data_1D4R # _entry.id 1D4R # _audit.revision_id 1 _audit.creation_date 1999-12-02 _audit.update_record 'initial release' # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1D4R pdb_00001d4r 10.2210/pdb1d4r/pdb NDB AR0024 ? ? RCSB RCSB009791 ? ? WWPDB D_1000009791 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-12-02 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_conn_type 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 22 4 'Structure model' '_pdbx_struct_conn_angle.value' 23 4 'Structure model' '_struct_conn.conn_type_id' 24 4 'Structure model' '_struct_conn.id' 25 4 'Structure model' '_struct_conn.pdbx_dist_value' 26 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 27 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 28 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 29 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 30 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 31 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 32 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 33 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 34 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 35 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 36 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 37 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 38 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 39 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 40 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 41 4 'Structure model' '_struct_conn.ptnr2_symmetry' 42 4 'Structure model' '_struct_conn_type.id' 43 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 44 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 45 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1D4R _pdbx_database_status.recvd_initial_deposition_date 1999-10-05 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry N _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wild, K.' 1 'Weichenrieder, O.' 2 'Leonard, G.A.' 3 'Cusack, S.' 4 # _citation.id primary _citation.title 'The 2 A structure of helix 6 of the human signal recognition particle RNA' _citation.journal_abbrev 'Structure Fold.Des.' _citation.journal_volume 7 _citation.page_first 1345 _citation.page_last 1352 _citation.year 1999 _citation.journal_id_ASTM FODEFH _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 1263 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10574798 _citation.pdbx_database_id_DOI '10.1016/S0969-2126(00)80024-6' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wild, K.' 1 ? primary 'Weichenrieder, O.' 2 ? primary 'Leonard, G.A.' 3 ? primary 'Cusack, S.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn '29-MER OF MODIFIED SRP RNA HELIX 6' 9550.621 1 ? C28U 'NON-NATIVE DUPLEX' ? 2 polymer syn '29-MER OF MODIFIED SRP RNA HELIX 6' 9488.656 2 ? C28U 'NON-NATIVE DUPLEX' ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 5 ? ? ? ? 4 water nat water 18.015 122 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no yes '(GDP)GUGACCUCCCGGGAGCGGGGGACCACU(A23)' GGUGACCUCCCGGGAGCGGGGGACCACUA A ? 2 polyribonucleotide no yes '(GDP)GUGACCUCCCGGGAGCGGGGGACCACUA' GGUGACCUCCCGGGAGCGGGGGACCACUA B,C ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GDP n 1 2 G n 1 3 U n 1 4 G n 1 5 A n 1 6 C n 1 7 C n 1 8 U n 1 9 C n 1 10 C n 1 11 C n 1 12 G n 1 13 G n 1 14 G n 1 15 A n 1 16 G n 1 17 C n 1 18 G n 1 19 G n 1 20 G n 1 21 G n 1 22 G n 1 23 A n 1 24 C n 1 25 C n 1 26 A n 1 27 C n 1 28 U n 1 29 A23 n 2 1 GDP n 2 2 G n 2 3 U n 2 4 G n 2 5 A n 2 6 C n 2 7 C n 2 8 U n 2 9 C n 2 10 C n 2 11 C n 2 12 G n 2 13 G n 2 14 G n 2 15 A n 2 16 G n 2 17 C n 2 18 G n 2 19 G n 2 20 G n 2 21 G n 2 22 G n 2 23 A n 2 24 C n 2 25 C n 2 26 A n 2 27 C n 2 28 U n 2 29 A n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? ;THE RNA WAS PRODUCED BY T7 RNA POLYMERASE IN VITRO TRANSCRIPTION USING RIBOZYME TECHNOLOGY. THIS SEQUENCE OCCURS NATURALLY IN HUMANS ; 2 1 sample ? ? ? ? ? ;THE RNA WAS PRODUCED BY T7 RNA POLYMERASE IN VITRO TRANSCRIPTION USING RIBOZYME TECHNOLOGY. THIS SEQUENCE OCCURS NATURALLY IN HUMANS ; # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 A23 'RNA linking' n ;ADENOSINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE ; ? 'C10 H13 N5 O9 P2' 409.186 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GDP 'RNA linking' n "GUANOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O11 P2' 443.201 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GDP 1 1 1 GDP GDP A . n A 1 2 G 2 2 2 G G A . n A 1 3 U 3 3 3 U U A . n A 1 4 G 4 4 4 G G A . n A 1 5 A 5 5 5 A A A . n A 1 6 C 6 6 6 C C A . n A 1 7 C 7 7 7 C C A . n A 1 8 U 8 8 8 U U A . n A 1 9 C 9 9 9 C C A . n A 1 10 C 10 10 10 C C A . n A 1 11 C 11 11 11 C C A . n A 1 12 G 12 12 12 G G A . n A 1 13 G 13 13 13 G G A . n A 1 14 G 14 14 14 G G A . n A 1 15 A 15 15 15 A A A . n A 1 16 G 16 16 16 G G A . n A 1 17 C 17 17 17 C C A . n A 1 18 G 18 18 18 G G A . n A 1 19 G 19 19 19 G G A . n A 1 20 G 20 20 20 G G A . n A 1 21 G 21 21 21 G G A . n A 1 22 G 22 22 22 G G A . n A 1 23 A 23 23 23 A A A . n A 1 24 C 24 24 24 C C A . n A 1 25 C 25 25 25 C C A . n A 1 26 A 26 26 26 A A A . n A 1 27 C 27 27 27 C C A . n A 1 28 U 28 28 28 U U A . n A 1 29 A23 29 29 29 A23 A23 A . n B 2 1 GDP 1 1 1 GDP GDP B . n B 2 2 G 2 2 2 G G B . n B 2 3 U 3 3 3 U U B . n B 2 4 G 4 4 4 G G B . n B 2 5 A 5 5 5 A A B . n B 2 6 C 6 6 6 C C B . n B 2 7 C 7 7 7 C C B . n B 2 8 U 8 8 8 U U B . n B 2 9 C 9 9 9 C C B . n B 2 10 C 10 10 10 C C B . n B 2 11 C 11 11 11 C C B . n B 2 12 G 12 12 12 G G B . n B 2 13 G 13 13 13 G G B . n B 2 14 G 14 14 14 G G B . n B 2 15 A 15 15 15 A A B . n B 2 16 G 16 16 16 G G B . n B 2 17 C 17 17 17 C C B . n B 2 18 G 18 18 18 G G B . n B 2 19 G 19 19 19 G G B . n B 2 20 G 20 20 20 G G B . n B 2 21 G 21 21 21 G G B . n B 2 22 G 22 22 22 G G B . n B 2 23 A 23 23 23 A A B . n B 2 24 C 24 24 24 C C B . n B 2 25 C 25 25 25 C C B . n B 2 26 A 26 26 26 A A B . n B 2 27 C 27 27 27 C C B . n B 2 28 U 28 28 28 U U B . n B 2 29 A 29 29 29 A A B . n C 2 1 GDP 1 1 1 GDP GDP C . n C 2 2 G 2 2 2 G G C . n C 2 3 U 3 3 3 U U C . n C 2 4 G 4 4 4 G G C . n C 2 5 A 5 5 5 A A C . n C 2 6 C 6 6 6 C C C . n C 2 7 C 7 7 7 C C C . n C 2 8 U 8 8 8 U U C . n C 2 9 C 9 9 9 C C C . n C 2 10 C 10 10 10 C C C . n C 2 11 C 11 11 11 C C C . n C 2 12 G 12 12 12 G G C . n C 2 13 G 13 13 13 G G C . n C 2 14 G 14 14 14 G G C . n C 2 15 A 15 15 15 A A C . n C 2 16 G 16 16 16 G G C . n C 2 17 C 17 17 17 C C C . n C 2 18 G 18 18 18 G G C . n C 2 19 G 19 19 19 G G C . n C 2 20 G 20 20 20 G G C . n C 2 21 G 21 21 21 G G C . n C 2 22 G 22 22 22 G G C . n C 2 23 A 23 23 23 A A C . n C 2 24 C 24 24 24 C C C . n C 2 25 C 25 25 25 C C C . n C 2 26 A 26 26 26 A A C . n C 2 27 C 27 27 27 C C C . n C 2 28 U 28 28 28 U U C . n C 2 29 A 29 29 29 A A C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 MG 1 304 304 MG MO3 A . E 3 MG 1 305 305 MG MO3 A . F 3 MG 1 302 302 MG MO4 B . G 3 MG 1 303 303 MG MO3 B . H 3 MG 1 301 301 MG MO4 C . I 4 HOH 1 101 101 HOH HOH A . I 4 HOH 2 109 109 HOH HOH A . I 4 HOH 3 110 110 HOH HOH A . I 4 HOH 4 111 111 HOH HOH A . I 4 HOH 5 112 112 HOH HOH A . I 4 HOH 6 115 115 HOH HOH A . I 4 HOH 7 116 116 HOH HOH A . I 4 HOH 8 121 121 HOH HOH A . I 4 HOH 9 123 123 HOH HOH A . I 4 HOH 10 126 126 HOH HOH A . I 4 HOH 11 127 127 HOH HOH A . I 4 HOH 12 128 128 HOH HOH A . I 4 HOH 13 129 129 HOH HOH A . I 4 HOH 14 131 131 HOH HOH A . I 4 HOH 15 132 132 HOH HOH A . I 4 HOH 16 133 133 HOH HOH A . I 4 HOH 17 134 134 HOH HOH A . I 4 HOH 18 136 136 HOH HOH A . I 4 HOH 19 139 139 HOH HOH A . I 4 HOH 20 141 141 HOH HOH A . I 4 HOH 21 145 145 