data_1D0T # _entry.id 1D0T # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1D0T pdb_00001d0t 10.2210/pdb1d0t/pdb RCSB RCSB009692 ? ? WWPDB D_1000009692 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1D0U _pdbx_database_related.details 'phage MS2 replicase operator RNA hairpin' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1D0T _pdbx_database_status.recvd_initial_deposition_date 1999-09-14 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Smith, J.S.' 1 'Nikonowicz, E.P.' 2 # _citation.id primary _citation.title 'Phosphorothioate substitution can substantially alter RNA conformation.' _citation.journal_abbrev Biochemistry _citation.journal_volume 39 _citation.page_first 5642 _citation.page_last 5652 _citation.year 2000 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10801314 _citation.pdbx_database_id_DOI 10.1021/bi992712b # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Smith, J.S.' 1 ? primary 'Nikonowicz, E.P.' 2 ? # _cell.entry_id 1D0T _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D0T _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'PHOSPHOROTHIOATE SUBSTITUTED PHAGE MS2 RNA BINDING SITE' _entity.formula_weight 6809.375 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ;MS2 REPLICASE OPERATOR HAIRPIN. RP PHOSPHORYL (NON-BRIDGING) SULFUR 5' TO EACH ADENINE NUCLEOTIDE. ; # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'GGG(SRA)UC(SRA)CC(SRA)UU(SRA)GGG(SRA)UCUC' _entity_poly.pdbx_seq_one_letter_code_can GGGAUCACCAUUAGGGAUCUC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 G n 1 4 SRA n 1 5 U n 1 6 C n 1 7 SRA n 1 8 C n 1 9 C n 1 10 SRA n 1 11 U n 1 12 U n 1 13 SRA n 1 14 G n 1 15 G n 1 16 G n 1 17 SRA n 1 18 U n 1 19 C n 1 20 U n 1 21 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details ;Transcription by T7 RNA ploymerase using 5'-a-thio-ATP ; # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1D0T _struct_ref.pdbx_db_accession 1D0T _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1D0T _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 21 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1D0T _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 21 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 21 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 SRA 'RNA linking' n ;ADENOSINE -5'-THIO-MONOPHOSPHATE ; ? 'C10 H14 N5 O6 P S' 363.287 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D NOESY' 2 1 1 3D_15N-separated_NOESY 3 2 2 3D_15N-separated_NOESY 4 2 2 DQF-COSY 5 2 2 '31P-1H HetCor' 6 2 2 '2D 13C-filtered NOESY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 6.8 _pdbx_nmr_exptl_sample_conditions.ionic_strength ~50mM _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 ;2.0 mM replicase operator RNA U-15N,13C at U, C, and G, unlabeled A; phosphorothioate 5' to each adenine;; 10 mM KPi buffer; 10 mM NaCl; 0.2 mM EDTA ; '90% H2O/10% D2O' 2 ;2.0 mM replicase operator RNA U-15N,13C at U, C, and G, unlabeled A; phosphorothioate 5' to each adenine;; 10 mM KPi buffer; 10 mM NaCl; 0.2 mM EDTA ; '100% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AMX _pdbx_nmr_spectrometer.field_strength 