data_1D53 # _entry.id 1D53 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1D53 pdb_00001d53 10.2210/pdb1d53/pdb RCSB ZDH030 ? ? WWPDB D_1000172654 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1993-04-13 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1D53 _pdbx_database_status.recvd_initial_deposition_date 1992-11-05 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kumar, V.D.' 1 'Harrison, R.W.' 2 'Andrews, L.C.' 3 'Weber, I.T.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Crystal structure at 1.5-A resolution of d(CGCICICG), an octanucleotide containing inosine, and its comparison with d(CGCG) and d(CGCGCG) structures. ; Biochemistry 31 1541 1550 1992 BICHAW US 0006-2960 0033 ? 1737011 10.1021/bi00120a035 1 ;The Molecular Structure of the Left-Handed Z-DNA Double Helix at 1.0 Angstrom Atomic Resolution. Geometry, Conformation, and Ionic Interaction of d(CGCGCG) ; J.Biol.Chem. 264 7921 7935 1989 JBCHA3 US 0021-9258 0071 ? ? ? 2 'The Octamers d(CGCGCGCG) and d(CGCATGCG) Both Crystallize as Z-DNA in the Same Hexagonal Lattice' Biopolymers 24 243 250 1985 BIPMAA US 0006-3525 0161 ? ? ? 3 'The Tetramer d(CpGpCpG) Crystallizes as a Left-Handed Double Helix' Proc.Natl.Acad.Sci.USA 77 4016 4020 1980 PNASA6 US 0027-8424 0040 ? ? ? 4 ;High-Salt d(CpGpCpG), a Left-Handed Z'DNA Double Helix ; Nature 286 567 573 1980 NATUAS UK 0028-0836 0006 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kumar, V.D.' 1 ? primary 'Harrison, R.W.' 2 ? primary 'Andrews, L.C.' 3 ? primary 'Weber, I.T.' 4 ? 1 'Gessner, R.V.' 5 ? 1 'Frederick, C.A.' 6 ? 1 'Quigley, G.J.' 7 ? 1 'Rich, A.' 8 ? 1 'Wang, A.H.-J.' 9 ? 2 'Fujii, S.' 10 ? 2 'Wang, A.H.-J.' 11 ? 2 'Quigley, G.J.' 12 ? 2 'Westerink, H.' 13 ? 2 'Van Der Marel, G.' 14 ? 2 'Van Boom, J.H.' 15 ? 2 'Rich, A.' 16 ? 3 'Crawford, J.L.' 17 ? 3 'Kolpak, F.J.' 18 ? 3 'Wang, A.H.-J.' 19 ? 3 'Quigley, G.J.' 20 ? 3 'Van Boom, J.H.' 21 ? 3 'Van Der Marel, G.' 22 ? 3 'Rich, A.' 23 ? 4 'Drew, H.' 24 ? 4 'Takano, T.' 25 ? 4 'Tanaka, S.' 26 ? 4 'Itakura, K.' 27 ? 4 'Dickerson, R.' 28 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*CP*IP*CP*IP*CP*G)-3') ; 573.430 2 ? ? ? ? 2 polymer syn ;DNA (5'-D(*CP*GP*CP*G)-3') ; 1191.818 2 ? ? ? ? 3 water nat water 18.015 69 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DG)' CG A,B ? 2 polydeoxyribonucleotide no no '(DC)(DG)(DC)(DG)' CGCG C,D ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 2 1 DC n 2 2 DG n 2 3 DC n 2 4 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n B 1 1 DC 1 3 3 DC C B . n B 1 2 DG 2 4 4 DG G B . n C 2 1 DC 1 5 5 DC C C . n C 2 2 DG 2 6 6 DG G C . n C 2 3 DC 3 7 7 DC C C . n C 2 4 DG 4 8 8 DG G C . n D 2 1 DC 1 9 9 DC C D . n D 2 2 DG 2 10 10 DG G D . n D 2 3 DC 3 11 11 DC C D . n D 2 4 DG 4 12 12 DG G D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HOH 1 27 27 HOH HOH A . E 3 HOH 2 51 51 HOH HOH A . E 3 HOH 3 61 61 HOH HOH A . E 3 HOH 4 67 67 HOH HOH A . E 3 HOH 5 70 70 HOH HOH A . E 3 HOH 6 75 75 HOH HOH A . F 3 HOH 1 15 15 HOH HOH B . F 3 HOH 2 17 17 HOH HOH B . F 3 HOH 3 19 19 HOH HOH B . F 3 HOH 4 28 28 HOH HOH B . F 3 HOH 5 29 29 HOH HOH B . F 3 HOH 6 34 34 HOH HOH B . F 3 HOH 7 42 42 HOH HOH B . F 3 HOH 8 44 44 HOH HOH B . F 3 HOH 9 46 46 HOH HOH B . F 3 HOH 10 47 47 HOH HOH B . F 3 HOH 11 48 48 HOH HOH B . F 