data_1D96 # _entry.id 1D96 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1D96 pdb_00001d96 10.2210/pdb1d96/pdb RCSB AHJ015 ? ? WWPDB D_1000172691 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1993-07-15 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1D96 _pdbx_database_status.recvd_initial_deposition_date 1992-10-17 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wang, A.H.-J.' 1 'Fujii, S.' 2 'Van Boom, J.H.' 3 'Van Der Marel, G.A.' 4 'Van Boeckel, S.A.A.' 5 'Rich, A.' 6 # _citation.id primary _citation.title 'Molecular structure of r(GCG)d(TATACGC): a DNA--RNA hybrid helix joined to double helical DNA.' _citation.journal_abbrev Nature _citation.journal_volume 299 _citation.page_first 601 _citation.page_last 604 _citation.year 1982 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 6181416 _citation.pdbx_database_id_DOI 10.1038/299601a0 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wang, A.H.' 1 ? primary 'Fujii, S.' 2 ? primary 'van Boom, J.H.' 3 ? primary 'van der Marel, G.A.' 4 ? primary 'van Boeckel, S.A.' 5 ? primary 'Rich, A.' 6 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description ;DNA/RNA (5'-R(*GP*CP*GP*)-D(*TP*AP*TP*AP*CP*GP*C)-3') ; _entity.formula_weight 3093.005 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polydeoxyribonucleotide/polyribonucleotide hybrid' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code 'GCG(DT)(DA)(DT)(DA)(DC)(DG)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GCGTATACGC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 G n 1 4 DT n 1 5 DA n 1 6 DT n 1 7 DA n 1 8 DC n 1 9 DG n 1 10 DC n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 C 2 2 2 C C A . n A 1 3 G 3 3 3 G G A . n A 1 4 DT 4 4 4 DT T A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DT 6 6 6 DT T A . n A 1 7 DA 7 7 7 DA A A . n A 1 8 DC 8 8 8 DC C A . n A 1 9 DG 9 9 9 DG G A . n A 1 10 DC 10 10 10 DC C A . n B 1 1 G 1 11 11 G G B . n B 1 2 C 2 12 12 C C B . n B 1 3 G 3 13 13 G G B . n B 1 4 DT 4 14 14 DT T B . n B 1 5 DA 5 15 15 DA A B . n B 1 6 DT 6 16 16 DT T B . n B 1 7 DA 7 17 17 DA A B . n B 1 8 DC 8 18 18 DC C B . n B 1 9 DG 9 19 19 DG G B . n B 1 10 DC 10 20 20 DC C B . n # _software.name NUCLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 1D96 _cell.length_a 24.200 _cell.length_b 43.460 _cell.length_c 49.400 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1D96 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1D96 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 41.42 _exptl_crystal.density_Matthews 2.10 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.00 _exptl_crystal_grow.pdbx_details 'pH 6.00, VAPOR DIFFUSION' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 'NA CACODYLATE' ? ? ? 1 3 1 SPERMINE ? ? ? 1 4 1 MGCL2 ? ? ? 1 5 2 WATER ? ? ? 1 6 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 273.