data_1DQL # _entry.id 1DQL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.320 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1DQL RCSB RCSB010298 WWPDB D_1000010298 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1DQL _pdbx_database_status.recvd_initial_deposition_date 2000-01-04 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ramsland, P.A.' 1 'Shan, L.' 2 'Moomaw, C.R.' 3 'Slaughter, C.A.' 4 'Guddat, L.W.' 5 'Edmundson, A.B.' 6 # _citation.id primary _citation.title 'An unusual human IgM antibody with a protruding HCDR3 and high avidity for its peptide ligands.' _citation.journal_abbrev Mol.Immunol. _citation.journal_volume 37 _citation.page_first 295 _citation.page_last 310 _citation.year 2000 _citation.journal_id_ASTM MOIMD5 _citation.country UK _citation.journal_id_ISSN 0161-5890 _citation.journal_id_CSD 0921 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11000403 _citation.pdbx_database_id_DOI '10.1016/S0161-5890(00)00049-3' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ramsland, P.A.' 1 ? primary 'Shan, L.' 2 ? primary 'Moomaw, C.R.' 3 ? primary 'Slaughter, C.A.' 4 ? primary 'Fan, Z.' 5 ? primary 'Guddat, L.W.' 6 ? primary 'Edmundson, A.B.' 7 ? # _cell.entry_id 1DQL _cell.length_a 53.570 _cell.length_b 61.130 _cell.length_c 42.200 _cell.angle_alpha 90.00 _cell.angle_beta 96.90 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DQL _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'IGM MEZ IMMUNOGLOBULIN' 11527.743 1 ? ? 'LIGHT CHAIN VARIABLE DOMAIN FRAGMENT' ? 2 polymer nat 'IGM MEZ IMMUNOGLOBULIN' 13214.604 1 ? ? 'HEAVY CHAIN VARIABLE DOMAIN FRAGMENT' ? 3 water nat water 18.015 18 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;DIQMTQSPSSLSASVGDRVTITCRASQDIRNDLGWYQQKPGKAPKKLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQP EDFATYYCLQQNSNWTFGQGTKVDIK ; ;DIQMTQSPSSLSASVGDRVTITCRASQDIRNDLGWYQQKPGKAPKKLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQP EDFATYYCLQQNSNWTFGQGTKVDIK ; L ? 2 'polypeptide(L)' no yes ;(PCA)VQLVESGGGLVQPGGSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVAVISSDGGNKYYTDSVKGRFTISRNDSK NTLYLQMNSLRTEDTAVFYCARGNPPYSSGWGGGDYWGQGTMVTVSS ; ;QVQLVESGGGLVQPGGSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVAVISSDGGNKYYTDSVKGRFTISRNDSKNTLY LQMNSLRTEDTAVFYCARGNPPYSSGWGGGDYWGQGTMVTVSS ; H ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 ILE n 1 3 GLN n 1 4 MET n 1 5 THR n 1 6 GLN n 1 7 SER n 1 8 PRO n 1 9 SER n 1 10 SER n 1 11 LEU n 1 12 SER n 1 13 ALA n 1 14 SER n 1 15 VAL n 1 16 GLY n 1 17 ASP n 1 18 ARG n 1 19 VAL n 1 20 THR n 1 21 ILE n 1 22 THR n 1 23 CYS n 1 24 ARG n 1 25 ALA n 1 26 SER n 1 27 GLN n 1 28 ASP n 1 29 ILE n 1 30 ARG n 1 31 ASN n 1 32 ASP n 1 33 LEU n 1 34 GLY n 1 35 TRP n 1 36 TYR n 1 37 GLN n 1 38 GLN n 1 39 LYS n 1 40 PRO n 1 41 GLY n 1 42 LYS n 1 43 ALA n 1 44 PRO n 