data_1DDY # _entry.id 1DDY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1DDY pdb_00001ddy 10.2210/pdb1ddy/pdb NDB UR0008 ? ? RCSB RCSB010003 ? ? WWPDB D_1000010003 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-01-01 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-12-28 5 'Structure model' 1 4 2012-10-24 6 'Structure model' 1 5 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Advisory 4 5 'Structure model' 'Non-polymer description' 5 6 'Structure model' 'Data collection' 6 6 'Structure model' 'Database references' 7 6 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 6 'Structure model' chem_comp_atom 2 6 'Structure model' chem_comp_bond 3 6 'Structure model' database_2 4 6 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 6 'Structure model' '_database_2.pdbx_DOI' 2 6 'Structure model' '_database_2.pdbx_database_accession' 3 6 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 6 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 6 'Structure model' '_struct_site.pdbx_auth_seq_id' # _database_PDB_caveat.id 1 _database_PDB_caveat.text ;6 C3' ATOMS HAVE INCORRECT CHIRALITY ; # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1DDY _pdbx_database_status.recvd_initial_deposition_date 1999-11-12 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sussman, D.' 1 'Nix, J.C.' 2 'Wilson, C.' 3 # _citation.id primary _citation.title 'The structural basis for molecular recognition by the vitamin B 12 RNA aptamer.' _citation.journal_abbrev Nat.Struct.Biol. _citation.journal_volume 7 _citation.page_first 53 _citation.page_last 57 _citation.year 2000 _citation.journal_id_ASTM NSBIEW _citation.country US _citation.journal_id_ISSN 1072-8368 _citation.journal_id_CSD 2024 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10625428 _citation.pdbx_database_id_DOI 10.1038/71253 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sussman, D.' 1 ? primary 'Nix, J.C.' 2 ? primary 'Wilson, C.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'VITAMIN B12 BINDING RNA' 11280.819 4 ? ? ? 'COMPLEXED WITH COBALAMIN, VITAMIN B12' 2 non-polymer syn COBALAMIN 1330.356 4 ? ? ? ? 3 non-polymer syn METHYLAMINE 31.057 4 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGAACCGGUGCGCAUAACCACCUCAGUGCGAGCAA _entity_poly.pdbx_seq_one_letter_code_can GGAACCGGUGCGCAUAACCACCUCAGUGCGAGCAA _entity_poly.pdbx_strand_id A,C,E,G _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 COBALAMIN B12 3 METHYLAMINE NME # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 A n 1 5 C n 1 6 C n 1 7 G n 1 8 G n 1 9 U n 1 10 G n 1 11 C n 1 12 G n 1 13 C n 1 14 A n 1 15 U n 1 16 A n 1 17 A n 1 18 C n 1 19 C n 1 20 A n 1 21 C n 1 22 C n 1 23 U n 1 24 C n 1 25 A n 1 26 G n 1 27 U n 1 28 G n 1 29 C n 1 30 G n 1 31 A n 1 32 G n 1 33 C n 1 34 A n 1 35 A n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'SEQUENCE RESULTS FROM IN VITRO SELECTION EXPERIMENTS' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 B12 non-polymer . COBALAMIN ? 'C62 H89 Co N13 O14 P 2' 1330.356 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 NME non-polymer . METHYLAMINE ? 'C H5 N' 31.057 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 A 3 3 3 A A A . n A 1 4 A 4 4 4 A A A . n A 1 5 C 5 5 5 C C A . n A 1 6 C 6 6 6 C C A . n A 1 7 G 7 7 7 G G A . n A 1 8 G 8 8 8 G G A . n A 1 9 U 9 9 9 U U A . n A 1 10 G 10 10 10 G G A . n A 1 11 C 11 11 11 C C A . n A 1 12 G 12 12 12 G G A . n A 1 13 C 13 13 13 C C A . n A 1 14 A 14 14 14 A A A . n A 1 15 U 15 15 15 U U A . n A 1 16 A 16 16 16 A A A . n A 1 17 A 17 17 17 A A A . n A 1 18 C 18 18 18 C C A . n A 1 19 C 19 19 19 C C A . n A 1 20 A 20 20 20 A A A . n A 1 21 C 21 21 21 C C A . n A 1 22 C 22 22 22 C C A . n A 1 23 U 23 23 23 U U A . n A 1 24 C 24 24 24 C C A . n A 1 25 A 25 25 25 A A A . n A 1 26 G 26 26 26 G G A . n A 1 27 U 27 27 27 U U A . n A 1 28 G 28 28 28 G G A . n A 1 29 C 29 29 29 C C A . n A 1 30 G 30 30 30 G G A . n A 1 31 A 31 31 31 A A A . n A 1 32 G 32 32 32 G G A . n A 1 33 C 33 33 33 C C A . n A 1 34 A 34 34 34 A A A . n A 1 35 A 35 35 35 A A A . n B 1 1 G 1 201 201 G G C . n B 1 2 G 2 202 202 G G C . n B 1 3 A 3 203 203 A A C . n B 1 4 A 4 204 204 A A C . n B 1 5 C 5 205 205 C C C . n B 1 6 C 6 206 206 C C C . n B 1 7 G 7 207 207 G G C . n B 1 8 G 8 208 208 G G C . n B 1 9 U 9 209 209 U U C . n B 1 10 G 10 210 210 G G C . n B 1 11 C 11 211 211 C C C . n B 1 12 G 12 212 212 G G C . n B 1 13 C 13 213 213 C C C . n B 1 14 A 14 214 214 A A C . n B 1 15 U 15 215 215 U U C . n B 1 16 A 16 216 216 A A C . n B 1 17 A 17 217 217 A A C . n B 1 18 C 18 218 218 C C C . n B 1 19 C 19 219 219 C C C . n B 1 20 A 20 220 220 A A C . n B 1 21 C 21 221 221 C C C . n B 1 22 C 22 222 222 C C C . n B 1 23 U 23 223 223 U U C . n B 1 24 C 24 224 224 C C C . n B 1 25 A 25 225 225 A A C . n B 1 26 G 26 226 226 G G C . n B 1 27 U 27 227 227 U U C . n B 1 28 G 28 228 228 G G C . n B 1 29 C 29 229 229 C C C . n B 1 30 G 30 230 230 G G C . n B 1 31 A 31 231 231 A A C . n B 1 32 G 32 232 232 G G C . n B 1 33 C 33 233 233 C C C . n B 1 34 A 34 234 234 A A C . n B 1 35 A 35 235 235 A A C . n C 1 1 G 1 401 401 G G E . n C 1 2 G 2 402 402 G G E . n C 1 3 A 3 403 403 A A E . n C 1 4 A 4 404 404 A A E . n C 1 5 C 5 405 405 C C E . n C 1 6 C 6 406 406 C C E . n C 1 7 G 7 407 407 G G E . n C 1 8 G 8 408 408 G G E . n C 1 9 U 9 409 409 U U E . n C 1 10 G 10 410 410 G G E . n C 1 11 C 11 411 411 C C E . n C 1 12 G 12 412 412 G G E . n C 1 13 C 13 413 413 C C E . n C 1 14 A 14 414 414 A A E . n C 1 15 U 15 415 415 U U E . n C 1 16 A 16 416 416 A A E . n C 1 17 A 17 417 417 A A E . n C 1 18 C 18 418 418 C C E . n C 1 19 C 19 419 419 C C E . n C 1 20 A 20 420 420 A A E . n C 1 21 C 21 421 421 C C E . n C 1 22 C 22 422 422 C C E . n C 1 23 U 23 423 423 U U E . n C 1 24 C 24 424 424 C C E . n C 1 25 A 25 425 425 A A E . n C 1 26 G 26 426 426 G G E . n C 1 27 U 27 427 427 U U E . n C 1 28 G 28 428 428 G G E . n C 1 29 C 29 429 429 C C E . n C 1 30 G 30 430 430 G G E . n C 1 31 A 31 431 431 A A E . n C 1 32 G 32 432 432 G G E . n C 1 33 C 33 433 433 C C E . n C 1 34 A 34 434 434 A A E . n C 1 35 A 35 435 435 A A E . n D 1 1 G 1 601 601 G G G . n D 1 2 G 2 602 602 G G G . n D 1 3 A 3 603 603 A A G . n D 1 4 A 4 604 604 A A G . n D 1 5 C 5 605 605 C C G . n D 1 6 C 6 606 606 C C G . n D 1 7 G 7 607 607 G G G . n D 1 8 G 8 608 608 G G G . n D 1 9 U 9 609 609 U U G . n D 1 10 G 10 610 610 G G G . n D 1 11 C 11 611 611 C C G . n D 1 12 G 12 612 612 G G G . n D 1 13 C 13 613 613 C C G . n D 1 14 A 14 614 614 A A G . n D 1 15 U 15 615 615 U U G . n D 1 16 A 16 616 616 A A G . n D 1 17 A 17 617 617 A A G . n D 1 18 C 18 618 618 C C G . n D 1 19 C 19 619 619 C C G . n D 1 20 A 20 620 620 A A G . n D 1 21 C 21 621 621 C C G . n D 1 22 C 22 622 622 C C G . n D 1 23 U 23 623 623 U U G . n D 1 24 C 24 624 624 C C G . n D 1 25 A 25 625 625 A A G . n D 1 26 G 26 626 626 G G G . n D 1 27 U 27 627 627 U U G . n D 1 28 G 28 628 628 G G G . n D 1 29 C 29 629 629 C C G . n D 1 30 G 30 630 630 G G G . n D 1 31 A 31 631 631 A A G . n D 1 32 G 32 632 632 G G G . n D 1 33 C 33 633 633 C C G . n D 1 34 A 34 634 634 A A G . n D 1 35 A 35 635 635 A A G . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 B12 1 101 101 B12 B12 A . F 3 NME 1 102 102 NME NME A . G 2 B12 1 301 301 B12 B12 C . H 3 NME 1 302 302 NME NME C . I 2 B12 1 501 501 B12 B12 E . J 3 NME 1 502 502 NME NME E . K 2 B12 1 701 701 B12 B12 G . L 3 NME 1 702 702 NME NME G . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SOLVE phasing . ? 1 CNS refinement . ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # _cell.entry_id 1DDY _cell.length_a 91.330 _cell.length_b 161.880 _cell.length_c 100.960 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1DDY _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1DDY _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 70.25 _exptl_crystal.density_Matthews 4.13 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.4 _exptl_crystal_grow.pdbx_details 'LICL, ISOPROPANOL, MGCL2, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 289K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 LICL ? ? ? 