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type NICOLET _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1D96 _reflns.observed_criterion_sigma_I 1.500 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 2.000 _reflns.number_obs 2521 _reflns.number_all 3798 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1D96 _refine.ls_number_reflns_obs 2521 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I 1.500 _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 2.000 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1600000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_redundancy_reflns_obs ? _refine.pdbx_overall_phase_error ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 410 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 410 _refine_hist.d_res_high 2.000 _refine_hist.d_res_low . # _database_PDB_matrix.entry_id 1D96 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1D96 _struct.title 'MOLECULAR STRUCTURE OF R(GCG)D(TATACGC): A DNA-RNA HYBRID HELIX JOINED TO DOUBLE HELICAL DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1D96 _struct_keywords.pdbx_keywords 'DNA-RNA HYBRID' _struct_keywords.text 'A-DNA/RNA, DOUBLE HELIX, DNA-RNA HYBRID' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1D96 _struct_ref.pdbx_db_accession 1D96 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1D96 A 1 ? 10 ? 1D96 1 ? 10 ? 1 10 2 1 1D96 B 1 ? 10 ? 1D96 11 ? 20 ? 11 20 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B DC 10 N3 ? ? A G 1 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B DC 10 O2 ? ? A G 1 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B DC 10 N4 ? ? A G 1 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 B DG 9 N1 ? ? A C 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 B DG 9 O6 ? ? A C 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 B DG 9 N2 ? ? A C 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 B DC 8 N3 ? ? A G 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 B DC 8 O2 ? ? A G 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 B DC 8 N4 ? ? A G 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 7 N1 ? ? A DT 4 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 7 N6 ? ? A DT 4 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 6 N3 ? ? A DA 5 B DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 6 O4 ? ? A DA 5 B DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 6 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 6 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 7 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 7 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B G 3 N1 ? ? A DC 8 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B G 3 O6 ? ? A DC 8 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B G 3 N2 ? ? A DC 8 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B C 2 N3 ? ? A DG 9 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B C 2 O2 ? ? A DG 9 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B C 2 N4 ? ? A DG 9 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B G 1 N1 ? ? A DC 10 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B G 1 O6 ? ? A DC 10 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B G 1 N2 ? ? A DC 10 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C6 A G 1 ? ? N1 A G 1 ? ? 1.336 1.391 -0.055 0.007 N 2 1 C6 A G 3 ? ? N1 A G 3 ? ? 