1 45 LYS n 1 46 LYS n 1 47 LEU n 1 48 ILE n 1 49 TYR n 1 50 ALA n 1 51 ALA n 1 52 SER n 1 53 SER n 1 54 LEU n 1 55 GLN n 1 56 SER n 1 57 GLY n 1 58 VAL n 1 59 PRO n 1 60 SER n 1 61 ARG n 1 62 PHE n 1 63 SER n 1 64 GLY n 1 65 SER n 1 66 GLY n 1 67 SER n 1 68 GLY n 1 69 THR n 1 70 ASP n 1 71 PHE n 1 72 THR n 1 73 LEU n 1 74 THR n 1 75 ILE n 1 76 SER n 1 77 SER n 1 78 LEU n 1 79 GLN n 1 80 PRO n 1 81 GLU n 1 82 ASP n 1 83 PHE n 1 84 ALA n 1 85 THR n 1 86 TYR n 1 87 TYR n 1 88 CYS n 1 89 LEU n 1 90 GLN n 1 91 GLN n 1 92 ASN n 1 93 SER n 1 94 ASN n 1 95 TRP n 1 96 THR n 1 97 PHE n 1 98 GLY n 1 99 GLN n 1 100 GLY n 1 101 THR n 1 102 LYS n 1 103 VAL n 1 104 ASP n 1 105 ILE n 1 106 LYS n 2 1 PCA n 2 2 VAL n 2 3 GLN n 2 4 LEU n 2 5 VAL n 2 6 GLU n 2 7 SER n 2 8 GLY n 2 9 GLY n 2 10 GLY n 2 11 LEU n 2 12 VAL n 2 13 GLN n 2 14 PRO n 2 15 GLY n 2 16 GLY n 2 17 SER n 2 18 LEU n 2 19 ARG n 2 20 LEU n 2 21 SER n 2 22 CYS n 2 23 ALA n 2 24 ALA n 2 25 SER n 2 26 GLY n 2 27 PHE n 2 28 THR n 2 29 PHE n 2 30 SER n 2 31 SER n 2 32 TYR n 2 33 ALA n 2 34 MET n 2 35 HIS n 2 36 TRP n 2 37 VAL n 2 38 ARG n 2 39 GLN n 2 40 ALA n 2 41 PRO n 2 42 GLY n 2 43 LYS n 2 44 GLY n 2 45 LEU n 2 46 GLU n 2 47 TRP n 2 48 VAL n 2 49 ALA n 2 50 VAL n 2 51 ILE n 2 52 SER n 2 53 SER n 2 54 ASP n 2 55 GLY n 2 56 GLY n 2 57 ASN n 2 58 LYS n 2 59 TYR n 2 60 TYR n 2 61 THR n 2 62 ASP n 2 63 SER n 2 64 VAL n 2 65 LYS n 2 66 GLY n 2 67 ARG n 2 68 PHE n 2 69 THR n 2 70 ILE n 2 71 SER n 2 72 ARG n 2 73 ASN n 2 74 ASP n 2 75 SER n 2 76 LYS n 2 77 ASN n 2 78 THR n 2 79 LEU n 2 80 TYR n 2 81 LEU n 2 82 GLN n 2 83 MET n 2 84 ASN n 2 85 SER n 2 86 LEU n 2 87 ARG n 2 88 THR n 2 89 GLU n 2 90 ASP n 2 91 THR n 2 92 ALA n 2 93 VAL n 2 94 PHE n 2 95 TYR n 2 96 CYS n 2 97 ALA n 2 98 ARG n 2 99 GLY n 2 100 ASN n 2 101 PRO n 2 102 PRO n 2 103 TYR n 2 104 SER n 2 105 SER n 2 106 GLY n 2 107 TRP n 2 108 GLY n 2 109 GLY n 2 110 GLY n 2 111 ASP n 2 112 TYR n 2 113 TRP n 2 114 GLY n 2 115 GLN n 2 116 GLY n 2 117 THR n 2 118 MET n 2 119 VAL n 2 120 THR n 2 121 VAL n 2 122 SER n 2 123 SER n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample ? ? human 'Homo sapiens' 9606 Homo ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? human 'Homo sapiens' 9606 Homo ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 1DQL 1DQL ? ? ? 2 2 PDB 1DQL 1DQL ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1DQL L 1 ? 106 ? 1DQL 1 ? 106 ? 1 106 2 2 1DQL H 1 ? 123 ? 1DQL 1 ? 123 ? 1 123 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PCA 'L-peptide linking' n 'PYROGLUTAMIC ACID' ? 