data_1E9L # _entry.id 1E9L # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1E9L PDBE EBI-5465 WWPDB D_1290005465 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1E9L _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2000-10-21 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hsiao, C.D.' 1 'Sun, Y.J.' 2 # _citation.id primary _citation.title 'The Crystal Structure of a Novel Mammalian Lectin, Ym1, Suggests a Saccharide Binding Site' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 276 _citation.page_first 17507 _citation.page_last ? _citation.year 2001 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11278670 _citation.pdbx_database_id_DOI 10.1074/JBC.M010416200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sun, Y.J.' 1 ? primary 'Chang, N.C.' 2 ? primary 'Hung, S.I.' 3 ? primary 'Chang, A.C.' 4 ? primary 'Chou, C.C.' 5 ? primary 'Hsiao, C.D.' 6 ? # _cell.entry_id 1E9L _cell.length_a 51.340 _cell.length_b 60.660 _cell.length_c 60.760 _cell.angle_alpha 90.00 _cell.angle_beta 94.61 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1E9L _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'YM1 SECRETORY PROTEIN' 42365.516 1 ? ? ? ? 2 non-polymer man 2-amino-2-deoxy-beta-D-glucopyranose 179.171 1 ? ? ? ? 3 water nat water 18.015 214 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;YQLMCYYTSWAKDRPIEGSFKPGNIDPCLCTHLIYAFAGMQNNEITYTHEQDLRDYEALNGLKDKNTELKTLLAIGGWKF GPAPFSAMVSTPQNRQIFIQSVIRFLRQYNFDGLNLDWQYPGSRGSPPKDKHLFSVLVKEMRKAFEEESVEKDIPRLLLT STGAGIIDVIKSGYKIPELSQSLDYIQVMTYDLHDPKDGYTGENSPLYKSPYDIGKSADLNVDSIISYWKDHGAASEKLI VGFPAYGHTFILSDPSKTGIGAPTISTGPPGKYTDESGLLAYYEVCTFLNEGATEVWDAPQEVPYAYQGNEWVGYDNVRS FKLKAQWLKDNNLGGAVVWPLDMDDFSGSFCHQRHFPLTSTLKGDLNIHSASCKGPY ; _entity_poly.pdbx_seq_one_letter_code_can ;YQLMCYYTSWAKDRPIEGSFKPGNIDPCLCTHLIYAFAGMQNNEITYTHEQDLRDYEALNGLKDKNTELKTLLAIGGWKF GPAPFSAMVSTPQNRQIFIQSVIRFLRQYNFDGLNLDWQYPGSRGSPPKDKHLFSVLVKEMRKAFEEESVEKDIPRLLLT STGAGIIDVIKSGYKIPELSQSLDYIQVMTYDLHDPKDGYTGENSPLYKSPYDIGKSADLNVDSIISYWKDHGAASEKLI VGFPAYGHTFILSDPSKTGIGAPTISTGPPGKYTDESGLLAYYEVCTFLNEGATEVWDAPQEVPYAYQGNEWVGYDNVRS FKLKAQWLKDNNLGGAVVWPLDMDDFSGSFCHQRHFPLTSTLKGDLNIHSASCKGPY ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 TYR n 1 2 GLN n 1 3 LEU n 1 4 MET n 1 5 CYS n 1 6 TYR n 1 7 TYR n 1 8 THR n 1 9 SER n 1 10 TRP n 1 11 ALA n 1 12 LYS n 1 13 ASP n 1 14 ARG n 1 15 PRO n 1 16 ILE n 1 17 GLU n 1 18 GLY n 1 19 SER n 1 20 PHE n 1 21 LYS n 1 22 PRO n 1 23 GLY n 1 24 ASN n 1 25 ILE n 1 26 ASP n 1 27 PRO n 1 28 CYS n 1 29 LEU n 1 30 CYS n 1 31 THR n 1 32 HIS n 1 33 LEU n 1 34 ILE n 1 35 TYR n 1 36 ALA n 1 37 PHE n 1 38 ALA n 1 39 GLY n 1 40 MET n 1 41 GLN n 1 42 ASN n 1 43 ASN n 1 44 GLU n 1 45 ILE n 1 46 THR n 1 47 TYR n 1 48 THR n 1 49 HIS n 1 50 GLU n 1 51 GLN n 1 52 ASP n 1 53 LEU n 1 54 ARG n 1 55 ASP n 1 56 TYR n 1 57 GLU n 1 58 ALA n 1 59 LEU n 1 60 ASN n 1 61 GLY n 1 62 LEU n 1 63 LYS n 1 64 ASP n 1 65 LYS n 1 66 ASN n 1 67 THR n 1 68 GLU n 1 69 LEU n 1 70 LYS n 1 71 THR n 1 72 LEU n 1 73 LEU n 1 74 ALA n 1 75 ILE n 1 76 GLY n 1 77 GLY n 1 78 TRP n 1 79 LYS n 1 80 PHE n 1 81 GLY n 1 82 PRO n 1 83 ALA n 1 84 PRO n 1 85 PHE n 1 86 SER n 1 87 ALA n 1 88 MET n 1 89 VAL n 1 90 SER n 1 91 THR n 1 92 PRO n 1 93 GLN n 1 94 ASN n 1 95 ARG n 1 96 GLN n 1 97 ILE n 1 98 PHE n 1 99 ILE n 1 100 GLN n 1 101 SER n 1 102 VAL n 1 103 ILE n 1 104 ARG n 1 105 PHE n 1 106 LEU n 1 107 ARG n 1 108 GLN n 1 109 TYR n 1 110 ASN n 1 111 PHE n 1 112 ASP n 1 113 GLY n 1 114 LEU n 1 115 ASN n 1 116 LEU n 1 117 ASP n 1 118 TRP n 1 119 GLN n 1 120 TYR n 1 121 PRO n 1 122 GLY n 1 123 SER n 1 124 ARG n 1 125 GLY n 1 126 SER n 1 127 PRO n 1 128 PRO n 1 129 LYS n 1 130 ASP n 1 131 LYS n 1 132 HIS n 1 133 LEU n 1 134 PHE n 1 135 SER n 1 136 VAL n 1 137 LEU n 1 138 VAL n 1 139 LYS n 1 140 GLU n 1 141 MET n 1 142 ARG n 1 143 LYS n 1 144 ALA n 1 145 PHE n 1 146 GLU n 1 147 GLU n 1 148 GLU n 1 149 SER n 1 150 VAL n 1 151 GLU n 1 152 LYS n 1 153 ASP n 1 154 ILE n 1 155 PRO n 1 156 ARG n 1 157 LEU n 1 158 LEU n 1 159 LEU n 1 160 THR n 1 161 SER n 1 162 THR n 1 163 GLY n 1 164 ALA n 1 165 GLY n 1 166 ILE n 1 167 ILE n 1 168 ASP n 1 169 VAL n 1 170 ILE n 1 171 LYS n 1 172 SER n 1 173 GLY n 1 174 TYR n 1 175 LYS n 1 176 ILE n 1 177 PRO n 1 178 GLU n 1 179 LEU n 1 180 SER n 1 181 GLN n 1 182 SER n 1 183 LEU n 1 184 ASP n 1 185 TYR n 1 186 ILE n 1 187 GLN n 1 188 VAL n 1 189 MET n 1 190 THR n 1 191 TYR n 1 192 ASP n 1 193 LEU n 1 194 HIS n 1 195 ASP n 1 196 PRO n 1 197 LYS n 1 198 ASP n 1 199 GLY n 1 200 TYR n 1 201 THR n 1 202 GLY n 1 203 GLU n 1 204 ASN n 1 205 SER n 1 206 PRO n 1 207 LEU n 1 208 TYR n 1 209 LYS n 1 210 SER n 1 211 PRO n 1 212 TYR n 1 213 ASP n 1 214 ILE n 1 215 GLY n 1 216 LYS n 1 217 SER n 1 218 ALA n 1 219 ASP n 1 220 LEU n 1 221 ASN n 1 222 VAL n 1 223 ASP n 1 224 SER n 1 225 ILE n 1 226 ILE n 1 227 SER n 1 228 TYR n 1 229 TRP n 1 230 LYS n 1 231 ASP n 1 232 HIS n 1 233 GLY n 1 234 ALA n 1 235 ALA n 1 236 SER n 1 237 GLU n 1 238 LYS n 1 239 LEU n 1 240 ILE n 1 241 VAL n 1 242 GLY n 1 243 PHE n 1 244 PRO n 1 245 ALA n 1 246 TYR n 1 247 GLY n 1 248 HIS n 1 249 THR n 1 250 PHE n 1 251 ILE n 1 252 LEU n 1 253 SER n 1 254 ASP