data_1D32 # _entry.id 1D32 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1D32 pdb_00001d32 10.2210/pdb1d32/pdb RCSB DDD030 ? ? WWPDB D_1000172637 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1992-04-15 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1D32 _pdbx_database_status.recvd_initial_deposition_date 1991-01-23 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gao, Q.' 1 'Williams, L.D.' 2 'Egli, M.' 3 'Rabinovich, D.' 4 'Chen, S.-L.' 5 'Quigley, G.J.' 6 'Rich, A.' 7 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Drug-induced DNA repair: X-ray structure of a DNA-ditercalinium complex.' Proc.Natl.Acad.Sci.USA 88 2422 2426 1991 PNASA6 US 0027-8424 0040 ? 2006181 10.1073/pnas.88.6.2422 1 'DNA-Ditercalinium Interactions: Implications for Recognition of Damaged DNA' Biochemistry 31 4315 4324 1992 BICHAW US 0006-2960 0033 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gao, Q.' 1 ? primary 'Williams, L.D.' 2 ? primary 'Egli, M.' 3 ? primary 'Rabinovich, D.' 4 ? primary 'Chen, S.L.' 5 ? primary 'Quigley, G.J.' 6 ? primary 'Rich, A.' 7 ? 1 'Williams, L.D.' 8 ? 1 'Gao, Q.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*CP*G)-3') ; 1191.818 2 ? ? ? ? 2 non-polymer syn DITERCALINIUM 718.928 1 ? ? ? ? 3 water nat water 18.015 83 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 DITERCALINIUM DIT 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DIT non-polymer . DITERCALINIUM ? 'C46 H50 N6 O2 2' 718.928 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n B 1 1 DC 1 5 5 DC C B . n B 1 2 DG 2 6 6 DG G B . n B 1 3 DC 3 7 7 DC C B . n B 1 4 DG 4 8 8 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DIT 1 9 9 DIT DIT A . D 3 HOH 1 12 12 HOH HOH A . D 3 HOH 2 16 16 HOH HOH A . D 3 HOH 3 18 18 HOH HOH A . D 3 HOH 4 19 19 HOH HOH A . D 3 HOH 5 20 20 HOH HOH A . D 3 HOH 6 21 21 HOH HOH A . D 3 HOH 7 25 25 HOH HOH A . D 3 HOH 8 26 26 HOH HOH A . D 3 HOH 9 29 29 HOH HOH A . D 3 HOH 10 34 34 HOH HOH A . D 3 HOH 11 36 36 HOH HOH A . D 3 HOH 12 37 37 HOH HOH A . D 3 HOH 13 41 41 HOH HOH A . D 3 HOH 14 45 45 HOH HOH A . D 3 HOH 15 47 47 HOH HOH A . D 3 HOH 16 49 49 HOH HOH A . D 3 HOH 17 51 51 HOH HOH A . D 3 HOH 18 58 58 HOH HOH A . D 3 HOH 19 59 59 HOH HOH A . D 3 HOH 20 63 63 HOH HOH A . D 3 HOH 21 64 64 HOH HOH A . D 3 HOH 22 65 65 HOH HOH A . D 3 HOH 23 66 66 HOH HOH A . D 3 HOH 24 67 67 HOH HOH A . D 3 HOH 25 68 68 HOH HOH A . D 3 HOH 26 69 69 HOH HOH A . D 3 HOH 27 70 70 HOH HOH A . D 3 HOH 28 71 71 HOH HOH A . D 3 HOH 29 72 72 HOH HOH A . D 3 HOH 30 73 73 HOH HOH A . D 3 HOH 31 74 74 HOH HOH A . D 3 HOH 32 77 77 HOH HOH A . D 3 HOH 33 80 80 HOH HOH A . D 3 HOH 34 81 81 HOH HOH A . D 3 HOH 35 82 82 HOH HOH A . D 3 HOH 36 83 83 HOH HOH A . D 3 HOH 37 85 85 HOH HOH A . D 3 HOH 38 86 86 HOH HOH A . D 3 HOH 39 89 89 HOH HOH A . E 3 HOH 1 10 10 HOH HOH B . E 3 HOH 2 11 11 HOH HOH B . E 3 HOH 3 13 13 HOH HOH B . E 3 HOH 4 14 14 HOH HOH B . E 3 HOH 5 15 15 HOH HOH B . E 3 HOH 6 17 17 HOH HOH B . E 3 HOH 7 22 22 HOH HOH B . E 3 HOH 8 23 23 HOH HOH B . E 3 HOH 9 24 24 HOH HOH B . E 3 HOH 10 27 27 HOH HOH B . E 3 HOH 11 28 28 HOH HOH B . E 3 HOH 12 30 30 HOH HOH B . E 3 HOH 13 31 31 HOH HOH B . E 3 HOH 14 32 32 HOH HOH B . E 3 HOH 15 33 33 HOH HOH B . E 3 HOH 16 35 35 HOH HOH B . E 3 HOH 17 38 38 HOH HOH B . E 3 HOH 18 39 39 HOH HOH B . E 3 HOH 19 40 40 HOH HOH B . E 3 HOH 20 42 42 HOH HOH B . E 3 HOH 21 43 43 HOH HOH B . E 3 HOH 22 44 44 HOH HOH B . E 3 HOH 23 46 46 HOH HOH B . E 3 HOH 24 48 48 HOH HOH B . E 3 HOH 25 50 50 HOH HOH B . E 3 HOH 26 52 52 HOH HOH B . E 3 HOH 27 53 53 HOH HOH B . E 3 HOH 28 54 54 HOH HOH B . E 3 HOH 29 55 55 HOH HOH B . E 3 HOH 30 56 56 HOH HOH B . E 3 HOH 31 57 57 HOH HOH B . E 3 HOH 32 60 60 HOH HOH B . E 3 HOH 33 61 61 HOH HOH B . E 3 HOH 34 62 62 HOH HOH B . E 3 HOH 35 75 75 HOH HOH B . E 3 HOH 36 76 76 HOH HOH B . E 3 HOH 37 78 78 HOH HOH B . E 3 HOH 38 79 79 HOH HOH B . E 3 HOH 39 84 84 HOH HOH B . E 3 HOH 40 87 87 HOH HOH B . E 3 HOH 41 88 88 HOH HOH B . E 3 HOH 42 90 90 HOH HOH B . E 3 HOH 43 91 91 HOH HOH B . E 3 HOH 44 92 92 HOH HOH B . # _software.name NUCLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 1D32 _cell.length_a 26.880 _cell.length_b 26.880 _cell.length_c 82.600 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D32 _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 # _exptl.entry_id 1D32 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.13 _exptl_crystal.density_percent_sol 60.70 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details 'ROOM TEMPERATURE' _exptl_crystal_grow.pH 6.00 _exptl_crystal_grow.pdbx_details 'pH 6.00, VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 'NA CACODYLATE' ? ? ? 1 4 1 'NH4 ACETATE' ? ? ? 1 5 1 SPERMINE ? ? ? 1 6 1 MGCL2 ? ? ? 1 7 2 WATER ? ? ? 1 8 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 273.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type 'RIGAKU AFC-5' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1D32 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 3.000 _reflns.d_resolution_low ? _reflns.d_resolution_high 1.700 _reflns.number_obs 2211 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1D32 _refine.ls_number_reflns_obs 542 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 3.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 2.000 _refine.ls_d_res_high 1.700 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.2250000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 158 _refine_hist.pdbx_number_atoms_ligand 54 _refine_hist.number_atoms_solvent 83 _refine_hist.number_atoms_total 295 _refine_hist.d_res_high 1.700 _refine_hist.d_res_low 2.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function n_bond_d 0.019 ? ? ? 