'C5 H7 N O3' 129.114 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1DQL _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.72 _exptl_crystal.density_percent_sol 55.20 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'MICROSEEDING, SITTING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details '6-8% (W/V) PEG 8000, 0.05% (W/V) SODIUM AZIDE, pH 7.0, MICROSEEDING, SITTING DROP, temperature 295K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 288 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type SIEMENS _diffrn_detector.pdbx_collection_date 1990-11-19 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type SIEMENS _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1DQL _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 20.0 _reflns.d_resolution_high 2.58 _reflns.number_obs 7111 _reflns.number_all 7111 _reflns.percent_possible_obs 84.4 _reflns.pdbx_Rmerge_I_obs 0.145 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 12.4 _reflns.B_iso_Wilson_estimate 13.1 _reflns.pdbx_redundancy 2.25 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.58 _reflns_shell.d_res_low 2.75 _reflns_shell.percent_possible_all 40.0 _reflns_shell.Rmerge_I_obs 0.167 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 1.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1DQL _refine.ls_number_reflns_obs 6963 _refine.ls_number_reflns_all 6963 _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.0 _refine.ls_d_res_high 2.6 _refine.ls_percent_reflns_obs 83.4 _refine.ls_R_factor_obs 0.191 _refine.ls_R_factor_all 0.191 _refine.ls_R_factor_R_work 0.181 _refine.ls_R_factor_R_free 0.261 _refine.ls_R_factor_R_free_error 0.009 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 11.0 _refine.ls_number_reflns_R_free 764 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 18.9 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.252 _refine.solvent_model_param_bsol 14.31 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH & HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1DQL _refine_analyze.Luzzati_coordinate_error_obs 0.28 _refine_analyze.Luzzati_sigma_a_obs 0.38 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.41 _refine_analyze.Luzzati_sigma_a_free 0.57 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1740 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 18 _refine_hist.number_atoms_total 1758 _refine_hist.d_res_high 2.6 _refine_hist.d_res_low 20.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.35 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 27.80 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.78 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.60 _refine_ls_shell.d_res_low 2.76 _refine_ls_shell.number_reflns_R_work 502 _refine_ls_shell.R_factor_R_work 0.286 _refine_ls_shell.percent_reflns_obs 40.6 _refine_ls_shell.R_factor_R_free 0.379 _refine_ls_shell.R_factor_R_free_error 0.047 _refine_ls_shell.percent_reflns_R_free 11.5 _refine_ls_shell.number_reflns_R_free 65 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 pca.par pca.top 'X-RAY DIFFRACTION' 3 water_rep.param ? 