1.339 1.391 -0.052 0.007 N 3 1 C8 A G 3 ? ? N9 A G 3 ? ? 1.329 1.374 -0.045 0.007 N 4 1 N3 A DC 8 ? ? C4 A DC 8 ? ? 1.384 1.335 0.049 0.007 N 5 1 "O3'" A DG 9 ? ? "C3'" A DG 9 ? ? 1.369 1.419 -0.050 0.006 N 6 1 C8 A DG 9 ? ? N9 A DG 9 ? ? 1.331 1.374 -0.043 0.007 N 7 1 N3 A DC 10 ? ? C4 A DC 10 ? ? 1.378 1.335 0.043 0.007 N 8 1 C6 B G 11 ? ? N1 B G 11 ? ? 1.336 1.391 -0.055 0.007 N 9 1 N3 B C 12 ? ? C4 B C 12 ? ? 1.383 1.335 0.048 0.007 N 10 1 C6 B G 13 ? ? N1 B G 13 ? ? 1.325 1.391 -0.066 0.007 N 11 1 "O3'" B DT 14 ? ? "C3'" B DT 14 ? ? 1.383 1.419 -0.036 0.006 N 12 1 C5 B DA 15 ? ? N7 B DA 15 ? ? 1.350 1.388 -0.038 0.006 N 13 1 C5 B DA 17 ? ? N7 B DA 17 ? ? 1.347 1.388 -0.041 0.006 N 14 1 C8 B DA 17 ? ? N9 B DA 17 ? ? 1.318 1.373 -0.055 0.008 N 15 1 N3 B DC 18 ? ? C4 B DC 18 ? ? 1.377 1.335 0.042 0.007 N 16 1 C6 B DG 19 ? ? N1 B DG 19 ? ? 1.342 1.391 -0.049 0.007 N 17 1 C8 B DG 19 ? ? N9 B DG 19 ? ? 1.328 1.374 -0.046 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C6 A G 1 ? ? N1 A G 1 ? ? C2 A G 1 ? ? 120.80 125.10 -4.30 0.60 N 2 1 C5 A G 1 ? ? C6 A G 1 ? ? N1 A G 1 ? ? 117.18 111.50 5.68 0.50 N 3 1 "C3'" A G 1 ? ? "O3'" A G 1 ? ? P A C 2 ? ? 130.22 119.70 10.52 1.20 Y 4 1 C2 A C 2 ? ? N3 A C 2 ? ? C4 A C 2 ? ? 124.40 119.90 4.50 0.50 N 5 1 N3 A C 2 ? ? C4 A C 2 ? ? C5 A C 2 ? ? 116.43 121.90 -5.47 0.40 N 6 1 C5 A C 2 ? ? C4 A C 2 ? ? N4 A C 2 ? ? 124.41 120.20 4.21 0.70 N 7 1 "O4'" A G 3 ? ? "C1'" A G 3 ? ? N9 A G 3 ? ? 100.23 108.20 -7.97 0.80 N 8 1 C6 A G 3 ? ? N1 A G 3 ? ? C2 A G 3 ? ? 120.66 125.10 -4.44 0.60 N 9 1 C5 A G 3 ? ? C6 A G 3 ? ? N1 A G 3 ? ? 116.92 111.50 5.42 0.50 N 10 1 "C3'" A G 3 ? ? "O3'" A G 3 ? ? P A DT 4 ? ? 111.09 119.70 -8.61 1.20 Y 11 1 "O4'" A DA 5 ? ? "C4'" A DA 5 ? ? "C3'" A DA 5 ? ? 100.48 104.50 -4.02 0.40 N 12 1 "O4'" A DT 6 ? ? "C4'" A DT 6 ? ? "C3'" A DT 6 ? ? 98.87 104.50 -5.63 0.40 N 13 1 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 100.41 108.00 -7.59 0.70 N 14 1 "O5'" A DA 7 ? ? "C5'" A DA 7 ? ? "C4'" A DA 7 ? ? 102.11 109.40 -7.29 0.80 N 15 1 "O4'" A DA 7 ? ? "C4'" A DA 7 ? ? "C3'" A DA 7 ? ? 99.61 104.50 -4.89 0.40 N 16 1 "C3'" A DA 7 ? ? "O3'" A DA 7 ? ? P A DC 8 ? ? 110.32 119.70 -9.38 1.20 Y 17 1 "O4'" A DC 8 ? ? "C4'" A DC 8 ? ? "C3'" A DC 8 ? ? 99.55 104.50 -4.95 0.40 N 18 1 C2 A DC 8 ? ? N3 A DC 8 ? ? C4 A DC 8 ? ? 123.76 119.90 3.86 0.50 N 19 1 N3 A DC 8 ? ? C4 A DC 8 ? ? C5 A DC 8 ? ? 117.09 121.90 -4.81 0.40 N 20 1 P A DG 9 ? ? "O5'" A DG 9 ? ? "C5'" A DG 9 ? ? 131.76 120.90 10.86 1.60 N 21 1 "O4'" A DG 9 ? ? "C4'" A DG 9 ? ? "C3'" A DG 9 ? ? 96.98 104.50 -7.52 0.40 N 22 1 "C3'" A DG 9 ? ? "C2'" A DG 9 ? ? "C1'" A DG 9 ? ? 94.47 102.40 -7.93 0.80 N 23 1 C6 A DG 9 ? ? N1 A DG 9 ? ? C2 A DG 9 ? ? 121.25 125.10 -3.85 0.60 N 24 1 C5 A DG 9 ? ? C6 A DG 9 ? ? N1 A DG 9 ? ? 116.74 111.50 5.24 0.50 N 25 1 N3 A DG 9 ? ? C2 A DG 9 ? ? N2 A DG 9 ? ? 113.80 119.90 -6.10 0.70 N 26 1 C5 A DG 9 ? ? C6 A DG 9 ? ? O6 A DG 9 ? ? 123.73 128.60 -4.87 0.60 N 27 1 C8 A DG 9 ? ? N9 A DG 9 ? ? "C1'" A DG 9 ? ? 134.87 127.00 7.87 1.30 N 28 1 "O5'" A DC 10 ? ? "C5'" A DC 10 ? ? "C4'" A DC 10 ? ? 