'X-RAY DIFFRACTION' ? n_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_planar_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_bond_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_dihedral_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_impr_tor ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_plane_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_chiral_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_singtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? n_multtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? n_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1D32 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1D32 _struct.title 'DRUG-INDUCED DNA REPAIR: X-RAY STRUCTURE OF A DNA-DITERCALINIUM COMPLEX' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1D32 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1D32 _struct_ref.pdbx_db_accession 1D32 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1D32 A 1 ? 4 ? 1D32 1 ? 4 ? 1 4 2 1 1D32 B 1 ? 4 ? 1D32 5 ? 8 ? 5 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 1 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 1 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 1 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 2 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 2 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 2 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 3 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 3 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 3 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 4 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 4 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 4 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A DIT 9 ? 13 'BINDING SITE FOR RESIDUE DIT A 9' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 13 DC A 1 ? DC A 1 . ? 1_555 ? 2 AC1 13 DG A 2 ? DG A 2 . ? 1_555 ? 3 AC1 13 DC A 3 ? DC A 3 . ? 1_555 ? 4 AC1 13 DG A 4 ? DG A 4 . ? 1_555 ? 5 AC1 13 HOH D . ? HOH A 18 . ? 1_555 ? 6 AC1 13 HOH D . ? HOH A 41 . ? 1_555 ? 7 AC1 13 HOH D . ? HOH A 69 . ? 1_555 ? 8 AC1 13 DC B 1 ? DC B 5 . ? 1_555 ? 9 AC1 13 DG B 2 ? DG B 6 . ? 1_555 ? 10 AC1 13 DC B 3 ? DC B 7 . ? 5_655 ? 11 AC1 13 DC B 3 ? DC B 7 . ? 1_555 ? 12 AC1 13 DG B 4 ? DG B 8 . ? 5_655 ? 13 AC1 13 DG B 4 ? DG B 8 . ? 1_555 ? # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 OP2 B DC 7 ? ? 1_555 O B HOH 43 ? ? 5_655 1.80 2 1 OP2 B DG 6 ? ? 1_555 O B HOH 30 ? ? 5_655 2.18 3 1 OP1 B DC 7 ? ? 1_555 O A HOH 89 ? ? 5_645 2.19 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P A DG 2 ? ? "O5'" A DG 2 ? ? 1.655 1.593 0.062 0.010 N 2 1 C6 A DG 2 ? ? N1 A DG 2 ? ? 1.337 1.391 -0.054 0.007 N 3 1 C2 A DG 2 ? ? N2 A DG 2 ? ? 1.232 1.341 -0.109 0.010 N 4 1 "C5'" A DG 4 ? ? "C4'" A DG 4 ? ? 1.555 1.512 0.043 0.007 N 5 1 "C2'" A DG 4 ? ? "C1'" A DG 4 ? ? 1.590 1.519 0.071 0.010 N 6 1 C6 A DG 4 ? ? N1 A DG 4 ? ? 