500 # _pdbx_nmr_refine.entry_id 1D0T _pdbx_nmr_refine.method 'simulated annealing and molecular dynamics refinement' _pdbx_nmr_refine.details ;structures were calculated using 313 conformationally restrictive NOE distance constraints (i.e., intra-residue sugar-sugar NOEs are not included), 20 H-bond base pair constraints, 30 backbone dihedral restraints, and dihedral restraints to restrict sugar pucker conformation. Parameter file was modified to incorporate bond-length, bond-angle, charge, van der Waal's radius for the Rp phosphoryl sulfur atoms located 5' to each adenine in the sequence. [Jaroszewski, JW., et al., Anti-Cancer Drug Design ( 1992) 7, 253; Florian, J. et al., J. Am. Chem. Soc. (1998) 120, 7959]. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1D0T _pdbx_nmr_details.text ;The structure was determined using standard 2D homonuclear and 2D/3D heteronuclear techniques. Filtered experiments used to identify inter-residue NOEs involving unlabeled A residues ; # _pdbx_nmr_ensemble.entry_id 1D0T _pdbx_nmr_ensemble.conformers_calculated_total_number 30 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria ;back calculated data agree with experimental NOESY spectrum,structures with acceptable covalent geometry,structures with the least restraint violations, structures with the lowest energy ; _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1D0T _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'minimized average structure' # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal UXNMR 1994 collection Spectraspin 1 Felix 1998 processing Biosym-MSI 2 X-PLOR 3.851 'structure solution' Brunger 3 X-PLOR 3.851 refinement Brunger 4 # _exptl.entry_id 1D0T _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1D0T _struct.title 'SOLUTION STRUCTURE OF A PHOSPHOROTHIOATE MODIFIED RNA BINDING SITE FOR PHAGE MS2 COAT PROTEIN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details 'minimized average' # _struct_keywords.entry_id 1D0T _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RNA HAIRPIN, PHOSPHOROTHIOATE, THIOPHOSPHATE, BULGED BASE, STEM-LOOP, RNA' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A G 3 "O3'" ? ? ? 1_555 A SRA 4 P ? ? A G 3 A SRA 4 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale2 covale both ? A SRA 4 "O3'" ? ? ? 1_555 A U 5 P ? ? A SRA 4 A U 5 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale3 covale both ? A C 6 "O3'" ? ? ? 1_555 A SRA 7 P ? ? A C 6 A SRA 7 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale4 covale both ? A SRA 7 "O3'" ? ? ? 1_555 A C 8 P ? ? A SRA 7 A C 8 1_555 ? ? ? ? ? ? ? 1.614 ? ? covale5 covale both ? A C 9 "O3'" ? ? ? 1_555 A SRA 10 P ? ? A C 9 A SRA 10 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale6 covale both ? A SRA 10 "O3'" ? ? ? 1_555 A U 11 P ? ? A SRA 10 A U 11 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale7 covale both ? A U 12 "O3'" ? ? ? 1_555 A SRA 13 P ? ? A U 12 A SRA 13 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale8 covale both ? A SRA 13 "O3'" ? ? ? 1_555 A G 14 P ? ? A SRA 13 A G 14 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale9 covale both ? A G 16 "O3'" ? ? ? 