n 1 255 PRO n 1 256 SER n 1 257 LYS n 1 258 THR n 1 259 GLY n 1 260 ILE n 1 261 GLY n 1 262 ALA n 1 263 PRO n 1 264 THR n 1 265 ILE n 1 266 SER n 1 267 THR n 1 268 GLY n 1 269 PRO n 1 270 PRO n 1 271 GLY n 1 272 LYS n 1 273 TYR n 1 274 THR n 1 275 ASP n 1 276 GLU n 1 277 SER n 1 278 GLY n 1 279 LEU n 1 280 LEU n 1 281 ALA n 1 282 TYR n 1 283 TYR n 1 284 GLU n 1 285 VAL n 1 286 CYS n 1 287 THR n 1 288 PHE n 1 289 LEU n 1 290 ASN n 1 291 GLU n 1 292 GLY n 1 293 ALA n 1 294 THR n 1 295 GLU n 1 296 VAL n 1 297 TRP n 1 298 ASP n 1 299 ALA n 1 300 PRO n 1 301 GLN n 1 302 GLU n 1 303 VAL n 1 304 PRO n 1 305 TYR n 1 306 ALA n 1 307 TYR n 1 308 GLN n 1 309 GLY n 1 310 ASN n 1 311 GLU n 1 312 TRP n 1 313 VAL n 1 314 GLY n 1 315 TYR n 1 316 ASP n 1 317 ASN n 1 318 VAL n 1 319 ARG n 1 320 SER n 1 321 PHE n 1 322 LYS n 1 323 LEU n 1 324 LYS n 1 325 ALA n 1 326 GLN n 1 327 TRP n 1 328 LEU n 1 329 LYS n 1 330 ASP n 1 331 ASN n 1 332 ASN n 1 333 LEU n 1 334 GLY n 1 335 GLY n 1 336 ALA n 1 337 VAL n 1 338 VAL n 1 339 TRP n 1 340 PRO n 1 341 LEU n 1 342 ASP n 1 343 MET n 1 344 ASP n 1 345 ASP n 1 346 PHE n 1 347 SER n 1 348 GLY n 1 349 SER n 1 350 PHE n 1 351 CYS n 1 352 HIS n 1 353 GLN n 1 354 ARG n 1 355 HIS n 1 356 PHE n 1 357 PRO n 1 358 LEU n 1 359 THR n 1 360 SER n 1 361 THR n 1 362 LEU n 1 363 LYS n 1 364 GLY n 1 365 ASP n 1 366 LEU n 1 367 ASN n 1 368 ILE n 1 369 HIS n 1 370 SER n 1 371 ALA n 1 372 SER n 1 373 CYS n 1 374 LYS n 1 375 GLY n 1 376 PRO n 1 377 TYR n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name 'HOUSE MOUSE' _entity_src_nat.pdbx_organism_scientific 'MUS MUSCULUS' _entity_src_nat.pdbx_ncbi_taxonomy_id 10090 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ICR _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location CYTOPLASM _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell 'PERITONEAL EXUDATE CELLS(MACROPHAGES)' _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details 'ORAL INFECTIONS OF MICE WITH TRICHINELLA SPIRALIS INDUCE PERITONEAL EXUDATE CELLS TO SECRETE YM1' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code O35744 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession O35744 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1E9L _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 377 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O35744 _struct_ref_seq.db_align_beg 22 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 399 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 22 _struct_ref_seq.pdbx_auth_seq_align_end 398 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GCS 'D-saccharide, beta linking' . 2-amino-2-deoxy-beta-D-glucopyranose 2-AMINO-2-DEOXY-D-GLUCOSE 'C6 H13 N O5' 179.171 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1E9L _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.19 _exptl_crystal.density_percent_sol 44 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.00 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'pH 6.00' # _diffrn.id 1 _diffrn.ambient_temp 290.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU IMAGE PLATE' _diffrn_detector.pdbx_collection_date 1997-01-15 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'NI FILTER' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU300' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1E9L _reflns.observed_criterion_sigma_I 2.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.000 _reflns.d_resolution_high 2.500 _reflns.number_obs 11644 _reflns.number_all ? _reflns.percent_possible_obs 94.2 _reflns.pdbx_Rmerge_I_obs 0.03900 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 15.3000 _reflns.B_iso_Wilson_estimate 21.2 _reflns.pdbx_redundancy 3.690 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.50 _reflns_shell.d_res_low 2.60 _reflns_shell.percent_possible_all 89.4 _reflns_shell.Rmerge_I_obs 0.21000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 5.150 _reflns_shell.pdbx_redundancy 2.80 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1E9L _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 11644 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF 10000000.00 _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.0 _refine.ls_d_res_high 2.5 _refine.ls_percent_reflns_obs 94.2 _refine.ls_R_factor_obs 0.198 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.198 _refine.ls_R_factor_R_free 0.272 _refine.ls_R_factor_R_free_error 0.008 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.9 _refine.ls_number_reflns_R_free 1154 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 14.6 _refine.aniso_B[1][1] 0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[3][3] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MIRAS _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 1E9L _refine_analyze.Luzzati_coordinate_error_obs 0.27 _refine_analyze.Luzzati_sigma_a_obs 0.32 _refine_analyze.Luzzati_d_res_low_obs 3.5 _refine_analyze.Luzzati_coordinate_error_free 0.36 _refine_analyze.Luzzati_sigma_a_free 0.38 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2944 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.number_atoms_solvent 214 _refine_hist.number_atoms_total 3170 _refine_hist.d_res_high 2.5 _refine_hist.d_res_low 20.