1.338 1.391 -0.053 0.007 N 7 1 C2 A DG 4 ? ? N2 A DG 4 ? ? 1.234 1.341 -0.107 0.010 N 8 1 P B DG 6 ? ? "O5'" B DG 6 ? ? 1.654 1.593 0.061 0.010 N 9 1 "O3'" B DG 6 ? ? "C3'" B DG 6 ? ? 1.315 1.419 -0.104 0.006 N 10 1 C6 B DG 6 ? ? N1 B DG 6 ? ? 1.330 1.391 -0.061 0.007 N 11 1 C8 B DG 6 ? ? N9 B DG 6 ? ? 1.326 1.374 -0.048 0.007 N 12 1 C2 B DG 6 ? ? N2 B DG 6 ? ? 1.235 1.341 -0.106 0.010 N 13 1 P B DC 7 ? ? "O5'" B DC 7 ? ? 1.662 1.593 0.069 0.010 N 14 1 N3 B DC 7 ? ? C4 B DC 7 ? ? 1.397 1.335 0.062 0.007 N 15 1 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? 1.532 1.420 0.112 0.011 N 16 1 N7 B DG 8 ? ? C8 B DG 8 ? ? 1.344 1.305 0.039 0.006 N 17 1 C2 B DG 8 ? ? N2 B DG 8 ? ? 1.216 1.341 -0.125 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? 101.10 104.50 -3.40 0.40 N 2 1 "C1'" A DC 1 ? ? "O4'" A DC 1 ? ? "C4'" A DC 1 ? ? 115.54 110.30 5.24 0.70 N 3 1 N1 A DC 1 ? ? "C1'" A DC 1 ? ? "C2'" A DC 1 ? ? 127.24 114.30 12.94 1.40 N 4 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 102.10 108.00 -5.90 0.70 N 5 1 C2 A DC 1 ? ? N3 A DC 1 ? ? C4 A DC 1 ? ? 123.11 119.90 3.21 0.50 N 6 1 N3 A DC 1 ? ? C4 A DC 1 ? ? C5 A DC 1 ? ? 118.65 121.90 -3.25 0.40 N 7 1 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 124.20 118.90 5.30 0.60 N 8 1 C5 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 126.70 120.20 6.50 0.70 N 9 1 OP1 A DG 2 ? ? P A DG 2 ? ? OP2 A DG 2 ? ? 129.28 119.60 9.68 1.50 N 10 1 "O5'" A DG 2 ? ? P A DG 2 ? ? OP2 A DG 2 ? ? 98.57 105.70 -7.13 0.90 N 11 1 P A DG 2 ? ? "O5'" A DG 2 ? ? "C5'" A DG 2 ? ? 107.37 120.90 -13.53 1.60 N 12 1 "O4'" A DG 2 ? ? "C4'" A DG 2 ? ? "C3'" A DG 2 ? ? 101.79 104.50 -2.71 0.40 N 13 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 114.79 108.30 6.49 0.30 N 14 1 C6 A DG 2 ? ? N1 A DG 2 ? ? C2 A DG 2 ? ? 118.12 125.10 -6.98 0.60 N 15 1 N1 A DG 2 ? ? C2 A DG 2 ? ? N3 A DG 2 ? ? 130.39 123.90 6.49 0.60 N 16 1 C5 A DG 2 ? ? C6 A DG 2 ? ? N1 A DG 2 ? ? 118.03 111.50 6.53 0.50 N 17 1 N3 A DG 2 ? ? C2 A DG 2 ? ? N2 A DG 2 ? ? 109.36 119.90 -10.54 0.70 N 18 1 C5 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 123.20 128.60 -5.40 0.60 N 19 1 P A DC 3 ? ? "O5'" A DC 3 ? ? "C5'" A DC 3 ? ? 106.60 120.90 -14.30 1.60 N 20 1 C2 A DC 3 ? ? N3 A DC 3 ? ? C4 A DC 3 ? ? 125.52 119.90 5.62 0.50 N 21 1 N3 A DC 3 ? ? C4 A DC 3 ? ? C5 A DC 3 ? ? 116.57 121.90 -5.33 0.40 N 22 1 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 122.51 118.90 3.61 0.60 N 23 1 "O5'" A DG 4 ? ? "C5'" A DG 4 ? ? "C4'" A DG 4 ? ? 100.43 109.40 -8.97 0.80 N 24 1 P A DG 4 ? ? "O5'" A DG 4 ? ? "C5'" A DG 4 ? ? 106.08 120.90 -14.82 1.60 N 25 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? "C2'" A DG 4 ? ? 100.30 105.90 -5.60 0.80 N 26 1 C6 A DG 4 ? ? N1 A DG 4 ? ? C2 A DG 4 ? ? 117.63 125.10 -7.47 0.60 N 27 1 N1 A DG 4 ? ? C2 A DG 4 ? ? N3 A DG 4 ? ? 129.88 123.90 5.98 0.60 N 28 1 C5 A DG 4 ? ? C6 A DG 4 ? ? N1 A DG 4 ? ? 