HOH HOH A . I 4 HOH 22 147 147 HOH HOH A . I 4 HOH 23 150 150 HOH HOH A . I 4 HOH 24 158 158 HOH HOH A . I 4 HOH 25 161 161 HOH HOH A . I 4 HOH 26 165 165 HOH HOH A . I 4 HOH 27 170 170 HOH HOH A . I 4 HOH 28 173 173 HOH HOH A . I 4 HOH 29 175 175 HOH HOH A . I 4 HOH 30 176 176 HOH HOH A . I 4 HOH 31 181 181 HOH HOH A . I 4 HOH 32 182 182 HOH HOH A . I 4 HOH 33 184 184 HOH HOH A . I 4 HOH 34 185 185 HOH HOH A . I 4 HOH 35 186 186 HOH HOH A . I 4 HOH 36 189 189 HOH HOH A . I 4 HOH 37 193 193 HOH HOH A . I 4 HOH 38 195 195 HOH HOH A . I 4 HOH 39 196 196 HOH HOH A . I 4 HOH 40 200 200 HOH HOH A . I 4 HOH 41 201 201 HOH HOH A . I 4 HOH 42 203 203 HOH HOH A . I 4 HOH 43 205 205 HOH HOH A . I 4 HOH 44 315 303 HOH MO3 A . I 4 HOH 45 316 303 HOH MO3 A . I 4 HOH 46 317 304 HOH MO3 A . I 4 HOH 47 318 304 HOH MO3 A . I 4 HOH 48 319 304 HOH MO3 A . I 4 HOH 49 320 305 HOH MO3 A . I 4 HOH 50 321 305 HOH MO3 A . I 4 HOH 51 322 305 HOH MO3 A . J 4 HOH 1 103 103 HOH HOH B . J 4 HOH 2 104 104 HOH HOH B . J 4 HOH 3 106 106 HOH HOH B . J 4 HOH 4 108 108 HOH HOH B . J 4 HOH 5 113 113 HOH HOH B . J 4 HOH 6 117 117 HOH HOH B . J 4 HOH 7 118 118 HOH HOH B . J 4 HOH 8 125 125 HOH HOH B . J 4 HOH 9 130 130 HOH HOH B . J 4 HOH 10 140 140 HOH HOH B . J 4 HOH 11 142 142 HOH HOH B . J 4 HOH 12 144 144 HOH HOH B . J 4 HOH 13 146 146 HOH HOH B . J 4 HOH 14 148 148 HOH HOH B . J 4 HOH 15 149 149 HOH HOH B . J 4 HOH 16 151 151 HOH HOH B . J 4 HOH 17 153 153 HOH HOH B . J 4 HOH 18 157 157 HOH HOH B . J 4 HOH 19 163 163 HOH HOH B . J 4 HOH 20 166 166 HOH HOH B . J 4 HOH 21 167 167 HOH HOH B . J 4 HOH 22 169 169 HOH HOH B . J 4 HOH 23 172 172 HOH HOH B . J 4 HOH 24 174 174 HOH HOH B . J 4 HOH 25 179 179 HOH HOH B . J 4 HOH 26 180 180 HOH HOH B . J 4 HOH 27 191 191 HOH HOH B . J 4 HOH 28 192 192 HOH HOH B . J 4 HOH 29 197 197 HOH HOH B . J 4 HOH 30 199 199 HOH HOH B . J 4 HOH 31 204 204 HOH HOH B . J 4 HOH 32 310 302 HOH MO4 B . J 4 HOH 33 311 302 HOH MO4 B . J 4 HOH 34 312 302 HOH MO4 B . J 4 HOH 35 313 302 HOH MO4 B . J 4 HOH 36 314 303 HOH MO3 B . K 4 HOH 1 102 102 HOH HOH C . K 4 HOH 2 105 105 HOH HOH C . K 4 HOH 3 107 107 HOH HOH C . K 4 HOH 4 114 114 HOH HOH C . K 4 HOH 5 119 119 HOH HOH C . K 4 HOH 6 120 120 HOH HOH C . K 4 HOH 7 122 122 HOH HOH C . K 4 HOH 8 124 124 HOH HOH C . K 4 HOH 9 135 135 HOH HOH C . K 4 HOH 10 137 137 HOH HOH C . K 4 HOH 11 138 138 HOH HOH C . K 4 HOH 12 143 143 HOH HOH C . K 4 HOH 13 152 152 HOH HOH C . K 4 HOH 14 154 154 HOH HOH C . K 4 HOH 15 155 155 HOH HOH C . K 4 HOH 16 156 156 HOH HOH C . K 4 HOH 17 159 159 HOH HOH C . K 4 HOH 18 160 160 HOH HOH C . K 4 HOH 19 162 162 HOH HOH C . K 4 HOH 20 164 164 HOH HOH C . K 4 HOH 21 168 168 HOH HOH C . K 4 HOH 22 171 171 HOH HOH C . K 4 HOH 23 177 177 HOH HOH C . K 4 HOH 24 178 178 HOH HOH C . K 4 HOH 25 183 183 HOH HOH C . K 4 HOH 26 187 187 HOH HOH C . K 4 HOH 27 188 188 HOH HOH C . K 4 HOH 28 190 190 HOH HOH C . K 4 HOH 29 194 194 HOH HOH C . K 4 HOH 30 198 198 HOH HOH C . K 4 HOH 31 202 202 HOH HOH C . K 4 HOH 32 306 301 HOH MO4 C . K 4 HOH 33 307 301 HOH MO4 C . K 4 HOH 34 308 301 HOH MO4 C . K 4 HOH 35 309 301 HOH MO4 C . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B A 29 ? "C5'" ? B A 29 "C5'" 2 1 Y 1 B A 29 ? "C4'" ? B A 29 "C4'" 3 1 Y 1 B A 29 ? "O4'" ? B A 29 "O4'" 4 1 Y 1 B A 29 ? "C3'" ? B A 29 "C3'" 5 1 Y 1 B A 29 ? "O3'" ? B A 29 "O3'" 6 1 Y 1 B A 29 ? "C2'" ? B A 29 "C2'" 7 1 Y 1 B A 29 ? "O2'" ? B A 29 "O2'" 8 1 Y 1 B A 29 ? "C1'" ? B A 29 "C1'" 9 1 Y 1 B A 29 ? N9 ? B A 29 N9 10 1 Y 1 B A 29 ? C8 ? B A 29 C8 11 1 Y 1 B A 29 ? N7 ? B A 29 N7 12 1 Y 1 B A 29 ? C5 ? B A 29 C5 13 1 Y 1 B A 29 ? C6 ? B A 29 C6 14 1 Y 1 B A 29 ? N6 ? B A 29 N6 15 1 Y 1 B A 29 ? N1 ? B A 29 N1 16 1 Y 1 B A 29 ? C2 ? B A 29 C2 17 1 Y 1 B A 29 ? N3 ? B A 29 N3 18 1 Y 1 B A 29 ? C4 ? B A 29 C4 19 1 Y 1 C GDP 1 ? N9 ? C GDP 1 N9 20 1 Y 1 C GDP 1 ? C8 ? C GDP 1 C8 21 1 Y 1 C GDP 1 ? N7 ? C GDP 1 N7 22 1 Y 1 C GDP 1 ? C5 ? C GDP 1 C5 23 1 Y 1 C GDP 1 ? C6 ? C GDP 1 C6 24 1 Y 1 C GDP 1 ? O6 ? C GDP 1 O6 25 1 Y 1 C GDP 1 ? N1 ? C GDP 1 N1 26 1 Y 1 C GDP 1 ? C2 ? C GDP 1 C2 27 1 Y 1 C GDP 1 ? N2 ? C GDP 1 N2 28 1 Y 1 C GDP 1 ? N3 ? C GDP 1 N3 29 1 Y 1 C GDP 1 ? C4 ? C GDP 1 C4 30 1 Y 1 C A 29 ? "C5'" ? C A 29 "C5'" 31 1 Y 1 C A 29 ? "C4'" ? C A 29 "C4'" 32 1 Y 1 C A 29 ? "O4'" ? C A 29 "O4'" 33 1 Y 1 C A 29 ? "C3'" ? C A 29 "C3'" 34 1 Y 1 C A 29 ? "O3'" ? C A 29 "O3'" 35 1 Y 1 C A 29 ? "C2'" ? C A 29 "C2'" 36 1 Y 1 C A 29 ? "O2'" ? C A 29 "O2'" 37 1 Y 1 C A 29 ? "C1'" ? C A 29 "C1'" 38 1 Y 1 C A 29 ? N9 ? C A 29 N9 39 1 Y 1 C A 29 ? C8 ? C A 29 C8 40 1 Y 1 C A 29 ? N7 ? C A 29 N7 41 1 Y 1 C A 29 ? C5 ? C A 29 C5 42 1 Y 1 C A 29 ? C6 ? C A 29 C6 43 1 Y 1 C A 29 ? N6 ? C A 29 N6 44 1 Y 1 C A 29 ? N1 ? C A 29 N1 45 1 Y 1 C A 29 ? C2 ? C A 29 C2 46 1 Y 1 C A 29 ? N3 ? C A 29 N3 47 1 Y 1 C A 29 ? C4 ? C A 29 C4 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MOSFLM 'data reduction' . ? 1 TRUNCATE 'data reduction' . ? 2 SOLVE phasing . ? 3 CNS refinement . ? 4 CCP4 'data scaling' '(TRUNCATE)' ? 5 # _cell.entry_id 1D4R _cell.length_a 42.980 _cell.length_b 42.980 _cell.length_c 231.420 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1D4R _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting trigonal _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1D4R _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 43.13 _exptl_crystal.density_Matthews 2.16 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_details ;100 MM MGCL2, 1 MM SPERMINE TETRAHYDROCHLORIDE, 50 MM MES, 15-20% (W/V) PEG 8000, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MGCL2 ? ? ? 1 2 1 'SPERMINE TETRAHYDROCHLORIDE' ? ? ? 1 3 1 MES ? ? ? 1 4 1 'PEG 8000' ? ? ? 1 5 2 'PEG 8000' ? ? ? 1 6 2 MGCL2 ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 1998-12-07 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.93 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.pdbx_wavelength 0.93 _diffrn_source.pdbx_wavelength_list ? _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-4' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-4 # _reflns.entry_id 1D4R _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 76 _reflns.d_resolution_high 2.0 _reflns.number_obs 17877 _reflns.number_all 17877 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.051 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 6.4 _reflns.B_iso_Wilson_estimate 38.8 _reflns.pdbx_redundancy 4.8 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.05 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.398 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 3.