'X-RAY DIFFRACTION' # _struct.entry_id 1DQL _struct.title 'CRYSTAL STRUCTURE OF AN UNLIGANDED (NATIVE) FV FROM A HUMAN IGM ANTI-PEPTIDE ANTIBODY' _struct.pdbx_descriptor 'IGM MEZ IMMUNOGLOBULIN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1DQL _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' _struct_keywords.text 'IMMUNOGLOBULIN FOLD, ANTIBODY, IgM, Fv, IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details 'The Mez Fv is a non-covalent heterodimer of VL (chain L) and VH (chain H)' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR B 28 ? TYR B 32 ? THR H 28 TYR H 32 5 ? 5 HELX_P HELX_P2 2 ASP B 62 ? VAL B 64 ? ASP H 62 VAL H 64 5 ? 3 HELX_P HELX_P3 3 ARG B 87 ? THR B 91 ? ARG H 87 THR H 91 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 23 SG ? ? ? 1_555 A CYS 88 SG ? ? L CYS 23 L CYS 88 1_555 ? ? ? ? ? ? ? 2.030 ? disulf2 disulf ? ? B CYS 22 SG ? ? ? 1_555 B CYS 96 SG ? ? H CYS 22 H CYS 96 1_555 ? ? ? ? ? ? ? 2.032 ? covale1 covale both ? B PCA 1 C ? ? ? 1_555 B VAL 2 N ? ? H PCA 1 H VAL 2 1_555 ? ? ? ? ? ? ? 1.323 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id SER _struct_mon_prot_cis.label_seq_id 7 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id SER _struct_mon_prot_cis.auth_seq_id 7 _struct_mon_prot_cis.auth_asym_id L _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 8 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 8 _struct_mon_prot_cis.pdbx_auth_asym_id_2 L _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.88 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 5 ? C ? 6 ? D ? 4 ? E ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel C 5 6 ? parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel E 1 2 ? parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel E 4 5 ? anti-parallel E 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 5 ? SER A 7 ? THR L 5 SER L 7 A 2 VAL A 19 ? ARG A 24 ? VAL L 19 ARG L 24 A 3 ASP A 70 ? ILE A 75 ? ASP L 70 ILE L 75 A 4 PHE A 62 ? SER A 67 ? PHE L 62 SER L 67 B 1 SER A 53 ? LEU A 54 ? SER L 53 LEU L 54 B 2 LYS A 45 ? TYR A 49 ? LYS L 45 TYR L 49 B 3 LEU A 33 ? GLN A 38 ? LEU L 33 GLN L 38 B 4 THR A 85 ? GLN A 90 ? THR L 85 GLN L 90 B 5 THR A 96 ? PHE A 97 ? THR L 96 PHE L 97 C 1 SER A 53 ? LEU A 54 ? SER L 53 LEU L 54 C 2 LYS A 45 ? TYR A 49 ? LYS L 45 TYR L 49 C 3 LEU A 33 ? GLN A 38 ? LEU L 33 GLN L 38 C 4 THR A 85 ? GLN A 90 ? THR L 85 GLN L 90 C 5 THR A 101 ? ILE A 105 ? THR L 101 ILE L 105 C 6 SER A 10 ? ALA A 13 ? SER L 10 ALA L 13 D 1 GLN B 3 ? SER B 7 ? GLN H 3 SER H 7 D 2 LEU B 18 ? SER B 25 ? LEU H 18 SER H 25 D 3 THR B 78 ? MET B 83 ? THR H 78 MET H 83 D 4 PHE B 68 ? ASN B 73 ? PHE H 68 ASN H 73 E 1 LEU B 11 ? VAL B 12 ? LEU H 11 VAL H 12 E 2 THR B 117 ? VAL B 121 ? THR H 117 VAL H 121 E 3 ALA B 92 ? ARG B 98 ? ALA H 92 ARG H 98 E 4 MET B 34 ? GLN B 39 ? MET H 