119.21 111.50 7.71 0.50 N 29 1 N3 A DG 4 ? ? C2 A DG 4 ? ? N2 A DG 4 ? ? 108.74 119.90 -11.16 0.70 N 30 1 C5 A DG 4 ? ? C6 A DG 4 ? ? O6 A DG 4 ? ? 122.88 128.60 -5.72 0.60 N 31 1 "O4'" B DC 5 ? ? "C4'" B DC 5 ? ? "C3'" B DC 5 ? ? 99.47 104.50 -5.03 0.40 N 32 1 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 102.75 108.00 -5.25 0.70 N 33 1 C2 B DC 5 ? ? N3 B DC 5 ? ? C4 B DC 5 ? ? 123.78 119.90 3.88 0.50 N 34 1 N3 B DC 5 ? ? C4 B DC 5 ? ? C5 B DC 5 ? ? 117.29 121.90 -4.61 0.40 N 35 1 C5 B DC 5 ? ? C6 B DC 5 ? ? N1 B DC 5 ? ? 124.41 121.00 3.41 0.50 N 36 1 N1 B DC 5 ? ? C2 B DC 5 ? ? O2 B DC 5 ? ? 123.53 118.90 4.63 0.60 N 37 1 "O5'" B DG 6 ? ? P B DG 6 ? ? OP1 B DG 6 ? ? 99.25 105.70 -6.45 0.90 N 38 1 P B DG 6 ? ? "O5'" B DG 6 ? ? "C5'" B DG 6 ? ? 111.17 120.90 -9.73 1.60 N 39 1 "O4'" B DG 6 ? ? "C1'" B DG 6 ? ? N9 B DG 6 ? ? 112.50 108.30 4.20 0.30 N 40 1 C6 B DG 6 ? ? N1 B DG 6 ? ? C2 B DG 6 ? ? 119.57 125.10 -5.53 0.60 N 41 1 N1 B DG 6 ? ? C2 B DG 6 ? ? N3 B DG 6 ? ? 128.98 123.90 5.08 0.60 N 42 1 C5 B DG 6 ? ? C6 B DG 6 ? ? N1 B DG 6 ? ? 117.48 111.50 5.98 0.50 N 43 1 N3 B DG 6 ? ? C2 B DG 6 ? ? N2 B DG 6 ? ? 109.60 119.90 -10.30 0.70 N 44 1 C5 B DG 6 ? ? C6 B DG 6 ? ? O6 B DG 6 ? ? 123.06 128.60 -5.54 0.60 N 45 1 "C3'" B DG 6 ? ? "O3'" B DG 6 ? ? P B DC 7 ? ? 134.35 119.70 14.65 1.20 Y 46 1 "O5'" B DC 7 ? ? P B DC 7 ? ? OP1 B DC 7 ? ? 98.19 105.70 -7.51 0.90 N 47 1 P B DC 7 ? ? "O5'" B DC 7 ? ? "C5'" B DC 7 ? ? 104.67 120.90 -16.23 1.60 N 48 1 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1 B DC 7 ? ? 111.35 108.30 3.05 0.30 N 49 1 N3 B DC 7 ? ? C4 B DC 7 ? ? C5 B DC 7 ? ? 119.16 121.90 -2.74 0.40 N 50 1 N1 B DC 7 ? ? C2 B DC 7 ? ? O2 B DC 7 ? ? 124.17 118.90 5.27 0.60 N 51 1 C5 B DC 7 ? ? C4 B DC 7 ? ? N4 B DC 7 ? ? 125.82 120.20 5.62 0.70 N 52 1 C2 B DC 7 ? ? N1 B DC 7 ? ? "C1'" B DC 7 ? ? 111.99 118.80 -6.81 1.10 N 53 1 "C3'" B DC 7 ? ? "O3'" B DC 7 ? ? P B DG 8 ? ? 132.71 119.70 13.01 1.20 Y 54 1 C6 B DG 8 ? ? N1 B DG 8 ? ? C2 B DG 8 ? ? 117.87 125.10 -7.23 0.60 N 55 1 N1 B DG 8 ? ? C2 B DG 8 ? ? N3 B DG 8 ? ? 129.56 123.90 5.66 0.60 N 56 1 C5 B DG 8 ? ? C6 B DG 8 ? ? N1 B DG 8 ? ? 118.48 111.50 6.98 0.50 N 57 1 N3 B DG 8 ? ? C2 B DG 8 ? ? N2 B DG 8 ? ? 109.53 119.90 -10.37 0.70 N 58 1 C5 B DG 8 ? ? C6 B DG 8 ? ? O6 B DG 8 ? ? 123.61 128.60 -4.99 0.60 N # _struct_site_keywords.site_id 1 _struct_site_keywords.text BIS-INTERCALATION # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL DRUG ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL DRUG ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DC OP3 O N N 1 DC P P N N 2 DC OP1 O N N 3 DC OP2 O N N 4 DC "O5'" O N N 5 DC "C5'" C N N 6 DC "C4'" C N R 7 DC "O4'" O N N 8 DC "C3'" C N S 9 DC "O3'" O N N 10 DC "C2'" C N N 11 DC "C1'" C N R 12 DC N1 N N N 13 DC C2 C N N 14 DC O2 O N N 15 DC N3 N N N 16 DC C4 C N N 17 DC N4 N N N 18 DC C5 C N N 19 DC C6 C N N 20 DC HOP3 H N N 21 DC HOP2 H N N 