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1D4R _refine.ls_number_reflns_obs 17808 _refine.ls_number_reflns_all 17808 _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 929754.01 _refine.pdbx_data_cutoff_low_absF 0.00 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 38.57 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 99.7 _refine.ls_R_factor_obs 0.264 _refine.ls_R_factor_all 0.275 _refine.ls_R_factor_R_work 0.264 _refine.ls_R_factor_R_free 0.288 _refine.ls_R_factor_R_free_error 0.010 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 859 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 59.4 _refine.aniso_B[1][1] 8.72 _refine.aniso_B[2][2] 8.72 _refine.aniso_B[3][3] -17.45 _refine.aniso_B[1][2] 1.23 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.374 _refine.solvent_model_param_bsol 67.59 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'NO RESTRAINTS WERE USED FOR NCS OR RNA GEOMETRY' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1D4R _refine_analyze.Luzzati_coordinate_error_obs 0.37 _refine_analyze.Luzzati_sigma_a_obs 0.43 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.51 _refine_analyze.Luzzati_sigma_a_free 0.59 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2030 _refine_hist.pdbx_number_atoms_ligand 25 _refine_hist.number_atoms_solvent 122 _refine_hist.number_atoms_total 2177 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 38.57 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 0.92 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 0.0 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.54 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.00 _refine_ls_shell.d_res_low 2.13 _refine_ls_shell.number_reflns_R_work 2756 _refine_ls_shell.R_factor_R_work 0.403 _refine_ls_shell.percent_reflns_obs 99.6 _refine_ls_shell.R_factor_R_free 0.457 _refine_ls_shell.R_factor_R_free_error 0.038 _refine_ls_shell.percent_reflns_R_free 5.0 _refine_ls_shell.number_reflns_R_free 144 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 DNA-RNA-ALLATOM-MOD.PARAM DNA-RNA-ALLATOM-MOD.TOP 'X-RAY DIFFRACTION' 2 MG-MOD.PARAM MG-MOD.TOP 'X-RAY DIFFRACTION' 3 WATER_REP.PARA WATER.TOP 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 1D4R _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1D4R _struct.title '29-mer fragment of human srp rna helix 6' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1D4R _struct_keywords.pdbx_keywords RNA _struct_keywords.text ;A-RNA HELIX, GGAG/GAGG BULGE, AC/CA TANDEM MISMATCH, GU WOBBLE BASE PAIRS, 2'3' -CYCLIC PHOSPHATE, RNA ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 4 ? J N N 4 ? K N N 4 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 1D4R 1D4R ? ? ? 2 2 PDB 1D4R 1D4R ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1D4R A 1 ? 29 ? 1D4R 1 ? 29 ? 1 29 2 2 1D4R B 1 ? 29 ? 1D4R 1 ? 29 ? 1 29 3 2 1D4R C 1 ? 29 ? 1D4R 1 ? 29 ? 1 29 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,D,E,F,G,I,J 2 1,2 C,H,K # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 77.1400000000 # loop_ _struct_biol.id _struct_biol.pdbx_parent_biol_id _struct_biol.details 1 ? ? 2 ? ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GDP 1 "O3'" ? ? ? 1_555 A G 2 P ? ? A GDP 1 A G 2 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale2 covale both ? A U 28 "O3'" ? ? ? 1_555 A A23 29 P ? ? A U 28 A A23 29 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale3 covale both ? B GDP 1 "O3'" ? ? ? 1_555 B G 2 P ? ? B GDP 1 B G 2 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale4 covale both ? C GDP 1 "O3'" ? ? ? 1_555 C G 2 P ? ? C GDP 1 C G 2 1_555 ? ? ? ? ? ? ? 1.608 ? ? metalc1 metalc ? ? A GDP 1 N7 ? ? ? 1_555 D MG . MG ? ? A GDP 1 A MG 304 1_555 ? ? ? ? ? ? ? 2.862 ? ? metalc2 metalc ? ? D MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 304 A HOH 317 1_555 ? ? ? ? ? ? ? 2.101 ? ? metalc3 metalc ? ? D MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 304 A HOH 318 1_555 ? ? ? ? ? ? ? 2.096 ? ? metalc4 metalc ? ? D MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 304 A HOH 319 1_555 ? ? ? ? ? ? ? 2.104 ? ? metalc5 metalc ? ? E MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 305 A HOH 320 1_555 ? ? ? ? ? ? ? 2.094 ? ? metalc6 metalc ? ? E MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 305 A HOH 321 1_555 ? ? ? ? ? ? ? 2.104 ? ? metalc7 metalc ? ? E MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 305 A HOH 322 1_555 ? ? ? ? ? ? ? 2.102 ? ? metalc8 metalc ? ? E MG . MG ? ? ? 1_555 B GDP 1 O2A ? ? A MG 305 B GDP 1 2_545 ? ? ? ? ? ? ? 2.724 ? ? metalc9 metalc ? ? E MG . MG ? ? ? 1_555 B G 2 N7 ? ? A MG 305 B G 2 2_545 ? ? ? ? ? ? ? 3.111 ? ? metalc10 metalc ? ? I HOH . O ? ? ? 1_555 G MG . MG ? ? A HOH 315 B MG 303 1_555 ? ? ? ? ? ? ? 2.105 ? ? metalc11 metalc ? ? I HOH . O ? ? ? 1_555 G MG . MG ? ? A HOH 316 B MG 303 1_555 ? ? ? ? ? ? ? 2.102 ? ? metalc12 metalc ? ? B G 19 N7 ? ? ? 1_555 F MG . MG ? ? B G 19 B MG 302 1_555 ? ? ? ? ? ? ? 2.872 ? ? metalc13 metalc ? ? F MG . MG ? ? ? 1_555 J HOH . O ? ? B MG 302 B HOH 310 1_555 ? ? ? ? ? ? ? 2.102 ? ? metalc14 metalc ? ? F MG . MG ? ? ? 1_555 J HOH . O ? ? B MG 302 B HOH 311 1_555 ? ? ? ? ? ? ? 2.106 ? ? metalc15 metalc ? ? F MG . MG ? ? ? 1_555 J HOH . O ? ? B MG 302 B HOH 312 1_555 ? ? ? ? ? ? ? 2.103 ? ? metalc16 metalc ? ? F MG . MG ? ? ? 1_555 J HOH . O ? ? B MG 302 B HOH 313 1_555 ? ? ? ? ? ? ? 2.095 ? ? metalc17 metalc ? ? G MG . MG ? ? ? 1_555 J HOH . O ? ? B MG 303 B HOH 314 1_555 ? ? ? ? ? ? ? 2.101 ? ? metalc18 metalc ? ? H MG . MG ? ? ? 1_555 K HOH . O ? ? C MG 301 C HOH 306 1_555 ? ? ? ? ? ? ? 2.098 ? ? metalc19 metalc ? ? H MG . MG ? ? ? 1_555 K HOH . O ? ? C MG 301 C HOH 307 1_555 ? ? ? ? ? ? ? 2.103 ? ? metalc20 metalc ? ? H MG . MG ? ? ? 1_555 K HOH . O ? ? C MG 301 C HOH 308 1_555 ? ? ? ? ? ? ? 2.105 ? ? metalc21 metalc ? ? H MG . MG ? ? ? 1_555 K HOH . O ? ? C MG 301 C HOH 309 1_555 ? ? ? ? ? ? ? 2.104 ? ? hydrog1 hydrog ? ? A GDP 1 N1 ? ? ? 1_555 B U 28 O2 ? ? A GDP 1 B U 28 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog2 hydrog ? ? A GDP 1 O6 ? ? ? 1_555 B U 28 N3 ? ? A GDP 1 B U 28 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog3 hydrog ? ? A G 2 N1 ? ? ? 1_555 B C 27 N3 ? ? A G 2 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N2 ? ? ? 1_555 B C 27 O2 ? ? A G 2 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 O6 ? ? ? 1_555 B C 27 N4 ? ? A G 2 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A U 3 N3 ? ? ? 1_555 B A 26 N1 ? ? A U 3 B A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 3 O4 ? ? ? 1_555 B A 26 N6 ? ? A U 3 B A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 4 N1 ? ? ? 1_555 B C 25 N3 ? ? A G 4 B C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N2 ? ? ? 1_555 B C 25 O2 ? ? A G 4 B C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 O6 ? ? ? 1_555 B C 25 N4 ? ? A G 4 B C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 5 N6 ? ? ? 1_555 B C 24 O2 ? ? A A 5 B C 24 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog12 hydrog ? ? A C 6 N4 ? ? ? 1_555 B A 23 N1 ? ? A C 6 B A 23 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog13 hydrog ? ? A C 7 N3 ? ? ? 1_555 B G 22 N1 ? ? A C 7 B G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 7 N4 ? ? ? 1_555 B G 22 O6 ? ? A C 7 B G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 7 O2 ? ? ? 1_555 B G 22 N2 ? ? A C 7 B G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 8 N3 ? ? ? 1_555 B G 21 O6 ? ? A U 8 B G 21 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog17 hydrog ? ? A U 8 O2 ? ? ? 1_555 B G 21 N1 ? ? A U 8 B G 21 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog18 hydrog ? ? A C 9 N3 ? ? ? 1_555 B G 20 N1 ? ? A C 9 B G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 9 N4 ? ? ? 1_555 B G 20 O6 ? ? A C 9 B G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 9 O2 ? ? ? 1_555 B G 20 N2 ? ? A C 9 B G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 10 N3 ? ? ? 1_555 B G 19 N1 ? ? A C 10 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 10 N4 ? ? ? 1_555 B G 19 O6 ? ? A C 10 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 10 O2 ? ? ? 1_555 B G 19 N2 ? ? A C 10 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 11 N3 ? ? ? 1_555 B G 18 N1 ? ? A C 11 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 11 N4 ? ? ? 1_555 B G 18 O6 ? ? A C 11 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 11 O2 ? ? ? 1_555 B G 18 N2 ? ? A C 11 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 12 N1 ? ? ? 1_555 B C 17 N3 ? ? A G 12 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 12 N2 ? ? ? 