3 HOH 12 52 52 HOH HOH B . F 3 HOH 13 55 55 HOH HOH B . F 3 HOH 14 59 59 HOH HOH B . F 3 HOH 15 60 60 HOH HOH B . F 3 HOH 16 63 63 HOH HOH B . F 3 HOH 17 64 64 HOH HOH B . F 3 HOH 18 72 72 HOH HOH B . F 3 HOH 19 76 76 HOH HOH B . G 3 HOH 1 20 20 HOH HOH C . G 3 HOH 2 22 22 HOH HOH C . G 3 HOH 3 23 23 HOH HOH C . G 3 HOH 4 31 31 HOH HOH C . G 3 HOH 5 32 32 HOH HOH C . G 3 HOH 6 39 39 HOH HOH C . G 3 HOH 7 41 41 HOH HOH C . G 3 HOH 8 45 45 HOH HOH C . G 3 HOH 9 49 49 HOH HOH C . G 3 HOH 10 53 53 HOH HOH C . G 3 HOH 11 56 56 HOH HOH C . G 3 HOH 12 66 66 HOH HOH C . G 3 HOH 13 68 68 HOH HOH C . G 3 HOH 14 73 73 HOH HOH C . G 3 HOH 15 78 78 HOH HOH C . H 3 HOH 1 13 13 HOH HOH D . H 3 HOH 2 14 14 HOH HOH D . H 3 HOH 3 16 16 HOH HOH D . H 3 HOH 4 18 18 HOH HOH D . H 3 HOH 5 21 21 HOH HOH D . H 3 HOH 6 24 24 HOH HOH D . H 3 HOH 7 25 25 HOH HOH D . H 3 HOH 8 26 26 HOH HOH D . H 3 HOH 9 30 30 HOH HOH D . H 3 HOH 10 33 33 HOH HOH D . H 3 HOH 11 35 35 HOH HOH D . H 3 HOH 12 36 36 HOH HOH D . H 3 HOH 13 37 37 HOH HOH D . H 3 HOH 14 38 38 HOH HOH D . H 3 HOH 15 40 40 HOH HOH D . H 3 HOH 16 43 43 HOH HOH D . H 3 HOH 17 50 50 HOH HOH D . H 3 HOH 18 54 54 HOH HOH D . H 3 HOH 19 57 57 HOH HOH D . H 3 HOH 20 58 58 HOH HOH D . H 3 HOH 21 62 62 HOH HOH D . H 3 HOH 22 65 65 HOH HOH D . H 3 HOH 23 69 69 HOH HOH D . H 3 HOH 24 71 71 HOH HOH D . H 3 HOH 25 74 74 HOH HOH D . H 3 HOH 26 77 77 HOH HOH D . H 3 HOH 27 79 79 HOH HOH D . H 3 HOH 28 80 80 HOH HOH D . H 3 HOH 29 81 81 HOH HOH D . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR refinement . ? 1 NUCLSQ refinement . ? 2 # _cell.entry_id 1D53 _cell.length_a 31.000 _cell.length_b 31.000 _cell.length_c 43.700 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D53 _symmetry.space_group_name_H-M 'P 65' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 # _exptl.entry_id 1D53 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 28.36 _exptl_crystal.density_Matthews 1.72 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details 'ROOM TEMPERATURE' _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 SPERMINE ? ? ? 1 4 1 'MG ACETATE' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type SIEMENS _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1D53 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 10.000 _reflns.d_resolution_high 1.500 _reflns.number_obs 1971 _reflns.number_all 9882 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1D53 _refine.ls_number_reflns_obs 2503 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 3.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 5.000 _refine.ls_d_res_high 1.500 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.2250000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2250000 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 234 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 69 _refine_hist.number_atoms_total 303 _refine_hist.d_res_high 1.500 _refine_hist.d_res_low 5.000 # _database_PDB_matrix.entry_id 1D53 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1D53 _struct.title ;CRYSTAL STRUCTURE AT 1.5 ANGSTROMS RESOLUTION OF D(CGCICICG), AN OCTANUCLEOTIDE CONTAINING INOSINE, AND ITS COMPARISON WITH D(CGCG) AND D(CGCGCG) STRUCTURES ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1D53 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Z-DNA, DOUBLE HELIX, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 1D53 1D53 ? ? ? 