103.19 109.40 -6.21 0.80 N 29 1 "O4'" A DC 10 ? ? "C4'" A DC 10 ? ? "C3'" A DC 10 ? ? 100.61 104.50 -3.89 0.40 N 30 1 C2 A DC 10 ? ? N3 A DC 10 ? ? C4 A DC 10 ? ? 123.43 119.90 3.53 0.50 N 31 1 N3 A DC 10 ? ? C4 A DC 10 ? ? C5 A DC 10 ? ? 117.70 121.90 -4.20 0.40 N 32 1 C5 A DC 10 ? ? C4 A DC 10 ? ? N4 A DC 10 ? ? 124.77 120.20 4.57 0.70 N 33 1 "O4'" B G 11 ? ? "C1'" B G 11 ? ? N9 B G 11 ? ? 103.33 108.20 -4.87 0.80 N 34 1 C6 B G 11 ? ? N1 B G 11 ? ? C2 B G 11 ? ? 120.14 125.10 -4.96 0.60 N 35 1 N1 B G 11 ? ? C2 B G 11 ? ? N3 B G 11 ? ? 128.31 123.90 4.41 0.60 N 36 1 C5 B G 11 ? ? C6 B G 11 ? ? N1 B G 11 ? ? 117.00 111.50 5.50 0.50 N 37 1 N3 B G 11 ? ? C2 B G 11 ? ? N2 B G 11 ? ? 115.57 119.90 -4.33 0.70 N 38 1 C5 B G 11 ? ? C6 B G 11 ? ? O6 B G 11 ? ? 122.21 128.60 -6.39 0.60 N 39 1 "O4'" B C 12 ? ? "C4'" B C 12 ? ? "C3'" B C 12 ? ? 96.77 104.00 -7.23 1.00 N 40 1 C2 B C 12 ? ? N3 B C 12 ? ? C4 B C 12 ? ? 124.64 119.90 4.74 0.50 N 41 1 N3 B C 12 ? ? C4 B C 12 ? ? C5 B C 12 ? ? 117.61 121.90 -4.29 0.40 N 42 1 C5 B C 12 ? ? C4 B C 12 ? ? N4 B C 12 ? ? 125.22 120.20 5.02 0.70 N 43 1 C6 B G 13 ? ? N1 B G 13 ? ? C2 B G 13 ? ? 120.04 125.10 -5.06 0.60 N 44 1 N1 B G 13 ? ? C2 B G 13 ? ? N3 B G 13 ? ? 128.50 123.90 4.60 0.60 N 45 1 C5 B G 13 ? ? C6 B G 13 ? ? N1 B G 13 ? ? 116.50 111.50 5.00 0.50 N 46 1 N3 B G 13 ? ? C2 B G 13 ? ? N2 B G 13 ? ? 113.94 119.90 -5.96 0.70 N 47 1 C5 B G 13 ? ? C6 B G 13 ? ? O6 B G 13 ? ? 123.51 128.60 -5.09 0.60 N 48 1 "O5'" B DT 14 ? ? "C5'" B DT 14 ? ? "C4'" B DT 14 ? ? 102.99 109.40 -6.41 0.80 N 49 1 "O4'" B DT 14 ? ? "C4'" B DT 14 ? ? "C3'" B DT 14 ? ? 99.18 104.50 -5.32 0.40 N 50 1 C2 B DT 14 ? ? N3 B DT 14 ? ? C4 B DT 14 ? ? 122.62 127.20 -4.58 0.60 N 51 1 "O4'" B DA 15 ? ? "C1'" B DA 15 ? ? N9 B DA 15 ? ? 102.61 108.00 -5.39 0.70 N 52 1 "O4'" B DT 16 ? ? "C4'" B DT 16 ? ? "C3'" B DT 16 ? ? 100.89 104.50 -3.61 0.40 N 53 1 "C3'" B DT 16 ? ? "O3'" B DT 16 ? ? P B DA 17 ? ? 127.76 119.70 8.06 1.20 Y 54 1 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? N9 B DA 17 ? ? 113.41 108.30 5.11 0.30 N 55 1 C2 B DC 18 ? ? N3 B DC 18 ? ? C4 B DC 18 ? ? 123.20 119.90 3.30 0.50 N 56 1 N3 B DC 18 ? ? C4 B DC 18 ? ? C5 B DC 18 ? ? 118.29 121.90 -3.61 0.40 N 57 1 C5 B DC 18 ? ? C4 B DC 18 ? ? N4 B DC 18 ? ? 125.59 120.20 5.39 0.70 N 58 1 "O4'" B DG 19 ? ? "C4'" B DG 19 ? ? "C3'" B DG 19 ? ? 101.23 104.50 -3.27 0.40 N 59 1 "O4'" B DG 19 ? ? "C1'" B DG 19 ? ? N9 B DG 19 ? ? 102.46 108.00 -5.54 0.70 N 60 1 C6 B DG 19 ? ? N1 B DG 19 ? ? C2 B DG 19 ? ? 120.01 125.10 -5.09 0.60 N 61 1 N1 B DG 19 ? ? C2 B DG 19 ? ? N3 B DG 19 ? ? 127.52 123.90 3.62 0.60 N 62 1 C5 B DG 19 ? ? C6 B DG 19 ? ? N1 B DG 19 ? ? 117.06 111.50 5.56 0.50 N 63 1 C5 B DG 19 ? ? C6 B DG 19 ? ? O6 B DG 19 ? ? 123.58 128.60 -5.02 0.60 N 64 1 C2 B DC 20 ? ? N3 B DC 20 ? ? C4 B DC 20 ? ? 125.73 119.90 5.83 0.50 N 65 1 N3 B DC 20 ? ? C4 B DC 20 ? ? C5 B DC 20 ? ? 116.60 121.90 -5.30 0.40 N 66 1 N1 B DC 20 ? ? C2 B DC 20 ? ? O2 B DC 20 ? ? 124.08 118.90 5.18 0.60 N 67 1 N3 B DC 20 ? ? C4 B DC 20 ? ? N4 B DC 20 ? ? 113.75 118.00 -4.25 0.70 N 68 1 C5 B DC 20 ? ? C4 B DC 20 ? ? N4 B DC 20 ? ? 