1_555 B C 17 O2 ? ? A G 12 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 12 O6 ? ? ? 1_555 B C 17 N4 ? ? A G 12 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 13 O6 ? ? ? 1_555 B G 16 N1 ? ? A G 13 B G 16 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog31 hydrog ? ? A G 14 O6 ? ? ? 1_555 B A 15 N6 ? ? A G 14 B A 15 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog32 hydrog ? ? A G 16 N1 ? ? ? 1_555 B G 13 O6 ? ? A G 16 B G 13 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog33 hydrog ? ? A C 17 N3 ? ? ? 1_555 B G 12 N1 ? ? A C 17 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 17 N4 ? ? ? 1_555 B G 12 O6 ? ? A C 17 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 17 O2 ? ? ? 1_555 B G 12 N2 ? ? A C 17 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 18 N1 ? ? ? 1_555 B C 11 N3 ? ? A G 18 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 18 N2 ? ? ? 1_555 B C 11 O2 ? ? A G 18 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 18 O6 ? ? ? 1_555 B C 11 N4 ? ? A G 18 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 19 N1 ? ? ? 1_555 B C 10 N3 ? ? A G 19 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 19 N2 ? ? ? 1_555 B C 10 O2 ? ? A G 19 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 19 O6 ? ? ? 1_555 B C 10 N4 ? ? A G 19 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 20 N1 ? ? ? 1_555 B C 9 N3 ? ? A G 20 B C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 20 N2 ? ? ? 1_555 B C 9 O2 ? ? A G 20 B C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 20 O6 ? ? ? 1_555 B C 9 N4 ? ? A G 20 B C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 21 N1 ? ? ? 1_555 B U 8 O2 ? ? A G 21 B U 8 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog46 hydrog ? ? A G 21 O6 ? ? ? 1_555 B U 8 N3 ? ? A G 21 B U 8 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog47 hydrog ? ? A G 22 N1 ? ? ? 1_555 B C 7 N3 ? ? A G 22 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 22 N2 ? ? ? 1_555 B C 7 O2 ? ? A G 22 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 22 O6 ? ? ? 1_555 B C 7 N4 ? ? A G 22 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A A 23 N6 ? ? ? 1_555 B C 6 N3 ? ? A A 23 B C 6 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog51 hydrog ? ? A C 24 N3 ? ? ? 1_555 B A 5 N6 ? ? A C 24 B A 5 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog52 hydrog ? ? A C 25 N3 ? ? ? 1_555 B G 4 N1 ? ? A C 25 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A C 25 N4 ? ? ? 1_555 B G 4 O6 ? ? A C 25 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A C 25 O2 ? ? ? 1_555 B G 4 N2 ? ? A C 25 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A A 26 N1 ? ? ? 1_555 B U 3 N3 ? ? A A 26 B U 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A A 26 N6 ? ? ? 1_555 B U 3 O4 ? ? A A 26 B U 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A C 27 N3 ? ? ? 1_555 B G 2 N1 ? ? A C 27 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A C 27 N4 ? ? ? 1_555 B G 2 O6 ? ? A C 27 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A C 27 O2 ? ? ? 1_555 B G 2 N2 ? ? A C 27 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A U 28 N3 ? ? ? 1_555 B GDP 1 O6 ? ? A U 28 B GDP 1 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog61 hydrog ? ? A U 28 O2 ? ? ? 1_555 B GDP 1 N1 ? ? A U 28 B GDP 1 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog62 hydrog ? ? C G 2 N1 ? ? ? 1_555 C C 27 N3 ? ? C G 2 C C 27 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? C G 2 N2 ? ? ? 1_555 C C 27 O2 ? ? C G 2 C C 27 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? C G 2 O6 ? ? ? 1_555 C C 27 N4 ? ? C G 2 C C 27 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? C U 3 N3 ? ? ? 1_555 C A 26 N1 ? ? C U 3 C A 26 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? C U 3 O4 ? ? ? 1_555 C A 26 N6 ? ? C U 3 C A 26 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? C G 4 N1 ? ? ? 1_555 C C 25 N3 ? ? C G 4 C C 25 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? C G 4 N2 ? ? ? 1_555 C C 25 O2 ? ? C G 4 C C 25 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? C G 4 O6 ? ? ? 1_555 C C 25 N4 ? ? C G 4 C C 25 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? C A 5 N6 ? ? ? 1_555 C C 24 N3 ? ? C A 5 C C 24 6_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog71 hydrog ? ? C C 6 N4 ? ? ? 1_555 C A 23 N1 ? ? C C 6 C A 23 6_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog72 hydrog ? ? C C 7 N3 ? ? ? 1_555 C G 22 N1 ? ? C C 7 C G 22 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? C C 7 N4 ? ? ? 1_555 C G 22 O6 ? ? C C 7 C G 22 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? C C 7 O2 ? ? ? 1_555 C G 22 N2 ? ? C C 7 C G 22 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? C U 8 N3 ? ? ? 1_555 C G 21 O6 ? ? C U 8 C G 21 6_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog76 hydrog ? ? C U 8 O2 ? ? ? 1_555 C G 21 N1 ? ? C U 8 C G 21 6_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog77 hydrog ? ? C C 9 N3 ? ? ? 1_555 C G 20 N1 ? ? C C 9 C G 20 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? C C 9 N4 ? ? ? 1_555 C G 20 O6 ? ? C C 9 C G 20 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? C C 9 O2 ? ? ? 1_555 C G 20 N2 ? ? C C 9 C G 20 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? C C 10 N3 ? ? ? 1_555 C G 19 N1 ? ? C C 10 C G 19 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? C C 10 N4 ? ? ? 1_555 C G 19 O6 ? ? C C 10 C G 19 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? C C 10 O2 ? ? ? 1_555 C G 19 N2 ? ? C C 10 C G 19 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? C C 11 N3 ? ? ? 1_555 C G 18 N1 ? ? C C 11 C G 18 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? C C 11 N4 ? ? ? 1_555 C G 18 O6 ? ? C C 11 C G 18 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? C C 11 O2 ? ? ? 1_555 C G 18 N2 ? ? C C 11 C G 18 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? C G 12 N1 ? ? ? 1_555 C C 17 N3 ? ? C G 12 C C 17 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? C G 12 N2 ? ? ? 1_555 C C 17 O2 ? ? C G 12 C C 17 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? C G 12 O6 ? ? ? 1_555 C C 17 N4 ? ? C G 12 C C 17 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? C G 13 O6 ? ? ? 1_555 C G 16 N1 ? ? C G 13 C G 16 6_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog90 hydrog ? ? C G 14 O6 ? ? ? 1_555 C A 15 N6 ? ? C G 14 C A 15 6_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog91 hydrog ? ? C A 15 N6 ? ? ? 1_555 C G 14 O6 ? ? C A 15 C G 14 6_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog92 hydrog ? ? C G 16 N1 ? ? ? 1_555 C G 13 O6 ? ? C G 16 C G 13 6_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog93 hydrog ? ? C C 17 N3 ? ? ? 1_555 C G 12 N1 ? ? C C 17 C G 12 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? C C 17 N4 ? ? ? 1_555 C G 12 O6 ? ? C C 17 C G 12 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? C C 17 O2 ? ? ? 1_555 C G 12 N2 ? ? C C 17 C G 12 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? C G 18 N1 ? ? ? 1_555 C C 11 N3 ? ? C G 18 C C 11 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? C G 18 N2 ? ? ? 1_555 C C 11 O2 ? ? C G 18 C C 11 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? C G 18 O6 ? ? ? 1_555 C C 11 N4 ? ? C G 18 C C 11 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? C G 19 N1 ? ? ? 1_555 C C 10 N3 ? ? C G 19 C C 10 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? C G 19 N2 ? ? ? 1_555 C C 10 O2 ? ? C G 19 C C 10 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? C G 19 O6 ? ? ? 1_555 C C 10 N4 ? ? C G 19 C C 10 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? C G 20 N1 ? ? ? 