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.4 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 27.8 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 0.71 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it 1.8 1.5 ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it 1.3 2.00 ? ? 'X-RAY DIFFRACTION' ? x_scbond_it 1.34 2.00 ? ? 'X-RAY DIFFRACTION' ? x_scangle_it 0.52 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.5 _refine_ls_shell.d_res_low 2.66 _refine_ls_shell.number_reflns_R_work 1568 _refine_ls_shell.R_factor_R_work 0.244 _refine_ls_shell.percent_reflns_obs 89.4 _refine_ls_shell.R_factor_R_free 0.328 _refine_ls_shell.R_factor_R_free_error 0.027 _refine_ls_shell.percent_reflns_R_free 8.6 _refine_ls_shell.number_reflns_R_free 147 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _pdbx_xplor_file.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_xplor_file.serial_no 1 _pdbx_xplor_file.param_file PARHCSDX.PRO _pdbx_xplor_file.topol_file TOPHCSDX.PRO # _struct.entry_id 1E9L _struct.title 'The crystal structure of novel mammalian lectin Ym1 suggests a saccharide binding site' _struct.pdbx_descriptor 'YM1 SECRETORY PROTEIN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1E9L _struct_keywords.pdbx_keywords 'MACROPHAGE SECRETORY PROTEIN' _struct_keywords.text 'MACROPHAGE SECRETORY PROTEIN, INFLAMMATION, LECTIN, INDUCIBLE, SECRETORY' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 8 ? LYS A 12 ? THR A 29 LYS A 33 5 ? 5 HELX_P HELX_P2 2 PRO A 15 ? SER A 19 ? PRO A 36 SER A 40 5 ? 5 HELX_P HELX_P3 3 LYS A 21 ? ILE A 25 ? LYS A 42 ILE A 46 5 ? 5 HELX_P HELX_P4 4 GLN A 51 ? GLY A 61 ? GLN A 72 GLY A 82 1 ? 11 HELX_P HELX_P5 5 LEU A 62 ? LYS A 65 ? LEU A 83 LYS A 86 5 ? 4 HELX_P HELX_P6 6 PRO A 82 ? SER A 90 ? PRO A 103 SER A 111 1 ? 9 HELX_P HELX_P7 7 THR A 91 ? TYR A 109 ? THR A 112 TYR A 130 1 ? 19 HELX_P HELX_P8 8 PRO A 128 ? LYS A 152 ? PRO A 149 LYS A 173 1 ? 25 HELX_P HELX_P9 9 ILE A 166 ? TYR A 174 ? ILE A 187 TYR A 195 1 ? 9 HELX_P HELX_P10 10 LYS A 175 ? LEU A 183 ? LYS A 196 LEU A 204 1 ? 9 HELX_P HELX_P11 11 ASP A 195 ? GLY A 199 ? ASP A 216 GLY A 220 5 ? 5 HELX_P HELX_P12 12 ILE A 214 ? LEU A 220 ? ILE A 235 LEU A 241 5 ? 7 HELX_P HELX_P13 13 ASN A 221 ? HIS A 232 ? ASN A 242 HIS A 253 1 ? 12 HELX_P HELX_P14 14 ALA A 235 ? GLU A 237 ? ALA A 256 GLU A 258 5 ? 3 HELX_P HELX_P15 15 TYR A 282 ? GLU A 291 ? TYR A 303 GLU A 312 1 ? 10 HELX_P HELX_P16 16 ASN A 317 ? LEU A 328 ? ASN A 338 LEU A 349 1 ? 12 HELX_P HELX_P17 17 PRO A 340 ? ASP A 344 ? PRO A 361 ASP A 365 5 ? 5 HELX_P HELX_P18 18 PHE A 356 ? LEU A 366 ? PHE A 377 LEU A 387 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 5 SG ? ? ? 1_555 A CYS 30 SG ? ? A CYS 26 A CYS 51 1_555 ? ? ? ? ? ? ? 2.021 ? ? disulf2 disulf ? ? A CYS 286 SG ? ? ? 1_555 A CYS 351 SG ? ? A CYS 307 A CYS 372 1_555 ? ? ? ? ? ? ? 2.024 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id TRP _struct_mon_prot_cis.label_seq_id 339 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id TRP _struct_mon_prot_cis.auth_seq_id 360 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 340 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 361 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.21 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 8 ? B ? 3 ? B1 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? parallel A 7 8 ? parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B1 1 2 ? anti-parallel B1 2 3 ? anti-parallel B1 3 4 ? anti-parallel B1 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 2 ? TYR A 7 ? GLN A 23 TYR A 28 A 2 GLY A 335 ? TRP A 339 ? GLY A 356 TRP A 360 A 3 LEU A 239 ? PRO A 244 ? LEU A 260 PRO A 265 A 4 TYR A 185 ? VAL A 188 ? TYR A 206 VAL A 209 A 5 LEU A 158 ? GLY A 163 ? LEU A 179 GLY A 184 A 6 GLY A 113 ? TRP A 118 ? GLY A 134 TRP A 139 A 7 LYS A 70 ? GLY A 77 ? LYS A 91 GLY A 98 A 8 HIS A 32 ? MET A 40 ? HIS A 53 MET A 61 B 1 THR A 264 ? THR A 267 ? THR A 285 THR A 288 B 2 TYR A 246 ? LEU A 252 ? TYR A 267 LEU A 273 B 3 LEU A 279 ? ALA A 281 ? LEU A 300 ALA A 302 B1 1 THR A 264 ? THR A 267 ? THR A 285 THR A 288 B1 2 TYR A 246 ? LEU A 252 ? TYR A 267 LEU A 273 B1 3 GLU A 311 ? GLY A 314 ? GLU A 332 GLY A 335 B1 4 VAL A 303 ? GLN A 308 ? VAL A 324 GLN A 329 B1 5 THR A 294 ? ASP A 298 ? THR A 315 ASP A 319 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N MET A 4 ? N MET A 25 O ALA A 336 ? O ALA A 357 A 2 3 N GLY A 335 ? N GLY A 356 O LEU A 239 ? O LEU A 260 A 3 4 N ILE A 240 ? N ILE A 261 O ILE A 186 ? O ILE A 207 A 4 5 N GLN A 187 ? N GLN A 208 O SER A 161 ? O SER A 182 A 5 6 N THR A 160 ? N THR A 181 O LEU A 114 ? O LEU A 135 A 6 7 N ASN A 115 ? N ASN A 136 O LEU A 73 ? O LEU A 94 A 7 8 N LEU A 72 ? N LEU A 93 O LEU A 33 ? O LEU A 54 B 1 2 N ILE A 265 ? N ILE A 286 O ILE A 251 ? O ILE A 272 B 2 3 N GLY A 247 ? N GLY A 268 O LEU A 280 ? O LEU A 301 B1 1 2 N ILE A 265 ? N ILE A 286 O ILE A 251 ? O ILE A 272 B1 2 3 N PHE A 250 ? N PHE A 271 O TRP A 312 ? O TRP A 333 B1 3 4 N VAL A 313 ? N VAL A 334 O ALA A 306 ? O ALA A 327 B1 4 5 N TYR