129.65 120.20 9.45 0.70 N # _refine_B_iso.class 'ALL ATOMS' _refine_B_iso.details TR _refine_B_iso.treatment isotropic _refine_B_iso.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_occupancy.class 'ALL ATOMS' _refine_occupancy.treatment fix _refine_occupancy.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal C OP3 O N N 1 C P P N N 2 C OP1 O N N 3 C OP2 O N N 4 C "O5'" O N N 5 C "C5'" C N N 6 C "C4'" C N R 7 C "O4'" O N N 8 C "C3'" C N S 9 C "O3'" O N N 10 C "C2'" C N R 11 C "O2'" O N N 12 C "C1'" C N R 13 C N1 N N N 14 C C2 C N N 15 C O2 O N N 16 C N3 N N N 17 C C4 C N N 18 C N4 N N N 19 C C5 C N N 20 C C6 C N N 21 C HOP3 H N N 22 C HOP2 H N N 23 C "H5'" H N N 24 C "H5''" H N N 25 C "H4'" H N N 26 C "H3'" H N N 27 C "HO3'" H N N 28 C "H2'" H N N 29 C "HO2'" H N N 30 C "H1'" H N N 31 C H41 H N N 32 C H42 H N N 33 C H5 H N N 34 C H6 H N N 35 DA OP3 O N N 36 DA P P N N 37 DA OP1 O N N 38 DA OP2 O N N 39 DA "O5'" O N N 40 DA "C5'" C N N 41 DA "C4'" C N R 42 DA "O4'" O N N 43 DA "C3'" C N S 44 DA "O3'" O N N 45 DA "C2'" C N N 46 DA "C1'" C N R 47 DA N9 N Y N 48 DA C8 C Y N 49 DA N7 N Y N 50 DA C5 C Y N 51 DA C6 C Y N 52 DA N6 N N N 53 DA N1 N Y N 54 DA C2 C Y N 55 DA N3 N Y N 56 DA C4 C Y N 57 DA HOP3 H N N 58 DA HOP2 H N N 59 DA "H5'" H N N 60 DA "H5''" H N N 61 DA "H4'" H N N 62 DA "H3'" H N N 63 DA "HO3'" H N N 64 DA "H2'" H N N 65 DA "H2''" H N N 66 DA "H1'" H N N 67 DA H8 H N N 68 DA H61 H N N 69 DA H62 H N N 70 DA H2 H N N 71 DC OP3 O N N 72 DC P P N N 73 DC OP1 O N N 74 DC OP2 O N N 75 DC "O5'" O N N 76 DC "C5'" C N N 77 DC "C4'" C N R 78 DC "O4'" O N N 79 DC "C3'" C N S 80 DC "O3'" O N N 81 DC "C2'" C N N 82 DC "C1'" C N R 83 DC N1 N N N 84 DC C2 C N N 85 DC O2 O N N 86 DC N3 N N N 87 DC C4 C N N 88 DC N4 N N N 89 DC C5 C N N 90 DC C6 C N N 91 DC HOP3 H N N 92 DC HOP2 H N N 93 DC "H5'" H N N 94 DC "H5''" H N N 95 DC "H4'" H N N 96 DC "H3'" H N N 97 DC "HO3'" H N N 98 DC "H2'" H N N 99 DC "H2''" H N N 100 DC "H1'" H N N 101 DC H41 H N N 102 DC H42 H N N 103 DC H5 H N N 104 DC H6 H N N 105 DG OP3 O N N 106 DG P P N N 107 DG OP1 O N N 108 DG OP2 O N N 109 DG "O5'" O N N 110 DG "C5'" C N N 111 DG "C4'" C N R 112 DG "O4'" O N N 113 DG "C3'" C N S 114 DG "O3'" O N N 115 DG "C2'" C N N 116 DG "C1'" C N R 117 DG N9 N Y N 118 DG C8 C Y N 119 DG N7 N Y N 120 DG C5 C Y N 121 DG C6 C N N 122 DG O6 O N N 123 DG N1 N N N 124 DG C2 C N N 125 DG N2 N N N 126 DG N3 N N N 127 DG C4 C Y N 128 DG HOP3 H N N 129 DG HOP2 H N N 130 DG "H5'" H N N 131 DG "H5''" H N N 132 DG "H4'" H N N 133 DG "H3'" H N N 134 DG "HO3'" H N N 135 DG "H2'" H N N 136 DG "H2''" H N N 137 DG "H1'" H N N 138 DG H8 H N N 139 DG H1 H N N 140 DG H21 H N N 141 DG H22 H N N 142 DT OP3 O N N 143 DT P P N N 144 DT OP1 O N N 145 DT OP2 O N N 146 DT "O5'" O N N 147 DT "C5'" C N N 148 DT "C4'" C N R 149 DT "O4'" O N N 150 DT "C3'" C N S 151 DT "O3'" O N N 152 DT "C2'" C N N 153 DT "C1'" C N R 154 DT N1 N N N 155 DT C2 C N N 156 DT O2 O N N 157 DT N3 N N N 158 DT C4 C N N 159 DT O4 O N N 160 DT C5 C N N 161 DT C7 C N N 162 DT C6 C N N 163 DT HOP3 H N N 164 DT HOP2 H N N 165 DT "H5'" H N N 166 DT "H5''" H