1_555 C C 9 N3 ? ? C G 20 C C 9 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? C G 20 N2 ? ? ? 1_555 C C 9 O2 ? ? C G 20 C C 9 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? C G 20 O6 ? ? ? 1_555 C C 9 N4 ? ? C G 20 C C 9 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? C G 21 N1 ? ? ? 1_555 C U 8 O2 ? ? C G 21 C U 8 6_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog106 hydrog ? ? C G 21 O6 ? ? ? 1_555 C U 8 N3 ? ? C G 21 C U 8 6_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog107 hydrog ? ? C G 22 N1 ? ? ? 1_555 C C 7 N3 ? ? C G 22 C C 7 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? C G 22 N2 ? ? ? 1_555 C C 7 O2 ? ? C G 22 C C 7 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? C G 22 O6 ? ? ? 1_555 C C 7 N4 ? ? C G 22 C C 7 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? C A 23 N1 ? ? ? 1_555 C C 6 N4 ? ? C A 23 C C 6 6_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog111 hydrog ? ? C C 24 N3 ? ? ? 1_555 C A 5 N6 ? ? C C 24 C A 5 6_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog112 hydrog ? ? C C 25 N3 ? ? ? 1_555 C G 4 N1 ? ? C C 25 C G 4 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog113 hydrog ? ? C C 25 N4 ? ? ? 1_555 C G 4 O6 ? ? C C 25 C G 4 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog114 hydrog ? ? C C 25 O2 ? ? ? 1_555 C G 4 N2 ? ? C C 25 C G 4 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog115 hydrog ? ? C A 26 N1 ? ? ? 1_555 C U 3 N3 ? ? C A 26 C U 3 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog116 hydrog ? ? C A 26 N6 ? ? ? 1_555 C U 3 O4 ? ? C A 26 C U 3 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog117 hydrog ? ? C C 27 N3 ? ? ? 1_555 C G 2 N1 ? ? C C 27 C G 2 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog118 hydrog ? ? C C 27 N4 ? ? ? 1_555 C G 2 O6 ? ? C C 27 C G 2 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog119 hydrog ? ? C C 27 O2 ? ? ? 1_555 C G 2 N2 ? ? C C 27 C G 2 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A GDP 1 ? A GDP 1 ? 1_555 MG ? D MG . ? A MG 304 ? 1_555 O ? I HOH . ? A HOH 317 ? 1_555 84.1 ? 2 N7 ? A GDP 1 ? A GDP 1 ? 1_555 MG ? D MG . ? A MG 304 ? 1_555 O ? I HOH . ? A HOH 318 ? 1_555 141.9 ? 3 O ? I HOH . ? A HOH 317 ? 1_555 MG ? D MG . ? A MG 304 ? 1_555 O ? I HOH . ? A HOH 318 ? 1_555 131.9 ? 4 N7 ? A GDP 1 ? A GDP 1 ? 1_555 MG ? D MG . ? A MG 304 ? 1_555 O ? I HOH . ? A HOH 319 ? 1_555 103.4 ? 5 O ? I HOH . ? A HOH 317 ? 1_555 MG ? D MG . ? A MG 304 ? 1_555 O ? I HOH . ? A HOH 319 ? 1_555 81.1 ? 6 O ? I HOH . ? A HOH 318 ? 1_555 MG ? D MG . ? A MG 304 ? 1_555 O ? I HOH . ? A HOH 319 ? 1_555 75.5 ? 7 O ? I HOH . ? A HOH 320 ? 1_555 MG ? E MG . ? A MG 305 ? 1_555 O ? I HOH . ? A HOH 321 ? 1_555 133.4 ? 8 O ? I HOH . ? A HOH 320 ? 1_555 MG ? E MG . ? A MG 305 ? 1_555 O ? I HOH . ? A HOH 322 ? 1_555 65.7 ? 9 O ? I HOH . ? A HOH 321 ? 1_555 MG ? E MG . ? A MG 305 ? 1_555 O ? I HOH . ? A HOH 322 ? 1_555 99.2 ? 10 O ? I HOH . ? A HOH 320 ? 1_555 MG ? E MG . ? A MG 305 ? 1_555 O2A ? B GDP 1 ? B GDP 1 ? 2_545 73.2 ? 11 O ? I HOH . ? A HOH 321 ? 1_555 MG ? E MG . ? A MG 305 ? 1_555 O2A ? B GDP 1 ? B GDP 1 ? 2_545 122.5 ? 12 O ? I HOH . ? A HOH 322 ? 1_555 MG ? E MG . ? A MG 305 ? 1_555 O2A ? B GDP 1 ? B GDP 1 ? 2_545 135.1 ? 13 O ? I HOH . ? A HOH 320 ? 1_555 MG ? E MG . ? A MG 305 ? 1_555 N7 ? B G 2 ? B G 2 ? 2_545 129.1 ? 14 O ? I HOH . ? A HOH 321 ? 1_555 MG ? E MG . ? A MG 305 ? 1_555 N7 ? B G 2 ? B G 2 ? 2_545 88.1 ? 15 O ? I HOH . ? A HOH 322 ? 1_555 MG ? E MG . ? A MG 305 ? 1_555 N7 ? B G 2 ? B G 2 ? 2_545 82.1 ? 16 O2A ? B GDP 1 ? B GDP 1 ? 2_545 MG ? E MG . ? A MG 305 ? 1_555 N7 ? B G 2 ? B G 2 ? 2_545 112.5 ? 17 O ? I HOH . ? A HOH 315 ? 1_555 MG ? G MG . ? B MG 303 ? 1_555 O ? I HOH . ? A HOH 316 ? 1_555 92.6 ? 18 O ? I HOH . ? A HOH 315 ? 1_555 MG ? G MG . ? B MG 303 ? 1_555 O ? J HOH . ? B HOH 314 ? 1_555 92.8 ? 19 O ? I HOH . ? A HOH 316 ? 1_555 MG ? G MG . ? B MG 303 ? 1_555 O ? J HOH . ? B HOH 314 ? 1_555 91.7 ? 20 N7 ? B G 19 ? B G 19 ? 1_555 MG ? F MG . ? B MG 302 ? 1_555 O ? J HOH . ? B HOH 310 ? 1_555 88.8 ? 21 N7 ? B G 19 ? B G 19 ? 1_555 MG ? F MG . ? B MG 302 ? 1_555 O ? J HOH . ? B HOH 311 ? 1_555 120.5 ? 22 O ? J HOH . ? B HOH 310 ? 1_555 MG ? F MG . ? B MG 302 ? 1_555 O ? J HOH . ? B HOH 311 ? 1_555 150.6 ? 23 N7 ? B G 19 ? B G 19 ? 1_555 MG ? F MG . ? B MG 302 ? 1_555 O ? J HOH . ? B HOH 312 ? 1_555 117.2 ? 24 O ? J HOH . ? B HOH 310 ? 1_555 MG ? F MG . ? B MG 302 ? 1_555 O ? J HOH . ? B HOH 312 ? 1_555 60.6 ? 25 O ? J HOH . ? B HOH 311 ? 1_555 MG ? F MG . ? B MG 302 ? 1_555 O ? J HOH . ? B HOH 312 ? 1_555 103.7 ? 26 N7 ? B G 19 ? B G 19 ? 1_555 MG ? F MG . ? B MG 302 ? 1_555 O ? J HOH . ? B HOH 313 ? 1_555 87.8 ? 27 O ? J HOH . ? B HOH 310 ? 1_555 MG ? F MG . ? B MG 302 ? 1_555 O ? J HOH . ? B HOH 313 ? 1_555 144.1 ? 28 O ? J HOH . ? B HOH 311 ? 1_555 MG ? F MG . ? B MG 302 ? 1_555 O ? J HOH . ? B HOH 313 ? 1_555 49.5 ? 29 O ? J HOH . ? B HOH 312 ? 1_555 MG ? F MG . ? B MG 302 ? 1_555 O ? J HOH . ? B HOH 313 ? 1_555 89.7 ? 30 O ? K HOH . ? C HOH 306 ? 1_555 MG ? H MG . ? C MG 301 ? 1_555 O ? K HOH . ? C HOH 307 ? 1_555 142.4 ? 31 O ? K HOH . ? C HOH 306 ? 1_555 MG ? H MG . ? C MG 301 ? 1_555 O ? K HOH . ? C HOH 308 ? 1_555 87.4 ? 32 O ? K HOH . ? C HOH 307 ? 1_555 MG ? H MG . ? C MG 301 ? 1_555 O ? K HOH . ? C HOH 308 ? 1_555 65.4 ? 33 O ? K HOH . ? C HOH 306 ? 1_555 MG ? H MG . ? C MG 301 ? 1_555 O ? K HOH . ? C HOH 309 ? 1_555 76.2 ? 34 O ? K HOH . ? C HOH 307 ? 1_555 MG ? H MG . ? C MG 301 ? 1_555 O ? K HOH . ? C HOH 309 ? 1_555 70.3 ? 35 O ? K HOH . ? C HOH 308 ? 1_555 MG ? H MG . ? C MG 301 ? 1_555 O ? K HOH . ? C HOH 309 ? 1_555 69.2 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software C MG 301 ? 4 'BINDING SITE FOR RESIDUE MG C 301' AC2 Software B MG 302 ? 5 'BINDING SITE FOR RESIDUE MG B 302' AC3 Software B MG 303 ? 3 'BINDING SITE FOR RESIDUE MG B 303' AC4 Software A MG 304 ? 5 'BINDING SITE FOR RESIDUE MG A 304' AC5 Software A MG 305 ? 5 'BINDING SITE FOR RESIDUE MG A 305' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 HOH K . ? HOH C 306 . ? 1_555 ? 2 AC1 4 HOH K . ? HOH C 307 . ? 1_555 ? 3 AC1 4 HOH K . ? HOH C 308 . ? 1_555 ? 4 AC1 4 HOH K . ? HOH C 309 . ? 1_555 ? 5 AC2 5 G B 19 ? G B 19 . ? 1_555 ? 6 AC2 5 HOH J . ? HOH B 310 . ? 1_555 ? 7 AC2 5 HOH J . ? HOH B 311 . ? 1_555 ? 8 AC2 5 HOH J . ? HOH B 312 . ? 1_555 ? 9 AC2 5 HOH J . ? HOH B 313 . ? 1_555 ? 10 AC3 3 HOH I . ? HOH A 315 . ? 1_555 ? 11 AC3 3 HOH I . ? HOH A 316 . ? 1_555 ? 12 AC3 3 HOH J . ? HOH B 314 . ? 1_555 ? 13 AC4 5 GDP A 1 ? GDP A 1 . ? 1_555 ? 14 AC4 5 HOH I . ? HOH A 317 . ? 1_555 ? 15 AC4 5 HOH I . ? HOH A 318 . ? 1_555 ? 16 AC4 5 HOH I . ? HOH A 319 . ? 1_555 ? 17 AC4 5 GDP B 1 ? GDP B 1 . ? 2_545 ? 18 AC5 5 HOH I . ? HOH A 320 . ? 1_555 ? 19 AC5 5 HOH I . ? HOH A 321 . ? 1_555 ? 20 AC5 5 HOH I . ? HOH A 322 . ? 1_555 ? 21 AC5 5 GDP B 1 ? GDP B 1 . ? 2_545 ? 22 AC5 5 G B 2 ? G B 2 . ? 2_545 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O B HOH 311 ? ? O B HOH 313 ? ? 1.76 2 1 O B HOH 310 ? ? O B HOH 312 ? ? 2.12 # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A GDP 1 A GDP 1 ? G "GUANOSINE-5'-DIPHOSPHATE" 2 A A23 29 A A23 29 ? A ? 