2 2 PDB 1D53 1D53 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1D53 A 1 ? 2 ? 1D53 1 ? 2 ? 1 2 2 1 1D53 B 1 ? 2 ? 1D53 3 ? 4 ? 3 4 3 2 1D53 C 1 ? 4 ? 1D53 5 ? 8 ? 5 8 4 2 1D53 D 1 ? 4 ? 1D53 9 ? 12 ? 9 12 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? octameric 8 2 author_defined_assembly ? tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2,3,4 A,B,E,F 2 1,5 C,D,G,H # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_554 x-y,x,z-1/6 0.5000000000 -0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 -7.2833333333 3 'crystal symmetry operation' 3_555 -x+y,-x,z+1/3 -0.5000000000 0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 14.5666666667 4 'crystal symmetry operation' 5_555 y,-x+y,z+1/6 0.5000000000 0.8660254038 0.0000000000 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 7.2833333333 5 'crystal symmetry operation' 2_654 -y+1,x-y,z-1/3 -0.5000000000 -0.8660254038 0.0000000000 31.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 -14.5666666667 # loop_ _struct_biol.id _struct_biol.pdbx_parent_biol_id _struct_biol.details 1 ? ? 2 ? ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 1 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 1 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 1 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 2 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 2 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 2 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? C DC 1 N3 ? ? ? 1_555 D DG 4 N1 ? ? C DC 5 D DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? C DC 1 N4 ? ? ? 1_555 D DG 4 O6 ? ? C DC 5 D DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? C DC 1 O2 ? ? ? 1_555 D DG 4 N2 ? ? C DC 5 D DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? C DG 2 N1 ? ? ? 1_555 D DC 3 N3 ? ? C DG 6 D DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? C DG 2 N2 ? ? ? 1_555 D DC 3 O2 ? ? C DG 6 D DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? C DG 2 O6 ? ? ? 1_555 D DC 3 N4 ? ? C DG 6 D DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? C DC 3 N3 ? ? ? 1_555 D DG 2 N1 ? ? C DC 7 D DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? C DC 3 N4 ? ? ? 1_555 D DG 2 O6 ? ? C DC 7 D DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? C DC 3 O2 ? ? ? 1_555 D DG 2 N2 ? ? C DC 7 D DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? C DG 4 N1 ? ? ? 1_555 D DC 1 N3 ? ? C DG 8 D DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? C DG 4 N2 ? ? ? 1_555 D DC 1 O2 ? ? C DG 8 D DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C DG 4 O6 ? ? ? 1_555 D DC 1 N4 ? ? C DG 8 D DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 C4 B DC 3 ? ? O B HOH 44 ? ? 1.67 2 1 "O5'" D DG 10 ? ? O D HOH 16 ? ? 1.73 3 1 OP2 C DG 8 ? ? O C HOH 32 ? ? 1.83 4 1 C5 B DC 3 ? ? O B HOH 44 ? ? 1.87 5 1 "O5'" C DC 7 ? ? O C HOH 45 ? ? 1.90 6 1 O B HOH 17 ? ? O B HOH 29 ? ? 1.90 7 1 O B HOH 72 ? ? O D HOH 71 ? ? 1.90 8 1 "O3'" B DC 3 ? ? O B HOH 59 ? ? 1.98 9 1 "C1'" B DG 4 ? ? O B HOH 42 ? ? 2.01 10 1 "O5'" D DG 12 ? ? O D HOH 69 ? ? 2.01 11 1 N2 D DG 12 ? ? O D HOH 18 ? ? 2.04 12 1 N3 D DG 12 ? ? O D HOH 18 ? ? 2.10 13 1 OP2 B DG 4 ? ? O B HOH 47 ? ? 