N N 167 DT "H4'" H N N 168 DT "H3'" H N N 169 DT "HO3'" H N N 170 DT "H2'" H N N 171 DT "H2''" H N N 172 DT "H1'" H N N 173 DT H3 H N N 174 DT H71 H N N 175 DT H72 H N N 176 DT H73 H N N 177 DT H6 H N N 178 G OP3 O N N 179 G P P N N 180 G OP1 O N N 181 G OP2 O N N 182 G "O5'" O N N 183 G "C5'" C N N 184 G "C4'" C N R 185 G "O4'" O N N 186 G "C3'" C N S 187 G "O3'" O N N 188 G "C2'" C N R 189 G "O2'" O N N 190 G "C1'" C N R 191 G N9 N Y N 192 G C8 C Y N 193 G N7 N Y N 194 G C5 C Y N 195 G C6 C N N 196 G O6 O N N 197 G N1 N N N 198 G C2 C N N 199 G N2 N N N 200 G N3 N N N 201 G C4 C Y N 202 G HOP3 H N N 203 G HOP2 H N N 204 G "H5'" H N N 205 G "H5''" H N N 206 G "H4'" H N N 207 G "H3'" H N N 208 G "HO3'" H N N 209 G "H2'" H N N 210 G "HO2'" H N N 211 G "H1'" H N N 212 G H8 H N N 213 G H1 H N N 214 G H21 H N N 215 G H22 H N N 216 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C OP3 P sing N N 1 C OP3 HOP3 sing N N 2 C P OP1 doub N N 3 C P OP2 sing N N 4 C P "O5'" sing N N 5 C OP2 HOP2 sing N N 6 C "O5'" "C5'" sing N N 7 C "C5'" "C4'" sing N N 8 C "C5'" "H5'" sing N N 9 C "C5'" "H5''" sing N N 10 C "C4'" "O4'" sing N N 11 C "C4'" "C3'" sing N N 12 C "C4'" "H4'" sing N N 13 C "O4'" "C1'" sing N N 14 C "C3'" "O3'" sing N N 15 C "C3'" "C2'" sing N N 16 C "C3'" "H3'" sing N N 17 C "O3'" "HO3'" sing N N 18 C "C2'" "O2'" sing N N 19 C "C2'" "C1'" sing N N 20 C "C2'" "H2'" sing N N 21 C "O2'" "HO2'" sing N N 22 C "C1'" N1 sing N N 23 C "C1'" "H1'" sing N N 24 C N1 C2 sing N N 25 C N1 C6 sing N N 26 C C2 O2 doub N N 27 C C2 N3 sing N N 28 C N3 C4 doub N N 29 C C4 N4 sing N N 30 C C4 C5 sing N N 31 C N4 H41 sing N N 32 C N4 H42 sing N N 33 C C5 C6 doub N N 34 C C5 H5 sing N N 35 C C6 H6 sing N N 36 DA OP3 P sing N N 37 DA OP3 HOP3 sing N N 38 DA P OP1 doub N N 39 DA P OP2 sing N N 40 DA P "O5'" sing N N 41 DA OP2 HOP2 sing N N 42 DA "O5'" "C5'" sing N N 43 DA "C5'" "C4'" sing N N 44 DA "C5'" "H5'" sing N N 45 DA "C5'" "H5''" sing N N 46 DA "C4'" "O4'" sing N N 47 DA "C4'" "C3'" sing N N 48 DA "C4'" "H4'" sing N N 49 DA "O4'" "C1'" sing N N 50 DA "C3'" "O3'" sing N N 51 DA "C3'" "C2'" sing N N 52 DA "C3'" "H3'" sing N N 53 DA "O3'" "HO3'" sing N N 54 DA "C2'" "C1'" sing N N 55 DA "C2'" "H2'" sing N N 56 DA "C2'" "H2''" sing N N 57 DA "C1'" N9 sing N N 58 DA "C1'" "H1'" sing N N 59 DA N9 C8 sing Y N 60 DA N9 C4 sing Y N 61 DA C8 N7 doub Y N 62 DA C8 H8 sing N N 63 DA N7 C5 sing Y N 64 DA C5 C6 sing Y N 65 DA C5 C4 doub Y N 66 DA C6 N6 sing N N 67 DA C6 N1 doub Y N 68 DA N6 H61 sing N N 69 DA N6 H62 sing N N 70 DA N1 C2 sing Y N 71 DA C2 N3 doub Y N 72 DA C2 H2 sing N N 73 DA N3 C4 sing Y N 74 DC OP3 P sing N N 75 DC OP3 HOP3 sing N N 76 DC P OP1 doub N N 77 DC P OP2 sing N N 78 DC P "O5'" sing N N 79 DC OP2 HOP2 sing N N 80 DC "O5'" "C5'" sing N N 81 DC "C5'" "C4'" sing N N 82 DC "C5'" "H5'" sing N N 83 DC "C5'" "H5''" sing N N 84 DC "C4'" "O4'" sing N N 85 DC "C4'" "C3'" sing N N 86 DC "C4'" "H4'" sing N N 87 DC "O4'" "C1'" sing N N 88 DC "C3'" "O3'" sing N N 89 DC "C3'" "C2'" sing N N 90 DC "C3'" "H3'" sing N N 91 DC "O3'" "HO3'" sing N N 92 DC "C2'" "C1'" sing