A 307 ? N TYR A 328 O THR A 294 ? O THR A 315 # _database_PDB_matrix.entry_id 1E9L _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1E9L _atom_sites.fract_transf_matrix[1][1] 0.019478 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001570 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016485 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016512 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 TYR 1 22 22 TYR TYR A . n A 1 2 GLN 2 23 23 GLN GLN A . n A 1 3 LEU 3 24 24 LEU LEU A . n A 1 4 MET 4 25 25 MET MET A . n A 1 5 CYS 5 26 26 CYS CYS A . n A 1 6 TYR 6 27 27 TYR TYR A . n A 1 7 TYR 7 28 28 TYR TYR A . n A 1 8 THR 8 29 29 THR THR A . n A 1 9 SER 9 30 30 SER SER A . n A 1 10 TRP 10 31 31 TRP TRP A . n A 1 11 ALA 11 32 32 ALA ALA A . n A 1 12 LYS 12 33 33 LYS LYS A . n A 1 13 ASP 13 34 34 ASP ASP A . n A 1 14 ARG 14 35 35 ARG ARG A . n A 1 15 PRO 15 36 36 PRO PRO A . n A 1 16 ILE 16 37 37 ILE ILE A . n A 1 17 GLU 17 38 38 GLU GLU A . n A 1 18 GLY 18 39 39 GLY GLY A . n A 1 19 SER 19 40 40 SER SER A . n A 1 20 PHE 20 41 41 PHE PHE A . n A 1 21 LYS 21 42 42 LYS LYS A . n A 1 22 PRO 22 43 43 PRO PRO A . n A 1 23 GLY 23 44 44 GLY GLY A . n A 1 24 ASN 24 45 45 ASN ASN A . n A 1 25 ILE 25 46 46 ILE ILE A . n A 1 26 ASP 26 47 47 ASP ASP A . n A 1 27 PRO 27 48 48 PRO PRO A . n A 1 28 CYS 28 49 49 CYS CYS A . n A 1 29 LEU 29 50 50 LEU LEU A . n A 1 30 CYS 30 51 51 CYS CYS A . n A 1 31 THR 31 52 52 THR THR A . n A 1 32 HIS 32 53 53 HIS HIS A . n A 1 33 LEU 33 54 54 LEU LEU A . n A 1 34 ILE 34 55 55 ILE ILE A . n A 1 35 TYR 35 56 56 TYR TYR A . n A 1 36 ALA 36 57 57 ALA ALA A . n A 1 37 PHE 37 58 58 PHE PHE A . n A 1 38 ALA 38 59 59 ALA ALA A . n A 1 39 GLY 39 60 60 GLY GLY A . n A 1 40 MET 40 61 61 MET MET A . n A 1 41 GLN 41 62 62 GLN GLN A . n A 1 42 ASN 42 63 63 ASN ASN A . n A 1 43 ASN 43 64 64 ASN ASN A . n A 1 44 GLU 44 65 65 GLU GLU A . n A 1 45 ILE 45 66 66 ILE ILE A . n A 1 46 THR 46 67 67 THR THR A . n A 1 47 TYR 47 68 68 TYR TYR A . n A 1 48 THR 48 69 69 THR THR A . n A 1 49 HIS 49 70 70 HIS HIS A . n A 1 50 GLU 50 71 71 GLU GLU A . n A 1 51 GLN 51 72 72 GLN GLN A . n A 1 52 ASP 52 73 73 ASP ASP A . n A 1 53 LEU 53 74 74 LEU LEU A . n A 1 54 ARG 54 75 75 ARG ARG A . n A 1 55 ASP 55 76 76 ASP ASP A . n A 1 56 TYR 56 77 77 TYR TYR A . n A 1 57 GLU 57 78 78 GLU GLU A . n A 1 58 ALA 58 79 79 ALA ALA A . n A 1 59 LEU 59 80 80 LEU LEU A . n A 1 60 ASN 60 81 81 ASN ASN A . n A 1 61 GLY 61 82 82 GLY GLY A . n A 1 62 LEU 62 83 83 LEU LEU A . n A 1 63 LYS 63 84 84 LYS LYS A . n A 1 64 ASP 64 85 85 ASP ASP A . n A 1 65 LYS 65 86 86 LYS LYS A . n A 1 66 ASN 66 87 87 ASN ASN A . n A 1 67 THR 67 88 88 THR THR A . n A 1 68 GLU 68 89 89 GLU GLU A . n A 1 69 LEU 69 90 90 LEU LEU A . n A 1 70 LYS 70 91 91 LYS LYS A . n A 1 71 THR 71 92 92 THR THR A . n A 1 72 LEU 72 93 93 LEU LEU A . n A 1 73 LEU 73 94 94 LEU LEU A . n A 1 74 ALA 74 95 95 ALA ALA A . n A 1 75 ILE 75 96 96 ILE ILE A . n A 1 76 GLY 76 97 97 GLY GLY A . n A 1 77 GLY 77 98 98 GLY GLY A . n A 1 78 TRP 78 99 99 TRP TRP A . n A 1 79 LYS 79 100 100 LYS LYS A . n A 1 80 PHE 80 101 101 PHE PHE A . n A 1 81 GLY 81 102 102 GLY GLY A . n A 1 82 PRO 82 103 103 PRO PRO A . n A 1 83 ALA 83 104 104 ALA ALA A . n A 1 84 PRO 84 105 105 PRO PRO A . n A 1 85 PHE 85 106 106 PHE PHE A . n A 1 86 SER 86 107 107 SER SER A . n A 1 87 ALA 87 108 108 ALA ALA A . n A 1 88 MET 88 109 109 MET MET A . n A 1 89 VAL 89 110 110 VAL VAL A . n A 1 90 SER 90 111 111 SER SER A . n A 1 91 THR 91 112 112 THR THR A . n A 1 92 PRO 92 113 113 PRO PRO A . n A 1 93 GLN 93 114 114 GLN GLN A . n A 1 94 ASN 94 115 115 ASN ASN A . n A 1 95 ARG 95 116 116 ARG ARG A . n A 1 96 GLN 96 117 117 GLN GLN A . n A 1 97 ILE 97 118 118 ILE ILE A . n A 1 98 PHE 98 119 119 PHE PHE A . n A 1 99 ILE 99 120 120 ILE ILE A . n A 1 100 GLN 100 121 121 GLN GLN A . n A 1 101 SER 101 122 122 SER SER A . n A 1 102 VAL 102 123 123 VAL VAL A . n A 1 103 ILE 103 124 124 ILE ILE A . n A 1 104 ARG 104 125 125 ARG ARG A . n A 1 105 PHE 105 126 126 PHE PHE A . n A 1 106 LEU 106 127 127 LEU LEU A . n A 1 107 ARG 107 128 128 ARG ARG A . n A 1 108 GLN 108 129 129 GLN GLN A . n A 1 109 TYR 109 130 130 TYR TYR A . n A 1 110 ASN 110 131 131 ASN ASN A . n A 1 111 PHE 111 132 132 PHE PHE A . n A 1 112 ASP 112 133 133 ASP ASP A . n A 1 113 GLY 113 134 134 GLY GLY A . n A 1 114 LEU 114 135 135 LEU LEU A . n A 1 115 ASN 115 136 136 ASN ASN A . n A 1 116 LEU 116 137 137 LEU LEU A . n A 1 117 ASP 117 138 138 ASP ASP A . n A 1 118 TRP 118 139 139 TRP TRP A . n A 1 119 GLN 119 140 140 GLN GLN A . n A 1 120 TYR 120 141 141 TYR TYR A . n A 1 121 PRO 121 142 142 PRO PRO A . n A 1 122 GLY 122 143 143 GLY GLY A . n A 1 123 SER 123 144 144 SER SER A . n A 1 124 ARG 124 145 145 ARG ARG A . n A 1 125 GLY 125 146 146 GLY GLY A . n A 1 126 SER 126 147 147 SER SER A . n A 1 127 PRO 127 148 148 PRO PRO A . n A 1 128 PRO 128 149 149 PRO PRO A . n A 1 129 LYS 129 150 150 LYS LYS A . n A 1 130 ASP 130 151 151 ASP ASP A . n A 1 131 LYS 131 152 152 LYS LYS A . n A 1 132 HIS 132 153 153 HIS HIS A . n A 1 133 LEU 133 154 154 LEU LEU A . n A 1 134 PHE 134 155 155 PHE PHE A . n