22 DC "H5'" H N N 23 DC "H5''" H N N 24 DC "H4'" H N N 25 DC "H3'" H N N 26 DC "HO3'" H N N 27 DC "H2'" H N N 28 DC "H2''" H N N 29 DC "H1'" H N N 30 DC H41 H N N 31 DC H42 H N N 32 DC H5 H N N 33 DC H6 H N N 34 DG OP3 O N N 35 DG P P N N 36 DG OP1 O N N 37 DG OP2 O N N 38 DG "O5'" O N N 39 DG "C5'" C N N 40 DG "C4'" C N R 41 DG "O4'" O N N 42 DG "C3'" C N S 43 DG "O3'" O N N 44 DG "C2'" C N N 45 DG "C1'" C N R 46 DG N9 N Y N 47 DG C8 C Y N 48 DG N7 N Y N 49 DG C5 C Y N 50 DG C6 C N N 51 DG O6 O N N 52 DG N1 N N N 53 DG C2 C N N 54 DG N2 N N N 55 DG N3 N N N 56 DG C4 C Y N 57 DG HOP3 H N N 58 DG HOP2 H N N 59 DG "H5'" H N N 60 DG "H5''" H N N 61 DG "H4'" H N N 62 DG "H3'" H N N 63 DG "HO3'" H N N 64 DG "H2'" H N N 65 DG "H2''" H N N 66 DG "H1'" H N N 67 DG H8 H N N 68 DG H1 H N N 69 DG H21 H N N 70 DG H22 H N N 71 DIT C1 C Y N 72 DIT N2 N Y N 73 DIT C3 C Y N 74 DIT C4 C Y N 75 DIT C5 C Y N 76 DIT C6 C Y N 77 DIT N7 N Y N 78 DIT C8 C Y N 79 DIT C9 C Y N 80 DIT C10 C Y N 81 DIT O10 O N N 82 DIT C11 C Y N 83 DIT C12 C Y N 84 DIT C13 C Y N 85 DIT C14 C Y N 86 DIT C15 C Y N 87 DIT C16 C Y N 88 DIT C17 C Y N 89 DIT C18 C N N 90 DIT C19 C N N 91 DIT C20 C N N 92 DIT N21 N N N 93 DIT C22 C N N 94 DIT C23 C N N 95 DIT C24 C N N 96 DIT C25 C N N 97 DIT C26 C N N 98 DIT C1X C Y N 99 DIT N2X N Y N 100 DIT C3X C Y N 101 DIT C4X C Y N 102 DIT C5X C Y N 103 DIT C6X C Y N 104 DIT N7X N Y N 105 DIT C8X C Y N 106 DIT C9X C Y N 107 DIT CAX C Y N 108 DIT OAX O N N 109 DIT CBX C Y N 110 DIT CCX C Y N 111 DIT CDX C Y N 112 DIT CEX C Y N 113 DIT CFX C Y N 114 DIT CGX C Y N 115 DIT CHX C Y N 116 DIT CIX C N N 117 DIT CJX C N N 118 DIT CKX C N N 119 DIT NLX N N N 120 DIT CMX C N N 121 DIT CNX C N N 122 DIT COX C N N 123 DIT CPX C N N 124 DIT CQX C N N 125 DIT H1 H N N 126 DIT H3 H N N 127 DIT H4 H N N 128 DIT H5 H N N 129 DIT H6 H N N 130 DIT HN7 H N N 131 DIT H8 H N N 132 DIT H9 H N N 133 DIT H11 H N N 134 DIT H181 H N N 135 DIT H182 H N N 136 DIT H183 H N N 137 DIT H191 H N N 138 DIT H192 H N N 139 DIT H201 H N N 140 DIT H202 H N N 141 DIT H221 H N N 142 DIT H222 H N N 143 DIT H231 H N N 144 DIT H232 H N N 145 DIT H24 H N N 146 DIT H251 H N N 147 DIT H252 H N N 148 DIT H261 H N N 149 DIT H262 H N N 150 DIT H1X H N N 151 DIT H3X H N N 152 DIT H4X H N N 153 DIT H5X H N N 154 DIT H6X H N N 155 DIT HN7X H N N 156 DIT H8X H N N 157 DIT H9X H N N 158 DIT H11X H N N 159 DIT HX81 H N N 160 DIT HX82 H N N 161 DIT HX83 H N N 162 DIT HX91 H N N 163 DIT HX92 H N N 164 DIT HX01 H N N 165 DIT HX02 H N N 166 DIT HX21 H N N 167 DIT HX22 H N N 168 DIT HX31 H N N 169 DIT HX32 H N N 170 DIT H24X H N N 171 DIT HX51 H N N 172 DIT HX52 H N N 173 DIT HX61 H N N 174 DIT HX62 H N N 175 HOH O O N N 176 HOH H1 H N N 177 HOH H2 H N N 178 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DC OP3 P sing N N 1 DC OP3 HOP3 sing N N 2 DC P OP1 doub N N 3 DC P OP2 sing N N 4 DC P "O5'" sing N N 