1 2 1 MGCL2 ? ? ? 1 3 1 ISOPROPANOL ? ? ? 1 4 2 ISOPROPANOL ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 1998-09-20 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.6047 1.0 2 1.6057 1.0 3 1.5842 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.1' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.1 _diffrn_source.pdbx_wavelength_list 1.6047,1.6057,1.5842 _diffrn_source.pdbx_wavelength ? # _reflns.entry_id 1DDY _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.0 _reflns.d_resolution_high 3.000 _reflns.number_obs 40156 _reflns.number_all 40156 _reflns.percent_possible_obs 92.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.0610000 _reflns.pdbx_netI_over_sigmaI 13.7 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.85 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 3.00 _reflns_shell.d_res_low 3.05 _reflns_shell.percent_possible_all 80.0 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.1950000 _reflns_shell.meanI_over_sigI_obs 4.469 _reflns_shell.pdbx_redundancy 2.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1DDY _refine.ls_number_reflns_obs 13252 _refine.ls_number_reflns_all 16492 _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF 3943390.88 _refine.ls_d_res_low 12.0 _refine.ls_d_res_high 3.0 _refine.ls_percent_reflns_obs 87.9 _refine.ls_R_factor_obs 0.2040000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2040000 _refine.ls_R_factor_R_free 0.2460000 _refine.ls_R_factor_R_free_error 0.010 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5 _refine.ls_number_reflns_R_free 663 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 26.50 _refine.aniso_B[1][1] 15.23000 _refine.aniso_B[2][2] -21.17000 _refine.aniso_B[3][3] 5.94000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;FOR CONSISTENCY, SUGARS PUCKERS WERE RESTRAINED TO THE A-RNA C3'-ENDO CONFORMATION. THIS MIGHT CONTRIBUTE TO THE HIGH RMSD FROM IDEAL VALUES OF IMPROPER ANGLES ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MAD PHASING' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_redundancy_reflns_obs ? _refine.pdbx_overall_phase_error ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1DDY _refine_analyze.Luzzati_coordinate_error_obs 0.37 _refine_analyze.Luzzati_sigma_a_obs 0.30 _refine_analyze.Luzzati_d_res_low_obs 5.0 _refine_analyze.Luzzati_coordinate_error_free 0.46 _refine_analyze.Luzzati_sigma_a_free 0.54 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 3004 _refine_hist.pdbx_number_atoms_ligand 372 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 3376 _refine_hist.d_res_high 3.0 _refine_hist.d_res_low 12.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 14.3 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 3.06 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 3.00 _refine_ls_shell.d_res_low 3.18 _refine_ls_shell.number_reflns_R_work 1886 _refine_ls_shell.R_factor_R_work 0.2830000 _refine_ls_shell.percent_reflns_obs 81.00 _refine_ls_shell.R_factor_R_free 0.3220000 _refine_ls_shell.R_factor_R_free_error 0.03 _refine_ls_shell.percent_reflns_R_free 5.9 _refine_ls_shell.number_reflns_R_free 119 _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 DNA-RNA_REP_JHC.PARAM &_1_TOP_1 'X-RAY DIFFRACTION' 2 B12.PARAM &_1_TOP_2 'X-RAY DIFFRACTION' 3 ION.PARAM &_1_TOP_3 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 1DDY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] .000000 _database_PDB_matrix.origx[1][3] .000000 _database_PDB_matrix.origx[2][1] .000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] .000000 _database_PDB_matrix.origx[3][1] .000000 _database_PDB_matrix.origx[3][2] .000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] .00000 _database_PDB_matrix.origx_vector[2] .00000 _database_PDB_matrix.origx_vector[3] .00000 # _struct.entry_id 1DDY _struct.title 'MOLECULAR RECOGNITION BY THE VITAMIN B12 RNA APTAMER' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1DDY _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RNA, TRIPLEX, VITAMIN B12, APTAMER' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 3 ? G N N 2 ? H N N 3 ? I N N 2 ? J N N 3 ? K N N 2 ? L N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1DDY _struct_ref.pdbx_db_accession 1DDY _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1DDY A 1 ? 35 ? 1DDY 1 ? 35 ? 1 35 2 1 1DDY C 1 ? 35 ? 1DDY 201 ? 235 ? 201 235 3 1 1DDY E 1 ? 35 ? 1DDY 401 ? 435 ? 401 435 4 1 1DDY G 1 ? 35 ? 1DDY 601 ? 635 ? 601 635 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 3 author_defined_assembly ? monomeric 1 4 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,E,F 2 1 B,G,H 3 1 C,I,J 4 1 D,K,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_biol.id _struct_biol.details 1 ? 2 ? 3 ? 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? E B12 . CO ? ? ? 1_555 F NME . C ? ? A B12 101 A NME 102 1_555 ? ? ? ? ? ? ? 1.849 ? ? metalc2 metalc ? ? E B12 . CO ? ? ? 1_555 F NME . N ? ? A B12 101 A NME 102 1_555 ? ? ? ? ? ? ? 2.994 ? ? metalc3 metalc ? ? G B12 . CO ? ? ? 1_555 H NME . N ? ? C B12 301 C NME 302 1_555 ? ? ? ? ? ? ? 2.992 ? ? metalc4 metalc ? ? G B12 . CO ? ? ? 1_555 H NME . C ? ? C B12 301 C NME 302 1_555 ? ? ? ? ? ? ? 1.848 ? ? metalc5 metalc ? ? I B12 . CO ? ? ? 1_555 J NME . C ? ? E B12 501 E NME 502 1_555 ? ? ? ? ? ? ? 1.854 ? ? metalc6 metalc ? ? I B12 . CO ? ? ? 1_555 J NME . N ? ? E B12 501 E NME 502 1_555 ? ? ? ? ? ? ? 3.002 ? ? metalc7 metalc ? ? K B12 . CO ? ? ? 1_555 L NME . N ? ? G B12 701 G NME 702 1_555 ? ? ? ? ? ? ? 3.001 ? ? metalc8 metalc ? ? K B12 . CO ? ? ? 1_555 L NME . C ? ? G B12 701 G NME 702 1_555 ? ? ? ? ? ? ? 1.850 ? ? hydrog1 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 22 N3 ? ? A G 7 A C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 22 O2 ? ? A G 7 A C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 22 N4 ? ? A G 7 A C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 21 N3 ? ? A G 8 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 8 N2 ? ? ? 1_555 A C 21 O2 ? ? A G 8 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 8 O6 ? ? ? 1_555 A C 21 N4 ? ? A G 8 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 9 N3 ? ? ? 1_555 A A 20 N1 ? ? A U 9 A A 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A U 9 O4 ? ? ? 1_555 A A 20 N6 ? ? A U 9 A A 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 18 N4 ? ? A G 10 A C 18 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog10 hydrog ? ? A G 10 N1 ? ? ? 1_555 A G 28 O6 ? ? A G 10 A G 28 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A G 10 N2 ? ? ? 1_555 A G 28 N7 ? ? A G 10 A G 28 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A C 11 O2 ? ? ? 1_555 A U 27 N3 ? ? A C 11 A U 27 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog13 hydrog ? ? A C 11 N3 ? ? ? 1_555 A G 30 N1 ? ? A C 11 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 11 N4 ? ? ? 1_555 A G 30 O6 ? ? A C 11 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 11 O2 ? ? ? 1_555 A G 30 N2 ? ? A C 11 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 12 N1 ? ? ? 1_555 A C 33 N3 ? ? A G 12 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 12 N2 ? ? ? 1_555 A C 33 O2 ? ? A G 12 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 12 O6 ? ? ? 1_555 A C 33 N4 ? ? A G 12 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 32 N1 ? ? A C 13 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 32 O6 ? ? A C 13 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 32 N2 ? ? A C 13 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A A 14 N1 ? ? ? 