1_555 A SRA 17 P ? ? A G 16 A SRA 17 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale10 covale both ? A SRA 17 "O3'" ? ? ? 1_555 A U 18 P ? ? A SRA 17 A U 18 1_555 ? ? ? ? ? ? ? 1.611 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 21 N3 ? ? A G 1 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 21 O2 ? ? A G 1 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 21 N4 ? ? A G 1 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A U 20 O2 ? ? A G 2 A U 20 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog5 hydrog ? ? A G 2 O6 ? ? ? 1_555 A U 20 N3 ? ? A G 2 A U 20 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog6 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 19 N3 ? ? A G 3 A C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 19 O2 ? ? A G 3 A C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 19 N4 ? ? A G 3 A C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A SRA 4 N1 ? ? ? 1_555 A U 18 N3 ? ? A SRA 4 A U 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A SRA 4 N6 ? ? ? 1_555 A U 18 O4 ? ? A SRA 4 A U 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 5 N3 ? ? ? 1_555 A SRA 17 N1 ? ? A U 5 A SRA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 5 O4 ? ? ? 1_555 A SRA 17 N6 ? ? A U 5 A SRA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 6 N3 ? ? ? 1_555 A C 8 N4 ? ? A C 6 A C 8 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog14 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 16 N1 ? ? A C 6 A G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 16 O6 ? ? A C 6 A G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 16 N2 ? ? A C 6 A G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A SRA 7 N3 ? ? ? 1_555 A C 8 N4 ? ? A SRA 7 A C 8 1_555 ? ? ? ? ? ? 'SRA-C MISPAIR' ? ? ? hydrog18 hydrog ? ? A SRA 7 N3 ? ? ? 1_555 A C 9 N4 ? ? A SRA 7 A C 9 1_555 ? ? ? ? ? ? 'SRA-C MISPAIR' ? ? ? hydrog19 hydrog ? ? A C 8 N3 ? ? ? 1_555 A G 15 N1 ? ? A C 8 A G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 8 N4 ? ? ? 1_555 A G 15 O6 ? ? A C 8 A G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 8 O2 ? ? ? 1_555 A G 15 N2 ? ? A C 8 A G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 9 N3 ? ? ? 1_555 A G 14 N1 ? ? A C 9 A G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 9 N4 ? ? ? 1_555 A G 14 O6 ? ? A C 9 A G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 9 O2 ? ? ? 1_555 A G 14 N2 ? ? A C 9 A G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 9 N3 ? ? ? 1_555 A G 15 N1 ? ? A C 9 A G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 9 N4 ? ? ? 1_555 A G 15 O6 ? ? A C 9 A G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 9 O2 ? ? ? 1_555 A G 15 N2 ? ? A C 9 A G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _database_PDB_matrix.entry_id 1D0T _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1D0T _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 G 3 3 3 G G A . n A 1 4 SRA 4 4 4 SRA SRA A . n A 1 5 U 5 5 5 U U A . n A 1 6 C 6 6 6 C C A . n A 1 7 SRA 7 7 7 SRA SRA A . n A 1 8 C 8 8 8 C C A . n A 1 9 C 9 9 9 C C A . n A 1 10 SRA 10 10 10 SRA SRA A . n A 1 11 U 11 11 11 U U A . n A 1 12 U 12 12 12 U U A . n A 1 13 SRA 13 13 13 SRA SRA A . n A 1 14 G 14 14 14 G G A . n A 1 15 G 15 15 15 G G A . n A 1 16 G 16 16 16 G G A . n A 1 17 SRA 17 17 17 SRA SRA A . n A 1 18 U 18 18 18 U U A . n A 1 19 C 19 19 19 C C A . n A 1 20 U 20 20 20 U U A . n A 1 21 C 21 21 21 C C A . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A SRA 4 A SRA 4 ? A ;ADENOSINE -5'-THIO-MONOPHOSPHATE ; 2 A SRA 7 A SRA 7 ? A ;ADENOSINE -5'-THIO-MONOPHOSPHATE ; 3 A SRA 10 A SRA 10 ? A ;ADENOSINE -5'-THIO-MONOPHOSPHATE ; 4 A SRA 13 A SRA 13 ? A ;ADENOSINE -5'-THIO-MONOPHOSPHATE ; 5 A SRA 17 A SRA 17 ? A ;ADENOSINE -5'-THIO-MONOPHOSPHATE ; # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-05-24 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 6 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 7 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 9 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 10 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 11 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 12 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 13 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 14 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.73 113.10 4.63 0.50 N 2 1 C8 A G 1 ? ? N9 A G 1 ? ? C4 A G 1 ? ? 103.68 106.40 -2.72 0.40 N 3 1 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 117.69 113.10 4.59 0.50 N 4 1 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 103.70 106.40 -2.70 0.40 N 5 1 N7 A G 3 ? ? C8 A G 3 ? ? N9 A G 3 ? ? 117.61 113.10 4.51 0.50 N 6 1 C8 A G 3 ? ? N9 A G 3 ? ? C4 A G 3 ? ? 103.77 106.40 -2.63 0.40 N 7 1 N7 A G 14 ? ? C8 A G 14 ? ? N9 A G 14 ? ? 117.64 113.10 4.54 0.50 N 8 1 C8 A G 14 ? ? N9 A G 14 ? ? C4 A G 14 ? ? 103.66 106.40 -2.74 0.40 N 9 1 N7 A G 15 ? ? C8 A G 15 ? ? N9 A G 15 ? ? 117.66 113.10 4.56 0.50 N 10 1 C8 A G 15 ? ? N9 A G 15 ? ? C4 A G 15 ? ? 103.70 106.40 -2.70 0.40 N 11 1 N7 A G 16 ? ? C8 A G 16 ? ? N9 A G 16 ? ? 117.58 113.10 4.48 0.50 N 12 1 C8 A G 16 ? ? N9 A G 16 ? ? C4 A G 16 ? ? 103.75 106.40 -2.65 0.40 N 13 2 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.72 113.10 4.62 0.50 N 14 2 C8 A G 1 ? ? N9 A G 1 ? ? C4 A G 1 ? ? 103.68 106.40 -2.72 0.40 N 15 2 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 117.65 113.10 4.55 0.50 N 16 2 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 103.68 106.40 -2.72 0.40 N 17 2 N7 A G 3 ? ? C8 A G 3 ? ? N9 A G 3 ? ? 117.60 113.10 4.50 0.50 N 18 2 C8 A G 3 ? ? N9 A G 3 ? ? C4 A G 3 ? ? 103.74 106.40 -2.66 0.40 N 19 2 N7 A G 14 ? ? C8 A G 14 ? ? N9 A G 14 ? ? 117.61 113.10 4.51 0.50 N 20 2 C8 A G 14 ? ? N9 A G 14 ? ? C4 A G 14 ? ? 103.67 106.40 -2.73 0.40 N 21 2 N7 A G 15 ? ? C8 A G 15 ? ? N9 A G 15 ? ? 117.57 113.10 4.47 0.50 N 22 2 C8 A G 15 ? ? N9 A G 15 ? ? C4 A G 15 ? ? 103.74 106.40 -2.66 0.40 N 23 2 N7 A G 16 ? ? C8 A G 16 ? ? N9 A G 16 ? ? 117.65 113.10 4.55 0.50 N 24 2 C8 A G 16 ? ? N9 A G 16 ? ? C4 A G 16 ? ? 103.73 106.40 -2.67 0.40 N 25 3 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.63 113.10 4.53 0.50 N 26 3 C8 A G 1 ? ? N9 A G 1 ? ? C4 A G 1 ? ? 