5 DC OP2 HOP2 sing N N 6 DC "O5'" "C5'" sing N N 7 DC "C5'" "C4'" sing N N 8 DC "C5'" "H5'" sing N N 9 DC "C5'" "H5''" sing N N 10 DC "C4'" "O4'" sing N N 11 DC "C4'" "C3'" sing N N 12 DC "C4'" "H4'" sing N N 13 DC "O4'" "C1'" sing N N 14 DC "C3'" "O3'" sing N N 15 DC "C3'" "C2'" sing N N 16 DC "C3'" "H3'" sing N N 17 DC "O3'" "HO3'" sing N N 18 DC "C2'" "C1'" sing N N 19 DC "C2'" "H2'" sing N N 20 DC "C2'" "H2''" sing N N 21 DC "C1'" N1 sing N N 22 DC "C1'" "H1'" sing N N 23 DC N1 C2 sing N N 24 DC N1 C6 sing N N 25 DC C2 O2 doub N N 26 DC C2 N3 sing N N 27 DC N3 C4 doub N N 28 DC C4 N4 sing N N 29 DC C4 C5 sing N N 30 DC N4 H41 sing N N 31 DC N4 H42 sing N N 32 DC C5 C6 doub N N 33 DC C5 H5 sing N N 34 DC C6 H6 sing N N 35 DG OP3 P sing N N 36 DG OP3 HOP3 sing N N 37 DG P OP1 doub N N 38 DG P OP2 sing N N 39 DG P "O5'" sing N N 40 DG OP2 HOP2 sing N N 41 DG "O5'" "C5'" sing N N 42 DG "C5'" "C4'" sing N N 43 DG "C5'" "H5'" sing N N 44 DG "C5'" "H5''" sing N N 45 DG "C4'" "O4'" sing N N 46 DG "C4'" "C3'" sing N N 47 DG "C4'" "H4'" sing N N 48 DG "O4'" "C1'" sing N N 49 DG "C3'" "O3'" sing N N 50 DG "C3'" "C2'" sing N N 51 DG "C3'" "H3'" sing N N 52 DG "O3'" "HO3'" sing N N 53 DG "C2'" "C1'" sing N N 54 DG "C2'" "H2'" sing N N 55 DG "C2'" "H2''" sing N N 56 DG "C1'" N9 sing N N 57 DG "C1'" "H1'" sing N N 58 DG N9 C8 sing Y N 59 DG N9 C4 sing Y N 60 DG C8 N7 doub Y N 61 DG C8 H8 sing N N 62 DG N7 C5 sing Y N 63 DG C5 C6 sing N N 64 DG C5 C4 doub Y N 65 DG C6 O6 doub N N 66 DG C6 N1 sing N N 67 DG N1 C2 sing N N 68 DG N1 H1 sing N N 69 DG C2 N2 sing N N 70 DG C2 N3 doub N N 71 DG N2 H21 sing N N 72 DG N2 H22 sing N N 73 DG N3 C4 sing N N 74 DIT C1 N2 doub Y N 75 DIT C1 C17 sing Y N 76 DIT C1 H1 sing N N 77 DIT N2 C3 sing Y N 78 DIT N2 C19 sing N N 79 DIT C3 C4 doub Y N 80 DIT C3 H3 sing N N 81 DIT C4 C12 sing Y N 82 DIT C4 H4 sing N N 83 DIT C5 C6 doub Y N 84 DIT C5 C12 sing Y N 85 DIT C5 H5 sing N N 86 DIT C6 C13 sing Y N 87 DIT C6 H6 sing N N 88 DIT N7 C13 sing Y N 89 DIT N7 C14 sing Y N 90 DIT N7 HN7 sing N N 91 DIT C8 C9 doub Y N 92 DIT C8 C14 sing Y N 93 DIT C8 H8 sing N N 94 DIT C9 C10 sing Y N 95 DIT C9 H9 sing N N 96 DIT C10 O10 sing N N 97 DIT C10 C11 doub Y N 98 DIT O10 C18 sing N N 99 DIT C11 C15 sing Y N 100 DIT C11 H11 sing N N 101 DIT C12 C17 doub Y N 102 DIT C13 C16 doub Y N 103 DIT C14 C15 doub Y N 104 DIT C15 C16 sing Y N 105 DIT C16 C17 sing Y N 106 DIT C18 H181 sing N N 107 DIT C18 H182 sing N N 108 DIT C18 H183 sing N N 109 DIT C19 C20 sing N N 110 DIT C19 H191 sing N N 111 DIT C19 H192 sing N N 112 DIT C20 N21 sing N N 113 DIT C20 H201 sing N N 114 DIT C20 H202 sing N N 115 DIT N21 C22 sing N N 116 DIT N21 C26 sing N N 117 DIT C22 C23 sing N N 118 DIT C22 H221 sing N N 119 DIT C22 H222 sing N N 120 DIT C23 C24 sing N N 121 DIT C23 H231 sing N N 122 DIT C23 H232 sing N N 123 DIT C24 C25 sing N N 124 DIT C24 COX sing N N 125 