3 B GDP 1 B GDP 1 ? G "GUANOSINE-5'-DIPHOSPHATE" 4 C GDP 1 C GDP 1 ? G "GUANOSINE-5'-DIPHOSPHATE" # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 A23 PC P N S 38 A23 O1C O N N 39 A23 O2C O N N 40 A23 P P N N 41 A23 OP1 O N N 42 A23 OP2 O N N 43 A23 OP3 O N N 44 A23 "O5'" O N N 45 A23 "C5'" C N N 46 A23 "C4'" C N R 47 A23 "O4'" O N N 48 A23 "C3'" C N R 49 A23 "O3'" O N N 50 A23 "C2'" C N R 51 A23 "O2'" O N N 52 A23 "C1'" C N R 53 A23 N9 N Y N 54 A23 C8 C Y N 55 A23 N7 N Y N 56 A23 C5 C Y N 57 A23 C6 C Y N 58 A23 N6 N N N 59 A23 N1 N Y N 60 A23 C2 C Y N 61 A23 N3 N Y N 62 A23 C4 C Y N 63 A23 HOC2 H N N 64 A23 HOP2 H N N 65 A23 HOP3 H N N 66 A23 "H5'" H N N 67 A23 "H5''" H N N 68 A23 "H4'" H N N 69 A23 "H3'" H N N 70 A23 "H2'" H N N 71 A23 "H1'" H N N 72 A23 H8 H N N 73 A23 HN61 H N N 74 A23 HN62 H N N 75 A23 H2 H N N 76 C OP3 O N N 77 C P P N N 78 C OP1 O N N 79 C OP2 O N N 80 C "O5'" O N N 81 C "C5'" C N N 82 C "C4'" C N R 83 C "O4'" O N N 84 C "C3'" C N S 85 C "O3'" O N N 86 C "C2'" C N R 87 C "O2'" O N N 88 C "C1'" C N R 89 C N1 N N N 90 C C2 C N N 91 C O2 O N N 92 C N3 N N N 93 C C4 C N N 94 C N4 N N N 95 C C5 C N N 96 C C6 C N N 97 C HOP3 H N N 98 C HOP2 H N N 99 C "H5'" H N N 100 C "H5''" H N N 101 C "H4'" H N N 102 C "H3'" H N N 103 C "HO3'" H N N 104 C "H2'" H N N 105 C "HO2'" H N N 106 C "H1'" H N N 107 C H41 H N N 108 C H42 H N N 109 C H5 H N N 110 C H6 H N N 111 G OP3 O N N 112 G P P N N 113 G OP1 O N N 114 G OP2 O N N 115 G "O5'" O N N 116 G "C5'" C N N 117 G "C4'" C N R 118 G "O4'" O N N 119 G "C3'" C N S 120 G "O3'" O N N 121 G "C2'" C N R 122 G "O2'" O N N 123 G "C1'" C N R 124 G N9 N Y N 125 G C8 C Y N 126 G N7 N Y N 127 G C5 C Y N 128 G C6 C N N 129 G O6 O N N 130 G N1 N N N 131 G C2 C N N 132 G N2 N N N 133 G N3 N N N 134 G C4 C Y N 135 G HOP3 H N N 136 G HOP2 H N N 137 G "H5'" H N N 138 G "H5''" H N N 139 G "H4'" H N N 140 G "H3'" H N N 141 G "HO3'" H N N 142 G "H2'" H N N 143 G "HO2'" H N N 144 G "H1'" H N N 145 G H8 H N N 146 G H1 H N N 147 G H21 H N N 148 G H22 H N N 149 GDP PB P N N 150 GDP O1B O N N 151 GDP O2B O N N 152 GDP O3B O N N 153 GDP O3A O N N 154 GDP PA P N N 155 GDP O1A O N N 156 GDP O2A O N N 157 GDP "O5'" O N N 158 GDP "C5'" C N N 159 GDP "C4'" C N R 160 GDP "O4'" O N N 161 GDP "C3'" C N S 162 GDP "O3'" O N N 163 GDP "C2'" C N R 164 GDP "O2'" O N N 165 GDP "C1'" C N R 166 GDP N9 N Y N 167 GDP C8 C Y N 168 GDP N7 N Y N 169 GDP C5 C Y N 170 GDP C6 C N N 171 GDP O6 O N N 172 GDP N1 N N N 173 GDP C2 C N N 174 GDP N2 N N N 175 GDP N3 N N N 176 GDP C4 C Y N 177 GDP HOB2 H N N 178 GDP HOB3 H N N 179 GDP HOA2 H N N 180 GDP "H5'" H N N 181 GDP "H5''" H N N 182 GDP "H4'" H N N 183 GDP "H3'" H N N 184 GDP "HO3'" H N N 185 GDP "H2'" H N N 186 GDP "HO2'" H N N 187 GDP "H1'" H N N 188 GDP H8 H N N 189 GDP HN1 H N N 190 GDP HN21 H N N 191 GDP HN22 H N N 192 HOH O O N N 193 HOH H1 H N N 194 HOH H2 H N N 195 MG MG MG N N 196 U OP3 O N N 197 U P P N N 198 U OP1 O N N 199 U OP2 O N N 200 U "O5'" O N N 201 U "C5'" C N N 202 U "C4'" C N R 203 U "O4'" O N N 204 U "C3'" C N S 205 U "O3'" O N N 206 U "C2'" C N R 207 U "O2'" O N N 208 U "C1'" C N R 209 U N1 N N N 210 U C2 C N N 211 U O2 O N N 212 U N3 N N N 213 U C4 C N N 214 U O4 O N N 215 U C5 C N N 216 U C6 C N N 217 U HOP3 H N N 218 U HOP2 H N N 219 U "H5'" H N N 220 U "H5''" H N N 221 U "H4'" H N N 222 U "H3'" H N N 223 U "HO3'" H N N 224 U "H2'" H N N 225 U "HO2'" H N N 226 U "H1'" H N N 227 U H3 H N N 228 U H5 H N N 229 U H6 H N N 230 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 A23 PC O1C doub N N 40 A23 PC O2C sing N N 41 A23 PC "O3'" sing N N 42 A23 PC "O2'" sing N N 43 A23 O2C HOC2 sing N N 44 A23 P OP1 doub N N 45 A23 P OP2 sing N N 46 A23 P OP3 sing N N 47 A23 P "O5'" sing N N 48 A23 OP2 HOP2 sing N N 49 A23 OP3 HOP3 sing N N 50 A23 "O5'" "C5'" sing N N 51 A23 "C5'" "C4'" sing N N 52 A23 "C5'" "H5'" sing N N 53 A23 "C5'" "H5''" sing N N 54 A23 "C4'" "O4'" sing N N 55 A23 "C4'" "C3'" sing N N 56 A23 "C4'" "H4'" sing N N 57 A23 "O4'" "C1'" sing N N 58 A23 "C3'" "O3'" sing N N 59 A23 "C3'" "C2'" sing N N 60 A23 "C3'" "H3'" sing N N 61 A23 "C2'" "O2'" sing N N 62 A23 "C2'" "C1'" sing N N 63 A23 "C2'" "H2'" sing N N 64 A23 "C1'" N9 sing N N 65 A23 "C1'" "H1'" sing N N 66 A23 N9 C8 sing Y N 67 A23 N9 C4 sing Y N 68 A23 C8 N7 doub Y N 69 A23 C8 H8 sing N N 70 A23 N7 C5 sing Y N 71 A23 C5 C6 sing Y N 72 A23 C5 C4 doub Y N 73 A23 C6 N6 sing N N 74 A23 C6 N1 doub Y N 75 A23 N6 HN61 sing N N 76 A23 N6 HN62 sing N N 77 A23 N1 C2 sing Y N 78 A23 C2 N3 doub Y N 79 A23 C2 H2 sing N N 80 A23 N3 C4 sing Y N 81 C OP3 P sing N N 82 C OP3 HOP3 sing N N 83 C P OP1 doub N N 84 C P OP2 sing N N 85 C P "O5'" sing N N 86 C OP2 HOP2 sing N N 87 C "O5'" "C5'" sing N N 88 C "C5'" "C4'" sing N N 89 C "C5'" "H5'" sing N N 90 C "C5'" "H5''" sing N N 91 C "C4'" "O4'" sing N N 92 C "C4'" "C3'" sing N N 93 C "C4'" "H4'" sing N N 94 C "O4'" "C1'" sing N N 95 C "C3'" "O3'" sing N N 96 C "C3'" "C2'" sing N N 97 C "C3'" "H3'" sing N N 98 C "O3'" "HO3'" sing N N 99 C "C2'" "O2'" sing N N 100 C "C2'" "C1'" sing N N 101 C "C2'" "H2'" sing N N 102 C "O2'" "HO2'" sing N N 103 C "C1'" N1 sing N N 104 C "C1'" "H1'" sing N N 105 C N1 C2 sing N N 106 C N1 C6 sing N N 107 C C2 O2 doub N N 108 C C2 N3 sing N N 109 C N3 C4 doub N N 110 C C4 N4 sing N N 111 C C4 C5 sing N N 112 C N4 H41 sing N N 113 C N4 H42 sing N N 114 C C5 C6 doub N N 115 C C5 H5 sing N N 116 C C6 H6 sing N N 117 G OP3 P sing N N 118 G OP3 HOP3 sing N N 119 G P OP1 doub N N 120 G P OP2 sing N N 121 G P "O5'" sing N N 122 G OP2 HOP2 sing N N 123 G "O5'" "C5'" sing N N 124 G "C5'" "C4'" sing N N 125 G "C5'" "H5'" sing N N 126 G "C5'" "H5''" sing N N 127 G "C4'" "O4'" sing N N 128 G "C4'" "C3'" sing N N 129 G "C4'" "H4'" sing N N 130 G "O4'" "C1'" sing N N 131 G "C3'" "O3'" sing N N 132 G "C3'" "C2'" sing N N 133 G "C3'" "H3'" sing N N 134 G "O3'" "HO3'" sing N N 135 G "C2'" "O2'" sing N N 136 G "C2'" "C1'" sing N N 137 G "C2'" "H2'" sing N N 138 G "O2'" "HO2'" sing N N 139 G "C1'" N9 sing N N 140 G "C1'" "H1'" sing N N 141 G N9 C8 sing Y N 142 G N9 C4 sing Y N 143 G C8 N7 doub Y N 144 G C8 H8 sing N N 145 G N7 C5 sing Y N 146 G C5 C6 sing N N 147 G C5 C4 doub Y N 148 G C6 O6 doub N N 149 G C6 N1 sing N N 150 G N1 C2 sing N N 151 G N1 H1 sing N N 152 G C2 N2 sing N N 153 G C2 N3 doub N N 154 G N2 H21 sing N N 155 G N2 H22 sing N N 156 G N3 C4 sing N N 157 GDP PB O1B doub N N 158 GDP PB O2B sing N N 159 GDP PB O3B sing N N 160 GDP PB O3A sing N N 161 GDP O2B HOB2 sing N N 162 GDP O3B HOB3 sing N N 163 GDP O3A PA sing N N 164 GDP PA O1A doub N N 165 GDP PA O2A sing N N 166 GDP PA "O5'" sing N N 167 GDP O2A HOA2 sing N N 168 GDP "O5'" "C5'" sing N N 169 GDP "C5'" "C4'" sing N N 170 GDP "C5'" "H5'" sing N N 171 GDP "C5'" "H5''" sing N N 172 GDP "C4'" "O4'" sing N N 173 GDP "C4'" "C3'" sing N N 174 GDP "C4'" "H4'" sing N N 175 GDP "O4'" "C1'" sing N N 176 GDP "C3'" "O3'" sing N N 177 GDP "C3'" "C2'" sing N N 178 GDP "C3'" "H3'" sing N N 179 GDP "O3'" "HO3'" sing N N 180 GDP "C2'" "O2'" sing N N 181 GDP "C2'" "C1'" sing N N 182 GDP "C2'" "H2'" sing N N 183 GDP "O2'" "HO2'" sing N N 184 GDP "C1'" N9 sing N N 185 GDP "C1'" "H1'" sing N N 186 GDP N9 C8 sing Y N 187 GDP N9 C4 sing Y N 188 GDP C8 N7 doub Y N 189 GDP C8 H8 sing N N 190 GDP N7 C5 sing Y N 191 GDP C5 C6 sing N N 192 GDP C5 C4 doub Y N 193 GDP C6 O6 doub N N 194 GDP C6 N1 sing N N 195 GDP N1 C2 sing N N 196 GDP N1 HN1 sing N N 197 GDP C2 N2 sing N N 198 GDP C2 N3 doub N N 199 GDP N2 HN21 sing N N 200 GDP N2 HN22 sing N N 201 GDP N3 C4 sing N N 202 HOH O H1 sing N N 203 HOH O H2 sing N N 204 U OP3 P sing N N 205 U OP3 HOP3 sing N N 206 U P OP1 doub N N 207 U P OP2 sing N N 208 U P "O5'" sing N N 209 U OP2 HOP2 sing N N 210 U "O5'" "C5'" sing N N 211 U "C5'" "C4'" sing N N 212 U "C5'" "H5'" sing N N 213 U "C5'" "H5''" sing N N 214 U "C4'" "O4'" sing N N 215 U "C4'" "C3'" sing N N 216 U "C4'" "H4'" sing N N 217 U "O4'" "C1'" sing N N 218 U "C3'" "O3'" sing N N 219 U "C3'" "C2'" sing N N 220 U "C3'" "H3'" sing N N 221 U "O3'" "HO3'" sing N N 222 U "C2'" "O2'" sing N N 223 U "C2'" "C1'" sing N N 224 U "C2'" "H2'" sing N N 225 U "O2'" "HO2'" sing N N 226 U "C1'" N1 sing N N 227 U "C1'" "H1'" sing N N 228 U N1 C2 sing N N 229 U N1 C6 sing N N 230 U C2 O2 doub N N 231 U C2 N3 sing N N 232 U N3 C4 sing N N 233 U N3 H3 sing N N 234 U C4 O4 doub N N 235 U C4 C5 sing N N 236 U C5 C6 doub N N 237 U C5 H5 sing N N 238 U C6 H6 sing N N 239 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1D4R 'double helix' 1D4R 'a-form double helix' 1D4R 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A GDP 1 1_555 B U 28 1_555 -2.300 -0.508 -0.107 -7.861 -13.268 1.354 1 A_GDP1:U28_B A 1 ? B 28 ? 