103.68 106.40 -2.72 0.40 N 27 3 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 117.63 113.10 4.53 0.50 N 28 3 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 103.78 106.40 -2.62 0.40 N 29 3 N7 A G 3 ? ? C8 A G 3 ? ? N9 A G 3 ? ? 117.56 113.10 4.46 0.50 N 30 3 C8 A G 3 ? ? N9 A G 3 ? ? C4 A G 3 ? ? 103.73 106.40 -2.67 0.40 N 31 3 N7 A G 14 ? ? C8 A G 14 ? ? N9 A G 14 ? ? 117.63 113.10 4.53 0.50 N 32 3 C8 A G 14 ? ? N9 A G 14 ? ? C4 A G 14 ? ? 103.70 106.40 -2.70 0.40 N 33 3 N7 A G 15 ? ? C8 A G 15 ? ? N9 A G 15 ? ? 117.61 113.10 4.51 0.50 N 34 3 C8 A G 15 ? ? N9 A G 15 ? ? C4 A G 15 ? ? 103.71 106.40 -2.69 0.40 N 35 3 N7 A G 16 ? ? C8 A G 16 ? ? N9 A G 16 ? ? 117.54 113.10 4.44 0.50 N 36 3 C8 A G 16 ? ? N9 A G 16 ? ? C4 A G 16 ? ? 103.77 106.40 -2.63 0.40 N 37 4 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.68 113.10 4.58 0.50 N 38 4 C8 A G 1 ? ? N9 A G 1 ? ? C4 A G 1 ? ? 103.66 106.40 -2.74 0.40 N 39 4 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 117.62 113.10 4.52 0.50 N 40 4 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 103.68 106.40 -2.72 0.40 N 41 4 N7 A G 3 ? ? C8 A G 3 ? ? N9 A G 3 ? ? 117.60 113.10 4.50 0.50 N 42 4 C8 A G 3 ? ? N9 A G 3 ? ? C4 A G 3 ? ? 103.76 106.40 -2.64 0.40 N 43 4 N7 A G 14 ? ? C8 A G 14 ? ? N9 A G 14 ? ? 117.62 113.10 4.52 0.50 N 44 4 C8 A G 14 ? ? N9 A G 14 ? ? C4 A G 14 ? ? 103.70 106.40 -2.70 0.40 N 45 4 N7 A G 15 ? ? C8 A G 15 ? ? N9 A G 15 ? ? 117.69 113.10 4.59 0.50 N 46 4 C8 A G 15 ? ? N9 A G 15 ? ? C4 A G 15 ? ? 103.65 106.40 -2.75 0.40 N 47 4 N7 A G 16 ? ? C8 A G 16 ? ? N9 A G 16 ? ? 117.63 113.10 4.53 0.50 N 48 4 C8 A G 16 ? ? N9 A G 16 ? ? C4 A G 16 ? ? 103.74 106.40 -2.66 0.40 N 49 5 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.56 113.10 4.46 0.50 N 50 5 C8 A G 1 ? ? N9 A G 1 ? ? C4 A G 1 ? ? 103.73 106.40 -2.67 0.40 N 51 5 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 117.68 113.10 4.58 0.50 N 52 5 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 103.72 106.40 -2.68 0.40 N 53 5 N7 A G 3 ? ? C8 A G 3 ? ? N9 A G 3 ? ? 117.61 113.10 4.51 0.50 N 54 5 C8 A G 3 ? ? N9 A G 3 ? ? C4 A G 3 ? ? 103.77 106.40 -2.63 0.40 N 55 5 N7 A G 14 ? ? C8 A G 14 ? ? N9 A G 14 ? ? 117.67 113.10 4.57 0.50 N 56 5 C8 A G 14 ? ? N9 A G 14 ? ? C4 A G 14 ? ? 103.67 106.40 -2.73 0.40 N 57 5 N7 A G 15 ? ? C8 A G 15 ? ? N9 A G 15 ? ? 117.71 113.10 4.61 0.50 N 58 5 C8 A G 15 ? ? N9 A G 15 ? ? C4 A G 15 ? ? 103.69 106.40 -2.71 0.40 N 59 5 N7 A G 16 ? ? C8 A G 16 ? ? N9 A G 16 ? ? 117.62 113.10 4.52 0.50 N 60 5 C8 A G 16 ? ? N9 A G 16 ? ? C4 A G 16 ? ? 103.77 106.40 -2.63 0.40 N 61 6 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.57 113.10 4.47 0.50 N 62 6 C8 A G 1 ? ? N9 A G 1 ? ? C4 A G 1 ? ? 103.69 106.40 -2.71 0.40 N 63 6 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 117.69 113.10 4.59 0.50 N 64 6 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 103.79 106.40 -2.61 0.40 N 65 6 N7 A G 3 ? ? C8 A G 3 ? ? N9 A G 3 ? ? 117.61 113.10 4.51 0.50 N 66 6 C8 A G 3 ? ? N9 A G 3 ? ? C4 A G 3 ? ? 103.74 106.40 -2.66 0.40 N 67 6 N7 A G 14 ? ? C8 A G 14 ? ? N9 A G 14 ? ? 117.57 113.10 4.47 0.50 N 68 6 C8 A G 14 ? ? N9 A G 14 ? ? C4 A G 14 ? ? 