34 GLN H 39 E 5 LEU B 45 ? ILE B 51 ? LEU H 45 ILE H 51 E 6 LYS B 58 ? TYR B 60 ? LYS H 58 TYR H 60 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER A 7 ? N SER L 7 O THR A 22 ? O THR L 22 A 2 3 O CYS A 23 ? O CYS L 23 N PHE A 71 ? N PHE L 71 A 3 4 N THR A 74 ? N THR L 74 O SER A 63 ? O SER L 63 B 1 2 O SER A 53 ? O SER L 53 N TYR A 49 ? N TYR L 49 B 2 3 N LEU A 47 ? N LEU L 47 O TRP A 35 ? O TRP L 35 B 3 4 N GLN A 38 ? N GLN L 38 O THR A 85 ? O THR L 85 B 4 5 N GLN A 90 ? N GLN L 90 O THR A 96 ? O THR L 96 C 1 2 O SER A 53 ? O SER L 53 N TYR A 49 ? N TYR L 49 C 2 3 N LEU A 47 ? N LEU L 47 O TRP A 35 ? O TRP L 35 C 3 4 N GLN A 38 ? N GLN L 38 O THR A 85 ? O THR L 85 C 4 5 N TYR A 86 ? N TYR L 86 O THR A 101 ? O THR L 101 C 5 6 N ASP A 104 ? N ASP L 104 O LEU A 11 ? O LEU L 11 D 1 2 N SER B 7 ? N SER H 7 O SER B 21 ? O SER H 21 D 2 3 N CYS B 22 ? N CYS H 22 O LEU B 79 ? O LEU H 79 D 3 4 N GLN B 82 ? N GLN H 82 O THR B 69 ? O THR H 69 E 1 2 N VAL B 12 ? N VAL H 12 O THR B 120 ? O THR H 120 E 2 3 N VAL B 119 ? N VAL H 119 O ALA B 92 ? O ALA H 92 E 3 4 O ALA B 97 ? O ALA H 97 N HIS B 35 ? N HIS H 35 E 4 5 N ARG B 38 ? N ARG H 38 O GLU B 46 ? O GLU H 46 E 5 6 O VAL B 50 ? O VAL H 50 N TYR B 59 ? N TYR H 59 # _database_PDB_matrix.entry_id 1DQL _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1DQL _atom_sites.fract_transf_matrix[1][1] 0.018667 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002259 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016359 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023870 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 1 1 ASP ASP L . n A 1 2 ILE 2 2 2 ILE ILE L . n A 1 3 GLN 3 3 3 GLN GLN L . n A 1 4 MET 4 4 4 MET MET L . n A 1 5 THR 5 5 5 THR THR L . n A 1 6 GLN 6 6 6 GLN GLN L . n A 1 7 SER 7 7 7 SER SER L . n A 1 8 PRO 8 8 8 PRO PRO L . n A 1 9 SER 9 9 9 SER SER L . n A 1 10 SER 10 10 10 SER SER L . n A 1 11 LEU 11 11 11 LEU LEU L . n A 1 12 SER 12 12 12 SER SER L . n A 1 13 ALA 13 13 13 ALA ALA L . n A 1 14 SER 14 14 14 SER SER L . n A 1 15 VAL 15 15 15 VAL VAL L . n A 1 16 GLY 16 16 16 GLY GLY L . n A 1 17 ASP 17 17 17 ASP ASP L . n A 1 18 ARG 18 18 18 ARG ARG L . n A 1 19 VAL 19 19 19 VAL VAL L . n A 1 20 THR 20 20 20 THR THR L . n A 1 21 ILE 21 21 21 ILE ILE L . n A 1 22 THR 22 22 22 THR THR L . n A 1 23 CYS 23 23 23 CYS CYS L . n A 1 24 ARG 24 24 24 ARG ARG L . n A 1 25 ALA 25 25 25 ALA ALA L . n A 1 26 SER 26 26 26 SER SER L . n A 1 27 GLN 27 27 27 GLN GLN L . n A 1 28 ASP 28 28 28 ASP ASP L . n A 1 29 ILE 29 29 29 ILE ILE L . n A 1 30 ARG 30 30 30 ARG ARG L . n A 1 31 ASN 31 31 31 ASN ASN L . n A 1 32 ASP 32 32 32 ASP ASP L . n A 1 33 LEU 33 33 33 LEU LEU L . n A 1 34 GLY 34 34 34 GLY GLY L . n A 1 35 TRP 35 35 35 TRP TRP L . n A 1 36 TYR 36 36 36 TYR TYR L . n A 1 37 GLN 37 37 37 GLN GLN L . n A 1 38 GLN 38 