28 1 1 A G 2 1_555 B C 27 1_555 0.013 -0.135 0.052 -1.564 -15.242 1.631 2 A_G2:C27_B A 2 ? B 27 ? 19 1 1 A U 3 1_555 B A 26 1_555 0.111 -0.238 0.014 -2.828 -10.516 2.422 3 A_U3:A26_B A 3 ? B 26 ? 20 1 1 A G 4 1_555 B C 25 1_555 -0.128 -0.289 0.104 -1.434 -16.839 2.476 4 A_G4:C25_B A 4 ? B 25 ? 19 1 1 A A 5 1_555 B C 24 1_555 -2.718 -0.483 0.143 2.590 -12.135 10.780 5 A_A5:C24_B A 5 ? B 24 ? ? 1 1 A C 6 1_555 B A 23 1_555 -1.526 0.528 -0.023 14.238 -17.246 17.616 6 A_C6:A23_B A 6 ? B 23 ? ? 1 1 A C 7 1_555 B G 22 1_555 0.725 -0.127 -0.014 4.393 -15.966 4.545 7 A_C7:G22_B A 7 ? B 22 ? 19 1 1 A U 8 1_555 B G 21 1_555 2.577 -0.795 -0.116 1.285 -11.207 2.826 8 A_U8:G21_B A 8 ? B 21 ? 28 ? 1 A C 9 1_555 B G 20 1_555 -0.323 -0.244 -0.215 10.768 -12.529 -0.648 9 A_C9:G20_B A 9 ? B 20 ? 19 1 1 A C 10 1_555 B G 19 1_555 0.029 -0.064 -0.238 10.932 -9.662 -2.351 10 A_C10:G19_B A 10 ? B 19 ? 19 1 1 A C 11 1_555 B G 18 1_555 -0.113 -0.205 -0.215 -1.848 -7.667 0.111 11 A_C11:G18_B A 11 ? B 18 ? 19 1 1 A G 12 1_555 B C 17 1_555 0.034 -0.129 0.225 -9.195 -12.111 1.953 12 A_G12:C17_B A 12 ? B 17 ? 19 1 1 A G 13 1_555 B G 16 1_555 -3.906 0.963 -0.149 5.523 -1.014 -48.722 13 A_G13:G16_B A 13 ? B 16 ? ? ? 1 A G 14 1_555 B A 15 1_555 0.187 3.108 -0.747 0.804 -13.968 -58.355 14 A_G14:A15_B A 14 ? B 15 ? ? ? 1 A G 16 1_555 B G 13 1_555 3.929 1.326 -0.194 -7.458 -1.745 -61.437 15 A_G16:G13_B A 16 ? B 13 ? ? ? 1 A C 17 1_555 B G 12 1_555 0.792 -0.441 0.098 2.812 -7.871 -2.627 16 A_C17:G12_B A 17 ? B 12 ? 19 1 1 A G 18 1_555 B C 11 1_555 -0.226 -0.403 -0.123 1.345 -9.998 -1.021 17 A_G18:C11_B A 18 ? B 11 ? 19 1 1 A G 19 1_555 B C 10 1_555 0.056 -0.160 -0.062 -6.345 -9.631 0.697 18 A_G19:C10_B A 19 ? B 10 ? 19 1 1 A G 20 1_555 B C 9 1_555 -0.055 -0.100 0.061 -4.633 -5.785 3.176 19 A_G20:C9_B A 20 ? B 9 ? 19 1 1 A G 21 1_555 B U 8 1_555 -2.302 -0.608 -0.040 -6.302 -7.642 -0.413 20 A_G21:U8_B A 21 ? B 8 ? 28 1 1 A G 22 1_555 B C 7 1_555 -0.573 -0.268 -0.270 -8.066 -10.445 2.513 21 A_G22:C7_B A 22 ? B 7 ? 19 1 1 A A 23 1_555 B C 6 1_555 -2.501 -0.450 0.402 -2.621 -8.940 10.285 22 A_A23:C6_B A 23 ? B 6 ? ? 1 1 A C 24 1_555 B A 5 1_555 2.399 -0.347 0.154 4.387 -8.695 9.467 23 A_C24:A5_B A 24 ? B 5 ? ? 1 1 A C 25 1_555 B G 4 1_555 -0.149 -0.052 0.181 3.908 -6.178 2.927 24 A_C25:G4_B A 25 ? B 4 ? 19 1 1 A A 26 1_555 B U 3 1_555 -0.151 -0.075 -0.143 4.909 -16.084 -0.373 25 A_A26:U3_B A 26 ? B 3 ? 20 1 1 A C 27 1_555 B G 2 1_555 0.098 -0.099 0.150 0.312 -17.065 -0.281 26 A_C27:G2_B A 27 ? B 2 ? 19 1 1 A U 28 1_555 B GDP 1 1_555 2.460 -0.672 -0.028 5.673 -15.487 -1.833 27 A_U28:GDP1_B A 28 ? B 1 ? 28 ? 1 C G 2 1_555 C C 27 6_555 0.265 -0.053 0.273 -18.765 -11.370 0.586 28 C_G2:C27_C C 2 ? C 27 ? 19 1 1 C U 3 1_555 C A 26 6_555 0.029 0.008 0.294 -13.429 -4.480 -6.501 29 C_U3:A26_C C 3 ? C 26 ? 20 1 1 C G 4 1_555 C C 25 6_555 -0.572 -0.124 0.003 -4.836 -17.744 6.649 30 C_G4:C25_C C 4 ? C 25 ? 19 1 1 C A 5 1_555 C C 24 6_555 -1.767 -0.393 -0.010 -4.962 -10.970 4.435 31 C_A5:C24_C C 5 ? C 24 ? ? 1 1 C C 6 1_555 C A 23 6_555 -0.954 -0.025 -0.033 7.038 -15.282 6.516 32 C_C6:A23_C C 6 ? C 23 ? ? 1 1 C C 7 1_555 C G 22 6_555 0.657 -0.159 -0.185 10.134 -13.833 2.738 33 C_C7:G22_C C 7 ? C 22 ? 19 1 1 C U 8 1_555 C G 21 6_555 2.283 -0.674 -0.014 3.889 -14.336 -0.110 34 C_U8:G21_C C 8 ? C 21 ? 28 1 1 C C 9 1_555 C G 20 6_555 0.328 -0.217 -0.129 6.496 -7.792 1.812 35 C_C9:G20_C C 9 ? C 20 ? 19 1 1 C C 10 1_555 C G 19 6_555 0.170 -0.176 -0.036 4.073 -11.609 4.922 36 C_C10:G19_C C 10 ? C 19 ? 19 1 1 C C 11 1_555 C G 18 6_555 -0.047 -0.264 -0.071 -1.596 -5.483 0.472 37 C_C11:G18_C C 11 ? C 18 ? 19 1 1 C G 12 1_555 C C 17 6_555 -0.345 -0.255 0.149 -6.100 -6.121 0.651 38 C_G12:C17_C C 12 ? C 17 ? 19 1 1 C G 13 1_555 C G 16 6_555 -3.929 1.157 -0.019 4.165 -5.810 -59.260 39 C_G13:G16_C C 13 ? C 16 ? ? ? 1 C G 14 1_555 C A 15 6_555 -0.166 2.876 -0.584 -1.133 -10.816 -62.363 40 C_G14:A15_C C 14 ? C 15 ? ? ? 1 C A 15 1_555 C G 14 6_555 0.166 2.876 -0.584 1.133 -10.816 -62.363 41 C_A15:G14_C C 15 ? C 14 ? ? ? 1 C G 16 1_555 C G 13 6_555 3.929 1.157 -0.019 -4.165 -5.810 -59.260 42 C_G16:G13_C C 16 ? C 13 ? ? ? 1 C C 17 1_555 C G 12 6_555 0.345 -0.255 0.149 6.100 -6.121 0.651 43 C_C17:G12_C C 17 ? C 12 ? 19 1 1 C G 18 1_555 C C 11 6_555 0.047 -0.264 -0.071 1.596 -5.483 0.472 44 C_G18:C11_C C 18 ? C 11 ? 19 1 1 C G 19 1_555 C C 10 6_555 -0.170 -0.176 -0.036 -4.073 -11.609 4.922 45 C_G19:C10_C C 19 ? C 10 ? 19 1 1 C G 20 1_555 C C 9 6_555 -0.328 -0.217 -0.129 -6.496 -7.792 1.812 46 C_G20:C9_C C 20 ? C 9 ? 19 1 1 C G 21 1_555 C U 8 6_555 -2.283 -0.674 -0.014 -3.889 -14.336 -0.110 47 C_G21:U8_C C 21 ? C 8 ? 28 1 1 C G 22 1_555 C C 7 6_555 -0.657 -0.159 -0.185 -10.134 -13.833 2.738 48 C_G22:C7_C C 22 ? C 7 ? 19 1 1 C A 23 1_555 C C 6 6_555 0.954 -0.025 -0.033 -7.038 -15.282 6.516 49 C_A23:C6_C C 23 ? C 6 ? ? 1 1 C C 24 1_555 C A 5 6_555 1.767 -0.393 -0.010 4.962 -10.970 4.435 50 C_C24:A5_C C 24 ? C 5 ? ? 1 1 C C 25 1_555 C G 4 6_555 0.572 -0.124 0.003 4.836 -17.744 6.649 51 C_C25:G4_C C 25 ? C 4 ? 19 1 1 C A 26 1_555 C U 3 6_555 -0.029 0.008 0.294 13.429 -4.480 -6.501 52 C_A26:U3_C C 26 ? C 3 ? 20 1 1 C C 27 1_555 C G 2 6_555 -0.265 -0.053 0.273 18.765 -11.370 0.586 53 C_C27:G2_C C 27 ? C 2 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A GDP 1 1_555 B U 28 1_555 A G 2 1_555 B C 27 1_555 -0.231 -1.482 3.154 -3.053 6.671 39.345 -2.880 0.012 2.884 9.804 4.487 39.996 1 AA_GDP1G2:C27U28_BB A 1 ? B 28 ? A 2 ? B 27 ? 1 A G 2 1_555 B C 27 1_555 A U 3 1_555 B A 26 1_555 -0.019 -1.604 3.371 -0.011 3.030 30.828 -3.592 0.033 3.203 5.682 0.020 30.973 2 AA_G2U3:A26C27_BB A 2 ? B 27 ? A 3 ? B 26 ? 1 A U 3 1_555 B A 26 1_555 A G 4 1_555 B C 25 1_555 -0.056 -1.547 3.107 0.625 11.105 29.356 -4.677 0.205 2.377 20.987 -1.182 31.349 3 AA_U3G4:C25A26_BB A 3 ? B 26 ? A 4 ? B 25 ? 1 A G 4 1_555 B C 25 1_555 A A 5 1_555 B C 24 1_555 0.443 -1.796 2.860 -5.913 11.246 21.752 -6.538 -2.287 1.582 27.035 14.215 25.152 4 AA_G4A5:C24C25_BB A 4 ? B 25 ? A 5 ? B 24 ? 1 A A 5 1_555 B C 24 1_555 A C 6 1_555 B A 23 1_555 0.258 -0.894 2.974 -0.903 5.939 34.844 -2.250 -0.543 2.781 9.827 1.495 35.342 5 AA_A5C6:A23C24_BB A 5 ? B 24 ? A 6 ? B 23 ? 1 A C 6 1_555 B A 23 1_555 A C 7 1_555 B G 22 1_555 -0.467 -0.909 3.436 -2.290 10.133 41.970 -2.254 0.404 3.164 13.893 3.139 43.180 6 AA_C6C7:G22A23_BB A 6 ? B 23 ? A 7 ? B 22 ? 1 A C 7 1_555 B G 22 1_555 A U 8 1_555 B G 21 1_555 0.103 -1.493 3.349 2.952 4.255 38.920 -2.731 0.199 3.174 6.352 -4.406 39.249 7 AA_C7U8:G21G22_BB A 7 ? B 22 ? A 8 ? B 21 ? 1 A U 8 1_555 B G 21 1_555 A C 9 1_555 B G 20 1_555 -0.568 -2.321 2.900 1.927 7.085 17.323 -9.871 2.492 1.748 22.267 -6.056 18.804 8 AA_U8C9:G20G21_BB A 8 ? B 21 ? A 9 ? B 20 ? 1 A C 9 1_555 B G 20 1_555 A C 10 1_555 B G 19 1_555 -0.356 -1.618 3.305 -3.185 7.913 31.077 -4.269 0.099 2.839 14.431 5.808 32.199 9 AA_C9C10:G19G20_BB A 9 ? B 20 ? A 10 ? B 19 ? 