N N 93 DC "C2'" "H2'" sing N N 94 DC "C2'" "H2''" sing N N 95 DC "C1'" N1 sing N N 96 DC "C1'" "H1'" sing N N 97 DC N1 C2 sing N N 98 DC N1 C6 sing N N 99 DC C2 O2 doub N N 100 DC C2 N3 sing N N 101 DC N3 C4 doub N N 102 DC C4 N4 sing N N 103 DC C4 C5 sing N N 104 DC N4 H41 sing N N 105 DC N4 H42 sing N N 106 DC C5 C6 doub N N 107 DC C5 H5 sing N N 108 DC C6 H6 sing N N 109 DG OP3 P sing N N 110 DG OP3 HOP3 sing N N 111 DG P OP1 doub N N 112 DG P OP2 sing N N 113 DG P "O5'" sing N N 114 DG OP2 HOP2 sing N N 115 DG "O5'" "C5'" sing N N 116 DG "C5'" "C4'" sing N N 117 DG "C5'" "H5'" sing N N 118 DG "C5'" "H5''" sing N N 119 DG "C4'" "O4'" sing N N 120 DG "C4'" "C3'" sing N N 121 DG "C4'" "H4'" sing N N 122 DG "O4'" "C1'" sing N N 123 DG "C3'" "O3'" sing N N 124 DG "C3'" "C2'" sing N N 125 DG "C3'" "H3'" sing N N 126 DG "O3'" "HO3'" sing N N 127 DG "C2'" "C1'" sing N N 128 DG "C2'" "H2'" sing N N 129 DG "C2'" "H2''" sing N N 130 DG "C1'" N9 sing N N 131 DG "C1'" "H1'" sing N N 132 DG N9 C8 sing Y N 133 DG N9 C4 sing Y N 134 DG C8 N7 doub Y N 135 DG C8 H8 sing N N 136 DG N7 C5 sing Y N 137 DG C5 C6 sing N N 138 DG C5 C4 doub Y N 139 DG C6 O6 doub N N 140 DG C6 N1 sing N N 141 DG N1 C2 sing N N 142 DG N1 H1 sing N N 143 DG C2 N2 sing N N 144 DG C2 N3 doub N N 145 DG N2 H21 sing N N 146 DG N2 H22 sing N N 147 DG N3 C4 sing N N 148 DT OP3 P sing N N 149 DT OP3 HOP3 sing N N 150 DT P OP1 doub N N 151 DT P OP2 sing N N 152 DT P "O5'" sing N N 153 DT OP2 HOP2 sing N N 154 DT "O5'" "C5'" sing N N 155 DT "C5'" "C4'" sing N N 156 DT "C5'" "H5'" sing N N 157 DT "C5'" "H5''" sing N N 158 DT "C4'" "O4'" sing N N 159 DT "C4'" "C3'" sing N N 160 DT "C4'" "H4'" sing N N 161 DT "O4'" "C1'" sing N N 162 DT "C3'" "O3'" sing N N 163 DT "C3'" "C2'" sing N N 164 DT "C3'" "H3'" sing N N 165 DT "O3'" "HO3'" sing N N 166 DT "C2'" "C1'" sing N N 167 DT "C2'" "H2'" sing N N 168 DT "C2'" "H2''" sing N N 169 DT "C1'" N1 sing N N 170 DT "C1'" "H1'" sing N N 171 DT N1 C2 sing N N 172 DT N1 C6 sing N N 173 DT C2 O2 doub N N 174 DT C2 N3 sing N N 175 DT N3 C4 sing N N 176 DT N3 H3 sing N N 177 DT C4 O4 doub N N 178 DT C4 C5 sing N N 179 DT C5 C7 sing N N 180 DT C5 C6 doub N N 181 DT C7 H71 sing N N 182 DT C7 H72 sing N N 183 DT C7 H73 sing N N 184 DT C6 H6 sing N N 185 G OP3 P sing N N 186 G OP3 HOP3 sing N N 187 G P OP1 doub N N 188 G P OP2 sing N N 189 G P "O5'" sing N N 190 G OP2 HOP2 sing N N 191 G "O5'" "C5'" sing N N 192 G "C5'" "C4'" sing N N 193 G "C5'" "H5'" sing N N 194 G "C5'" "H5''" sing N N 195 G "C4'" "O4'" sing N N 196 G "C4'" "C3'" sing N N 197 G "C4'" "H4'" sing N N 198 G "O4'" "C1'" sing N N 199 G "C3'" "O3'" sing N N 200 G "C3'" "C2'" sing N N 201 G "C3'" "H3'" sing N N 202 G "O3'" "HO3'" sing N N 203 G "C2'" "O2'" sing N N 204 G "C2'" "C1'" sing N N 205 G "C2'" "H2'" sing N N 206 G "O2'" "HO2'" sing N N 207 G "C1'" N9 sing N N 208 G "C1'" "H1'" sing N N 209 G N9 C8 sing Y N 210 G N9 C4 sing Y N 211 G C8 N7 doub Y N 212 G C8 H8 sing N N 213 G N7 C5 sing Y N 214 G C5 C6 sing N N 215 G C5 C4 doub Y N 216 G C6 O6 doub N N 217 G C6 N1 sing N N 218 G N1 C2 sing N N 219 G N1 H1 sing N N 220 G C2 N2 sing N N 221 G C2 N3 doub N N 222 G N2 H21 sing N N 223 G N2 H22 sing N N 224 G N3 C4 sing N N 225 # _ndb_struct_conf_na.entry_id 1D96 _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B DC 10 1_555 -0.145 -0.078 0.080 4.597 -8.483 -4.871 1 A_G1:DC20_B A 1 ? B 20 ? 