A 1 135 SER 135 156 156 SER SER A . n A 1 136 VAL 136 157 157 VAL VAL A . n A 1 137 LEU 137 158 158 LEU LEU A . n A 1 138 VAL 138 159 159 VAL VAL A . n A 1 139 LYS 139 160 160 LYS LYS A . n A 1 140 GLU 140 161 161 GLU GLU A . n A 1 141 MET 141 162 162 MET MET A . n A 1 142 ARG 142 163 163 ARG ARG A . n A 1 143 LYS 143 164 164 LYS LYS A . n A 1 144 ALA 144 165 165 ALA ALA A . n A 1 145 PHE 145 166 166 PHE PHE A . n A 1 146 GLU 146 167 167 GLU GLU A . n A 1 147 GLU 147 168 168 GLU GLU A . n A 1 148 GLU 148 169 169 GLU GLU A . n A 1 149 SER 149 170 170 SER SER A . n A 1 150 VAL 150 171 171 VAL VAL A . n A 1 151 GLU 151 172 172 GLU GLU A . n A 1 152 LYS 152 173 173 LYS LYS A . n A 1 153 ASP 153 174 174 ASP ASP A . n A 1 154 ILE 154 175 175 ILE ILE A . n A 1 155 PRO 155 176 176 PRO PRO A . n A 1 156 ARG 156 177 177 ARG ARG A . n A 1 157 LEU 157 178 178 LEU LEU A . n A 1 158 LEU 158 179 179 LEU LEU A . n A 1 159 LEU 159 180 180 LEU LEU A . n A 1 160 THR 160 181 181 THR THR A . n A 1 161 SER 161 182 182 SER SER A . n A 1 162 THR 162 183 183 THR THR A . n A 1 163 GLY 163 184 184 GLY GLY A . n A 1 164 ALA 164 185 185 ALA ALA A . n A 1 165 GLY 165 186 186 GLY GLY A . n A 1 166 ILE 166 187 187 ILE ILE A . n A 1 167 ILE 167 188 188 ILE ILE A . n A 1 168 ASP 168 189 189 ASP ASP A . n A 1 169 VAL 169 190 190 VAL VAL A . n A 1 170 ILE 170 191 191 ILE ILE A . n A 1 171 LYS 171 192 192 LYS LYS A . n A 1 172 SER 172 193 193 SER SER A . n A 1 173 GLY 173 194 194 GLY GLY A . n A 1 174 TYR 174 195 195 TYR TYR A . n A 1 175 LYS 175 196 196 LYS LYS A . n A 1 176 ILE 176 197 197 ILE ILE A . n A 1 177 PRO 177 198 198 PRO PRO A . n A 1 178 GLU 178 199 199 GLU GLU A . n A 1 179 LEU 179 200 200 LEU LEU A . n A 1 180 SER 180 201 201 SER SER A . n A 1 181 GLN 181 202 202 GLN GLN A . n A 1 182 SER 182 203 203 SER SER A . n A 1 183 LEU 183 204 204 LEU LEU A . n A 1 184 ASP 184 205 205 ASP ASP A . n A 1 185 TYR 185 206 206 TYR TYR A . n A 1 186 ILE 186 207 207 ILE ILE A . n A 1 187 GLN 187 208 208 GLN GLN A . n A 1 188 VAL 188 209 209 VAL VAL A . n A 1 189 MET 189 210 210 MET MET A . n A 1 190 THR 190 211 211 THR THR A . n A 1 191 TYR 191 212 212 TYR TYR A . n A 1 192 ASP 192 213 213 ASP ASP A . n A 1 193 LEU 193 214 214 LEU LEU A . n A 1 194 HIS 194 215 215 HIS HIS A . n A 1 195 ASP 195 216 216 ASP ASP A . n A 1 196 PRO 196 217 217 PRO PRO A . n A 1 197 LYS 197 218 218 LYS LYS A . n A 1 198 ASP 198 219 219 ASP ASP A . n A 1 199 GLY 199 220 220 GLY GLY A . n A 1 200 TYR 200 221 221 TYR TYR A . n A 1 201 THR 201 222 222 THR THR A . n A 1 202 GLY 202 223 223 GLY GLY A . n A 1 203 GLU 203 224 224 GLU GLU A . n A 1 204 ASN 204 225 225 ASN ASN A . n A 1 205 SER 205 226 226 SER SER A . n A 1 206 PRO 206 227 227 PRO PRO A . n A 1 207 LEU 207 228 228 LEU LEU A . n A 1 208 TYR 208 229 229 TYR TYR A . n A 1 209 LYS 209 230 230 LYS LYS A . n A 1 210 SER 210 231 231 SER SER A . n A 1 211 PRO 211 232 232 PRO PRO A . n A 1 212 TYR 212 233 233 TYR TYR A . n A 1 213 ASP 213 234 234 ASP ASP A . n A 1 214 ILE 214 235 235 ILE ILE A . n A 1 215 GLY 215 236 236 GLY GLY A . n A 1 216 LYS 216 237 237 LYS LYS A . n A 1 217 SER 217 238 238 SER SER A . n A 1 218 ALA 218 239 239 ALA ALA A . n A 1 219 ASP 219 240 240 ASP ASP A . n A 1 220 LEU 220 241 241 LEU LEU A . n A 1 221 ASN 221 242 242 ASN ASN A . n A 1 222 VAL 222 243 243 VAL VAL A . n A 1 223 ASP 223 244 244 ASP ASP A . n A 1 224 SER 224 245 245 SER SER A . n A 1 225 ILE 225 246 246 ILE ILE A . n A 1 226 ILE 226 247 247 ILE ILE A . n A 1 227 SER 227 248 248 SER SER A . n A 1 228 TYR 228 249 249 TYR TYR A . n A 1 229 TRP 229 250 250 TRP TRP A . n A 1 230 LYS 230 251 251 LYS LYS A . n A 1 231 ASP 231 252 252 ASP ASP A . n A 1 232 HIS 232 253 253 HIS HIS A . n A 1 233 GLY 233 254 254 GLY GLY A . n A 1 234 ALA 234 255 255 ALA ALA A . n A 1 235 ALA 235 256 256 ALA ALA A . n A 1 236 SER 236 257 257 SER SER A . n A 1 237 GLU 237 258 258 GLU GLU A . n A 1 238 LYS 238 259 259 LYS LYS A . n A 1 239 LEU 239 260 260 LEU LEU A . n A 1 240 ILE 240 261 261 ILE ILE A . n A 1 241 VAL 241 262 262 VAL VAL A . n A 1 242 GLY 242 263 263 GLY GLY A . n A 1 243 PHE 243 264 264 PHE PHE A . n A 1 244 PRO 244 265 265 PRO PRO A . n A 1 245 ALA 245 266 266 ALA ALA A . n A 1 246 TYR 246 267 267 TYR TYR A . n A 1 247 GLY 247 268 268 GLY GLY A . n A 1 248 HIS 248 269 269 HIS HIS A . n A 1 249 THR 249 270 270 THR THR A . n A 1 250 PHE 250 271 271 PHE PHE A . n A 1 251 ILE 251 272 272 ILE ILE A . n A 1 252 LEU 252 273 273 LEU LEU A . n A 1 253 SER 253 274 274 SER SER A . n A 1 254 ASP 254 275 275 ASP ASP A . n A 1 255 PRO 255 276 276 PRO PRO A . n A 1 256 SER 256 277 277 SER SER A . n A 1 257 LYS 257 278 278 LYS LYS A . n A 1 258 THR 258 279 279 THR THR A . n A 1 259 GLY 259 280 280 GLY GLY A . n A 1 260 ILE 260 281 281 ILE ILE A . n A 1 261 GLY 261 282 282 GLY GLY A . n A 1 262 ALA 262 283 283 ALA ALA A . n A 1 263 PRO 263 284 284 PRO PRO A . n A 1 264 THR 264 285 285 THR THR A . n A 1 265 ILE 265 286 286 ILE ILE A . n A 1 266 SER 266 287 287 SER SER A . n A 1 267 THR 267 288 288 THR THR A . n A 1 268 GLY 268 289 289 GLY GLY A . n A 1 269 PRO 269 290 290 PRO PRO A . n A 1 