38 38 GLN GLN L . n A 1 39 LYS 39 39 39 LYS LYS L . n A 1 40 PRO 40 40 40 PRO PRO L . n A 1 41 GLY 41 41 41 GLY GLY L . n A 1 42 LYS 42 42 42 LYS LYS L . n A 1 43 ALA 43 43 43 ALA ALA L . n A 1 44 PRO 44 44 44 PRO PRO L . n A 1 45 LYS 45 45 45 LYS LYS L . n A 1 46 LYS 46 46 46 LYS LYS L . n A 1 47 LEU 47 47 47 LEU LEU L . n A 1 48 ILE 48 48 48 ILE ILE L . n A 1 49 TYR 49 49 49 TYR TYR L . n A 1 50 ALA 50 50 50 ALA ALA L . n A 1 51 ALA 51 51 51 ALA ALA L . n A 1 52 SER 52 52 52 SER SER L . n A 1 53 SER 53 53 53 SER SER L . n A 1 54 LEU 54 54 54 LEU LEU L . n A 1 55 GLN 55 55 55 GLN GLN L . n A 1 56 SER 56 56 56 SER SER L . n A 1 57 GLY 57 57 57 GLY GLY L . n A 1 58 VAL 58 58 58 VAL VAL L . n A 1 59 PRO 59 59 59 PRO PRO L . n A 1 60 SER 60 60 60 SER SER L . n A 1 61 ARG 61 61 61 ARG ARG L . n A 1 62 PHE 62 62 62 PHE PHE L . n A 1 63 SER 63 63 63 SER SER L . n A 1 64 GLY 64 64 64 GLY GLY L . n A 1 65 SER 65 65 65 SER SER L . n A 1 66 GLY 66 66 66 GLY GLY L . n A 1 67 SER 67 67 67 SER SER L . n A 1 68 GLY 68 68 68 GLY GLY L . n A 1 69 THR 69 69 69 THR THR L . n A 1 70 ASP 70 70 70 ASP ASP L . n A 1 71 PHE 71 71 71 PHE PHE L . n A 1 72 THR 72 72 72 THR THR L . n A 1 73 LEU 73 73 73 LEU LEU L . n A 1 74 THR 74 74 74 THR THR L . n A 1 75 ILE 75 75 75 ILE ILE L . n A 1 76 SER 76 76 76 SER SER L . n A 1 77 SER 77 77 77 SER SER L . n A 1 78 LEU 78 78 78 LEU LEU L . n A 1 79 GLN 79 79 79 GLN GLN L . n A 1 80 PRO 80 80 80 PRO PRO L . n A 1 81 GLU 81 81 81 GLU GLU L . n A 1 82 ASP 82 82 82 ASP ASP L . n A 1 83 PHE 83 83 83 PHE PHE L . n A 1 84 ALA 84 84 84 ALA ALA L . n A 1 85 THR 85 85 85 THR THR L . n A 1 86 TYR 86 86 86 TYR TYR L . n A 1 87 TYR 87 87 87 TYR TYR L . n A 1 88 CYS 88 88 88 CYS CYS L . n A 1 89 LEU 89 89 89 LEU LEU L . n A 1 90 GLN 90 90 90 GLN GLN L . n A 1 91 GLN 91 91 91 GLN GLN L . n A 1 92 ASN 92 92 92 ASN ASN L . n A 1 93 SER 93 93 93 SER SER L . n A 1 94 ASN 94 94 94 ASN ASN L . n A 1 95 TRP 95 95 95 TRP TRP L . n A 1 96 THR 96 96 96 THR THR L . n A 1 97 PHE 97 97 97 PHE PHE L . n A 1 98 GLY 98 98 98 GLY GLY L . n A 1 99 GLN 99 99 99 GLN GLN L . n A 1 100 GLY 100 100 100 GLY GLY L . n A 1 101 THR 101 101 101 THR THR L . n A 1 102 LYS 102 102 102 LYS LYS L . n A 1 103 VAL 103 103 103 VAL VAL L . n A 1 104 ASP 104 104 104 ASP ASP L . n A 1 105 ILE 105 105 105 ILE ILE L . n A 1 106 LYS 106 106 106 LYS LYS L . n B 2 1 PCA 1 1 1 PCA PCA H . n B 2 2 VAL 2 2 2 VAL VAL H . n B 2 3 GLN 3 3 3 GLN GLN H . n B 2 4 LEU 4 4 4 LEU LEU H . n B 2 5 VAL 5 5 5 VAL VAL H . n B 2 6 GLU 6 6 6 GLU GLU H . n B 2 7 SER 7 7 7 SER SER H . n B 2 8 GLY 8 8 8 GLY GLY H . n B 2 9 GLY 9 9 9 GLY GLY H . n B 2 10 GLY 10 10 10 GLY GLY H . n B 2 11 LEU 11 11 11 LEU LEU H . n B 2 12 VAL 12 12 12 VAL VAL H . n B 2 13 GLN 13 13 13 GLN GLN H . n B 2 14 PRO 14 14 14 PRO PRO H . n B 2 15 GLY 15 15 15 GLY GLY H . n B 2 16 GLY 16 16 16 GLY GLY H . n B 2 17 SER 17 17 17 SER SER H . n B 2 18 LEU 18 18 18 LEU LEU H . n B 2 19 ARG 19 19 19 ARG ARG H . n B 2 20 LEU 20 20 20 LEU LEU H . n B 2 21 SER 21 21 21 SER SER H . n B 2 22 CYS 22 22 22 CYS CYS H . n B 2 23 ALA 23 23 23 ALA ALA H . n B 2 24 ALA 24 24 24 ALA ALA H . n B 2 25 SER 25 25 25 SER SER H . n B 2 26 GLY 26 26 26 GLY GLY H . n B 2 27 PHE 27 27 27 PHE PHE H . n B 2 28 THR 28 28 28 THR THR H . n B 2 29 PHE 29 29 29 PHE PHE H . n B 2 30 SER 30 30 30 SER SER H . n B 2 31 SER 31 31 31 SER SER H . n B 2 32 TYR 32 32 32 TYR TYR H . n B 2 33 ALA 33 33 33 ALA ALA H . n B 2 34 MET 34 34 34 MET MET H . n B 2 35 HIS 35 35 35 HIS HIS H . n B 2 36 TRP 36 36 36 TRP TRP H . n B 2 37 VAL 37 37 37 VAL VAL H . n B 2 38 ARG 38 38 38 ARG ARG H . n B 2 39 GLN 39 39 39 GLN GLN H . n B 2 40 ALA 40 40 40 ALA ALA H . n B 2 41 PRO 41 41 41 PRO PRO H . n B 2 42 GLY 42 42 42 GLY GLY H . n B 2 43 LYS 43 43 43 LYS LYS H . n B 2 44 GLY 44 44 44 GLY GLY H . n B 2 45 LEU 45 45 45 LEU LEU H . n B 2 46 GLU 46 46 46 GLU GLU H . n B 2 47 TRP 47 47 47 TRP TRP H . n B 2 48 VAL 48 48 48 VAL VAL H . n B 2 49 ALA 49 49 49 ALA ALA H . n B 2 50 VAL 50 50 50 VAL VAL H . n B 2 51 ILE 51 51 51 ILE ILE H . n B 2 52 SER 52 52 52 SER SER H . n B 2 53 SER 53 53 53 SER SER H . n B 2 54 ASP 54 54 54 ASP ASP H . n B 2 55 GLY 55 55 55 GLY GLY H . n B 2 56 GLY 56 56 56 GLY GLY H . n B 2 57 ASN 57 57 57 ASN ASN H . n B 2 58 LYS 58 58 58 LYS LYS H . n B 2 59 TYR 59 59 59 TYR TYR H . n B 2 60 TYR 60 60 60 TYR TYR H . n B 2 61 THR 61 61 61 THR THR H . n B 2 62 ASP 62 62 62 ASP ASP H . n B 2 63 SER 63 63 63 SER SER H . n B 2 64 VAL 64 64 64 VAL VAL H . n B 2 65 LYS 65 65 65 LYS LYS H . n B 2 66 GLY 66 66 66 GLY GLY H . n B 2 67 ARG 67 67 67 ARG ARG H . n B 2 68 PHE 68 68 68 PHE PHE H . n B 2 69 THR 69 69 69 THR THR H . n B 2 70 ILE 70 70 70 ILE ILE H . n B 2 71 SER 71 71 71 SER SER H . n B 2 72 ARG 72 72 72 ARG ARG H . n B 2 73 ASN 73 73 73 ASN ASN H . n B 2 74 ASP 74 74 74 ASP ASP H . n B 2 75 SER 75 75 75 SER SER H . n B 2 76 LYS 76 76 76 LYS LYS H . n B 2 77 ASN 77 77 77 ASN ASN H . n B 2 78 THR 78 78 78 THR THR H . n B 2 79 LEU 79 79 79 LEU LEU H . n B 2 80 TYR 80 80 80 TYR TYR H . n B 2 81 LEU 81 81 81 LEU LEU H . n B 2 82 GLN 82 82 82 GLN GLN H . n B 2 83 MET 83 83 83 MET MET H . n B 2 84 ASN 84 84 84 ASN ASN H . n B 2 85 SER 85 85 85 SER SER H . n B 2 86 LEU 86 86 86 LEU LEU H . n B 2 87 ARG 87 87 87 ARG ARG H . n B 2 88 THR 88 88 88 THR THR H . n B 2 89 GLU 89 89 89 GLU GLU H . n B 2 90 ASP 90 90 90 ASP ASP H . n B 2 91 THR 91 91 91 THR THR H . n B 2 92 ALA 92 92 92 ALA ALA H . n B 2 93 VAL 93 93 93 VAL VAL H . n B 2 94 PHE 94 94 94 PHE PHE H . n B 2 95 TYR 95 95 95 TYR TYR H . n B 2 96 CYS 96 96 96 CYS CYS H . n B 2 97 ALA 97 97 97 ALA ALA H . n B 2 98 ARG 98 98 98 ARG ARG H . n B 