19 1 1 A C 2 1_555 B DG 9 1_555 0.341 -0.255 0.196 3.773 -11.784 2.812 2 A_C2:DG19_B A 2 ? B 19 ? 19 1 1 A G 3 1_555 B DC 8 1_555 -0.077 0.014 0.007 -9.215 -15.100 4.674 3 A_G3:DC18_B A 3 ? B 18 ? 19 1 1 A DT 4 1_555 B DA 7 1_555 -0.027 -0.068 0.079 4.201 -9.837 -3.860 4 A_DT4:DA17_B A 4 ? B 17 ? 20 1 1 A DA 5 1_555 B DT 6 1_555 -0.073 -0.053 0.163 0.738 -14.908 4.612 5 A_DA5:DT16_B A 5 ? B 16 ? 20 1 1 A DT 6 1_555 B DA 5 1_555 -0.396 -0.154 0.018 6.455 -11.697 11.435 6 A_DT6:DA15_B A 6 ? B 15 ? 20 1 1 A DA 7 1_555 B DT 4 1_555 -0.469 -0.248 0.069 3.717 -11.704 6.368 7 A_DA7:DT14_B A 7 ? B 14 ? 20 1 1 A DC 8 1_555 B G 3 1_555 0.310 -0.338 0.329 6.935 -11.304 1.923 8 A_DC8:G13_B A 8 ? B 13 ? 19 1 1 A DG 9 1_555 B C 2 1_555 -0.206 -0.280 0.282 2.385 -14.800 -4.107 9 A_DG9:C12_B A 9 ? B 12 ? 19 1 1 A DC 10 1_555 B G 1 1_555 -0.112 -0.325 -0.007 0.671 -2.953 -4.879 10 A_DC10:G11_B A 10 ? B 11 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B DC 10 1_555 A C 2 1_555 B DG 9 1_555 0.726 -1.795 3.415 0.613 2.278 39.922 -2.894 -0.989 3.323 3.332 -0.897 39.989 1 AA_G1C2:DG19DC20_BB A 1 ? B 20 ? A 2 ? B 19 ? 1 A C 2 1_555 B DG 9 1_555 A G 3 1_555 B DC 8 1_555 -0.443 -1.769 3.547 1.739 9.175 28.551 -5.304 1.213 2.824 18.005 -3.414 30.009 2 AA_C2G3:DC18DG19_BB A 2 ? B 19 ? A 3 ? B 18 ? 1 A G 3 1_555 B DC 8 1_555 A DT 4 1_555 B DA 7 1_555 -0.566 -1.231 2.957 -1.159 6.169 31.172 -3.232 0.848 2.689 11.336 2.130 31.782 3 AA_G3DT4:DA17DC18_BB A 3 ? B 18 ? A 4 ? B 17 ? 1 A DT 4 1_555 B DA 7 1_555 A DA 5 1_555 B DT 6 1_555 0.159 -1.228 3.307 0.380 18.747 27.834 -4.938 -0.219 2.091 34.462 -0.698 33.457 4 AA_DT4DA5:DT16DA17_BB A 4 ? B 17 ? A 5 ? B 16 ? 1 A DA 5 1_555 B DT 6 1_555 A DT 6 1_555 B DA 5 1_555 0.689 -1.521 3.148 0.325 7.990 29.812 -4.268 -1.238 2.667 15.189 -0.617 30.842 5 AA_DA5DT6:DA15DT16_BB A 5 ? B 16 ? A 6 ? B 15 ? 1 A DT 6 1_555 B DA 5 1_555 A DA 7 1_555 B DT 4 1_555 -0.213 -1.106 3.204 -1.513 15.225 26.273 -4.863 0.135 2.248 30.433 3.025 30.336 6 AA_DT6DA7:DT14DA15_BB A 6 ? B 15 ? A 7 ? B 14 ? 1 A DA 7 1_555 B DT 4 1_555 A DC 8 1_555 B G 3 1_555 -0.445 -1.457 3.326 -5.000 2.287 35.261 -2.713 -0.007 3.259 3.746 8.192 35.674 7 AA_DA7DC8:G13DT14_BB A 7 ? B 14 ? A 8 ? B 13 ? 1 A DC 8 1_555 B G 3 1_555 A DG 9 1_555 B C 2 1_555 -0.524 -1.545 3.211 1.994 11.289 30.406 -4.542 1.251 2.458 20.625 -3.643 32.447 8 AA_DC8DG9:C12G13_BB A 8 ? B 13 ? A 9 ? B 12 ? 1 A DG 9 1_555 B C 2 1_555 A DC 10 1_555 B G 1 1_555 0.375 -1.340 3.589 3.199 2.911 34.860 -2.693 -0.101 3.489 4.836 -5.314 35.119 9 AA_DG9DC10:G11C12_BB A 9 ? B 12 ? A 10 ? B 11 ? # _atom_sites.entry_id 1D96 _atom_sites.fract_transf_matrix[1][1] 0.041322 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023010 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020243 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_