2.13 14 1 "O5'" D DC 11 ? ? O D HOH 54 ? ? 2.13 15 1 O B HOH 15 ? ? O D HOH 71 ? ? 2.14 16 1 OP2 B DG 4 ? ? O B HOH 48 ? ? 2.14 17 1 O D HOH 33 ? ? O D HOH 36 ? ? 2.16 18 1 "O5'" B DG 4 ? ? O B HOH 47 ? ? 2.16 19 1 "C4'" D DC 9 ? ? O D HOH 16 ? ? 2.17 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 "O5'" D DC 9 ? ? 1_555 O D HOH 77 ? ? 3_665 0.95 2 1 "C5'" D DC 9 ? ? 1_555 O D HOH 77 ? ? 3_665 1.08 3 1 "O3'" C DG 8 ? ? 1_555 O C HOH 66 ? ? 3_665 1.72 4 1 O A HOH 61 ? ? 1_555 O D HOH 40 ? ? 5_455 1.87 5 1 O C HOH 39 ? ? 1_555 O D HOH 50 ? ? 6_654 1.91 6 1 O A HOH 27 ? ? 1_555 O D HOH 79 ? ? 5_455 1.95 7 1 O A HOH 75 ? ? 1_555 O B HOH 64 ? ? 2_554 1.96 8 1 O D HOH 62 ? ? 1_555 O D HOH 81 ? ? 5_555 2.00 9 1 O A HOH 67 ? ? 1_555 O B HOH 76 ? ? 2_554 2.13 10 1 O D HOH 13 ? ? 1_555 O D HOH 58 ? ? 3_665 2.15 11 1 O B HOH 76 ? ? 1_555 O C HOH 53 ? ? 1_455 2.16 12 1 N7 D DG 12 ? ? 1_555 O D HOH 57 ? ? 2_654 2.18 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 N1 A DC 1 ? ? C6 A DC 1 ? ? 1.325 1.367 -0.042 0.006 N 2 1 P A DG 2 ? ? OP2 A DG 2 ? ? 1.357 1.485 -0.128 0.017 N 3 1 "O4'" A DG 2 ? ? "C4'" A DG 2 ? ? 1.379 1.446 -0.067 0.010 N 4 1 N3 B DC 3 ? ? C4 B DC 3 ? ? 1.385 1.335 0.050 0.007 N 5 1 P B DG 4 ? ? OP1 B DG 4 ? ? 1.682 1.485 0.197 0.017 N 6 1 P B DG 4 ? ? "O5'" B DG 4 ? ? 1.735 1.593 0.142 0.010 N 7 1 "O3'" B DG 4 ? ? "C3'" B DG 4 ? ? 1.374 1.419 -0.045 0.006 N 8 1 N3 C DC 5 ? ? C4 C DC 5 ? ? 1.391 1.335 0.056 0.007 N 9 1 P C DG 6 ? ? "O5'" C DG 6 ? ? 1.467 1.593 -0.126 0.010 N 10 1 N1 C DG 6 ? ? C2 C DG 6 ? ? 1.313 1.373 -0.060 0.008 N 11 1 C4 C DG 6 ? ? C5 C DG 6 ? ? 1.334 1.379 -0.045 0.007 N 12 1 N7 C DG 6 ? ? C8 C DG 6 ? ? 1.262 1.305 -0.043 0.006 N 13 1 "O3'" C DC 7 ? ? P C DG 8 ? ? 1.517 1.607 -0.090 0.012 Y 14 1 P C DG 8 ? ? OP1 C DG 8 ? ? 1.588 1.485 0.103 0.017 N 15 1 N1 C DG 8 ? ? C2 C DG 8 ? ? 1.319 1.373 -0.054 0.008 N 16 1 C2 C DG 8 ? ? N3 C DG 8 ? ? 1.413 1.323 0.090 0.008 N 17 1 C8 C DG 8 ? ? N9 C DG 8 ? ? 1.332 1.374 -0.042 0.007 N 18 1 "O4'" D DC 9 ? ? "C4'" D DC 9 ? ? 1.386 1.446 -0.060 0.010 N 19 1 "C2'" D DG 10 ? ? "C1'" D DG 10 ? ? 1.447 1.518 -0.071 0.010 N 20 1 C8 D DG 10 ? ? N9 D DG 10 ? ? 1.319 1.374 -0.055 0.007 N 21 1 "O3'" D DG 10 ? ? P D DC 11 ? ? 1.706 1.607 0.099 0.012 Y 22 1 P D DC 11 ? ? OP1 D DC 11 ? ? 1.364 1.485 -0.121 0.017 N 23 1 P D DC 11 ? ? "O5'" D DC 11 ? ? 1.763 1.593 0.170 0.010 N 24 1 C4 D DC 11 ? ? C5 D DC 11 ? ? 1.366 1.425 -0.059 0.008 N 25 1 "O4'" D DG 12 ? ? "C1'" D DG 12 ? ? 1.489 1.420 0.069 0.011 N 26 1 C8 D DG 12 ? ? N9 D DG 12 ? ? 1.292 1.374 -0.082 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A DC 1 ? ? "C5'" A DC 1 ? ? "C4'" A DC 1 ? ? 101.08 109.40 -8.32 0.80 N 2 1 "O4'" A DC 1 ? ? "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? 109.84 106.00 3.84 0.60 N 3 1 "C1'" A DC 1 ? ? "O4'" A DC 1 ? ? "C4'" A DC 1 ? ? 98.50 110.10 -11.60 1.00 N 4 1 "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? "C1'" A DC 1 ? ? 89.15 102.40 -13.25 0.80 N 5 1 C6 A DC 1 ? ? N1 A DC 1 ? ? C2 A DC 1 ? ? 125.50 120.30 5.20 0.40 N 6 1 N1 A DC 1 ? ? C2 A DC 1 ? ? N3 A DC 1 ? ? 110.88 119.20 -8.32 0.70 N 7 1 C2 A DC 1 ? ? N3 A DC 1 ? ? C4 A DC 1 ? ? 125.66 119.90 5.76 0.50 N 8 1 C4 A DC 1 ? ? C5 A DC 1 ? ? C6 A DC 1 ? ? 113.39 117.40 -4.01 0.50 N 9 1 C5 A DC 1 ? ? C6 A DC 1 ? ? N1 A DC 1 ? ? 