1_555 A A 31 N6 ? ? A A 14 A A 31 1_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog23 hydrog ? ? A A 14 N6 ? ? ? 1_555 A A 31 N1 ? ? A A 14 A A 31 1_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog24 hydrog ? ? A U 15 O4 ? ? ? 1_555 A C 29 N4 ? ? A U 15 A C 29 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog25 hydrog ? ? A A 17 N6 ? ? ? 1_555 A C 29 O2 ? ? A A 17 A C 29 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog26 hydrog ? ? A C 18 N3 ? ? ? 1_555 A G 28 N1 ? ? A C 18 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 18 N4 ? ? ? 1_555 A G 28 O6 ? ? A C 18 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 18 O2 ? ? ? 1_555 A G 28 N2 ? ? A C 18 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 19 N3 ? ? ? 1_555 A G 26 N1 ? ? A C 19 A G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 19 N4 ? ? ? 1_555 A G 26 O6 ? ? A C 19 A G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 19 O2 ? ? ? 1_555 A G 26 N2 ? ? A C 19 A G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A U 27 O2 ? ? ? 1_555 A G 30 N2 ? ? A U 27 A G 30 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog33 hydrog ? ? B G 7 N1 ? ? ? 1_555 B C 22 N3 ? ? C G 207 C C 222 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B G 7 N2 ? ? ? 1_555 B C 22 O2 ? ? C G 207 C C 222 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B G 7 O6 ? ? ? 1_555 B C 22 N4 ? ? C G 207 C C 222 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B G 7 N2 ? ? ? 1_555 B U 23 O4 ? ? C G 207 C U 223 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog37 hydrog ? ? B G 8 N1 ? ? ? 1_555 B C 21 N3 ? ? C G 208 C C 221 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B G 8 N2 ? ? ? 1_555 B C 21 O2 ? ? C G 208 C C 221 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B G 8 O6 ? ? ? 1_555 B C 21 N4 ? ? C G 208 C C 221 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? B U 9 N3 ? ? ? 1_555 B A 20 N1 ? ? C U 209 C A 220 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? B U 9 O4 ? ? ? 1_555 B A 20 N6 ? ? C U 209 C A 220 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? B G 10 O6 ? ? ? 1_555 B C 18 N4 ? ? C G 210 C C 218 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog43 hydrog ? ? B G 10 N1 ? ? ? 1_555 B G 28 O6 ? ? C G 210 C G 228 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog44 hydrog ? ? B G 10 N2 ? ? ? 1_555 B G 28 N7 ? ? C G 210 C G 228 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog45 hydrog ? ? B C 11 O2 ? ? ? 1_555 B U 27 N3 ? ? C C 211 C U 227 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog46 hydrog ? ? B C 11 N3 ? ? ? 1_555 B G 30 N1 ? ? C C 211 C G 230 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? B C 11 N4 ? ? ? 1_555 B G 30 O6 ? ? C C 211 C G 230 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? B C 11 O2 ? ? ? 1_555 B G 30 N2 ? ? C C 211 C G 230 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? B G 12 N1 ? ? ? 1_555 B C 33 N3 ? ? C G 212 C C 233 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? B G 12 N2 ? ? ? 1_555 B C 33 O2 ? ? C G 212 C C 233 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? B G 12 O6 ? ? ? 1_555 B C 33 N4 ? ? C G 212 C C 233 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? B C 13 N3 ? ? ? 1_555 B G 32 N1 ? ? C C 213 C G 232 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? B C 13 N4 ? ? ? 1_555 B G 32 O6 ? ? C C 213 C G 232 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? B C 13 O2 ? ? ? 1_555 B G 32 N2 ? ? C C 213 C G 232 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? B A 14 N1 ? ? ? 1_555 B A 31 N6 ? ? C A 214 C A 231 1_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog56 hydrog ? ? B A 14 N6 ? ? ? 1_555 B A 31 N1 ? ? C A 214 C A 231 1_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog57 hydrog ? ? B U 15 O4 ? ? ? 1_555 B C 29 N4 ? ? C U 215 C C 229 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog58 hydrog ? ? B A 17 N6 ? ? ? 1_555 B C 29 O2 ? ? C A 217 C C 229 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog59 hydrog ? ? B C 18 N3 ? ? ? 1_555 B G 28 N1 ? ? C C 218 C G 228 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? B C 18 N4 ? ? ? 1_555 B G 28 O6 ? ? C C 218 C G 228 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? B C 18 O2 ? ? ? 1_555 B G 28 N2 ? ? C C 218 C G 228 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? B C 19 N3 ? ? ? 1_555 B G 26 N1 ? ? C C 219 C G 226 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? B C 19 N4 ? ? ? 1_555 B G 26 O6 ? ? C C 219 C G 226 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? B C 19 O2 ? ? ? 1_555 B G 26 N2 ? ? C C 219 C G 226 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? B U 27 O2 ? ? ? 1_555 B G 30 N2 ? ? C U 227 C G 230 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog66 hydrog ? ? C G 7 N1 ? ? ? 1_555 C C 22 N3 ? ? E G 407 E C 422 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? C G 7 N2 ? ? ? 1_555 C C 22 O2 ? ? E G 407 E C 422 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? C G 7 O6 ? ? ? 1_555 C C 22 N4 ? ? E G 407 E C 422 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? C G 7 N2 ? ? ? 1_555 C U 23 O4 ? ? E G 407 E U 423 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog70 hydrog ? ? C G 8 N1 ? ? ? 1_555 C C 21 N3 ? ? E G 408 E C 421 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? C G 8 N2 ? ? ? 1_555 C C 21 O2 ? ? E G 408 E C 421 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? C G 8 O6 ? ? ? 1_555 C C 21 N4 ? ? E G 408 E C 421 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? C G 8 N2 ? ? ? 1_555 C A 25 N3 ? ? E G 408 E A 425 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog74 hydrog ? ? C U 9 N3 ? ? ? 1_555 C A 20 N1 ? ? E U 409 E A 420 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? C U 9 O4 ? ? ? 1_555 C A 20 N6 ? ? E U 409 E A 420 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? C G 10 O6 ? ? ? 1_555 C C 18 N4 ? ? E G 410 E C 418 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog77 hydrog ? ? C G 10 N1 ? ? ? 1_555 C G 28 O6 ? ? E G 410 E G 428 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog78 hydrog ? ? C G 10 N2 ? ? ? 1_555 C G 28 N7 ? ? E G 410 E G 428 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog79 hydrog ? ? C C 11 O2 ? ? ? 1_555 C U 27 N3 ? ? E C 411 E U 427 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog80 hydrog ? ? C C 11 N3 ? ? ? 1_555 C G 30 N1 ? ? E C 411 E G 430 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? C C 11 N4 ? ? ? 1_555 C G 30 O6 ? ? E C 411 E G 430 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? C C 11 O2 ? ? ? 1_555 C G 30 N2 ? ? E C 411 E G 430 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? C G 12 N1 ? ? ? 1_555 C C 33 N3 ? ? E G 412 E C 433 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? C G 12 N2 ? ? ? 1_555 C C 33 O2 ? ? E G 412 E C 433 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? C G 12 O6 ? ? ? 1_555 C C 33 N4 ? ? E G 412 E C 433 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? C C 13 N3 ? ? ? 1_555 C G 32 N1 ? ? E C 413 E G 432 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? C C 13 N4 ? ? ? 1_555 C G 32 O6 ? ? E C 413 E G 432 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? C C 13 O2 ? ? ? 1_555 C G 32 N2 ? ? E C 413 E G 432 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? C A 14 N1 ? ? ? 1_555 C A 31 N6 ? ? E A 414 E A 431 1_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog90 hydrog ? ? C A 14 N6 ? ? ? 1_555 C A 31 N1 ? ? E A 414 E A 431 1_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog91 hydrog ? ? C U 15 O4 ? ? ? 1_555 C C 29 N4 ? ? E U 415 E C 429 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog92 hydrog ? ? C A 17 N6 ? ? ? 1_555 C C 29 O2 ? ? E A 417 E C 429 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog93 hydrog ? ? C C 18 N3 ? ? ? 1_555 C G 28 N1 ? ? E C 418 E G 428 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? C C 18 N4 ? ? ? 