103.77 106.40 -2.63 0.40 N 69 6 N7 A G 15 ? ? C8 A G 15 ? ? N9 A G 15 ? ? 117.65 113.10 4.55 0.50 N 70 6 C8 A G 15 ? ? N9 A G 15 ? ? C4 A G 15 ? ? 103.75 106.40 -2.65 0.40 N 71 6 N7 A G 16 ? ? C8 A G 16 ? ? N9 A G 16 ? ? 117.64 113.10 4.54 0.50 N 72 6 C8 A G 16 ? ? N9 A G 16 ? ? C4 A G 16 ? ? 103.70 106.40 -2.70 0.40 N 73 7 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.59 113.10 4.49 0.50 N 74 7 C8 A G 1 ? ? N9 A G 1 ? ? C4 A G 1 ? ? 103.76 106.40 -2.64 0.40 N 75 7 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 117.68 113.10 4.58 0.50 N 76 7 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 103.71 106.40 -2.69 0.40 N 77 7 N7 A G 3 ? ? C8 A G 3 ? ? N9 A G 3 ? ? 117.63 113.10 4.53 0.50 N 78 7 C8 A G 3 ? ? N9 A G 3 ? ? C4 A G 3 ? ? 103.81 106.40 -2.59 0.40 N 79 7 N7 A G 14 ? ? C8 A G 14 ? ? N9 A G 14 ? ? 117.70 113.10 4.60 0.50 N 80 7 C8 A G 14 ? ? N9 A G 14 ? ? C4 A G 14 ? ? 103.70 106.40 -2.70 0.40 N 81 7 N7 A G 15 ? ? C8 A G 15 ? ? N9 A G 15 ? ? 117.62 113.10 4.52 0.50 N 82 7 C8 A G 15 ? ? N9 A G 15 ? ? C4 A G 15 ? ? 103.71 106.40 -2.69 0.40 N 83 7 N7 A G 16 ? ? C8 A G 16 ? ? N9 A G 16 ? ? 117.55 113.10 4.45 0.50 N 84 7 C8 A G 16 ? ? N9 A G 16 ? ? C4 A G 16 ? ? 103.80 106.40 -2.60 0.40 N 85 8 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.59 113.10 4.49 0.50 N 86 8 C8 A G 1 ? ? N9 A G 1 ? ? C4 A G 1 ? ? 103.73 106.40 -2.67 0.40 N 87 8 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 117.67 113.10 4.57 0.50 N 88 8 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 103.76 106.40 -2.64 0.40 N 89 8 N7 A G 3 ? ? C8 A G 3 ? ? N9 A G 3 ? ? 117.57 113.10 4.47 0.50 N 90 8 C8 A G 3 ? ? N9 A G 3 ? ? C4 A G 3 ? ? 103.78 106.40 -2.62 0.40 N 91 8 N7 A G 14 ? ? C8 A G 14 ? ? N9 A G 14 ? ? 117.64 113.10 4.54 0.50 N 92 8 C8 A G 14 ? ? N9 A G 14 ? ? C4 A G 14 ? ? 103.74 106.40 -2.66 0.40 N 93 8 N7 A G 15 ? ? C8 A G 15 ? ? N9 A G 15 ? ? 117.61 113.10 4.51 0.50 N 94 8 C8 A G 15 ? ? N9 A G 15 ? ? C4 A G 15 ? ? 103.74 106.40 -2.66 0.40 N 95 8 N7 A G 16 ? ? C8 A G 16 ? ? N9 A G 16 ? ? 117.62 113.10 4.52 0.50 N 96 8 C8 A G 16 ? ? N9 A G 16 ? ? C4 A G 16 ? ? 103.70 106.40 -2.70 0.40 N 97 9 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.57 113.10 4.47 0.50 N 98 9 C8 A G 1 ? ? N9 A G 1 ? ? C4 A G 1 ? ? 103.74 106.40 -2.66 0.40 N 99 9 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 117.62 113.10 4.52 0.50 N 100 9 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 103.72 106.40 -2.68 0.40 N 101 9 N7 A G 3 ? ? C8 A G 3 ? ? N9 A G 3 ? ? 117.56 113.10 4.46 0.50 N 102 9 C8 A G 3 ? ? N9 A G 3 ? ? C4 A G 3 ? ? 103.78 106.40 -2.62 0.40 N 103 9 N7 A G 14 ? ? C8 A G 14 ? ? N9 A G 14 ? ? 117.58 113.10 4.48 0.50 N 104 9 C8 A G 14 ? ? N9 A G 14 ? ? C4 A G 14 ? ? 103.71 106.40 -2.69 0.40 N 105 9 N7 A G 15 ? ? C8 A G 15 ? ? N9 A G 15 ? ? 117.63 113.10 4.53 0.50 N 106 9 C8 A G 15 ? ? N9 A G 15 ? ? C4 A G 15 ? ? 103.77 106.40 -2.63 0.40 N 107 9 N7 A G 16 ? ? C8 A G 16 ? ? N9 A G 16 ? ? 117.62 113.10 4.52 0.50 N 108 9 C8 A G 16 ? ? N9 A G 16 ? ? C4 A G 16 ? ? 103.79 106.40 -2.61 0.40 N 109 10 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.63 113.10 4.53 0.50 N 110 10 C8 A G 1 ? ? N9 A G 1 ? ? C4 A G 1 ? ? 