270 PRO 270 291 291 PRO PRO A . n A 1 271 GLY 271 292 292 GLY GLY A . n A 1 272 LYS 272 293 293 LYS LYS A . n A 1 273 TYR 273 294 294 TYR TYR A . n A 1 274 THR 274 295 295 THR THR A . n A 1 275 ASP 275 296 296 ASP ASP A . n A 1 276 GLU 276 297 297 GLU GLU A . n A 1 277 SER 277 298 298 SER SER A . n A 1 278 GLY 278 299 299 GLY GLY A . n A 1 279 LEU 279 300 300 LEU LEU A . n A 1 280 LEU 280 301 301 LEU LEU A . n A 1 281 ALA 281 302 302 ALA ALA A . n A 1 282 TYR 282 303 303 TYR TYR A . n A 1 283 TYR 283 304 304 TYR TYR A . n A 1 284 GLU 284 305 305 GLU GLU A . n A 1 285 VAL 285 306 306 VAL VAL A . n A 1 286 CYS 286 307 307 CYS CYS A . n A 1 287 THR 287 308 308 THR THR A . n A 1 288 PHE 288 309 309 PHE PHE A . n A 1 289 LEU 289 310 310 LEU LEU A . n A 1 290 ASN 290 311 311 ASN ASN A . n A 1 291 GLU 291 312 312 GLU GLU A . n A 1 292 GLY 292 313 313 GLY GLY A . n A 1 293 ALA 293 314 314 ALA ALA A . n A 1 294 THR 294 315 315 THR THR A . n A 1 295 GLU 295 316 316 GLU GLU A . n A 1 296 VAL 296 317 317 VAL VAL A . n A 1 297 TRP 297 318 318 TRP TRP A . n A 1 298 ASP 298 319 319 ASP ASP A . n A 1 299 ALA 299 320 320 ALA ALA A . n A 1 300 PRO 300 321 321 PRO PRO A . n A 1 301 GLN 301 322 322 GLN GLN A . n A 1 302 GLU 302 323 323 GLU GLU A . n A 1 303 VAL 303 324 324 VAL VAL A . n A 1 304 PRO 304 325 325 PRO PRO A . n A 1 305 TYR 305 326 326 TYR TYR A . n A 1 306 ALA 306 327 327 ALA ALA A . n A 1 307 TYR 307 328 328 TYR TYR A . n A 1 308 GLN 308 329 329 GLN GLN A . n A 1 309 GLY 309 330 330 GLY GLY A . n A 1 310 ASN 310 331 331 ASN ASN A . n A 1 311 GLU 311 332 332 GLU GLU A . n A 1 312 TRP 312 333 333 TRP TRP A . n A 1 313 VAL 313 334 334 VAL VAL A . n A 1 314 GLY 314 335 335 GLY GLY A . n A 1 315 TYR 315 336 336 TYR TYR A . n A 1 316 ASP 316 337 337 ASP ASP A . n A 1 317 ASN 317 338 338 ASN ASN A . n A 1 318 VAL 318 339 339 VAL VAL A . n A 1 319 ARG 319 340 340 ARG ARG A . n A 1 320 SER 320 341 341 SER SER A . n A 1 321 PHE 321 342 342 PHE PHE A . n A 1 322 LYS 322 343 343 LYS LYS A . n A 1 323 LEU 323 344 344 LEU LEU A . n A 1 324 LYS 324 345 345 LYS LYS A . n A 1 325 ALA 325 346 346 ALA ALA A . n A 1 326 GLN 326 347 347 GLN GLN A . n A 1 327 TRP 327 348 348 TRP TRP A . n A 1 328 LEU 328 349 349 LEU LEU A . n A 1 329 LYS 329 350 350 LYS LYS A . n A 1 330 ASP 330 351 351 ASP ASP A . n A 1 331 ASN 331 352 352 ASN ASN A . n A 1 332 ASN 332 353 353 ASN ASN A . n A 1 333 LEU 333 354 354 LEU LEU A . n A 1 334 GLY 334 355 355 GLY GLY A . n A 1 335 GLY 335 356 356 GLY GLY A . n A 1 336 ALA 336 357 357 ALA ALA A . n A 1 337 VAL 337 358 358 VAL VAL A . n A 1 338 VAL 338 359 359 VAL VAL A . n A 1 339 TRP 339 360 360 TRP TRP A . n A 1 340 PRO 340 361 361 PRO PRO A . n A 1 341 LEU 341 362 362 LEU LEU A . n A 1 342 ASP 342 363 363 ASP ASP A . n A 1 343 MET 343 364 364 MET MET A . n A 1 344 ASP 344 365 365 ASP ASP A . n A 1 345 ASP 345 366 366 ASP ASP A . n A 1 346 PHE 346 367 367 PHE PHE A . n A 1 347 SER 347 368 368 SER SER A . n A 1 348 GLY 348 369 369 GLY GLY A . n A 1 349 SER 349 370 370 SER SER A . n A 1 350 PHE 350 371 371 PHE PHE A . n A 1 351 CYS 351 372 372 CYS CYS A . n A 1 352 HIS 352 373 373 HIS HIS A . n A 1 353 GLN 353 374 374 GLN GLN A . n A 1 354 ARG 354 375 375 ARG ARG A . n A 1 355 HIS 355 376 376 HIS HIS A . n A 1 356 PHE 356 377 377 PHE PHE A . n A 1 357 PRO 357 378 378 PRO PRO A . n A 1 358 LEU 358 379 379 LEU LEU A . n A 1 359 THR 359 380 380 THR THR A . n A 1 360 SER 360 381 381 SER SER A . n A 1 361 THR 361 382 382 THR THR A . n A 1 362 LEU 362 383 383 LEU LEU A . n A 1 363 LYS 363 384 384 LYS LYS A . n A 1 364 GLY 364 385 385 GLY GLY A . n A 1 365 ASP 365 386 386 ASP ASP A . n A 1 366 LEU 366 387 387 LEU LEU A . n A 1 367 ASN 367 388 388 ASN ASN A . n A 1 368 ILE 368 389 389 ILE ILE A . n A 1 369 HIS 369 390 390 HIS HIS A . n A 1 370 SER 370 391 391 SER SER A . n A 1 371 ALA 371 392 392 ALA ALA A . n A 1 372 SER 372 393 393 SER SER A . n A 1 373 CYS 373 394 ? ? ? A . n A 1 374 LYS 374 395 ? ? ? A . n A 1 375 GLY 375 396 ? ? ? A . n A 1 376 PRO 376 397 ? ? ? A . n A 1 377 TYR 377 398 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GCS 1 800 800 GCS GCS A . C 3 HOH 1 2001 2001 HOH HOH A . C 3 HOH 2 2002 2002 HOH HOH A . C 3 HOH 3 2003 2003 HOH HOH A . C 3 HOH 4 2004 2004 HOH HOH A . C 3 HOH 5 2005 2005 HOH HOH A . C 3 HOH 6 2006 2006 HOH HOH A . C 3 HOH 7 2007 2007 HOH HOH A . C 3 HOH 8 2008 2008 HOH HOH A . C 3 HOH 9 2009 2009 HOH HOH A . C 3 HOH 10 2010 2010 HOH HOH A . C 3 HOH 11 2011 2011 HOH HOH A . C 3 HOH 12 2012 2012 HOH HOH A . C 3 HOH 13 2013 2013 HOH HOH A . C 3 HOH 14 2014 2014 HOH HOH A . C 3 HOH 15 2015 2015 HOH HOH A . C 3 HOH 16 2016 2016 HOH HOH A . C 3 HOH 17 2017 2017 HOH HOH A . C 3 HOH 18 2018 2018 HOH HOH A . C 3 HOH 19 2019 2019 HOH HOH A . C 3 HOH 20 2020 2020 HOH HOH A . C 3 HOH 21 2021 2021 HOH HOH A . C 3 HOH 22 2022 2022 HOH HOH A . C 3 HOH 23 2023 2023 HOH HOH A . C 3 HOH 24 2024 2024 HOH HOH A . C 3 HOH 25 2025 2025 HOH HOH A . C 3 HOH 26 2026 2026 HOH HOH A . C 3 HOH 27 2027 2027 HOH HOH A . C 3 HOH 28 2028 2028 HOH HOH A . C 3 HOH 29 2029 2029 HOH HOH A . C 3 HOH 30 2030 2030 HOH HOH A . C 3 HOH 31 2031 2031 