1 A C 10 1_555 B G 19 1_555 A C 11 1_555 B G 18 1_555 -0.010 -2.002 3.558 1.291 10.401 29.098 -5.749 0.266 2.696 19.905 -2.471 30.890 10 AA_C10C11:G18G19_BB A 10 ? B 19 ? A 11 ? B 18 ? 1 A C 11 1_555 B G 18 1_555 A G 12 1_555 B C 17 1_555 0.353 -1.936 3.206 0.604 13.512 32.281 -5.001 -0.509 2.246 23.079 -1.032 34.930 11 AA_C11G12:C17G18_BB A 11 ? B 18 ? A 12 ? B 17 ? 1 A G 12 1_555 B C 17 1_555 A G 13 1_555 B G 16 1_555 -3.580 -0.887 2.654 -2.631 4.460 19.717 -4.214 9.110 2.834 12.743 7.518 20.379 12 AA_G12G13:G16C17_BB A 12 ? B 17 ? A 13 ? B 16 ? 1 A G 13 1_555 B G 16 1_555 A G 14 1_555 B A 15 1_555 -0.168 -2.096 3.482 -0.656 6.091 47.924 -3.049 0.152 3.210 7.464 0.804 48.291 13 AA_G13G14:A15G16_BB A 13 ? B 16 ? A 14 ? B 15 ? 1 A G 16 1_555 B G 13 1_555 A C 17 1_555 B G 12 1_555 4.315 -0.677 2.936 -0.094 2.522 23.559 -2.389 -10.538 2.832 6.153 0.230 23.692 14 AA_G16C17:G12G13_BB A 16 ? B 13 ? A 17 ? B 12 ? 1 A C 17 1_555 B G 12 1_555 A G 18 1_555 B C 11 1_555 -0.129 -1.854 3.305 0.559 6.414 26.652 -5.412 0.403 2.787 13.662 -1.192 27.405 15 AA_C17G18:C11G12_BB A 17 ? B 12 ? A 18 ? B 11 ? 1 A G 18 1_555 B C 11 1_555 A G 19 1_555 B C 10 1_555 -0.041 -1.940 3.391 -2.441 10.037 33.620 -4.648 -0.280 2.714 16.865 4.102 35.128 16 AA_G18G19:C10C11_BB A 18 ? B 11 ? A 19 ? B 10 ? 1 A G 19 1_555 B C 10 1_555 A G 20 1_555 B C 9 1_555 0.012 -2.055 3.143 0.266 8.056 28.523 -5.512 0.027 2.482 15.953 -0.526 29.617 17 AA_G19G20:C9C10_BB A 19 ? B 10 ? A 20 ? B 9 ? 1 A G 20 1_555 B C 9 1_555 A G 21 1_555 B U 8 1_555 0.887 -2.390 3.174 1.983 7.568 19.960 -9.048 -1.699 2.205 20.830 -5.459 21.424 18 AA_G20G21:U8C9_BB A 20 ? B 9 ? A 21 ? B 8 ? 1 A G 21 1_555 B U 8 1_555 A G 22 1_555 B C 7 1_555 0.171 -1.767 3.370 1.953 7.675 35.926 -3.824 -0.011 2.948 12.260 -3.119 36.760 19 AA_G21G22:C7U8_BB A 21 ? B 8 ? A 22 ? B 7 ? 1 A G 22 1_555 B C 7 1_555 A A 23 1_555 B C 6 1_555 0.465 -1.785 2.932 -5.820 2.378 24.670 -4.636 -2.484 2.575 5.453 13.346 25.446 20 AA_G22A23:C6C7_BB A 22 ? B 7 ? A 23 ? B 6 ? 1 A A 23 1_555 B C 6 1_555 A C 24 1_555 B A 5 1_555 0.207 -0.745 3.162 1.926 2.880 50.566 -1.066 -0.111 3.124 3.367 -2.252 50.676 21 AA_A23C24:A5C6_BB A 23 ? B 6 ? A 24 ? B 5 ? 1 A C 24 1_555 B A 5 1_555 A C 25 1_555 B G 4 1_555 -0.985 -2.014 3.091 1.507 8.821 18.835 -8.596 3.242 1.881 25.193 -4.305 20.836 22 AA_C24C25:G4A5_BB A 24 ? B 5 ? A 25 ? B 4 ? 1 A C 25 1_555 B G 4 1_555 A A 26 1_555 B U 3 1_555 -0.361 -1.245 3.276 2.201 4.513 31.060 -3.116 1.067 3.037 8.359 -4.077 31.453 23 AA_C25A26:U3G4_BB A 25 ? B 4 ? A 26 ? B 3 ? 1 A A 26 1_555 B U 3 1_555 A C 27 1_555 B G 2 1_555 0.199 -1.444 3.304 -1.548 9.490 33.403 -3.801 -0.559 2.790 16.100 2.627 34.722 24 AA_A26C27:G2U3_BB A 26 ? B 3 ? A 27 ? B 2 ? 1 A C 27 1_555 B G 2 1_555 A U 28 1_555 B GDP 1 1_555 0.361 -1.378 3.164 2.880 1.393 40.595 -2.129 -0.212 3.135 2.004 -4.143 40.716 25 AA_C27U28:GDP1G2_BB A 27 ? B 2 ? A 28 ? B 1 ? 1 C G 2 1_555 C C 27 6_555 C U 3 1_555 C A 26 6_555 -1.527 -1.692 3.036 0.329 1.160 35.632 -2.919 2.538 2.968 1.896 -0.538 35.652 26 CC_G2U3:A26C27_CC C 2 ? C 27 ? C 3 ? C 26 ? 1 C U 3 1_555 C A 26 6_555 C G 4 1_555 C C 25 6_555 0.845 -1.241 2.930 2.222 7.044 30.896 -3.386 -1.192 2.643 12.990 -4.098 31.746 27 CC_U3G4:C25A26_CC C 3 ? C 26 ? C 4 ? C 25 ? 1 C G 4 1_555 C C 25 6_555 C A 5 1_555 C C 24 6_555 0.034 -1.431 3.166 -4.282 6.957 22.955 -5.369 -1.297 2.579 16.813 10.347 24.347 28 CC_G4A5:C24C25_CC C 4 ? C 25 ? C 5 ? C 24 ? 1 C A 5 1_555 C C 24 6_555 C C 6 1_555 C A 23 6_555 -0.314 -0.989 2.989 -1.386 5.811 33.318 -2.535 0.341 2.792 10.035 2.393 33.835 29 CC_A5C6:A23C24_CC C 5 ? C 24 ? C 6 ? C 23 ? 1 C C 6 1_555 C A 23 6_555 C C 7 1_555 C G 22 6_555 -0.082 -1.131 3.194 -0.660 5.126 40.724 -2.147 0.049 3.037 7.330 0.944 41.037 30 CC_C6C7:G22A23_CC C 6 ? C 23 ? C 7 ? C 22 ? 1 C C 7 1_555 C G 22 6_555 C U 8 1_555 C G 21 6_555 0.005 -1.640 3.451 0.037 8.383 38.529 -3.429 -0.003 3.042 12.524 -0.056 39.397 31 CC_C7U8:G21G22_CC C 7 ? C 22 ? C 8 ? C 21 ? 1 C U 8 1_555 C G 21 6_555 C C 9 1_555 C G 20 6_555 -0.572 -2.213 2.992 2.697 12.090 21.805 -7.740 1.907 1.494 29.130 -6.499 25.041 32 CC_U8C9:G20G21_CC C 8 ? C 21 ? C 9 ? C 20 ? 1 C C 9 1_555 C G 20 6_555 C C 10 1_555 C G 19 6_555 0.858 -1.757 3.249 0.901 8.850 31.609 -4.519 -1.375 2.695 15.857 -1.615 32.806 33 CC_C9C10:G19G20_CC C 9 ? C 20 ? C 10 ? C 19 ? 1 C C 10 1_555 C G 19 6_555 C C 11 1_555 C G 18 6_555 -0.634 -2.139 3.399 -0.091 7.832 28.859 -5.701 1.211 2.738 15.361 0.178 29.882 34 CC_C10C11:G18G19_CC C 10 ? C 19 ? C 11 ? C 18 ? 1 C C 11 1_555 C G 18 6_555 C G 12 1_555 C C 17 6_555 0.110 -1.721 3.306 -0.700 10.756 28.252 -5.309 -0.342 2.495 21.090 1.372 30.199 35 CC_C11G12:C17G18_CC C 11 ? C 18 ? C 12 ? C 17 ? 1 C G 12 1_555 C C 17 6_555 C G 13 1_555 C G 16 6_555 -4.134 -1.083 2.921 -3.287 2.898 23.859 -3.458 8.843 3.299 6.934 7.866 24.252 36 CC_G12G13:G16C17_CC C 12 ? C 17 ? C 13 ? C 16 ? 1 C G 13 1_555 C G 16 6_555 C G 14 1_555 C A 15 6_555 -0.165 -2.306 3.498 2.067 4.293 46.143 -3.305 0.391 3.272 5.460 -2.629 46.375 37 CC_G13G14:A15G16_CC C 13 ? C 16 ? C 14 ? C 15 ? 1 C G 14 1_555 C A 15 6_555 C A 15 1_555 C G 14 6_555 0.000 -2.481 3.087 0.000 5.849 34.238 -4.946 0.000 2.640 9.846 0.000 34.719 38 CC_G14A15:G14A15_CC C 14 ? C 15 ? C 15 ? C 14 ? 1 C A 15 1_555 C G 14 6_555 C G 16 1_555 C G 13 6_555 0.165 -2.306 3.498 -2.067 4.293 46.143 -3.305 -0.391 3.272 5.460 2.629 46.375 39 CC_A15G16:G13G14_CC C 15 ? C 14 ? C 16 ? C 13 ? 1 C G 16 1_555 C G 13 6_555 C C 17 1_555 C G 12 6_555 4.134 -1.083 2.921 3.287 2.898 23.859 -3.458 -8.843 3.299 6.934 -7.866 24.252 40 CC_G16C17:G12G13_CC C 16 ? C 13 ? C 17 ? C 12 ? 1 C C 17 1_555 C G 12 6_555 C G 18 1_555 C C 11 6_555 -0.110 -1.721 3.306 0.700 10.756 28.252 -5.309 0.342 2.495 21.090 -1.372 30.199 41 CC_C17G18:C11G12_CC C 17 ? C 12 ? C 18 ? C 11 ? 1 C G 18 1_555 C C 11 6_555 C G 19 1_555 C C 10 6_555 0.634 -2.139 3.399 0.091 7.832 28.859 -5.701 -1.211 2.738 15.361 -0.178 29.882 42 CC_G18G19:C10C11_CC C 18 ? C 11 ? C 19 ? C 10 ? 1 C G 19 1_555 C C 10 6_555 C G 20 1_555 C C 9 6_555 -0.858 -1.757 3.249 -0.901 8.850 31.609 -4.519 1.375 2.695 15.857 1.615 32.806 43 CC_G19G20:C9C10_CC C 19 ? C 10 ? C 20 ? C 9 ? 1 C G 20 1_555 C C 9 6_555 C G 21 1_555 C U 8 6_555 0.572 -2.213 2.992 -2.697 12.090 21.805 -7.740 -1.907 1.494 29.130 6.499 25.041 44 CC_G20G21:U8C9_CC C 20 ? C 9 ? C 21 ? C 8 ? 1 C G 21 1_555 C U 8 6_555 C G 22 1_555 C C 7 6_555 -0.005 -1.640 3.451 -0.037 8.383 38.529 -3.429 0.003 3.042 12.524 0.056 39.397 45 CC_G21G22:C7U8_CC C 21 ? C 8 ? C 22 ? C 7 ? 1 C G 22 1_555 C C 7 6_555 C A 23 1_555 C C 6 6_555 0.082 -1.131 3.194 0.660 5.126 40.724 -2.147 -0.049 3.037 7.330 -0.944 41.037 46 CC_G22A23:C6C7_CC C 22 ? C 7 ? C 23 ? C 6 ? 1 C A 23 1_555 C C 6 6_555 C C 24 1_555 C A 5 6_555 0.314 -0.989 2.989 1.386 5.811 33.318 -2.535 -0.341 2.792 10.035 -2.393 33.835 47 CC_A23C24:A5C6_CC C 23 ? C 6 ? C 24 ? C 5 ? 1 C C 24 1_555 C A 5 6_555 C C 25 1_555 C G 4 6_555 -0.034 -1.431 3.166 4.282 6.957 22.955 -5.369 1.297 2.579 16.813 -10.347 24.347 48 CC_C24C25:G4A5_CC C 24 ? C 5 ? C 25 ? C 4 ? 1 C C 25 1_555 C G 4 6_555 C A 26 1_555 C U 3 6_555 -0.845 -1.241 2.930 -2.222 7.044 30.897 -3.386 1.192 2.643 12.990 4.098 31.746 49 CC_C25A26:U3G4_CC C 25 ? C 4 ? C 26 ? C 3 ? 1 C A 26 1_555 C U 3 6_555 C C 27 1_555 C G 2 6_555 1.527 -1.692 3.036 -0.329 1.160 35.632 -2.919 -2.538 2.968 1.896 0.538 35.652 50 CC_A26C27:G2U3_CC C 26 ? C 3 ? C 27 ? C 2 ? # _atom_sites.entry_id 1D4R _atom_sites.fract_transf_matrix[1][1] 0.023267 _atom_sites.fract_transf_matrix[1][2] 0.013433 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026866 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004321 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_