2 99 GLY 99 99 99 GLY GLY H . n B 2 100 ASN 100 100 100 ASN ASN H . n B 2 101 PRO 101 101 101 PRO PRO H . n B 2 102 PRO 102 102 102 PRO PRO H . n B 2 103 TYR 103 103 103 TYR TYR H . n B 2 104 SER 104 104 104 SER SER H . n B 2 105 SER 105 105 105 SER SER H . n B 2 106 GLY 106 106 106 GLY GLY H . n B 2 107 TRP 107 107 107 TRP TRP H . n B 2 108 GLY 108 108 108 GLY GLY H . n B 2 109 GLY 109 109 109 GLY GLY H . n B 2 110 GLY 110 110 110 GLY GLY H . n B 2 111 ASP 111 111 111 ASP ASP H . n B 2 112 TYR 112 112 112 TYR TYR H . n B 2 113 TRP 113 113 113 TRP TRP H . n B 2 114 GLY 114 114 114 GLY GLY H . n B 2 115 GLN 115 115 115 GLN GLN H . n B 2 116 GLY 116 116 116 GLY GLY H . n B 2 117 THR 117 117 117 THR THR H . n B 2 118 MET 118 118 118 MET MET H . n B 2 119 VAL 119 119 119 VAL VAL H . n B 2 120 THR 120 120 120 THR THR H . n B 2 121 VAL 121 121 121 VAL VAL H . n B 2 122 SER 122 122 122 SER SER H . n B 2 123 SER 123 123 123 SER SER H . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 107 3 HOH HOH L . C 3 HOH 2 108 4 HOH HOH L . C 3 HOH 3 109 5 HOH HOH L . C 3 HOH 4 110 6 HOH HOH L . C 3 HOH 5 111 10 HOH HOH L . C 3 HOH 6 112 11 HOH HOH L . C 3 HOH 7 113 12 HOH HOH L . C 3 HOH 8 114 13 HOH HOH L . C 3 HOH 9 115 14 HOH HOH L . C 3 HOH 10 116 15 HOH HOH L . D 3 HOH 1 124 1 HOH HOH H . D 3 HOH 2 125 2 HOH HOH H . D 3 HOH 3 126 7 HOH HOH H . D 3 HOH 4 127 8 HOH HOH H . D 3 HOH 5 128 9 HOH HOH H . D 3 HOH 6 129 16 HOH HOH H . D 3 HOH 7 130 17 HOH HOH H . D 3 HOH 8 131 18 HOH HOH H . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id PCA _pdbx_struct_mod_residue.label_seq_id 1 _pdbx_struct_mod_residue.auth_asym_id H _pdbx_struct_mod_residue.auth_comp_id PCA _pdbx_struct_mod_residue.auth_seq_id 1 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id GLN _pdbx_struct_mod_residue.details 'PYROGLUTAMIC ACID' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1380 ? 1 MORE -8 ? 1 'SSA (A^2)' 10640 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-10-04 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-04 5 'Structure model' 2 0 2019-12-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Derived calculations' 5 5 'Structure model' 'Polymer sequence' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' entity_poly 3 5 'Structure model' pdbx_struct_mod_residue 4 5 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can' 2 5 'Structure model' '_pdbx_struct_mod_residue.parent_comp_id' 3 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-GEN 'data scaling' . ? 1 X-GEN 'data reduction' . ? 2 AMoRE phasing . ? 3 CNS refinement . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG L 30 ? ? 55.79 -118.29 2 1 ALA L 51 ? ? 64.30 -43.90 3 1 ALA L 84 ? ? -179.21 -176.20 4 1 SER L 93 ? ? -137.25 -149.03 5 1 ASP H 74 ? ? -68.83 14.35 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #