 410 410 HOH HOH A . G 4 HOH 12 411 411 HOH HOH A . G 4 HOH 13 412 412 HOH HOH A . G 4 HOH 14 413 413 HOH HOH A . G 4 HOH 15 414 414 HOH HOH A . G 4 HOH 16 415 415 HOH HOH A . G 4 HOH 17 416 416 HOH HOH A . G 4 HOH 18 417 417 HOH HOH A . G 4 HOH 19 418 418 HOH HOH A . G 4 HOH 20 419 419 HOH HOH A . G 4 HOH 21 420 420 HOH HOH A . G 4 HOH 22 421 421 HOH HOH A . G 4 HOH 23 422 422 HOH HOH A . G 4 HOH 24 423 423 HOH HOH A . G 4 HOH 25 424 424 HOH HOH A . G 4 HOH 26 425 425 HOH HOH A . G 4 HOH 27 426 426 HOH HOH A . G 4 HOH 28 428 428 HOH HOH A . G 4 HOH 29 429 429 HOH HOH A . G 4 HOH 30 430 430 HOH HOH A . G 4 HOH 31 431 431 HOH HOH A . G 4 HOH 32 432 432 HOH HOH A . G 4 HOH 33 433 433 HOH HOH A . G 4 HOH 34 435 435 HOH HOH A . G 4 HOH 35 436 436 HOH HOH A . G 4 HOH 36 437 437 HOH HOH A . G 4 HOH 37 438 438 HOH HOH A . G 4 HOH 38 439 439 HOH HOH A . G 4 HOH 39 440 440 HOH HOH A . G 4 HOH 40 441 441 HOH HOH A . G 4 HOH 41 442 442 HOH HOH A . G 4 HOH 42 443 443 HOH HOH A . G 4 HOH 43 444 444 HOH HOH A . G 4 HOH 44 445 445 HOH HOH A . G 4 HOH 45 446 446 HOH HOH A . G 4 HOH 46 447 447 HOH HOH A . G 4 HOH 47 448 448 HOH HOH A . G 4 HOH 48 449 449 HOH HOH A . G 4 HOH 49 450 450 HOH HOH A . G 4 HOH 50 451 451 HOH HOH A . G 4 HOH 51 452 452 HOH HOH A . G 4 HOH 52 453 453 HOH HOH A . G 4 HOH 53 454 454 HOH HOH A . G 4 HOH 54 455 455 HOH HOH A . G 4 HOH 55 456 456 HOH HOH A . G 4 HOH 56 457 457 HOH HOH A . G 4 HOH 57 458 458 HOH HOH A . G 4 HOH 58 459 459 HOH HOH A . G 4 HOH 59 460 460 HOH HOH A . G 4 HOH 60 461 461 HOH HOH A . G 4 HOH 61 462 462 HOH HOH A . G 4 HOH 62 463 463 HOH HOH A . G 4 HOH 63 464 464 HOH HOH A . G 4 HOH 64 465 465 HOH HOH A . G 4 HOH 65 466 466 HOH HOH A . G 4 HOH 66 467 467 HOH HOH A . G 4 HOH 67 468 468 HOH HOH A . G 4 HOH 68 469 469 HOH HOH A . G 4 HOH 69 470 470 HOH HOH A . G 4 HOH 70 471 471 HOH HOH A . G 4 HOH 71 472 472 HOH HOH A . G 4 HOH 72 473 473 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 430 ? G HOH . 2 1 A HOH 441 ? G HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASP 2 ? A ASP 2 ? 1_555 CD ? C CD . ? A CD 301 ? 1_555 OD2 ? A ASP 2 ? A ASP 2 ? 1_555 49.0 ? 2 OD1 ? A ASP 2 ? A ASP 2 ? 1_555 CD ? C CD . ? A CD 301 ? 1_555 OE2 ? A GLU 47 ? A GLU 47 ? 5_456 136.9 ? 3 OD2 ? A ASP 2 ? A ASP 2 ? 1_555 CD ? C CD . ? A CD 301 ? 1_555 OE2 ? A GLU 47 ? A GLU 47 ? 5_456 90.1 ? 4 OD1 ? A ASP 2 ? A ASP 2 ? 1_555 CD ? C CD . ? A CD 301 ? 1_555 O ? G HOH . ? A HOH 424 ? 1_555 96.6 ? 5 OD2 ? A ASP 2 ? A ASP 2 ? 1_555 CD ? C CD . ? A CD 301 ? 1_555 O ? G HOH . ? A HOH 424 ? 1_555 109.7 ? 6 OE2 ? A GLU 47 ? A GLU 47 ? 5_456 CD ? C CD . ? A CD 301 ? 1_555 O ? G HOH . ? A HOH 424 ? 1_555 112.1 ? 7 OD1 ? A ASP 2 ? A ASP 2 ? 1_555 CD ? C CD . ? A CD 301 ? 1_555 O ? G HOH . ? A HOH 428 ? 5_456 92.4 ? 8 OD2 ? A ASP 2 ? A ASP 2 ? 1_555 CD ? C CD . ? A CD 301 ? 1_555 O ? G HOH . ? A HOH 428 ? 5_456 124.2 ? 9 OE2 ? A GLU 47 ? A GLU 47 ? 5_456 CD ? C CD . ? A CD 301 ? 1_555 O ? G HOH . ? A HOH 428 ? 5_456 103.5 ? 10 O ? G HOH . ? A HOH 424 ? 1_555 CD ? C CD . ? A CD 301 ? 1_555 O ? G HOH . ? A HOH 428 ? 5_456 113.9 ? 11 NE2 ? A HIS 18 ? A HIS 18 ? 1_555 FE ? F HEC . ? A HEC 200 ? 1_555 NA ? F HEC . ? A HEC 200 ? 1_555 89.2 ? 12 NE2 ? A HIS 18 ? A HIS 18 ? 1_555 FE ? F HEC . ? A HEC 200 ? 1_555 NB ? F HEC . ? A HEC 200 ? 1_555 86.7 ? 13 NA ? F HEC . ? A HEC 200 ? 1_555 FE ? F HEC . ? A HEC 200 ? 1_555 NB ? F HEC . ? A HEC 200 ? 1_555 88.9 ? 14 NE2 ? A HIS 18 ? A HIS 18 ? 1_555 FE ? F HEC . ? A HEC 200 ? 1_555 NC ? F HEC . ? A HEC 200 ? 1_555 94.9 ? 15 NA ? F HEC . ? A HEC 200 ? 1_555 FE ? F HEC . ? A HEC 200 ? 1_555 NC ? F HEC . ? A HEC 200 ? 1_555 175.4 ? 16 NB ? F HEC . ? A HEC 200 ? 1_555 FE ? F HEC . ? A HEC 200 ? 1_555 NC ? F HEC . ? A HEC 200 ? 1_555 89.2 ? 17 NE2 ? A HIS 18 ? A HIS 18 ? 1_555 FE ? F HEC . ? A HEC 200 ? 1_555 ND ? F HEC . ? A HEC 200 ? 1_555 91.2 ? 18 NA ? F HEC . ? A HEC 200 ? 1_555 FE ? F HEC . ? A HEC 200 ? 1_555 ND ? F HEC . ? A HEC 200 ? 1_555 91.1 ? 19 NB ? F HEC . ? A HEC 200 ? 1_555 FE ? F HEC . ? A HEC 200 ? 1_555 ND ? F HEC . ? A HEC 200 ? 1_555 177.9 ? 20 NC ? F HEC . ? A HEC 200 ? 1_555 FE ? F HEC . ? A HEC 200 ? 1_555 ND ? F HEC . ? A HEC 200 ? 1_555 91.0 ? 21 NE2 ? A HIS 18 ? A HIS 18 ? 1_555 FE ? F HEC . ? A HEC 200 ? 1_555 SD ? A MET 60 ? A MET 60 ? 1_555 172.1 ? 22 NA ? F HEC . ? A HEC 200 ? 1_555 FE ? F HEC . ? A HEC 200 ? 1_555 SD ? A MET 60 ? A MET 60 ? 1_555 83.0 ? 23 NB ? F HEC . ? A HEC 200 ? 1_555 FE ? F HEC . ? A HEC 200 ? 1_555 SD ? A MET 60 ? A MET 60 ? 1_555 92.8 ? 24 NC ? F HEC . ? A HEC 200 ? 1_555 FE ? F HEC . ? A HEC 200 ? 1_555 SD ? A MET 60 ? A MET 60 ? 1_555 93.0 ? 25 ND ? F HEC . ? A HEC 200 ? 1_555 FE ? F HEC . ? A HEC 200 ? 1_555 SD ? A MET 60 ? A MET 60 ? 1_555 89.3 ? 26 OD1 ? A ASP 41 ? A ASP 41 ? 22_445 CD ? B CD . ? A CD 300 ? 1_555 OD2 ? A ASP 41 ? A ASP 41 ? 22_445 53.5 ? 27 OD1 ? A ASP 41 ? A ASP 41 ? 22_445 CD ? B CD . ? A CD 300 ? 1_555 OE1 ? A GLU 71 ? A GLU 71 ? 1_555 76.6 ? 28 OD2 ? A ASP 41 ? A ASP 41 ? 22_445 CD ? B CD . ? A CD 300 ? 1_555 OE1 ? A GLU 71 ? A GLU 71 ? 1_555 123.6 ? 29 OD1 ? A ASP 41 ? A ASP 41 ? 22_445 CD ? B CD . ? A CD 300 ? 1_555 OE2 ? A GLU 71 ? A GLU 71 ? 1_555 121.1 ? 30 OD2 ? A ASP 41 ? A ASP 41 ? 22_445 CD ? B CD . ? A CD 300 ? 1_555 OE2 ? A GLU 71 ? A GLU 71 ? 1_555 173.9 ? 31 OE1 ? A GLU 71 ? A GLU 71 ? 1_555 CD ? B CD . ? A CD 300 ? 1_555 OE2 ? A GLU 71 ? A GLU 71 ? 1_555 53.8 ? 32 OD1 ? A ASP 41 ? A ASP 41 ? 22_445 CD ? B CD . ? A CD 300 ? 1_555 O ? G HOH . ? A HOH 421 ? 22_445 89.6 ? 33 OD2 ? A ASP 41 ? A ASP 41 ? 22_445 CD ? B CD . ? A CD 300 ? 1_555 O ? G HOH . ? A HOH 421 ? 22_445 88.1 ? 34 OE1 ? A GLU 71 ? A GLU 71 ? 1_555 CD ? B CD . ? A CD 300 ? 1_555 O ? G HOH . ? A HOH 421 ? 22_445 118.9 ? 35 OE2 ? A GLU 71 ? A GLU 71 ? 1_555 CD ? B CD . ? A CD 300 ? 1_555 O ? G HOH . ? A HOH 421 ? 22_445 88.9 ? 36 OE2 ? A GLU 54 ? A GLU 54 ? 1_555 CD ? D CD . ? A CD 302 ? 1_555 OE1 ? A GLU 54 ? A GLU 54 ? 1_555 46.9 ? 37 OE2 ? A GLU 54 ? A GLU 54 ? 1_555 CD ? D CD . ? A CD 302 ? 1_555 OE2 ? A GLU 69 ? A GLU 69 ? 1_555 85.8 ? 38 OE1 ? A GLU 54 ? A GLU 54 ? 1_555 CD ? D CD . ? A CD 302 ? 1_555 OE2 ? A GLU 69 ? A GLU 69 ? 1_555 129.6 ? 39 OE2 ? A GLU 54 ? A GLU 54 ? 1_555 CD ? D CD . ? A CD 302 ? 1_555 OE1 ? A GLU 69 ? A GLU 69 ? 1_555 79.5 ? 40 OE1 ? A GLU 54 ? A GLU 54 ? 1_555 CD ? D CD . ? A CD 302 ? 1_555 OE1 ? A GLU 69 ? A GLU 69 ? 1_555 121.3 ? 41 OE2 ? A GLU 69 ? A GLU 69 ? 1_555 CD ? D CD . ? A CD 302 ? 1_555 OE1 ? A GLU 69 ? A GLU 69 ? 1_555 45.4 ? 42 OE2 ? A GLU 54 ? A GLU 54 ? 1_555 CD ? D CD . ? A CD 302 ? 1_555 O ? G HOH . ? A HOH 403 ? 1_555 110.1 ? 43 OE1 ? A GLU 54 ? A GLU 54 ? 1_555 CD ? D CD . ? A CD 302 ? 1_555 O ? G HOH . ? A HOH 403 ? 1_555 101.8 ? 44 OE2 ? A GLU 69 ? A GLU 69 ? 1_555 CD ? D CD . ? A CD 302 ? 1_555 O ? G HOH . ? A HOH 403 ? 1_555 112.0 ? 45 OE1 ? A GLU 69 ? A GLU 69 ? 1_555 CD ? D CD . ? A CD 302 ? 1_555 O ? G HOH . ? A HOH 403 ? 1_555 72.2 ? 46 OE2 ? A GLU 54 ? A GLU 54 ? 1_555 CD ? D CD . ? A CD 302 ? 1_555 O ? G HOH . ? A HOH 412 ? 18_445 140.0 ? 47 OE1 ? A GLU 54 ? A GLU 54 ? 1_555 CD ? D CD . ? A CD 302 ? 1_555 O ? G HOH . ? A HOH 412 ? 18_445 101.4 ? 48 OE2 ? A GLU 69 ? A GLU 69 ? 1_555 CD ? D CD . ? A CD 302 ? 1_555 O ? G HOH . ? A HOH 412 ? 18_445 108.8 ? 49 OE1 ? A GLU 69 ? A GLU 69 ? 1_555 CD ? D CD . ? A CD 302 ? 1_555 O ? G HOH . ? A HOH 412 ? 18_445 137.2 ? 50 O ? G HOH . ? A HOH 403 ? 1_555 CD ? D CD . ? A CD 302 ? 1_555 O ? G HOH . ? A HOH 412 ? 18_445 98.8 ? 51 OE2 ? A GLU 54 ? A GLU 54 ? 1_555 CD ? D CD . ? A CD 302 ? 1_555 O ? G HOH . ? A HOH 419 ? 1_555 69.1 ? 52 OE1 ? A GLU 54 ? A GLU 54 ? 1_555 CD ? D CD . ? A CD 302 ? 1_555 O ? G HOH . ? A HOH 419 ? 1_555 74.2 ? 53 OE2 ? A GLU 69 ? A GLU 69 ? 1_555 CD ? D CD . ? A CD 302 ? 1_555 O ? G HOH . ? A HOH 419 ? 1_555 72.6 ? 54 OE1 ? A GLU 69 ? A GLU 69 ? 1_555 CD ? D CD . ? A CD 302 ? 1_555 O ? G HOH . ? A HOH 419 ? 1_555 111.8 ? 55 O ? G HOH . ? A HOH 403 ? 1_555 CD ? D CD . ? A CD 302 ? 1_555 O ? G HOH . ? A HOH 419 ? 1_555 175.3 ? 56 O ? G HOH . ? A HOH 412 ? 18_445 CD ? D CD . ? A CD 302 ? 1_555 O ? G HOH . ? A HOH 419 ? 1_555 79.8 ? 57 OE2 ? A GLU 70 ? A GLU 70 ? 9_546 CD ? E CD . ? A CD 303 ? 1_555 O ? G HOH . ? A HOH 422 ? 1_555 117.0 ? 58 OE2 ? A GLU 70 ? A GLU 70 ? 9_546 CD ? E CD . ? A CD 303 ? 1_555 O ? G HOH . ? A HOH 456 ? 1_555 119.1 ? 59 O ? G HOH . ? A HOH 422 ? 1_555 CD ? E CD . ? A CD 303 ? 1_555 O ? G HOH . ? A HOH 456 ? 1_555 42.