124.11 121.00 3.11 0.50 N 10 1 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 126.64 118.90 7.74 0.60 N 11 1 "C3'" A DC 1 ? ? "O3'" A DC 1 ? ? P A DG 2 ? ? 103.72 119.70 -15.98 1.20 Y 12 1 "O5'" A DG 2 ? ? P A DG 2 ? ? OP1 A DG 2 ? ? 83.97 105.70 -21.73 0.90 N 13 1 "O5'" A DG 2 ? ? P A DG 2 ? ? OP2 A DG 2 ? ? 137.67 110.70 26.97 1.20 N 14 1 P A DG 2 ? ? "O5'" A DG 2 ? ? "C5'" A DG 2 ? ? 108.85 120.90 -12.05 1.60 N 15 1 "O4'" A DG 2 ? ? "C4'" A DG 2 ? ? "C3'" A DG 2 ? ? 95.64 104.50 -8.86 0.40 N 16 1 N7 A DG 2 ? ? C8 A DG 2 ? ? N9 A DG 2 ? ? 116.43 113.10 3.33 0.50 N 17 1 C2 B DC 3 ? ? N3 B DC 3 ? ? C4 B DC 3 ? ? 115.08 119.90 -4.82 0.50 N 18 1 "C3'" B DC 3 ? ? "O3'" B DC 3 ? ? P B DG 4 ? ? 152.28 119.70 32.58 1.20 Y 19 1 "O3'" B DC 3 ? ? P B DG 4 ? ? OP2 B DG 4 ? ? 126.30 110.50 15.80 1.10 Y 20 1 OP1 B DG 4 ? ? P B DG 4 ? ? OP2 B DG 4 ? ? 105.18 119.60 -14.42 1.50 N 21 1 "O5'" B DG 4 ? ? P B DG 4 ? ? OP1 B DG 4 ? ? 94.52 105.70 -11.18 0.90 N 22 1 "O4'" B DG 4 ? ? "C4'" B DG 4 ? ? "C3'" B DG 4 ? ? 101.43 104.50 -3.07 0.40 N 23 1 C6 B DG 4 ? ? N1 B DG 4 ? ? C2 B DG 4 ? ? 120.67 125.10 -4.43 0.60 N 24 1 C2 B DG 4 ? ? N3 B DG 4 ? ? C4 B DG 4 ? ? 116.46 111.90 4.56 0.50 N 25 1 N3 B DG 4 ? ? C4 B DG 4 ? ? C5 B DG 4 ? ? 125.20 128.60 -3.40 0.50 N 26 1 C5 B DG 4 ? ? C6 B DG 4 ? ? N1 B DG 4 ? ? 116.36 111.50 4.86 0.50 N 27 1 N3 B DG 4 ? ? C4 B DG 4 ? ? N9 B DG 4 ? ? 130.68 126.00 4.68 0.60 N 28 1 N3 B DG 4 ? ? C2 B DG 4 ? ? N2 B DG 4 ? ? 124.22 119.90 4.32 0.70 N 29 1 C5 B DG 4 ? ? C6 B DG 4 ? ? O6 B DG 4 ? ? 120.72 128.60 -7.88 0.60 N 30 1 C4 B DG 4 ? ? N9 B DG 4 ? ? "C1'" B DG 4 ? ? 118.62 126.50 -7.88 1.30 N 31 1 "C4'" C DC 5 ? ? "C3'" C DC 5 ? ? "C2'" C DC 5 ? ? 94.40 102.20 -7.80 0.70 N 32 1 "O4'" C DC 5 ? ? "C1'" C DC 5 ? ? N1 C DC 5 ? ? 113.58 108.30 5.28 0.30 N 33 1 C6 C DC 5 ? ? N1 C DC 5 ? ? C2 C DC 5 ? ? 116.91 120.30 -3.39 0.40 N 34 1 C2 C DC 5 ? ? N3 C DC 5 ? ? C4 C DC 5 ? ? 123.97 119.90 4.07 0.50 N 35 1 N3 C DC 5 ? ? C4 C DC 5 ? ? C5 C DC 5 ? ? 114.37 121.90 -7.53 0.40 N 36 1 C4 C DC 5 ? ? C5 C DC 5 ? ? C6 C DC 5 ? ? 122.64 117.40 5.24 0.50 N 37 1 N1 C DC 5 ? ? C2 C DC 5 ? ? O2 C DC 5 ? ? 115.03 118.90 -3.87 0.60 N 38 1 N3 C DC 5 ? ? C2 C DC 5 ? ? O2 C DC 5 ? ? 126.64 121.90 4.74 0.70 N 39 1 C5 C DC 5 ? ? C4 C DC 5 ? ? N4 C DC 5 ? ? 127.39 120.20 7.19 0.70 N 40 1 C6 C DC 5 ? ? N1 C DC 5 ? ? "C1'" C DC 5 ? ? 132.53 120.80 11.73 1.20 N 41 1 C2 C DC 5 ? ? N1 C DC 5 ? ? "C1'" C DC 5 ? ? 110.31 118.80 -8.49 1.10 N 42 1 "C3'" C DC 5 ? ? "O3'" C DC 5 ? ? P C DG 6 ? ? 133.52 119.70 13.82 1.20 Y 43 1 "O3'" C DC 5 ? ? P C DG 6 ? ? "O5'" C DG 6 ? ? 118.56 104.00 14.56 1.90 Y 44 1 OP1 C DG 6 ? ? P C DG 6 ? ? OP2 C DG 6 ? ? 108.47 119.60 -11.13 1.50 N 45 1 "O5'" C DG 6 ? ? P C DG 6 ? ? OP1 C DG 6 ? ? 94.76 105.70 -10.94 0.90 N 46 1 "O5'" C DG 6 ? ? P C DG 6 ? ? OP2 C DG 6 ? ? 126.81 110.70 16.11 1.20 N 47 1 "O5'" C DG 6 ? ? "C5'" C DG 6 ? ? "C4'" C DG 6 ? ? 127.89 111.00 16.89 2.50 N 48 1 "C1'" C DG 6 ? ? "O4'" C DG 6 ? ? "C4'" C DG 6 ? ? 116.06 110.30 5.76 0.70 N 49 1 N3 C DG 6 ? ? C4 C DG 6 ? ? C5 C DG 6 ? ? 124.52 128.60 -4.08 0.50 N 50 1 C4 C DG 6 ? ? C5 C DG 6 ? ? N7 C DG 6 ? ? 105.86 110.80 -4.94 0.40 N 51 1 C5 C DG 6 ? ? N7 C DG 6 ? ? C8 C DG 6 ? ? 107.30 104.30 3.00 0.50 N 52 1 C8 C DG 6 ? ? N9 C DG 6 ? ? C4 C DG 6 ? ? 101.72 106.40 -4.68 0.40 N 53 1 N9 C DG 6 ? ? C4 C DG 6 ? ? C5 C DG 6 ? ? 108.74 105.40 3.34 0.40 N 54 1 N1 C DG 6 ? ? C2 C DG 6 ? ? N2 C DG 6 ? ? 124.08 116.20 7.88 0.90 N 55 1 N3 C DG 6 ? ? C2 C DG 6 ? ? N2 C DG 6 ? ? 108.52 119.90 -11.38 0.70 N 56 1 C8 C DG 6 ? ? N9 C DG 6 ? ? "C1'" C DG 6 ? ? 136.61 127.00 9.61 1.30 N 57 1 "C3'" C DG 6 ? ? "O3'" C DG 6 ? ? P C DC 7 ? ? 127.93 119.70 8.23 1.20 Y 58 1 "O3'" C DG 6 ? ? P C DC 7 ? ? "O5'" C DC 7 ? ? 115.75 104.00 11.75 1.90 Y 59 1 "O3'" C DG 6 ? ? P C DC 7 ? ? OP2 C DC 7 ? ? 83.13 105.20 -22.07 2.20 Y 60 1 "O5'" C DC 7 ? ? P C DC 7 ? ? OP1 C DC 7 ? ? 122.11 110.70 11.41 1.20 N 61 1 "O5'" C DC 7 ? ? "C5'" C DC 7 ? ? "C4'" C DC 7 ? ? 127.37 111.00 16.37 2.50 N 62 1 P C DC 7 ? ? "O5'" C DC 7 ? ? "C5'" C DC 7 ? ? 103.60 120.90 -17.30 1.60 N 63 1 "C1'" C DC 7 ? ? "O4'" C DC 7 ? ? "C4'" C DC 7 ? ? 117.23 110.30 6.93 0.70 N 64 1 "C4'" C DC 7 ? ? "C3'" C DC 7 ? ? "C2'" C DC 7 ? ? 97.14 102.20 -5.06 0.70 N 65 1 "O4'" C DC 7 ? ? "C1'" C DC 7 ? ? "C2'" C DC 7 ? ? 96.83 105.90 -9.07 0.80 N 66 1 "O4'" C DC 7 ? ? "C1'" C DC 7 ? ? N1 C DC 7 ? ? 120.47 108.30 12.17 0.30 N 67 1 N1 C DC 7 ? ? C2 C DC 7 ? ? N3 C DC 7 ? ? 113.22 119.20 -5.98 0.70 N 68 1 C2 C DC 7 ? ? N3 C DC 7 ? ? C4 C DC 7 ? ? 123.52 119.90 3.62 0.50 N 69 1 N3 C DC 7 ? ? C4 C DC 7 ? ? C5 C DC 7 ? ? 124.78 121.90 2.88 0.40 N 70 1 C4 C DC 7 ? ? C5 C DC 7 ? ? C6 C DC 7 ? ? 109.51 117.40 -7.89 0.50 N 71 1 C5 C DC 7 ? ? C6 C DC 7 ? ? N1 C DC 7 ? ? 126.31 121.00 5.31 0.50 N 72 1 N3 C DC 7 ? ? C2 C DC 7 ? ? O2 C DC 7 ? ? 128.37 121.90 6.47 0.70 N 73 1 N3 C DC 7 ? ? C4 C DC 7 ? ? N4 C DC 7 ? ? 113.47 118.00 -4.53 0.70 N 74 1 "C3'" C DC 7 ? ? "O3'" C DC 7 ? ? P C DG 8 ? ? 138.27 119.70 18.57 1.20 Y 75 1 "O3'" C DC 7 ? ? P C DG 8 ? ? "O5'" C DG 8 ? ? 130.27 104.00 26.27 1.90 Y 76 1 OP1 C DG 8 ? ? P C DG 8 ? ? OP2 C DG 8 ? ? 105.96 119.60 -13.64 1.50 N 77 1 "O5'" C DG 8 ? ? P C DG 8 ? ? OP1 C DG 8 ? ? 85.31 105.70 -20.39 0.90 N 78 1 "O5'" C DG 8 ? ? "C5'" C DG 8 ? ? "C4'" C DG 8 ? ? 128.20 111.00 17.20 2.50 N 79 1 "C5'" C DG 8 ? ? "C4'" C DG 8 ? ? "C3'" C DG 8 ? ? 123.02 115.70 7.32 1.20 N 80 1 "O4'" C DG 8 ? ? "C1'" C DG 8 ? ? N9 C DG 8 ? ? 102.04 108.00 -5.96 0.70 N 81 1 N3 C DG 8 ? ? C4 C DG 8 ? ? C5 C DG 8 ? ? 124.31 128.60 -4.29 0.50 N 82 1 N1 C DG 8 ? ? C2 C DG 8 ? ? N2 C DG 8 ? ? 124.64 116.20 8.44 0.90 N 83 1 N3 C DG 8 ? ? C2 C DG 8 ? ? N2 C DG 8 ? ? 111.63 119.90 -8.27 0.70 N 84 1 C5 C DG 8 ? ? C6 C DG 8 ? ? O6 C DG 8 ? ? 124.10 128.60 -4.50 0.60 N 85 1 "O4'" D DC 9 ? ? "C1'" D DC 9 ? ? "C2'" D DC 9 ? ? 97.39 105.90 -8.51 0.80 N 86 1 N3 D DC 9 ? ? C4 D DC 9 ? ? C5 D DC 9 ? ? 118.18 121.90 -3.72 0.40 N 87 1 C4 D DC 9 ? ? C5 D DC 9 ? ? C6 D DC 9 ? ? 126.61 117.40 9.21 0.50 N 88 1 C5 D DC 9 ? ? C6 D DC 9 ? ? N1 D DC 9 ? ? 114.57 121.00 -6.43 0.50 N 89 1 N1 D DC 9 ? ? C2 D DC 9 ? ? O2 D DC 9 ? ? 127.55 118.90 8.65 0.60 N 90 1 N3 D DC 9 ? ? C2 D DC 9 ? ? O2 D DC 9 ? ? 109.49 121.90 -12.41 0.70 N 91 1 C5 D DC 9 ? ? C4 D DC 9 ? ? N4 D DC 9 ? ? 125.52 120.20 5.32 0.70 N 92 1 "O5'" D DG 10 ? ? P D DG 10 ? ? OP2 D DG 10 ? ? 118.54 110.70 7.84 1.20 N 93 1 "O4'" D DG 10 ? ? "C1'" D DG 10 ? ? N9 D DG 10 ? ? 103.59 108.00 -4.41 0.70 N 94 1 C5 D DG 10 ? ? N7 D DG 10 ? ? C8 D DG 10 ? ? 98.50 104.30 -5.80 0.50 N 95 1 N7 D DG 10 ? ? C8 D DG 10 ? ? N9 D DG 10 ? ? 