1_555 C G 28 O6 ? ? E C 418 E G 428 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? C C 18 O2 ? ? ? 1_555 C G 28 N2 ? ? E C 418 E G 428 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? C C 19 N3 ? ? ? 1_555 C G 26 N1 ? ? E C 419 E G 426 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? C C 19 N4 ? ? ? 1_555 C G 26 O6 ? ? E C 419 E G 426 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? C C 19 O2 ? ? ? 1_555 C G 26 N2 ? ? E C 419 E G 426 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? C U 27 O2 ? ? ? 1_555 C G 30 N2 ? ? E U 427 E G 430 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog100 hydrog ? ? D G 7 N1 ? ? ? 1_555 D C 22 N3 ? ? G G 607 G C 622 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? D G 7 N2 ? ? ? 1_555 D C 22 O2 ? ? G G 607 G C 622 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? D G 7 O6 ? ? ? 1_555 D C 22 N4 ? ? G G 607 G C 622 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? D G 8 N1 ? ? ? 1_555 D C 21 N3 ? ? G G 608 G C 621 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? D G 8 N2 ? ? ? 1_555 D C 21 O2 ? ? G G 608 G C 621 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? D G 8 O6 ? ? ? 1_555 D C 21 N4 ? ? G G 608 G C 621 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? D G 8 N2 ? ? ? 1_555 D A 25 N3 ? ? G G 608 G A 625 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog107 hydrog ? ? D U 9 N3 ? ? ? 1_555 D A 20 N1 ? ? G U 609 G A 620 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? D U 9 O4 ? ? ? 1_555 D A 20 N6 ? ? G U 609 G A 620 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? D G 10 O6 ? ? ? 1_555 D C 18 N4 ? ? G G 610 G C 618 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog110 hydrog ? ? D G 10 N1 ? ? ? 1_555 D G 28 O6 ? ? G G 610 G G 628 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog111 hydrog ? ? D G 10 N2 ? ? ? 1_555 D G 28 N7 ? ? G G 610 G G 628 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog112 hydrog ? ? D C 11 O2 ? ? ? 1_555 D U 27 N3 ? ? G C 611 G U 627 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog113 hydrog ? ? D C 11 N3 ? ? ? 1_555 D G 30 N1 ? ? G C 611 G G 630 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog114 hydrog ? ? D C 11 N4 ? ? ? 1_555 D G 30 O6 ? ? G C 611 G G 630 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog115 hydrog ? ? D C 11 O2 ? ? ? 1_555 D G 30 N2 ? ? G C 611 G G 630 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog116 hydrog ? ? D G 12 N1 ? ? ? 1_555 D C 33 N3 ? ? G G 612 G C 633 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog117 hydrog ? ? D G 12 N2 ? ? ? 1_555 D C 33 O2 ? ? G G 612 G C 633 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog118 hydrog ? ? D G 12 O6 ? ? ? 1_555 D C 33 N4 ? ? G G 612 G C 633 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog119 hydrog ? ? D C 13 N3 ? ? ? 1_555 D G 32 N1 ? ? G C 613 G G 632 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog120 hydrog ? ? D C 13 N4 ? ? ? 1_555 D G 32 O6 ? ? G C 613 G G 632 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog121 hydrog ? ? D C 13 O2 ? ? ? 1_555 D G 32 N2 ? ? G C 613 G G 632 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog122 hydrog ? ? D A 14 N1 ? ? ? 1_555 D A 31 N6 ? ? G A 614 G A 631 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog123 hydrog ? ? D U 15 O4 ? ? ? 1_555 D U 27 N3 ? ? G U 615 G U 627 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog124 hydrog ? ? D U 15 O4 ? ? ? 1_555 D C 29 N4 ? ? G U 615 G C 629 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog125 hydrog ? ? D A 17 N6 ? ? ? 1_555 D C 29 O2 ? ? G A 617 G C 629 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog126 hydrog ? ? D C 18 N3 ? ? ? 1_555 D G 28 N1 ? ? G C 618 G G 628 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog127 hydrog ? ? D C 18 N4 ? ? ? 1_555 D G 28 O6 ? ? G C 618 G G 628 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog128 hydrog ? ? D C 18 O2 ? ? ? 1_555 D G 28 N2 ? ? G C 618 G G 628 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog129 hydrog ? ? D C 19 N3 ? ? ? 1_555 D G 26 N1 ? ? G C 619 G G 626 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog130 hydrog ? ? D C 19 N4 ? ? ? 1_555 D G 26 O6 ? ? G C 619 G G 626 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog131 hydrog ? ? D C 19 O2 ? ? ? 1_555 D G 26 N2 ? ? G C 619 G G 626 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog132 hydrog ? ? D U 27 O2 ? ? ? 1_555 D C 29 N4 ? ? G U 627 G C 629 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 C ? F NME . ? A NME 102 ? 1_555 CO ? E B12 . ? A B12 101 ? 1_555 N21 ? E B12 . ? A B12 101 ? 1_555 89.7 ? 2 C ? F NME . ? A NME 102 ? 1_555 CO ? E B12 . ? A B12 101 ? 1_555 N22 ? E B12 . ? A B12 101 ? 1_555 89.0 ? 3 N21 ? E B12 . ? A B12 101 ? 1_555 CO ? E B12 . ? A B12 101 ? 1_555 N22 ? E B12 . ? A B12 101 ? 1_555 90.6 ? 4 C ? F NME . ? A NME 102 ? 1_555 CO ? E B12 . ? A B12 101 ? 1_555 N23 ? E B12 . ? A B12 101 ? 1_555 90.5 ? 5 N21 ? E B12 . ? A B12 101 ? 1_555 CO ? E B12 . ? A B12 101 ? 1_555 N23 ? E B12 . ? A B12 101 ? 1_555 173.3 ? 6 N22 ? E B12 . ? A B12 101 ? 1_555 CO ? E B12 . ? A B12 101 ? 1_555 N23 ? E B12 . ? A B12 101 ? 1_555 96.1 ? 7 C ? F NME . ? A NME 102 ? 1_555 CO ? E B12 . ? A B12 101 ? 1_555 N24 ? E B12 . ? A B12 101 ? 1_555 88.2 ? 8 N21 ? E B12 . ? A B12 101 ? 1_555 CO ? E B12 . ? A B12 101 ? 1_555 N24 ? E B12 . ? A B12 101 ? 1_555 83.4 ? 9 N22 ? E B12 . ? A B12 101 ? 1_555 CO ? E B12 . ? A B12 101 ? 1_555 N24 ? E B12 . ? A B12 101 ? 1_555 173.4 ? 10 N23 ? E B12 . ? A B12 101 ? 1_555 CO ? E B12 . ? A B12 101 ? 1_555 N24 ? E B12 . ? A B12 101 ? 1_555 89.9 ? 11 C ? F NME . ? A NME 102 ? 1_555 CO ? E B12 . ? A B12 101 ? 1_555 N ? F NME . ? A NME 102 ? 1_555 1.0 ? 12 N21 ? E B12 . ? A B12 101 ? 1_555 CO ? E B12 . ? A B12 101 ? 1_555 N ? F NME . ? A NME 102 ? 1_555 88.8 ? 13 N22 ? E B12 . ? A B12 101 ? 1_555 CO ? E B12 . ? A B12 101 ? 1_555 N ? F NME . ? A NME 102 ? 1_555 88.5 ? 14 N23 ? E B12 . ? A B12 101 ? 1_555 CO ? E B12 . ? A B12 101 ? 1_555 N ? F NME . ? A NME 102 ? 1_555 91.4 ? 15 N24 ? E B12 . ? A B12 101 ? 1_555 CO ? E B12 . ? A B12 101 ? 1_555 N ? F NME . ? A NME 102 ? 1_555 88.5 ? 16 N ? H NME . ? C NME 302 ? 1_555 CO ? G B12 . ? C B12 301 ? 1_555 N21 ? G B12 . ? C B12 301 ? 1_555 89.2 ? 17 N ? H NME . ? C NME 302 ? 1_555 CO ? G B12 . ? C B12 301 ? 1_555 N22 ? G B12 . ? C B12 301 ? 1_555 86.1 ? 18 N21 ? G B12 . ? C B12 301 ? 1_555 CO ? G B12 . ? C B12 301 ? 1_555 N22 ? G B12 . ? C B12 301 ? 1_555 90.7 ? 19 N ? H NME . ? C NME 302 ? 1_555 CO ? G B12 . ? C B12 301 ? 1_555 N23 ? G B12 . ? C B12 301 ? 1_555 90.9 ? 20 N21 ? G B12 . ? C B12 301 ? 1_555 CO ? G B12 . ? C B12 301 ? 1_555 N23 ? G B12 . ? C B12 301 ? 1_555 173.5 ? 21 N22 ? G B12 . ? C B12 301 ? 1_555 CO ? G B12 . ? C B12 301 ? 1_555 N23 ? G B12 . ? C B12 301 ? 1_555 95.7 ? 22 N ? H NME . ? C NME 302 ? 1_555 CO ? G B12 . ? C B12 301 ? 1_555 N24 ? G B12 . ? C B12 301 ? 1_555 91.0 ? 23 N21 ? G B12 . ? C B12 301 ? 1_555 CO ? G B12 . ? C B12 301 ? 1_555 N24 ? G B12 . ? C B12 301 ? 1_555 84.2 ? 24 N22 ? G B12 . ? C B12 301 ? 1_555 CO ? G B12 . ? C B12 301 ? 1_555 N24 ? G B12 . ? C B12 301 ? 1_555 174.2 ? 25 N23 ? G B12 . ? C B12 301 ? 1_555 CO ? G B12 . ? C B12 301 ? 1_555 N24 ? G B12 . ? C B12 301 ? 1_555 89.3 ? 26 N ? H NME . ? C NME 302 ? 1_555 CO ? G B12 . ? C B12 301 ? 1_555 C ? H NME . ? C NME 302 ? 1_555 1.1 ? 27 N21 ? G B12 . ? C B12 301 ? 1_555 CO ? G B12 . ? C B12 301 ? 1_555 C ? H NME . ? C NME 302 ? 1_555 89.8 ? 28 N22 ? G B12 . ? C B12 301 ? 1_555 CO ? G B12 . ? C B12 301 ? 1_555 C ? H NME . ? C NME 302 ? 1_555 87.1 ? 29 N23 ? G B12 . ? C B12 301 ? 1_555 CO ? G B12 . ? C B12 301 ? 1_555 C ? H NME . ? C NME 302 ? 1_555 90.2 ? 30 N24 ? G B12 . ? C B12 301 ? 1_555 CO ? G B12 . ? C B12 301 ? 1_555 C ? H NME . ? C NME 302 ? 1_555 90.1 ? 