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1996-01-29 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-11-16 5 'Structure model' 2 0 2021-03-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 5 'Structure model' 'Atomic model' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Non-polymer description' 8 5 'Structure model' Other 9 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' atom_site 2 5 'Structure model' chem_comp 3 5 'Structure model' entity 4 5 'Structure model' pdbx_database_status 5 5 'Structure model' pdbx_entity_nonpoly 6 5 'Structure model' pdbx_nonpoly_scheme 7 5 'Structure model' pdbx_struct_conn_angle 8 5 'Structure model' struct_conn 9 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_atom_site.B_iso_or_equiv' 2 5 'Structure model' '_atom_site.Cartn_x' 3 5 'Structure model' '_atom_site.Cartn_y' 4 5 'Structure model' '_atom_site.Cartn_z' 5 5 'Structure model' '_atom_site.auth_atom_id' 6 5 'Structure model' '_atom_site.auth_comp_id' 7 5 'Structure model' '_atom_site.label_atom_id' 8 5 'Structure model' '_atom_site.label_comp_id' 9 5 'Structure model' '_atom_site.type_symbol' 10 5 'Structure model' '_chem_comp.formula' 11 5 'Structure model' '_chem_comp.formula_weight' 12 5 'Structure model' '_chem_comp.id' 13 5 'Structure model' '_chem_comp.name' 14 5 'Structure model' '_chem_comp.pdbx_synonyms' 15 5 'Structure model' '_entity.formula_weight' 16 5 'Structure model' '_entity.pdbx_description' 17 5 'Structure model' '_pdbx_database_status.process_site' 18 5 'Structure model' '_pdbx_entity_nonpoly.comp_id' 19 5 'Structure model' '_pdbx_entity_nonpoly.name' 20 5 'Structure model' '_pdbx_nonpoly_scheme.mon_id' 21 5 'Structure model' '_pdbx_nonpoly_scheme.pdb_mon_id' 22 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 23 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 24 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 25 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 26 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 27 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 28 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 29 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 30 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 31 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 32 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 33 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 34 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 35 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 36 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 37 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 38 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 39 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 40 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 