103.76 106.40 -2.64 0.40 N 111 10 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 117.64 113.10 4.54 0.50 N 112 10 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 103.76 106.40 -2.64 0.40 N 113 10 N7 A G 3 ? ? C8 A G 3 ? ? N9 A G 3 ? ? 117.58 113.10 4.48 0.50 N 114 10 C8 A G 3 ? ? N9 A G 3 ? ? C4 A G 3 ? ? 103.78 106.40 -2.62 0.40 N 115 10 N7 A G 14 ? ? C8 A G 14 ? ? N9 A G 14 ? ? 117.72 113.10 4.62 0.50 N 116 10 C8 A G 14 ? ? N9 A G 14 ? ? C4 A G 14 ? ? 103.70 106.40 -2.70 0.40 N 117 10 N7 A G 15 ? ? C8 A G 15 ? ? N9 A G 15 ? ? 117.60 113.10 4.50 0.50 N 118 10 C8 A G 15 ? ? N9 A G 15 ? ? C4 A G 15 ? ? 103.74 106.40 -2.66 0.40 N 119 10 N7 A G 16 ? ? C8 A G 16 ? ? N9 A G 16 ? ? 117.61 113.10 4.51 0.50 N 120 10 C8 A G 16 ? ? N9 A G 16 ? ? C4 A G 16 ? ? 103.78 106.40 -2.62 0.40 N # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1D0T 'double helix' 1D0T 'a-form double helix' 1D0T 'mismatched base pair' 1D0T 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 21 1_555 -1.040 -0.372 -0.209 -8.761 -8.578 -3.661 1 A_G1:C21_A A 1 ? A 21 ? 19 1 1 A G 2 1_555 A U 20 1_555 -1.856 -0.493 -0.487 -4.405 -16.282 -3.793 2 A_G2:U20_A A 2 ? A 20 ? 28 ? 1 A G 3 1_555 A C 19 1_555 -0.177 -0.163 -0.100 -6.249 -14.318 -0.119 3 A_G3:C19_A A 3 ? A 19 ? 19 1 1 A SRA 4 1_555 A U 18 1_555 -0.418 -0.093 -0.181 -5.913 -30.492 9.388 4 A_SRA4:U18_A A 4 ? A 18 ? 20 1 1 A U 5 1_555 A SRA 17 1_555 0.011 -0.264 -0.464 -2.721 -33.819 -1.924 5 A_U5:SRA17_A A 5 ? A 17 ? 20 1 1 A C 6 1_555 A G 16 1_555 0.634 -0.178 0.449 -4.715 -10.027 -3.203 6 A_C6:G16_A A 6 ? A 16 ? 19 1 1 A C 8 1_555 A G 15 1_555 -0.052 -0.168 -0.387 -1.873 3.909 -2.124 7 A_C8:G15_A A 8 ? A 15 ? 19 1 1 A C 9 1_555 A G 14 1_555 -0.517 0.210 -0.707 15.878 -4.950 3.923 8 A_C9:G14_A A 9 ? A 14 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 21 1_555 A G 2 1_555 A U 20 1_555 -0.419 -1.501 3.005 -2.550 7.708 32.610 -3.701 0.360 2.617 13.469 4.455 33.579 1 AA_G1G2:U20C21_AA A 1 ? A 21 ? A 2 ? A 20 ? 1 A G 2 1_555 A U 20 1_555 A G 3 1_555 A C 19 1_555 0.277 -1.252 3.187 -5.225 8.531 37.229 -2.882 -1.022 2.782 13.076 8.009 38.504 2 AA_G2G3:C19U20_AA A 2 ? A 20 ? A 3 ? A 19 ? 1 A G 3 1_555 A C 19 1_555 A SRA 4 1_555 A U 18 1_555 0.648 -0.881 3.061 2.023 11.415 33.362 -2.978 -0.800 2.660 19.177 -3.398 35.265 3 AA_G3SRA4:U18C19_AA A 3 ? A 19 ? A 4 ? A 18 ? 1 A SRA 4 1_555 A U 18 1_555 A U 5 1_555 A SRA 17 1_555 -0.858 -0.959 2.849 0.237 6.779 36.948 -2.238 1.360 2.633 10.587 -0.371 37.544 4 AA_SRA4U5:SRA17U18_AA A 4 ? A 18 ? A 5 ? A 17 ? 1 A U 5 1_555 A SRA 17 1_555 A C 6 1_555 A G 16 1_555 -0.123 -0.953 3.279 -4.780 12.673 36.565 -2.910 -0.374 2.803 19.401 7.317 38.912 5 AA_U5C6:G16SRA17_AA A 5 ? A 17 ? A 6 ? A 16 ? 1 A C 6 1_555 A G 16 1_555 A C 8 1_555 A G 15 1_555 -1.073 -2.117 2.595 4.587 15.287 43.782 -3.556 1.622 1.690 19.737 -5.922 46.465 6 AA_C6C8:G15G16_AA A 6 ? A 16 ? A 8 ? A 15 ? 1 A C 8 1_555 A G 15 1_555 A C 9 1_555 A G 14 1_555 0.408 -1.449 2.693 1.794 8.770 30.364 -3.904 -0.494 2.218 16.303 -3.335 31.626 7 AA_C8C9:G14G15_AA A 8 ? A 15 ? A 9 ? A 14 ? #