DIT C24 H24 sing N N 126 DIT C25 C26 sing N N 127 DIT C25 H251 sing N N 128 DIT C25 H252 sing N N 129 DIT C26 H261 sing N N 130 DIT C26 H262 sing N N 131 DIT C1X N2X doub Y N 132 DIT C1X CHX sing Y N 133 DIT C1X H1X sing N N 134 DIT N2X C3X sing Y N 135 DIT N2X CJX sing N N 136 DIT C3X C4X doub Y N 137 DIT C3X H3X sing N N 138 DIT C4X CCX sing Y N 139 DIT C4X H4X sing N N 140 DIT C5X C6X doub Y N 141 DIT C5X CCX sing Y N 142 DIT C5X H5X sing N N 143 DIT C6X CDX sing Y N 144 DIT C6X H6X sing N N 145 DIT N7X CDX sing Y N 146 DIT N7X CEX sing Y N 147 DIT N7X HN7X sing N N 148 DIT C8X C9X doub Y N 149 DIT C8X CEX sing Y N 150 DIT C8X H8X sing N N 151 DIT C9X CAX sing Y N 152 DIT C9X H9X sing N N 153 DIT CAX OAX sing N N 154 DIT CAX CBX doub Y N 155 DIT OAX CIX sing N N 156 DIT CBX CFX sing Y N 157 DIT CBX H11X sing N N 158 DIT CCX CHX doub Y N 159 DIT CDX CGX doub Y N 160 DIT CEX CFX doub Y N 161 DIT CFX CGX sing Y N 162 DIT CGX CHX sing Y N 163 DIT CIX HX81 sing N N 164 DIT CIX HX82 sing N N 165 DIT CIX HX83 sing N N 166 DIT CJX CKX sing N N 167 DIT CJX HX91 sing N N 168 DIT CJX HX92 sing N N 169 DIT CKX NLX sing N N 170 DIT CKX HX01 sing N N 171 DIT CKX HX02 sing N N 172 DIT NLX CMX sing N N 173 DIT NLX CQX sing N N 174 DIT CMX CNX sing N N 175 DIT CMX HX21 sing N N 176 DIT CMX HX22 sing N N 177 DIT CNX COX sing N N 178 DIT CNX HX31 sing N N 179 DIT CNX HX32 sing N N 180 DIT COX CPX sing N N 181 DIT COX H24X sing N N 182 DIT CPX CQX sing N N 183 DIT CPX HX51 sing N N 184 DIT CPX HX52 sing N N 185 DIT CQX HX61 sing N N 186 DIT CQX HX62 sing N N 187 HOH O H1 sing N N 188 HOH O H2 sing N N 189 # _ndb_struct_conf_na.entry_id 1D32 _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 4 1_555 0.105 -0.150 0.077 -4.617 -7.918 3.109 1 A_DC1:DG8_B A 1 ? B 8 ? 19 1 1 A DG 2 1_555 B DC 3 1_555 -0.161 -0.246 -0.457 -6.748 1.251 1.489 2 A_DG2:DC7_B A 2 ? B 7 ? 19 1 1 A DC 3 1_555 B DG 2 1_555 0.100 -0.317 -0.084 -5.517 8.242 -1.180 3 A_DC3:DG6_B A 3 ? B 6 ? 19 1 1 A DG 4 1_555 B DC 1 1_555 0.005 -0.276 0.000 -4.803 -5.227 0.229 4 A_DG4:DC5_B A 4 ? B 5 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 4 1_555 A DG 2 1_555 B DC 3 1_555 -0.010 -0.125 6.913 2.185 -0.616 22.362 0.159 1.729 6.881 -1.583 -5.616 22.476 1 AA_DC1DG2:DC7DG8_BB A 1 ? B 8 ? A 2 ? B 7 ? 1 A DG 2 1_555 B DC 3 1_555 A DC 3 1_555 B DG 2 1_555 0.204 0.282 3.616 -3.841 -8.564 28.951 2.411 -1.230 3.344 -16.589 7.440 30.404 2 AA_DG2DC3:DG6DC7_BB A 2 ? B 7 ? A 3 ? B 6 ? 1 A DC 3 1_555 B DG 2 1_555 A DG 4 1_555 B DC 1 1_555 -0.750 -0.469 6.740 -0.257 -0.977 20.884 -0.433 1.840 6.763 -2.694 0.709 20.908 3 AA_DC3DG4:DC5DG6_BB A 3 ? B 6 ? A 4 ? B 5 ? # _atom_sites.entry_id 1D32 _atom_sites.fract_transf_matrix[1][1] 0.037202 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.037202 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012107 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_