HOH HOH A . C 3 HOH 32 2032 2032 HOH HOH A . C 3 HOH 33 2033 2033 HOH HOH A . C 3 HOH 34 2034 2034 HOH HOH A . C 3 HOH 35 2035 2035 HOH HOH A . C 3 HOH 36 2036 2036 HOH HOH A . C 3 HOH 37 2037 2037 HOH HOH A . C 3 HOH 38 2038 2038 HOH HOH A . C 3 HOH 39 2039 2039 HOH HOH A . C 3 HOH 40 2040 2040 HOH HOH A . C 3 HOH 41 2041 2041 HOH HOH A . C 3 HOH 42 2042 2042 HOH HOH A . C 3 HOH 43 2043 2043 HOH HOH A . C 3 HOH 44 2044 2044 HOH HOH A . C 3 HOH 45 2045 2045 HOH HOH A . C 3 HOH 46 2046 2046 HOH HOH A . C 3 HOH 47 2047 2047 HOH HOH A . C 3 HOH 48 2048 2048 HOH HOH A . C 3 HOH 49 2049 2049 HOH HOH A . C 3 HOH 50 2050 2050 HOH HOH A . C 3 HOH 51 2051 2051 HOH HOH A . C 3 HOH 52 2052 2052 HOH HOH A . C 3 HOH 53 2053 2053 HOH HOH A . C 3 HOH 54 2054 2054 HOH HOH A . C 3 HOH 55 2055 2055 HOH HOH A . C 3 HOH 56 2056 2056 HOH HOH A . C 3 HOH 57 2057 2057 HOH HOH A . C 3 HOH 58 2058 2058 HOH HOH A . C 3 HOH 59 2059 2059 HOH HOH A . C 3 HOH 60 2060 2060 HOH HOH A . C 3 HOH 61 2061 2061 HOH HOH A . C 3 HOH 62 2062 2062 HOH HOH A . C 3 HOH 63 2063 2063 HOH HOH A . C 3 HOH 64 2064 2064 HOH HOH A . C 3 HOH 65 2065 2065 HOH HOH A . C 3 HOH 66 2066 2066 HOH HOH A . C 3 HOH 67 2067 2067 HOH HOH A . C 3 HOH 68 2068 2068 HOH HOH A . C 3 HOH 69 2069 2069 HOH HOH A . C 3 HOH 70 2070 2070 HOH HOH A . C 3 HOH 71 2071 2071 HOH HOH A . C 3 HOH 72 2072 2072 HOH HOH A . C 3 HOH 73 2073 2073 HOH HOH A . C 3 HOH 74 2074 2074 HOH HOH A . C 3 HOH 75 2075 2075 HOH HOH A . C 3 HOH 76 2076 2076 HOH HOH A . C 3 HOH 77 2077 2077 HOH HOH A . C 3 HOH 78 2078 2078 HOH HOH A . C 3 HOH 79 2079 2079 HOH HOH A . C 3 HOH 80 2080 2080 HOH HOH A . C 3 HOH 81 2081 2081 HOH HOH A . C 3 HOH 82 2082 2082 HOH HOH A . C 3 HOH 83 2083 2083 HOH HOH A . C 3 HOH 84 2084 2084 HOH HOH A . C 3 HOH 85 2085 2085 HOH HOH A . C 3 HOH 86 2086 2086 HOH HOH A . C 3 HOH 87 2087 2087 HOH HOH A . C 3 HOH 88 2088 2088 HOH HOH A . C 3 HOH 89 2089 2089 HOH HOH A . C 3 HOH 90 2090 2090 HOH HOH A . C 3 HOH 91 2091 2091 HOH HOH A . C 3 HOH 92 2092 2092 HOH HOH A . C 3 HOH 93 2093 2093 HOH HOH A . C 3 HOH 94 2094 2094 HOH HOH A . C 3 HOH 95 2095 2095 HOH HOH A . C 3 HOH 96 2096 2096 HOH HOH A . C 3 HOH 97 2097 2097 HOH HOH A . C 3 HOH 98 2098 2098 HOH HOH A . C 3 HOH 99 2099 2099 HOH HOH A . C 3 HOH 100 2100 2100 HOH HOH A . C 3 HOH 101 2101 2101 HOH HOH A . C 3 HOH 102 2102 2102 HOH HOH A . C 3 HOH 103 2103 2103 HOH HOH A . C 3 HOH 104 2104 2104 HOH HOH A . C 3 HOH 105 2105 2105 HOH HOH A . C 3 HOH 106 2106 2106 HOH HOH A . C 3 HOH 107 2107 2107 HOH HOH A . C 3 HOH 108 2108 2108 HOH HOH A . C 3 HOH 109 2109 2109 HOH HOH A . C 3 HOH 110 2110 2110 HOH HOH A . C 3 HOH 111 2111 2111 HOH HOH A . C 3 HOH 112 2112 2112 HOH HOH A . C 3 HOH 113 2113 2113 HOH HOH A . C 3 HOH 114 2114 2114 HOH HOH A . C 3 HOH 115 2115 2115 HOH HOH A . C 3 HOH 116 2116 2116 HOH HOH A . C 3 HOH 117 2117 2117 HOH HOH A . C 3 HOH 118 2118 2118 HOH HOH A . C 3 HOH 119 2119 2119 HOH HOH A . C 3 HOH 120 2120 2120 HOH HOH A . C 3 HOH 121 2121 2121 HOH HOH A . C 3 HOH 122 2122 2122 HOH HOH A . C 3 HOH 123 2123 2123 HOH HOH A . C 3 HOH 124 2124 2124 HOH HOH A . C 3 HOH 125 2125 2125 HOH HOH A . C 3 HOH 126 2126 2126 HOH HOH A . C 3 HOH 127 2127 2127 HOH HOH A . C 3 HOH 128 2128 2128 HOH HOH A . C 3 HOH 129 2129 2129 HOH HOH A . C 3 HOH 130 2130 2130 HOH HOH A . C 3 HOH 131 2131 2131 HOH HOH A . C 3 HOH 132 2132 2132 HOH HOH A . C 3 HOH 133 2133 2133 HOH HOH A . C 3 HOH 134 2134 2134 HOH HOH A . C 3 HOH 135 2135 2135 HOH HOH A . C 3 HOH 136 2136 2136 HOH HOH A . C 3 HOH 137 2137 2137 HOH HOH A . C 3 HOH 138 2138 2138 HOH HOH A . C 3 HOH 139 2139 2139 HOH HOH A . C 3 HOH 140 2140 2140 HOH HOH A . C 3 HOH 141 2141 2141 HOH HOH A . C 3 HOH 142 2142 2142 HOH HOH A . C 3 HOH 143 2143 2143 HOH HOH A . C 3 HOH 144 2144 2144 HOH HOH A . C 3 HOH 145 2145 2145 HOH HOH A . C 3 HOH 146 2146 2146 HOH HOH A . C 3 HOH 147 2147 2147 HOH HOH A . C 3 HOH 148 2148 2148 HOH HOH A . C 3 HOH 149 2149 2149 HOH HOH A . C 3 HOH 150 2150 2150 HOH HOH A . C 3 HOH 151 2151 2151 HOH HOH A . C 3 HOH 152 2152 2152 HOH HOH A . C 3 HOH 153 2153 2153 HOH HOH A . C 3 HOH 154 2154 2154 HOH HOH A . C 3 HOH 155 2155 2155 HOH HOH A . C 3 HOH 156 2156 2156 HOH HOH A . C 3 HOH 157 2157 2157 HOH HOH A . C 3 HOH 158 2158 2158 HOH HOH A . C 3 HOH 159 2159 2159 HOH HOH A . C 3 HOH 160 2160 2160 HOH HOH A . C 3 HOH 161 2161 2161 HOH HOH A . C 3 HOH 162 2162 2162 HOH HOH A . C 3 HOH 163 2163 2163 HOH HOH A . C 3 HOH 164 2164 2164 HOH HOH A . C 3 HOH 165 2165 2165 HOH HOH A . C 3 HOH 166 2166 2166 HOH HOH A . C 3 HOH 167 2167 2167 HOH HOH A . C 3 HOH 168 2168 2168 HOH HOH A . C 3 HOH 169 2169 2169 HOH HOH A . C 3 HOH 170 2170 2170 HOH HOH A . C 3 HOH 171 2171 2171 HOH HOH A . C 3 HOH 172 2172 2172 HOH HOH A . C 3 HOH 173 2173 2173 HOH HOH A . C 3 HOH 174 2174 2174 HOH HOH A . C 3 HOH 175 2175 2175 HOH HOH A . C 3 HOH 176 2176 2176 HOH HOH A . C 3 HOH 177 2177 2177 HOH HOH A . C 3 HOH 178 2178 2178 HOH HOH A . C 3 HOH 179 2179 2179 HOH HOH A . C 3 HOH 180 2180 2180 HOH HOH A . C 3 HOH 181 2181 2181 HOH HOH A . C 3 HOH 182 2182 2182 HOH HOH A . C 3 HOH 183 2183 2183 HOH HOH A . C 3 HOH 184 2184 2184 