31 C ? J NME . ? E NME 502 ? 1_555 CO ? I B12 . ? E B12 501 ? 1_555 N21 ? I B12 . ? E B12 501 ? 1_555 89.3 ? 32 C ? J NME . ? E NME 502 ? 1_555 CO ? I B12 . ? E B12 501 ? 1_555 N22 ? I B12 . ? E B12 501 ? 1_555 88.9 ? 33 N21 ? I B12 . ? E B12 501 ? 1_555 CO ? I B12 . ? E B12 501 ? 1_555 N22 ? I B12 . ? E B12 501 ? 1_555 90.8 ? 34 C ? J NME . ? E NME 502 ? 1_555 CO ? I B12 . ? E B12 501 ? 1_555 N23 ? I B12 . ? E B12 501 ? 1_555 90.1 ? 35 N21 ? I B12 . ? E B12 501 ? 1_555 CO ? I B12 . ? E B12 501 ? 1_555 N23 ? I B12 . ? E B12 501 ? 1_555 172.6 ? 36 N22 ? I B12 . ? E B12 501 ? 1_555 CO ? I B12 . ? E B12 501 ? 1_555 N23 ? I B12 . ? E B12 501 ? 1_555 96.5 ? 37 C ? J NME . ? E NME 502 ? 1_555 CO ? I B12 . ? E B12 501 ? 1_555 N24 ? I B12 . ? E B12 501 ? 1_555 88.4 ? 38 N21 ? I B12 . ? E B12 501 ? 1_555 CO ? I B12 . ? E B12 501 ? 1_555 N24 ? I B12 . ? E B12 501 ? 1_555 84.1 ? 39 N22 ? I B12 . ? E B12 501 ? 1_555 CO ? I B12 . ? E B12 501 ? 1_555 N24 ? I B12 . ? E B12 501 ? 1_555 174.3 ? 40 N23 ? I B12 . ? E B12 501 ? 1_555 CO ? I B12 . ? E B12 501 ? 1_555 N24 ? I B12 . ? E B12 501 ? 1_555 88.5 ? 41 C ? J NME . ? E NME 502 ? 1_555 CO ? I B12 . ? E B12 501 ? 1_555 N ? J NME . ? E NME 502 ? 1_555 1.0 ? 42 N21 ? I B12 . ? E B12 501 ? 1_555 CO ? I B12 . ? E B12 501 ? 1_555 N ? J NME . ? E NME 502 ? 1_555 88.4 ? 43 N22 ? I B12 . ? E B12 501 ? 1_555 CO ? I B12 . ? E B12 501 ? 1_555 N ? J NME . ? E NME 502 ? 1_555 88.6 ? 44 N23 ? I B12 . ? E B12 501 ? 1_555 CO ? I B12 . ? E B12 501 ? 1_555 N ? J NME . ? E NME 502 ? 1_555 91.1 ? 45 N24 ? I B12 . ? E B12 501 ? 1_555 CO ? I B12 . ? E B12 501 ? 1_555 N ? J NME . ? E NME 502 ? 1_555 88.6 ? 46 N ? L NME . ? G NME 702 ? 1_555 CO ? K B12 . ? G B12 701 ? 1_555 N21 ? K B12 . ? G B12 701 ? 1_555 90.7 ? 47 N ? L NME . ? G NME 702 ? 1_555 CO ? K B12 . ? G B12 701 ? 1_555 N22 ? K B12 . ? G B12 701 ? 1_555 87.7 ? 48 N21 ? K B12 . ? G B12 701 ? 1_555 CO ? K B12 . ? G B12 701 ? 1_555 N22 ? K B12 . ? G B12 701 ? 1_555 90.9 ? 49 N ? L NME . ? G NME 702 ? 1_555 CO ? K B12 . ? G B12 701 ? 1_555 N23 ? K B12 . ? G B12 701 ? 1_555 89.7 ? 50 N21 ? K B12 . ? G B12 701 ? 1_555 CO ? K B12 . ? G B12 701 ? 1_555 N23 ? K B12 . ? G B12 701 ? 1_555 172.9 ? 51 N22 ? K B12 . ? G B12 701 ? 1_555 CO ? K B12 . ? G B12 701 ? 1_555 N23 ? K B12 . ? G B12 701 ? 1_555 96.2 ? 52 N ? L NME . ? G NME 702 ? 1_555 CO ? K B12 . ? G B12 701 ? 1_555 N24 ? K B12 . ? G B12 701 ? 1_555 90.1 ? 53 N21 ? K B12 . ? G B12 701 ? 1_555 CO ? K B12 . ? G B12 701 ? 1_555 N24 ? K B12 . ? G B12 701 ? 1_555 84.1 ? 54 N22 ? K B12 . ? G B12 701 ? 1_555 CO ? K B12 . ? G B12 701 ? 1_555 N24 ? K B12 . ? G B12 701 ? 1_555 174.5 ? 55 N23 ? K B12 . ? G B12 701 ? 1_555 CO ? K B12 . ? G B12 701 ? 1_555 N24 ? K B12 . ? G B12 701 ? 1_555 88.9 ? 56 N ? L NME . ? G NME 702 ? 1_555 CO ? K B12 . ? G B12 701 ? 1_555 C ? L NME . ? G NME 702 ? 1_555 0.6 ? 57 N21 ? K B12 . ? G B12 701 ? 1_555 CO ? K B12 . ? G B12 701 ? 1_555 C ? L NME . ? G NME 702 ? 1_555 90.7 ? 58 N22 ? K B12 . ? G B12 701 ? 1_555 CO ? K B12 . ? G B12 701 ? 1_555 C ? L NME . ? G NME 702 ? 1_555 88.3 ? 59 N23 ? K B12 . ? G B12 701 ? 1_555 CO ? K B12 . ? G B12 701 ? 1_555 C ? L NME . ? G NME 702 ? 1_555 89.6 ? 60 N24 ? K B12 . ? G B12 701 ? 1_555 CO ? K B12 . ? G B12 701 ? 1_555 C ? L NME . ? G NME 702 ? 1_555 89.5 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A B12 101 ? 6 'BINDING SITE FOR RESIDUE B12 A 101' AC2 Software C B12 301 ? 7 'BINDING SITE FOR RESIDUE B12 C 301' AC3 Software E B12 501 ? 8 'BINDING SITE FOR RESIDUE B12 E 501' AC4 Software G B12 701 ? 8 'BINDING SITE FOR RESIDUE B12 G 701' AC5 Software A NME 102 ? 3 'BINDING SITE FOR RESIDUE NME A 102' AC6 Software C NME 302 ? 3 'BINDING SITE FOR RESIDUE NME C 302' AC7 Software E NME 502 ? 4 'BINDING SITE FOR RESIDUE NME E 502' AC8 Software G NME 702 ? 3 'BINDING SITE FOR RESIDUE NME G 702' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 A A 14 ? A A 14 . ? 1_555 ? 2 AC1 6 A A 16 ? A A 16 . ? 1_555 ? 3 AC1 6 C A 29 ? C A 29 . ? 1_555 ? 4 AC1 6 G A 30 ? G A 30 . ? 1_555 ? 5 AC1 6 A A 31 ? A A 31 . ? 1_555 ? 6 AC1 6 NME F . ? NME A 102 . ? 1_555 ? 7 AC2 7 A B 14 ? A C 214 . ? 1_555 ? 8 AC2 7 A B 16 ? A C 216 . ? 1_555 ? 9 AC2 7 C B 29 ? C C 229 . ? 1_555 ? 10 AC2 7 G B 30 ? G C 230 . ? 1_555 ? 11 AC2 7 A B 31 ? A C 231 . ? 1_555 ? 12 AC2 7 NME H . ? NME C 302 . ? 1_555 ? 13 AC2 7 A C 16 ? A E 416 . ? 1_555 ? 14 AC3 8 A B 17 ? A C 217 . ? 1_555 ? 15 AC3 8 A C 14 ? A E 414 . ? 1_555 ? 16 AC3 8 A C 16 ? A E 416 . ? 1_555 ? 17 AC3 8 C C 29 ? C E 429 . ? 1_555 ? 18 AC3 8 G C 30 ? G E 430 . ? 1_555 ? 19 AC3 8 A C 31 ? A E 431 . ? 1_555 ? 20 AC3 8 NME J . ? NME E 502 . ? 1_555 ? 21 AC3 8 B12 K . ? B12 G 701 . ? 1_555 ? 22 AC4 8 B12 I . ? B12 E 501 . ? 1_555 ? 23 AC4 8 A D 14 ? A G 614 . ? 1_555 ? 24 AC4 8 A D 16 ? A G 616 . ? 1_555 ? 25 AC4 8 A D 17 ? A G 617 . ? 1_555 ? 26 AC4 8 C D 29 ? C G 629 . ? 1_555 ? 27 AC4 8 G D 30 ? G G 630 . ? 1_555 ? 28 AC4 8 A D 31 ? A G 631 . ? 1_555 ? 29 AC4 8 NME L . ? NME G 702 . ? 1_555 ? 30 AC5 3 C A 11 ? C A 11 . ? 1_555 ? 31 AC5 3 A A 16 ? A A 16 . ? 1_555 ? 32 AC5 3 B12 E . ? B12 A 101 . ? 1_555 ? 33 AC6 3 C B 11 ? C C 211 . ? 1_555 ? 34 AC6 3 A B 16 ? A C 216 . ? 1_555 ? 35 AC6 3 B12 G . ? B12 C 301 . ? 1_555 ? 36 AC7 4 C C 11 ? C E 411 . ? 1_555 ? 37 AC7 4 A C 16 ? A E 416 . ? 1_555 ? 38 AC7 4 G C 30 ? G E 430 . ? 1_555 ? 39 AC7 4 B12 I . ? B12 E 501 . ? 1_555 ? 40 AC8 3 C D 11 ? C G 611 . ? 1_555 ? 41 AC8 3 A D 16 ? A G 616 . ? 1_555 ? 42 AC8 3 B12 K . ? B12 G 701 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P A G 1 ? ? OP3 A G 1 ? ? 1.524 1.607 -0.083 0.012 N 2 1 P C G 201 ? ? OP3 C G 201 ? ? 1.524 1.607 -0.083 0.012 N 3 1 P E G 401 ? ? OP3 E G 401 ? ? 1.523 1.607 -0.084 0.012 N 4 1 P G G 601 ? ? OP3 G G 601 ? ? 1.523 1.607 -0.084 0.012 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C2'" A G 12 ? ? "C3'" A G 12 ? ? "O3'" A G 12 ? ? 124.21 113.70 10.51 1.60 N 2 1 "C2'" A U 23 ? ? "C3'" A U 23 ? ? "O3'" A U 23 ? ? 130.29 113.70 16.59 1.60 N 3 1 "C2'" C G 212 ? ? "C3'" C G 212 ? ? "O3'" C G 212 ? ? 127.20 113.70 13.50 1.60 N 4 1 "C2'" E G 412 ? ? "C3'" E G 412 ? ? "O3'" E G 412 ? ? 125.77 113.70 12.07 1.60 N 5 1 "C2'" G G 612 ? ? "C3'" G G 612 ? ? "O3'" G G 612 ? ? 125.59 113.70 11.89 1.60 N # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 "C3'" ? A G 12 ? 'WRONG HAND' . 2 1 "C3'" ? A U 23 ? PLANAR . 3 1 "C3'" ? C G 212 ? 'WRONG HAND' . 4 1 "C3'" ? E G 412 ? 'WRONG HAND' . 5 1 "C3'" ? G G 612 ? 'WRONG HAND' . 6 1 "C3'" ? G U 623 ? 'WRONG HAND' . # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 A C 214 ? ? 0.062 'SIDE CHAIN' 2 1 G C 226 ? ? 0.054 'SIDE CHAIN' 3 1 A E 414 ? ? 0.054 'SIDE CHAIN' 4 1 A G 614 ? ? 0.062 'SIDE CHAIN' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 B12 CO CO N N 38 B12 N21 N N N 39 B12 N22 N N N 40 B12 N23 N N N 41 B12 N24 N N N 42 B12 C1 C N R 43 B12 C20 C N N 44 B12 C2 C N S 45 B12 C25 C N N 46 B12 C26 C N N 47 B12 C27 C N N 48 B12 O28 O N N 49 B12 N29 N N N 50 B12 C3 C N S 51 B12 C30 C N N 52 B12 C31 C N N 53 B12 C32 C N N 54 B12 O34 O N N 55 B12 N33 N N N 56 B12 C4 C N N 57 B12 C5 C N N 58 B12 C35 C N N 59 B12 C6 C N N 60 B12 C7 C N S 61 B12 C36 C N N 62 B12 C37 C N N 63 B12 C38 C N N 64 B12 O39 O N N 65 B12 N40 N N N 66 B12 C8 C N S 67 B12 C41 C N N 68 B12 C42 C N N 69 B12 C43 C N N 70 B12 O44 O N N 71 B12 N45 N N N 72 B12 C9 C N N 73 B12 C10 C N N 74 B12 C11 C N N 75 B12 C12 C N N 76 B12 C46 C N N 77 B12 C47 C N N 78 B12 C13 C N S 79 B12 C48 C N N 80 B12 C49 C N N 81 B12 C50 C N N 82 B12 O51 O N N 83 B12 N52 N N N 84 B12 C14 C N N 85 B12 C15 C N N 86 B12 C53 C N N 87 B12 C16 C N N 88 B12 C17 C N R 89 B12 C54 C N N 90 B12 C55 C N N 91 B12 C56 C N N 92 B12 C57 C N N 93 B12 O58 O N N 94 B12 N59 N N N 95 B12 C18 C N R 96 B12 C60 C N N 97 B12 C61 C N N 98 B12 O63 O N N 99 B12 N62 N N N 100 B12 C19 C N R 101 B12 C1P C N N 102 B12 C2P C N R 103 B12 