41 5 'Structure model' '_pdbx_struct_conn_angle.value' 42 5 'Structure model' '_struct_conn.pdbx_dist_value' 43 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 44 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 45 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 46 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 47 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 48 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 49 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 50 5 'Structure model' '_struct_conn.ptnr1_symmetry' 51 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 52 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 53 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 54 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 55 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 56 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 57 5 'Structure model' '_struct_conn.ptnr2_symmetry' 58 5 'Structure model' '_struct_site.details' 59 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 60 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 61 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' 3.1 ? 1 X-PLOR refinement 3.1 ? 2 R-AXIS 'data reduction' . ? 3 MSC 'data reduction' . ? 4 X-PLOR phasing 3.1 ? 5 # _pdbx_database_remark.id 700 _pdbx_database_remark.text ;SHEET DUE TO INCOMPLETE ELECTRON DENSITY, THE CE1, CE2, CZ AND OH OF TYR 90 IS MISSING. A SHORT TWO-STRANDED ANTI-PARALLEL BETA-SHEET IS FORMED BY RESIDUES 54 - 63, ENCLOSING A TYPE II' TURN BETWEEN RESIDUES 57 AND 60. THERE ARE TWO INTERSTRAND HYDROGEN BONDS BETWEEN RESIDUES 57 AND 60. ; # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 422 ? ? O A HOH 469 ? ? 1.91 2 1 O A HOH 422 ? ? O A HOH 456 ? ? 1.95 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CG _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 HIS _pdbx_validate_rmsd_bond.auth_seq_id_1 18 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CD2 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 HIS _pdbx_validate_rmsd_bond.auth_seq_id_2 18 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.415 _pdbx_validate_rmsd_bond.bond_target_value 1.354 _pdbx_validate_rmsd_bond.bond_deviation 0.061 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.009 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LYS _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 57 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -170.26 _pdbx_validate_torsion.psi 109.20 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A TYR 90 ? CE1 ? A TYR 90 CE1 2 1 Y 1 A TYR 90 ? CE2 ? A TYR 90 CE2 3 1 Y 1 A TYR 90 ? CZ ? A TYR 90 CZ 4 1 Y 1 A TYR 90 ? OH ? A TYR 90 OH # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CADMIUM ION' CD 3 'HEME C' HEC 4 water HOH #