121.35 113.10 8.25 0.50 N 96 1 C8 D DG 10 ? ? N9 D DG 10 ? ? C4 D DG 10 ? ? 102.31 106.40 -4.09 0.40 N 97 1 N1 D DG 10 ? ? C2 D DG 10 ? ? N2 D DG 10 ? ? 122.64 116.20 6.44 0.90 N 98 1 N3 D DG 10 ? ? C2 D DG 10 ? ? N2 D DG 10 ? ? 113.81 119.90 -6.09 0.70 N 99 1 C8 D DG 10 ? ? N9 D DG 10 ? ? "C1'" D DG 10 ? ? 136.08 127.00 9.08 1.30 N 100 1 "C3'" D DG 10 ? ? "O3'" D DG 10 ? ? P D DC 11 ? ? 109.85 119.70 -9.85 1.20 Y 101 1 OP1 D DC 11 ? ? P D DC 11 ? ? OP2 D DC 11 ? ? 135.59 119.60 15.99 1.50 N 102 1 "O5'" D DC 11 ? ? P D DC 11 ? ? OP1 D DC 11 ? ? 99.35 105.70 -6.35 0.90 N 103 1 P D DC 11 ? ? "O5'" D DC 11 ? ? "C5'" D DC 11 ? ? 103.86 120.90 -17.04 1.60 N 104 1 "C1'" D DC 11 ? ? "O4'" D DC 11 ? ? "C4'" D DC 11 ? ? 115.21 110.30 4.91 0.70 N 105 1 "O4'" D DC 11 ? ? "C1'" D DC 11 ? ? "C2'" D DC 11 ? ? 97.90 105.90 -8.00 0.80 N 106 1 "O4'" D DC 11 ? ? "C1'" D DC 11 ? ? N1 D DC 11 ? ? 115.72 108.30 7.42 0.30 N 107 1 N1 D DC 11 ? ? C2 D DC 11 ? ? O2 D DC 11 ? ? 129.59 118.90 10.69 0.60 N 108 1 N3 D DC 11 ? ? C2 D DC 11 ? ? O2 D DC 11 ? ? 113.21 121.90 -8.69 0.70 N 109 1 "C3'" D DC 11 ? ? "O3'" D DC 11 ? ? P D DG 12 ? ? 135.89 119.70 16.19 1.20 Y 110 1 "O5'" D DG 12 ? ? P D DG 12 ? ? OP2 D DG 12 ? ? 130.52 110.70 19.82 1.20 N 111 1 "O4'" D DG 12 ? ? "C1'" D DG 12 ? ? N9 D DG 12 ? ? 101.42 108.00 -6.58 0.70 N 112 1 C6 D DG 12 ? ? N1 D DG 12 ? ? C2 D DG 12 ? ? 120.55 125.10 -4.55 0.60 N 113 1 C5 D DG 12 ? ? C6 D DG 12 ? ? N1 D DG 12 ? ? 116.21 111.50 4.71 0.50 N 114 1 N9 D DG 12 ? ? C4 D DG 12 ? ? C5 D DG 12 ? ? 102.72 105.40 -2.68 0.40 N 115 1 C8 D DG 12 ? ? N9 D DG 12 ? ? "C1'" D DG 12 ? ? 136.26 127.00 9.26 1.30 N 116 1 C4 D DG 12 ? ? N9 D DG 12 ? ? "C1'" D DG 12 ? ? 116.35 126.50 -10.15 1.30 N # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DC OP3 O N N 1 DC P P N N 2 DC OP1 O N N 3 DC OP2 O N N 4 DC "O5'" O N N 5 DC "C5'" C N N 6 DC "C4'" C N R 7 DC "O4'" O N N 8 DC "C3'" C N S 9 DC "O3'" O N N 10 DC "C2'" C N N 11 DC "C1'" C N R 12 DC N1 N N N 13 DC C2 C N N 14 DC O2 O N N 15 DC N3 N N N 16 DC C4 C N N 17 DC N4 N N N 18 DC C5 C N N 19 DC C6 C N N 20 DC HOP3 H N N 21 DC HOP2 H N N 22 DC "H5'" H N N 23 DC "H5''" H N N 24 DC "H4'" H N N 25 DC "H3'" H N N 26 DC "HO3'" H N N 27 DC "H2'" H N N 28 DC "H2''" H N N 29 DC "H1'" H N N 30 DC H41 H N N 31 DC H42 H N N 32 DC H5 H N N 33 DC H6 H N N 34 DG OP3 O N N 35 DG P P N N 36 DG OP1 O N N 37 DG OP2 O N N 38 DG "O5'" O N N 39 DG "C5'" C N N 40 DG "C4'" C N R 41 DG "O4'" O N N 42 DG "C3'" C N S 43 DG "O3'" O N N 44 DG "C2'" C N N 45 DG "C1'" C N R 46 DG N9 N Y N 47 DG C8 C Y N 48 DG N7 N Y N 49 DG C5 C Y N 50 DG C6 C N N 51 DG O6 O N N 52 DG N1 N N N 53 DG C2 C N N 54 DG N2 N N N 55 DG N3 N N N 56 DG C4 C Y N 57 DG HOP3 H N N 58 DG HOP2 H N N 59 DG "H5'" H N N 60 DG "H5''" H N N 61 DG "H4'" H N N 62 DG "H3'" H N N 63 DG "HO3'" H N N 64 DG "H2'" H N N 65 DG "H2''" H N N 66 DG "H1'" H N N 67 DG H8 H N N 68 DG H1 H N N 69 DG H21 H N N 70 DG H22 H N N 71 HOH O O N N 72 HOH H1 H N N 73 HOH H2 H N N 74 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DC OP3 P sing N N 1 DC OP3 HOP3 sing N N 2 DC P OP1 doub N N 3 DC P OP2 sing N N 4 DC P "O5'" sing N N 5 DC OP2 HOP2 sing N N 6 DC "O5'" "C5'" sing N N 7 DC "C5'" "C4'" sing N N 8 DC "C5'" "H5'" sing N N 9 DC "C5'" "H5''" sing N N 10 DC "C4'" "O4'" sing N N 11 DC "C4'" "C3'" sing N N 12 DC "C4'" "H4'" sing N N 13 DC "O4'" "C1'" sing N N 14 DC "C3'" "O3'" sing N N 15 DC "C3'" "C2'" sing N N 16 DC "C3'" "H3'" sing N N 17 DC "O3'" "HO3'" sing N N 18 DC "C2'" "C1'" sing N N 19 DC "C2'" "H2'" sing N N 20 DC "C2'" "H2''" sing N N 21 DC "C1'" N1 sing N N 22 DC "C1'" "H1'" sing N N 23 DC N1 C2 sing N N 24 DC N1 C6 sing N N 25 DC C2 O2 doub N N 26 DC C2 N3 sing N N 27 DC N3 C4 doub N N 28 DC C4 N4 sing N N 29 DC C4 C5 sing N N 30 DC N4 H41 sing N N 31 DC N4 H42 sing N N 32 DC C5 C6 doub N N 33 DC C5 H5 sing N N 34 DC C6 H6 sing N N 35 DG OP3 P sing N N 36 DG OP3 HOP3 sing N N 37 DG P OP1 doub N N 38 DG P OP2 sing N N 39 DG P "O5'" sing N N 40 DG OP2 HOP2 sing N N 41 DG "O5'" "C5'" sing N N 42 DG "C5'" "C4'" sing N N 43 DG "C5'" "H5'" sing N N 44 DG "C5'" "H5''" sing N N 45 DG "C4'" "O4'" sing N N 46 DG "C4'" "C3'" sing N N 47 DG "C4'" "H4'" sing N N 48 DG "O4'" "C1'" sing N N 49 DG "C3'" "O3'" sing N N 50 DG "C3'" "C2'" sing N N 51 DG "C3'" "H3'" sing N N 52 DG "O3'" "HO3'" sing N N 53 DG "C2'" "C1'" sing N N 54 DG "C2'" "H2'" sing N N 55 DG "C2'" "H2''" sing N N 56 DG "C1'" N9 sing N N 57 DG "C1'" "H1'" sing N N 58 DG N9 C8 sing Y N 59 DG N9 C4 sing Y N 60 DG C8 N7 doub Y N 61 DG C8 H8 sing N N 62 DG N7 C5 sing Y N 63 DG C5 C6 sing N N 64 DG C5 C4 doub Y N 65 DG C6 O6 doub N N 66 DG C6 N1 sing N N 67 DG N1 C2 sing N N 68 DG N1 H1 sing N N 69 DG C2 N2 sing N N 70 DG C2 N3 doub N N 71 DG N2 H21 sing N N 72 DG N2 H22 sing N N 73 DG N3 C4 sing N N 74 HOH O H1 sing N N 75 HOH O H2 sing N N 76 # _ndb_struct_conf_na.entry_id 1D53 _ndb_struct_conf_na.feature 'z-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 2 1_555 -0.148 -0.401 0.795 5.326 2.909 11.023 1 A_DC1:DG4_B A 1 ? B 4 ? 19 1 1 A DG 2 1_555 B DC 1 1_555 0.125 -0.220 0.371 -8.267 10.522 5.908 2 A_DG2:DC3_B A 2 ? B 3 ? 19 1 1 C DC 1 1_555 D DG 4 1_555 -0.312 -0.115 -0.117 9.611 0.103 3.518 3 C_DC5:DG12_D C 5 ? D 12 ? 19 1 1 C DG 2 1_555 D DC 3 1_555 0.274 -0.118 -0.035 -9.134 2.049 0.698 4 C_DG6:DC11_D C 6 ? D 11 ? 19 1 1 C DC 3 1_555 D DG 2 1_555 -0.315 -0.194 -0.463 11.427 2.176 2.084 5 C_DC7:DG10_D C 7 ? D 10 ? 19 1 1 C DG 4 1_555 D DC 1 1_555 0.176 -0.105 0.251 -4.553 -1.668 1.958 6 C_DG8:DC9_D C 8 ? D 9 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 2 1_555 A DG 2 1_555 B DC 1 1_555 -0.171 5.618 4.185 3.634 5.596 -8.434 -37.148 3.737 0.423 -32.212 20.916 -10.750 1 AA_DC1DG2:DC3DG4_BB A 1 ? B 4 ? A 2 ? B 3 ? 1 C DC 1 1_555 D DG 4 1_555 C DG 2 1_555 D DC 3 1_555 -0.267 5.698 3.987 0.603 -2.534 -11.824 -22.475 -0.185 5.096 12.107 2.881 -12.106 2 CC_DC5DG6:DC11DG12_DD C 5 ? D 12 ? C 6 ? D 11 ? 1 C DG 2 1_555 D DC 3 1_555 C DC 3 1_555 D DG 2 1_555 0.014 -0.569 3.038 5.101 -1.261 -48.825 0.773 0.373 3.008 1.520 6.150 -49.090 3 CC_DG6DC7:DG10DC11_DD C 6 ? D 11 ? C 7 ? D 10 ? 1 C DC 3 1_555 D DG 2 1_555 C DG 4 1_555 D DC 1 1_555 -0.155 5.609 3.842 -4.616 -2.399 -12.965 -20.034 -6.475 4.476 10.108 -19.450 -13.966 4 CC_DC7DG8:DC9DG10_DD C 7 ? D 10 ? C 8 ? D 9 ? # _atom_sites.entry_id 1D53 _atom_sites.fract_transf_matrix[1][1] 0.032258 _atom_sites.fract_transf_matrix[1][2] 0.018624 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.037248 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022883 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_