C3P C N N 104 B12 O3 O N N 105 B12 O4 O N N 106 B12 O5 O N N 107 B12 P P N N 108 B12 O2 O N N 109 B12 C3R C N S 110 B12 C2R C N R 111 B12 O7R O N N 112 B12 C1R C N S 113 B12 O6R O N N 114 B12 C4R C N R 115 B12 C5R C N N 116 B12 O8R O N N 117 B12 N1B N Y N 118 B12 C8B C Y N 119 B12 C2B C Y N 120 B12 N3B N Y N 121 B12 C9B C Y N 122 B12 C4B C Y N 123 B12 C5B C Y N 124 B12 C5M C N N 125 B12 C6B C Y N 126 B12 C6M C N N 127 B12 C7B C Y N 128 B12 H201 H N N 129 B12 H202 H N N 130 B12 H203 H N N 131 B12 H251 H N N 132 B12 H252 H N N 133 B12 H253 H N N 134 B12 H261 H N N 135 B12 H262 H N N 136 B12 H291 H N N 137 B12 H292 H N N 138 B12 H3 H N N 139 B12 H301 H N N 140 B12 H302 H N N 141 B12 H311 H N N 142 B12 H312 H N N 143 B12 H331 H N N 144 B12 H332 H N N 145 B12 H351 H N N 146 B12 H352 H N N 147 B12 H353 H N N 148 B12 H361 H N N 149 B12 H362 H N N 150 B12 H363 H N N 151 B12 H371 H N N 152 B12 H372 H N N 153 B12 H401 H N N 154 B12 H402 H N N 155 B12 H8 H N N 156 B12 H411 H N N 157 B12 H412 H N N 158 B12 H421 H N N 159 B12 H422 H N N 160 B12 H451 H N N 161 B12 H452 H N N 162 B12 H10 H N N 163 B12 H461 H N N 164 B12 H462 H N N 165 B12 H463 H N N 166 B12 H471 H N N 167 B12 H472 H N N 168 B12 H473 H N N 169 B12 H13 H N N 170 B12 H481 H N N 171 B12 H482 H N N 172 B12 H491 H N N 173 B12 H492 H N N 174 B12 H521 H N N 175 B12 H522 H N N 176 B12 H531 H N N 177 B12 H532 H N N 178 B12 H533 H N N 179 B12 H541 H N N 180 B12 H542 H N N 181 B12 H543 H N N 182 B12 H551 H N N 183 B12 H552 H N N 184 B12 H561 H N N 185 B12 H562 H N N 186 B12 H59 H N N 187 B12 H18 H N N 188 B12 H601 H N N 189 B12 H602 H N N 190 B12 H621 H N N 191 B12 H622 H N N 192 B12 H1P1 H N N 193 B12 H1P2 H N N 194 B12 H2P H N N 195 B12 H3P1 H N N 196 B12 H3P2 H N N 197 B12 H3P3 H N N 198 B12 HOP5 H N N 199 B12 H3R H N N 200 B12 H2R H N N 201 B12 HOR7 H N N 202 B12 H1R H N N 203 B12 H4R H N N 204 B12 H5R1 H N N 205 B12 H5R2 H N N 206 B12 HOR8 H N N 207 B12 H2B H N N 208 B12 H4B H N N 209 B12 HM51 H N N 210 B12 HM52 H N N 211 B12 HM53 H N N 212 B12 HM61 H N N 213 B12 HM62 H N N 214 B12 HM63 H N N 215 B12 H7B H N N 216 B12 H91 H N N 217 C OP3 O N N 218 C P P N N 219 C OP1 O N N 220 C OP2 O N N 221 C "O5'" O N N 222 C "C5'" C N N 223 C "C4'" C N R 224 C "O4'" O N N 225 C "C3'" C N S 226 C "O3'" O N N 227 C "C2'" C N R 228 C "O2'" O N N 229 C "C1'" C N R 230 C N1 N N N 231 C C2 C N N 232 C O2 O N N 233 C N3 N N N 234 C C4 C N N 235 C N4 N N N 236 C C5 C N N 237 C C6 C N N 238 C HOP3 H N N 239 C HOP2 H N N 240 C "H5'" H N N 241 C "H5''" H N N 242 C "H4'" H N N 243 C "H3'" H N N 244 C "HO3'" H N N 245 C "H2'" H N N 246 C "HO2'" H N N 247 C "H1'" H N N 248 C H41 H N N 249 C H42 H N N 250 C H5 H N N 251 C H6 H N N 252 G OP3 O N N 253 G P P N N 254 G OP1 O N N 255 G OP2 O N N 256 G "O5'" O N N 257 G "C5'" C N N 258 G "C4'" C N R 259 G "O4'" O N N 260 G "C3'" C N S 261 G "O3'" O N N 262 G "C2'" C N R 263 G "O2'" O N N 264 G "C1'" C N R 265 G N9 N Y N 266 G C8 C Y N 267 G N7 N Y N 268 G C5 C Y N 269 G C6 C N N 270 G O6 O N N 271 G N1 N N N 272 G C2 C N N 273 G N2 N N N 274 G N3 N N N 275 G C4 C Y N 276 G HOP3 H N N 277 G HOP2 H N N 278 G "H5'" H N N 279 G "H5''" H N N 280 G "H4'" H N N 281 G "H3'" H N N 282 G "HO3'" H N N 283 G "H2'" H N N 284 G "HO2'" H N N 285 G "H1'" H N N 286 G H8 H N N 287 G H1 H N N 288 G H21 H N N 289 G H22 H N N 290 NME N N N N 291 NME C C N N 292 NME HN1 H N N 293 NME HN2 H N N 294 NME H1 H N N 295 NME H2 H N N 296 NME H3 H N N 297 U OP3 O N N 298 U P P N N 299 U OP1 O N N 300 U OP2 O N N 301 U "O5'" O N N 302 U "C5'" C N N 303 U "C4'" C N R 304 U "O4'" O N N 305 U "C3'" C N S 306 U "O3'" O N N 307 U "C2'" C N R 308 U "O2'" O N N 309 U "C1'" C N R 310 U N1 N N N 311 U C2 C N N 312 U O2 O N N 313 U N3 N N N 314 U C4 C N N 315 U O4 O N N 316 U C5 C N N 317 U C6 C N N 318 U HOP3 H N N 319 U HOP2 H N N 320 U "H5'" H N N 321 U "H5''" H N N 322 U "H4'" H N N 323 U "H3'" H N N 324 U "HO3'" H N N 325 U "H2'" H N N 326 U "HO2'" H N N 327 U "H1'" H N N 328 U H3 H N N 329 U H5 H N N 330 U H6 H N N 331 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 B12 N21 CO sing N N 40 B12 N21 C1 sing N N 41 B12 N21 C4 doub N N 42 B12 N22 CO sing N N 43 B12 N22 C6 sing N N 44 B12 N22 C9 doub N N 45 B12 N23 CO sing N N 46 B12 N23 C11 sing N N 47 B12 N23 C14 sing N N 48 B12 N24 CO sing N N 49 B12 N24 C16 doub N N 50 B12 N24 C19 sing N N 51 B12 C1 C20 sing N N 52 B12 C1 C2 sing N N 53 B12 C1 C19 sing N N 54 B12 C20 H201 sing N N 55 B12 C20 H202 sing N N 56 B12 C20 H203 sing N N 57 B12 C2 C25 sing N N 58 B12 C2 C26 sing N N 59 B12 C2 C3 sing N N 60 B12 C25 H251 sing N N 61 B12 C25 H252 sing N N 62 B12 C25 H253 sing N N 63 B12 C26 C27 sing N N 64 B12 C26 H261 sing N N 65 B12 C26 H262 sing N N 66 B12 C27 O28 doub N N 67 B12 C27 N29 sing N N 68 B12 N29 H291 sing N N 69 B12 N29 H292 sing N N 70 B12 C3 C30 sing N N 71 B12 C3 C4 sing N N 72 B12 C3 H3 sing N N 73 B12 C30 C31 sing N N 74 B12 C30 H301 sing N N 75 B12 C30 H302 sing N N 76 B12 C31 C32 sing N N 77 B12 C31 H311 sing N N 78 B12 C31 H312 sing N N 79 B12 C32 O34 doub N N 80 B12 C32 N33 sing N N 81 B12 N33 H331 sing N N 82 B12 N33 H332 sing N N 83 B12 C4 C5 sing N N 84 B12 C5 C35 sing N N 85 B12 C5 C6 doub N N 86 B12 C35 H351 sing N N 87 B12 C35 H352 sing N N 88 B12 C35 H353 sing N N 89 B12 C6 C7 sing N N 90 B12 C7 C36 sing N N 91 B12 C7 C37 sing N N 92 B12 C7 C8 sing N N 93 B12 C36 H361 sing N N 94 B12 C36 H362 sing N N 95 B12 C36 H363 sing N N 96 B12 C37 C38 sing N N 97 B12 C37 H371 sing N N 98 B12 C37 H372 sing N N 99 B12 C38 O39 doub N N 100 B12 C38 N40 sing N N 101 B12 N40 H401 sing N N 102 B12 N40 H402 sing N N 103 B12 C8 C41 sing N N 104 B12 C8 C9 sing N N 105 B12 C8 H8 sing N N 106 B12 C41 C42 sing N N 107 B12 C41 H411 sing N N 108 B12 C41 H412 sing N N 109 B12 C42 C43 sing N N 110 B12 C42 H421 sing N N 111 B12 C42 H422 sing N N 112 B12 C43 O44 doub N N 113 B12 C43 N45 sing N N 114 B12 N45 H451 sing N N 115 B12 N45 H452 sing N N 116 B12 C9 C10 sing N N 117 B12 C10 C11 doub N N 118 B12 C10 H10 sing N N 119 B12 C11 C12 sing N N 120 B12 C12 C46 sing N N 121 B12 C12 C47 sing N N 122 B12 C12 C13 sing N N 123 B12 C46 H461 sing N N 124 B12 C46 H462 sing N N 125 B12 C46 H463 sing N N 126 B12 C47 H471 sing N N 127 B12 C47 H472 sing N N 128 B12 C47 H473 sing N N 129 B12 C13 C48 sing N N 130 B12 C13 C14 sing N N 131 B12 C13 H13 sing N N 132 B12 C48 C49 sing N N 133 B12 C48 H481 sing N N 134 B12 C48 H482 sing N N 135 B12 C49 C50 sing N N 136 B12 C49 H491 sing N N 137 B12 C49 H492 sing N N 138 B12 C50 O51 doub N N 139 B12 C50 N52 sing N N 140 B12 N52 H521 sing N N 141 B12 N52 H522 sing N N 142 B12 C14 C15 doub N N 143 B12 C15 C53 sing N N 144 B12 C15 C16 sing N N 145 B12 C53 H531 sing N N 146 B12 C53 H532 sing N N 147 B12 C53 H533 sing N N 148 B12 C16 C17 sing N N 149 B12 C17 C54 sing N N 150 B12 C17 C55 sing N N 151 B12 C17 C18 sing N N 152 B12 C54 H541 sing N N 153 B12 C54 H542 sing N N 154 B12 C54 H543 sing N N 155 B12 C55 C56 sing N N 156 B12 C55 H551 sing N N 157 B12 C55 H552 sing N N 158 B12 C56 C57 sing N N 159 B12 C56 H561 sing N N 160 B12 C56 H562 sing N N 161 B12 C57 O58 doub N N 162 B12 C57 N59 sing N N 163 B12 N59 C1P sing N N 164 B12 N59 H59 sing N N 165 B12 C18 C60 sing N N 166 B12 C18 C19 sing N N 167 B12 C18 H18 sing N N 168 B12 C60 C61 sing N N 169 B12 C60 H601 sing N N 170 B12 C60 H602 sing N N 171 B12 C61 O63 doub N N 172 B12 C61 N62 sing N N 173 B12 N62 H621 sing N N 174 B12 N62 H622 sing N N 175 B12 C19 H91 sing N N 176 B12 C1P C2P sing N N 177 B12 C1P H1P1 sing N N 178 B12 C1P H1P2 sing N N 179 B12 C2P C3P sing N N 180 B12 C2P O3 sing N N 181 B12 C2P H2P sing N N 182 B12 C3P H3P1 sing N N 183 B12 C3P H3P2 sing N N 184 B12 C3P H3P3 sing N N 185 B12 O3 P sing N N 186 B12 O4 P doub N N 187 B12 O5 P sing N N 188 B12 O5 HOP5 sing N N 189 B12 P O2 sing N N 190 B12 O2 C3R sing N N 191 B12 C3R C2R sing N N 192 B12 C3R C4R sing N N 193 B12 C3R H3R sing N N 194 B12 C2R O7R sing N N 195 B12 C2R C1R sing N N 196 B12 C2R H2R sing N N 197 B12 O7R HOR7 sing N N 198 B12 C1R O6R sing N N 199 B12 C1R N1B sing N N 200 B12 C1R H1R sing N N 201 B12 O6R C4R sing N N 202 B12 C4R C5R sing N N 203 B12 C4R H4R sing N N 204 B12 C5R O8R sing N N 205 B12 C5R H5R1 sing N N 206 B12 C5R H5R2 sing N N 207 B12 O8R HOR8 sing N N 208 B12 N1B C8B sing Y N 209 B12 N1B C2B sing Y N 210 B12 C8B C9B doub Y N 211 B12 C8B C7B sing Y N 212 B12 C2B N3B doub Y N 213 B12 C2B H2B sing N N 214 B12 N3B C9B sing Y N 215 B12 C9B C4B sing Y N 216 B12 C4B C5B doub Y N 217 B12 C4B H4B sing N N 218 B12 C5B C5M sing N N 219 B12 C5B C6B sing Y N 220 B12 C5M HM51 sing N N 221 B12 C5M HM52 sing N N 222 B12 C5M HM53 sing N N 223 B12 C6B C6M sing N N 224 B12 C6B C7B doub Y N 225 B12 C6M HM61 sing N N 226 B12 C6M HM62 sing N N 227 B12 C6M HM63 sing N N 228 B12 C7B H7B sing N N 229 C OP3 P sing N N 230 C OP3 HOP3 sing N N 231 C P OP1 doub N N 232 C P OP2 sing N N 233 C P "O5'" sing N N 234 C OP2 HOP2 sing N N 235 C "O5'" "C5'" sing N N 236 C "C5'" "C4'" sing N N 237 C "C5'" "H5'" sing N N 238 C "C5'" "H5''" sing N N 239 C "C4'" "O4'" sing N N 240 C "C4'" "C3'" sing N N 241 C "C4'" "H4'" sing N N 242 C "O4'" "C1'" sing N N 243 C "C3'" "O3'" sing N N 244 C "C3'" "C2'" sing N N 245 C "C3'" "H3'" sing N N 246 C "O3'" "HO3'" sing N N 247 C "C2'" "O2'" sing N N 248 C "C2'" "C1'" sing N N 249 C "C2'" "H2'" sing N N 250 C "O2'" "HO2'" sing N N 251 C "C1'" N1 sing N N 252 C "C1'" "H1'" sing N N 253 C N1 C2 sing N N 254 C N1 C6 sing N N 255 C C2 O2 doub N N 256 C C2 N3 sing N N 257 C N3 C4 doub N N 258 C C4 N4 sing N N 259 C C4 C5 sing N N 260 C N4 H41 sing N N 261 C N4 H42 sing N N 262 C C5 C6 doub N N 263 C C5 H5 sing N N 264 C C6 H6 sing N N 265 G OP3 P sing N N 266 G OP3 HOP3 sing N N 267 G P OP1 doub N N 268 G P OP2 sing N N 269 G P "O5'" sing N N 270 G OP2 HOP2 sing N N 271 G "O5'" "C5'" sing N N 272 G "C5'" "C4'" sing N N 273 G "C5'" "H5'" sing N N 274 G "C5'" "H5''" sing N N 275 G "C4'" "O4'" sing N N 276 G "C4'" "C3'" sing N N 277 G "C4'" "H4'" sing N N 278 G "O4'" "C1'" sing N N 279 G "C3'" "O3'" sing N N 280 G "C3'" "C2'" sing N N 281 G "C3'" "H3'" sing N N 282 G "O3'" "HO3'" sing N N 283 G "C2'" "O2'" sing N N 284 G "C2'" "C1'" sing N N 285 G "C2'" "H2'" sing N N 286 G "O2'" "HO2'" sing N N 287 G "C1'" N9 sing N N 288 G "C1'" "H1'" sing N N 289 G N9 C8 sing Y N 290 G N9 C4 sing Y N 291 G C8 N7 doub Y N 292 G C8 H8 sing N N 293 G N7 C5 sing Y N 294 G C5 C6 sing N N 295 G C5 C4 doub Y N 296 G C6 O6 doub N N 297 G C6 N1 sing N N 298 G N1 C2 sing N N 299 G N1 H1 sing N N 300 G C2 N2 sing N N 301 G C2 N3 doub N N 302 G N2 H21 sing N N 303 G N2 H22 sing N N 304 G N3 C4 sing N N 305 NME N C sing N N 306 NME N HN1 sing N N 307 NME N HN2 sing N N 308 NME C H1 sing N N 309 NME C H2 sing N N 310 NME C H3 sing N N 311 U OP3 P sing N N 312 U OP3 HOP3 sing N N 313 U P OP1 doub N N 314 U P OP2 sing N N 315 U P "O5'" sing N N 316 U OP2 HOP2 sing N N 317 U "O5'" "C5'" sing N N 318 U "C5'" "C4'" sing N N 319 U "C5'" "H5'" sing N N 320 U "C5'" "H5''" sing N N 321 U "C4'" "O4'" sing N N 322 U "C4'" "C3'" sing N N 323 U "C4'" "H4'" sing N N 324 U "O4'" "C1'" sing N N 325 U "C3'" "O3'" sing N N 326 U "C3'" "C2'" sing N N 327 U "C3'" "H3'" sing N N 328 U "O3'" "HO3'" sing N N 329 U "C2'" "O2'" sing N N 330 U "C2'" "C1'" sing N N 331 U "C2'" "H2'" sing N N 332 U "O2'" "HO2'" sing N N 333 U "C1'" N1 sing N N 334 U "C1'" "H1'" sing N N 335 U N1 C2 sing N N 336 U N1 C6 sing N N 337 U C2 O2 doub N N 338 U C2 N3 sing N N 339 U N3 C4 sing N N 340 U N3 H3 sing N N 341 U C4 O4 doub N N 342 U C4 C5 sing N N 343 U C5 C6 doub N N 344 U C5 H5 sing N N 345 U C6 H6 sing N N 346 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1DDY 'double helix' 1DDY 'a-form double helix' 1DDY 'bulge loop' 1DDY 'mismatched base pair' 1DDY 'internal loop' 1DDY 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 7 1_555 A C 22 1_555 0.719 -0.373 0.127 3.876 -14.417 -11.651 1 A_G7:C22_A A 7 ? A 22 ? 19 1 1 A G 8 1_555 A C 21 1_555 0.355 -0.267 0.182 -5.324 -27.829 4.765 2 A_G8:C21_A A 8 ? A 21 ? 19 1 1 A U 9 1_555 A A 20 1_555 -0.065 -0.354 -0.129 -4.090 -23.428 -10.246 3 A_U9:A20_A A 9 ? A 20 ? 20 1 1 A G 26 1_555 A C 19 1_555 -0.180 -0.273 -0.011 -3.776 -13.121 -1.338 4 A_G26:C19_A A 26 ? A 19 ? 19 1 1 A G 28 1_555 A C 18 1_555 -0.275 -0.165 0.492 -11.761 -13.535 4.320 5 A_G28:C18_A A 28 ? A 18 ? 19 1 1 A C 29 1_555 A U 15 1_555 -0.440 0.490 -0.600 -4.885 -11.074 -42.473 6 A_C29:U15_A A 29 ? A 15 ? ? ? 1 A G 30 1_555 A C 11 1_555 -0.996 -0.252 0.174 -4.005 -27.262 1.224 7 A_G30:C11_A A 30 ? A 11 ? 19 1 1 A A 31 1_555 A A 14 1_555 -1.307 -1.865 -0.668 21.578 -1.582 164.964 8 A_A31:A14_A A 31 ? A 14 ? 1 2 1 A G 32 1_555 A C 13 1_555 -0.253 -0.355 -0.056 -5.799 -14.537 -2.585 9 A_G32:C13_A A 32 ? A 13 ? 19 1 1 A C 33 1_555 A G 12 1_555 0.429 -0.358 0.144 -1.758 -19.263 2.738 10 A_C33:G12_A A 33 ? A 12 ? 19 1 1 B G 7 1_555 B C 22 1_555 -0.108 -0.391 0.435 -2.945 -2.771 -3.336 11 C_G207:C222_C C 207 ? C 222 ? 19 1 1 B G 8 1_555 B C 21 1_555 -0.033 -0.115 -0.590 -19.051 -21.281 8.814 12 C_G208:C221_C C 208 ? C 221 ? 19 1 1 B U 9 1_555 B A 20 1_555 0.299 0.060 0.131 -18.182 -11.121 -3.883 13 C_U209:A220_C C 209 ? C 220 ? 20 1 1 B G 26 1_555 B C 19 1_555 -0.123 0.071 -0.147 -15.493 -12.410 0.862 14 C_G226:C219_C C 226 ? C 219 ? 19 1 1 B G 28 1_555 B C 18 1_555 0.361 -0.111 -0.233 -25.531 -11.604 -3.769 15 C_G228:C218_C C 228 ? C 218 ? 19 1 1 B C 29 1_555 B U 15 1_555 -0.398 0.616 -0.210 2.615 -3.268 -45.251 16 C_C229:U215_C C 229 ? C 215 ? ? ? 1 B G 30 1_555 B C 11 1_555 0.389 0.025 1.042 3.963 -20.996 -3.520 17 C_G230:C211_C C 230 ? C 211 ? 19 1 1 B A 31 1_555 B A 14 1_555 -1.339 -1.860 -0.520 13.248 -7.994 170.214 18 C_A231:A214_C C 231 ? C 214 ? 1 2 1 B G 32 1_555 B C 13 1_555 -0.365 -0.408 -0.082 -11.011 -12.885 0.628 19 C_G232:C213_C C 232 ? C 213 ? 19 1 1 B C 33 1_555 B G 12 1_555 0.779 -0.373 0.288 -4.071 -12.770 3.480 20 C_C233:G212_C C 233 ? C 212 ? 19 1 1 C G 7 1_555 C C 22 1_555 0.212 -0.421 0.094 -4.977 -9.197 -0.137 21 E_G407:C422_E E 407 ? E 422 ? 19 1 1 C G 8 1_555 C C 21 1_555 0.130 -0.050 -0.311 -21.760 -27.030 7.502 22 E_G408:C421_E E 408 ? E 421 ? 19 1 1 C U 9 1_555 C A 20 1_555 0.099 0.020 0.111 -10.352 -15.818 0.303 23 E_U409:A420_E E 409 ? E 420 ? 20 1 1 C G 26 1_555 C C 19 1_555 0.298 0.078 -0.647 -21.927 -20.938 0.648 24 E_G426:C419_E E 426 ? E 419 ? 19 1 1 C G 28 1_555 C C 18 1_555 -0.705 -0.083 -0.275 -23.464 -11.746 7.492 25 E_G428:C418_E E 428 ? E 418 ? 19 1 1 C C 29 1_555 C U 15 1_555 -0.478 0.505 -0.329 5.650 -2.970 -41.630 26 E_C429:U415_E E 429 ? E 415 ? ? ? 1 C G 30 1_555 C C 11 1_555 0.437 -0.327 0.881 5.131 -25.296 -7.315 27 E_G430:C411_E E 430 ? E 411 ? 19 1 1 C A 31 1_555 C A 14 1_555 -1.337 -1.670 -0.657 19.298 -4.426 169.044 28 E_A431:A414_E E 431 ? E 414 ? 1 2 1 C G 32 1_555 C C 13 1_555 -0.952 -0.312 -0.156 -5.087 -19.130 0.595 29 E_G432:C413_E E 432 ? E 413 ? 19 1 1 C C 33 1_555 C G 12 1_555 0.311 -0.324 -0.290 0.256 -23.240 -4.181 30 E_C433:G412_E E 433 ? E 412 ? 19 1 1 D G 7 1_555 D C 22 1_555 0.054 -0.476 -0.011 -2.358 -17.471 -9.764 31 G_G607:C622_G G 607 ? G 622 ? 19 1 1 D G 8 1_555 D C 21 1_555 0.418 -0.538 0.104 -9.651 -29.269 -2.852 32 G_G608:C621_G G 608 ? G 621 ? 19 1 1 D U 9 1_555 D A 20 1_555 -0.165 -0.084 0.432 -9.646 -21.304 -14.010 33 G_U609:A620_G G 609 ? G 620 ? 20 1 1 D G 26 1_555 D C 19 1_555 -0.345 -0.235 -0.281 -8.116 -9.607 0.471 34 G_G626:C619_G G 626 ? G 619 ? 19 1 1 D G 28 1_555 D C 18 1_555 0.557 -0.172 0.084 -17.161 -9.775 0.462 35 G_G628:C618_G G 628 ? G 618 ? 19 1 1 D C 29 1_555 D U 15 1_555 -0.280 0.640 -0.205 4.328 -5.534 -46.579 36 G_C629:U615_G G 629 ? G 615 ? ? ? 1 D G 30 1_555 D C 11 1_555 0.261 -0.057 0.410 1.614 -19.195 -3.375 37 G_G630:C611_G G 630 ? G 611 ? 19 1 1 D A 31 1_555 D A 14 1_555 -1.677 -0.900 -0.437 25.000 0.215 163.130 38 G_A631:A614_G G 631 ? G 614 ? ? ? 1 D G 32 1_555 D C 13 1_555 0.010 -0.184 -0.038 -1.160 -9.311 -1.615 39 G_G632:C613_G G 632 ? G 613 ? 19 1 1 D C 33 1_555 D G 12 1_555 0.622 -0.008 0.705 -5.970 -11.995 6.364 40 G_C633:G612_G G 633 ? G 612 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 7 1_555 A C 22 1_555 A G 8 1_555 A C 21 1_555 0.994 -1.304 3.364 -0.167 11.819 32.908 -3.897 -1.682 2.742 20.075 0.284 34.911 1 AA_G7G8:C21C22_AA A 7 ? A 22 ? A 8 ? A 21 ? 1 A G 8 1_555 A C 21 1_555 A U 9 1_555 A A 20 1_555 -1.066 -1.558 2.985 1.469 5.212 31.733 -3.618 2.150 2.651 9.445 -2.662 32.180 2 AA_G8U9:A20C21_AA A 8 ? A 21 ? A 9 ? A 20 ? 1 A U 9 1_555 A A 20 1_555 A G 26 1_555 A C 19 1_555 -0.989 -1.295 3.419 6.029 8.949 47.718 -2.243 1.652 3.006 10.900 -7.343 48.853 3 AA_U9G26:C19A20_AA A 9 ? A 20 ? A 26 ? A 19 ? 1 A G 26 1_555 A C 19 1_555 A G 28 1_555 A C 18 1_555 -2.160 -1.151 3.424 -2.675 -2.004 53.452 -1.143 2.218 3.559 -2.226 2.971 53.549 4 AA_G26G28:C18C19_AA A 26 ? A 19 ? A 28 ? A 18 ? 1 A G 28 1_555 A C 18 1_555 A C 29 1_555 A U 15 1_555 2.786 -1.411 3.721 -2.247 10.320 71.827 -1.568 -2.438 3.443 8.750 1.905 72.496 5 AA_G28C29:U15C18_AA A 28 ? A 18 ? A 29 ? A 15 ? 1 A C 29 1_555 A U 15 1_555 A G 30 1_555 A C 11 1_555 3.267 -0.481 -1.751 21.292 -174.031 -9.253 -1.026 1.480 -1.013 89.147 10.907 -175.344 6 AA_C29G30:C11U15_AA A 29 ? A 15 ? A 30 ? A 11 ? 1 A G 30 1_555 A C 11 1_555 A A 31 1_555 A A 14 1_555 -3.023 -4.560 -2.021 91.087 -29.144 -84.291 2.463 -2.261 -0.620 17.888 55.906 -120.282 7 AA_G30A31:A14C11_AA A 30 ? A 11 ? A 31 ? A 14 ? 1 A A 31 1_555 A A 14 1_555 A G 32 1_555 A C 13 1_555 1.124 -0.927 3.480 -2.018 -1.524 115.808 -0.530 -0.686 3.474 -0.899 1.191 115.826 8 AA_A31G32:C13A14_AA A 31 ? A 14 ? A 32 ? A 13 ? 1 A G 32 1_555 A C 13 1_555 A C 33 1_555 A G 12 1_555 -0.116 -1.408 3.215 -4.281 -1.605 39.036 -1.905 -0.334 3.262 -2.392 6.380 39.293 9 AA_G32C33:G12C13_AA A 32 ? A 13 ? A 33 ? A 12 ? 1 B G 7 1_555 B C 22 1_555 B G 8 1_555 B C 21 1_555 1.141 -1.852 3.554 11.287 20.846 32.937 -5.019 -0.387 2.300 32.108 -17.385 40.388 10 CC_G207G208:C221C222_CC C 207 ? C 222 ? C 208 ? C 221 ? 1 B G 8 1_555 B C 21 1_555 B U 9 1_555 B A 20 1_555 -0.889 -1.286 3.058 -5.786 4.683 34.096 -2.808 0.665 2.968 7.871 9.724 34.876 11 CC_G208U209:A220C221_CC C 208 ? C 221 ? C 209 ? C 220 ? 1 B U 9 1_555 B A 20 1_555 B G 26 1_555 B C 19 1_555 -1.592 -1.718 3.279 3.805 2.356 42.984 -2.556 2.523 3.040 3.204 -5.176 43.206 12 CC_U209G226:C219A220_CC C 209 ? C 220 ? C 226 ? C 219 ? 1 B G 26 1_555 B C 19 1_555 B G 28 1_555 B C 18 1_555 -2.715 -1.022 3.475 -2.528 -1.424 57.946 -0.972 2.655 3.602 -1.469 2.608 58.012 13 CC_G226G228:C218C219_CC C 226 ? C 219 ? C 228 ? C 218 ? 1 B G 28 1_555 B C 18 1_555 B C 29 1_555 B U 15 1_555 2.799 -1.596 3.090 -5.612 7.422 69.186 -1.634 -2.628 2.723 6.507 4.919 69.732 14 CC_G228C229:U215C218_CC C 228 ? C 218 ? C 229 ? C 215 ? 1 B C 29 1_555 B U 15 1_555 B G 30 1_555 B C 11 1_555 3.527 1.749 -1.373 8.248 -168.927 -116.904 -1.118 1.754 -0.350 85.262 4.163 -174.318 15 CC_C229G230:C211U215_CC C 229 ? C 215 ? C 230 ? C 211 ? 1 B G 30 1_555 B C 11 1_555 B A 31 1_555 B A 14 1_555 -3.165 -4.246 -1.646 93.653 -31.981 -99.528 2.227 -2.073 -0.506 18.381 53.827 -130.374 16 CC_G230A231:A214C211_CC C 230 ? C 211 ? C 231 ? C 214 ? 1 B A 31 1_555 B A 14 1_555 B G 32 1_555 B C 13 1_555 1.012 -0.765 3.588 -1.748 -2.489 115.491 -0.423 -0.619 3.588 -1.472 1.033 115.517 17 CC_A231G232:C213A214_CC C 231 ? C 214 ? C 232 ? C 213 ? 1 B G 32 1_555 B C 13 1_555 B C 33 1_555 B G 12 1_555 -0.015 -1.250 3.071 -4.509 2.217 41.291 -1.979 -0.424 2.988 3.130 6.365 41.582 18 CC_G232C233:G212C213_CC C 232 ? C 213 ? C 233 ? C 212 ? 1 C G 7 1_555 C C 22 1_555 C G 8 1_555 C C 21 1_555 0.969 -1.897 3.479 5.470 19.923 28.721 -5.858 -0.851 1.947 35.017 -9.614 35.252 19 EE_G407G408:C421C422_EE E 407 ? E 422 ? E 408 ? E 421 ? 1 C G 8 1_555 C C 21 1_555 C U 9 1_555 C A 20 1_555 -0.804 -1.234 2.848 -3.110 2.256 34.275 -2.386 0.936 2.823 3.813 5.257 34.484 20 EE_G408U409:A420C421_EE E 408 ? E 421 ? E 409 ? E 420 ? 1 C U 9 1_555 C A 20 1_555 C G 26 1_555 C C 19 1_555 -1.948 -1.320 3.937 6.896 5.870 46.951 -2.164 3.032 3.455 7.289 -8.561 47.767 21 EE_U409G426:C419A420_EE E 409 ? E 420 ? E 426 ? E 419 ? 1 C G 26 1_555 C C 19 1_555 C G 28 1_555 C C 18 1_555 -2.142 -0.742 3.250 -3.226 0.407 50.655 -0.894 2.270 3.365 0.475 3.766 50.752 22 EE_G426G428:C418C419_EE E 426 ? E 419 ? E 428 ? E 418 ? 1 C G 28 1_555 C C 18 1_555 C C 29 1_555 C U 15 1_555 2.722 -0.970 2.874 -6.574 11.141 71.891 -1.117 -2.469 2.500 9.414 5.555 72.891 23 EE_G428C429:U415C418_EE E 428 ? E 418 ? E 429 ? E 415 ? 1 C C 29 1_555 C U 15 1_555 C G 30 1_555 C C 11 1_555 3.681 1.848 -1.505 10.330 -169.792 -112.910 -1.206 1.825 -0.362 85.715 5.215 -174.538 24 EE_C429G430:C411U415_EE E 429 ? E 415 ? E 430 ? E 411 ? 1 C G 30 1_555 C C 11 1_555 C A 31 1_555 C A 14 1_555 -3.183 -4.165 -1.738 90.290 -31.095 -99.274 2.192 -2.121 -0.591 18.010 52.295 -128.370 25 EE_G430A431:A414C411_EE E 430 ? E 411 ? E 431 ? E 414 ? 1 C A 31 1_555 C A 14 1_555 C G 32 1_555 C C 13 1_555 0.927 -0.746 3.333 -1.176 -3.075 112.028 -0.413 -0.573 3.340 -1.854 0.709 112.060 26 EE_A431G432:C413A414_EE E 431 ? E 414 ? E 432 ? E 413 ? 1 C G 32 1_555 C C 13 1_555 C C 33 1_555 C G 12 1_555 -0.255 -1.140 3.168 -0.308 -0.524 42.817 -1.511 0.319 3.183 -0.717 0.422 42.821 27 EE_G432C433:G412C413_EE E 432 ? E 413 ? E 433 ? E 412 ? 1 D G 7 1_555 D C 22 1_555 D G 8 1_555 D C 21 1_555 0.381 -1.445 3.410 -2.708 13.952 37.017 -3.715 -0.869 2.681 21.048 4.085 39.563 28 GG_G607G608:C621C622_GG G 607 ? G 622 ? G 608 ? G 621 ? 1 D G 8 1_555 D C 21 1_555 D U 9 1_555 D A 20 1_555 -0.951 -1.727 2.945 -3.738 4.324 31.902 -3.768 1.124 2.783 7.788 6.733 32.397 29 GG_G608U609:A620C621_GG G 608 ? G 621 ? G 609 ? G 620 ? 1 D U 9 1_555 D A 20 1_555 D G 26 1_555 D C 19 1_555 -0.929 -1.744 3.350 8.975 5.790 45.643 -2.661 1.891 2.898 7.346 -11.386 46.810 30 GG_U609G626:C619A620_GG G 609 ? G 620 ? G 626 ? G 619 ? 1 D G 26 1_555 D C 19 1_555 D G 28 1_555 D C 18 1_555 -2.385 -0.708 3.541 -3.967 -1.167 60.303 -0.641 2.155 3.688 -1.160 3.944 60.431 31 GG_G626G628:C618C619_GG G 626 ? G 619 ? G 628 ? G 618 ? 1 D G 28 1_555 D C 18 1_555 D C 29 1_555 D U 15 1_555 2.540 -1.996 3.070 -1.919 4.682 67.914 -1.944 -2.335 2.880 4.185 1.715 68.080 32 GG_G628C629:U615C618_GG G 628 ? G 618 ? G 629 ? G 615 ? 1 D C 29 1_555 D U 15 1_555 D G 30 1_555 D C 11 1_555 3.560 0.825 -2.221 9.001 -168.657 -66.886 -1.199 1.744 -0.700 86.810 4.633 -170.739 33 GG_C629G630:C611U615_GG G 629 ? G 615 ? G 630 ? G 611 ? 1 D G 30 1_555 D C 11 1_555 D A 31 1_555 D A 14 1_555 -3.326 -4.318 -1.910 90.770 -38.591 -92.606 2.230 -2.306 -0.742 22.747 53.504 -126.468 34 GG_G630A631:A614C611_GG G 630 ? G 611 ? G 631 ? G 614 ? 1 D A 31 1_555 D A 14 1_555 D G 32 1_555 D C 13 1_555 1.314 -0.809 3.324 -2.050 -0.177 111.906 -0.486 -0.817 3.309 -0.107 1.237 111.918 35 GG_A631G632:C613A614_GG G 631 ? G 614 ? G 632 ? G 613 ? 1 D G 32 1_555 D C 13 1_555 D C 33 1_555 D G 12 1_555 0.121 -1.569 3.478 -5.835 -3.248 37.509 -1.959 -0.986 3.539 -5.002 8.987 38.077 36 GG_G632C633:G612C613_GG G 632 ? G 613 ? G 633 ? G 612 ? # _atom_sites.entry_id 1DDY _atom_sites.fract_transf_matrix[1][1] .010949 _atom_sites.fract_transf_matrix[1][2] .000000 _atom_sites.fract_transf_matrix[1][3] .000000 _atom_sites.fract_transf_matrix[2][1] .000000 _atom_sites.fract_transf_matrix[2][2] .006177 _atom_sites.fract_transf_matrix[2][3] .000000 _atom_sites.fract_transf_matrix[3][1] .000000 _atom_sites.fract_transf_matrix[3][2] .000000 _atom_sites.fract_transf_matrix[3][3] .009905 _atom_sites.fract_transf_vector[1] .00000 _atom_sites.fract_transf_vector[2] .00000 _atom_sites.fract_transf_vector[3] .00000 # loop_ _atom_type.symbol C CO N O P # loop_