HOH HOH A . C 3 HOH 185 2185 2185 HOH HOH A . C 3 HOH 186 2186 2186 HOH HOH A . C 3 HOH 187 2187 2187 HOH HOH A . C 3 HOH 188 2188 2188 HOH HOH A . C 3 HOH 189 2189 2189 HOH HOH A . C 3 HOH 190 2190 2190 HOH HOH A . C 3 HOH 191 2191 2191 HOH HOH A . C 3 HOH 192 2192 2192 HOH HOH A . C 3 HOH 193 2193 2193 HOH HOH A . C 3 HOH 194 2194 2194 HOH HOH A . C 3 HOH 195 2195 2195 HOH HOH A . C 3 HOH 196 2196 2196 HOH HOH A . C 3 HOH 197 2197 2197 HOH HOH A . C 3 HOH 198 2198 2198 HOH HOH A . C 3 HOH 199 2199 2199 HOH HOH A . C 3 HOH 200 2200 2200 HOH HOH A . C 3 HOH 201 2201 2201 HOH HOH A . C 3 HOH 202 2202 2202 HOH HOH A . C 3 HOH 203 2203 2203 HOH HOH A . C 3 HOH 204 2204 2204 HOH HOH A . C 3 HOH 205 2205 2205 HOH HOH A . C 3 HOH 206 2206 2206 HOH HOH A . C 3 HOH 207 2207 2207 HOH HOH A . C 3 HOH 208 2208 2208 HOH HOH A . C 3 HOH 209 2209 2209 HOH HOH A . C 3 HOH 210 2210 2210 HOH HOH A . C 3 HOH 211 2211 2211 HOH HOH A . C 3 HOH 212 2212 2212 HOH HOH A . C 3 HOH 213 2213 2213 HOH HOH A . C 3 HOH 214 2214 2214 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2001-03-01 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2019-05-22 5 'Structure model' 2 1 2020-07-01 6 'Structure model' 2 2 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 6 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' Other 7 4 'Structure model' 'Refinement description' 8 5 'Structure model' Advisory 9 5 'Structure model' 'Data collection' 10 5 'Structure model' 'Derived calculations' 11 5 'Structure model' Other 12 6 'Structure model' 'Data collection' 13 6 'Structure model' 'Derived calculations' 14 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' pdbx_database_proc 3 4 'Structure model' pdbx_database_status 4 4 'Structure model' refine 5 4 'Structure model' struct_conn 6 5 'Structure model' chem_comp 7 5 'Structure model' pdbx_database_status 8 5 'Structure model' pdbx_validate_close_contact 9 5 'Structure model' struct_conn 10 5 'Structure model' struct_conn_type 11 6 'Structure model' chem_comp 12 6 'Structure model' entity 13 6 'Structure model' pdbx_chem_comp_identifier 14 6 'Structure model' pdbx_entity_nonpoly 15 6 'Structure model' struct_site 16 6 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_pdbx_database_status.recvd_author_approval' 2 4 'Structure model' '_refine.pdbx_ls_cross_valid_method' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 5 'Structure model' '_chem_comp.type' 5 5 'Structure model' '_pdbx_database_status.status_code_sf' 6 6 'Structure model' '_chem_comp.name' 7 6 'Structure model' '_entity.pdbx_description' 8 6 'Structure model' '_pdbx_entity_nonpoly.name' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR refinement 3.851 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 CCP4 phasing . ? 4 # _pdbx_database_remark.id 700 _pdbx_database_remark.text ; SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS "A" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. ; # _pdbx_entry_details.entry_id 1E9L _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;RESIDUES 394-398 WERE NOT VISIBLE IN THE ELECTRON DENSITY. HOWEVER, AS THERE IS NO EVIDENCE TO SUGGEST THAT THESE RESIDUES ARE NOT PRESENT IN THE SAMPLE THEY HAVE BEEN INCLUDED IN THE SEQRES RECORD. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 H1 A HOH 2125 ? ? H2 A HOH 2211 ? ? 1.31 2 1 H A LYS 42 ? ? HD21 A ASN 45 ? ? 1.34 3 1 H A GLN 23 ? ? O A GLY 355 ? ? 1.55 4 1 OH A TYR 212 ? ? O4 A GCS 800 ? ? 1.71 5 1 CH2 A TRP 360 ? ? O3 A GCS 800 ? ? 1.91 6 1 CZ3 A TRP 360 ? ? O3 A GCS 800 ? ? 2.00 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 N _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 ASP _pdbx_validate_rmsd_bond.auth_seq_id_1 138 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CA _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 ASP _pdbx_validate_rmsd_bond.auth_seq_id_2 138 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.258 _pdbx_validate_rmsd_bond.bond_target_value 1.459 _pdbx_validate_rmsd_bond.bond_deviation -0.201 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.020 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C A TYR 141 ? ? N A PRO 142 ? ? CA A PRO 142 ? ? 129.03 119.30 9.73 1.50 Y 2 1 N A GLY 355 ? ? CA A GLY 355 ? ? C A GLY 355 ? ? 91.00 113.10 -22.10 2.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 57 ? ? -1.54 -97.75 2 1 LYS A 84 ? ? -64.26 4.17 3 1 ALA A 104 ? ? -28.74 -56.23 4 1 GLN A 140 ? ? -67.20 91.46 5 1 TYR A 141 ? ? 69.89 96.12 6 1 ASP A 174 ? ? 72.89 65.87 7 1 PRO A 217 ? ? -39.91 -20.75 8 1 PRO A 232 ? ? -58.91 -0.96 9 1 ALA A 266 ? ? -97.35 41.82 10 1 ASP A 296 ? ? 21.87 88.02 11 1 TYR A 336 ? ? -135.90 -155.89 12 1 ASN A 338 ? ? -127.76 -166.58 13 1 ASN A 352 ? ? 47.64 29.38 14 1 ASN A 353 ? ? -78.36 45.50 15 1 LEU A 354 ? ? -47.28 -171.50 16 1 ASP A 366 ? ? -67.29 75.82 17 1 ARG A 375 ? ? 62.15 -175.49 18 1 PHE A 377 ? ? 44.81 72.66 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 2006 ? 7.58 . 2 1 O ? A HOH 2010 ? 9.13 . 3 1 O ? A HOH 2016 ? 7.33 . 4 1 O ? A HOH 2019 ? 9.78 . 5 1 O ? A HOH 2021 ? 8.62 . 6 1 O ? A HOH 2025 ? 6.26 . 7 1 O ? A HOH 2030 ? 9.46 . 8 1 O ? A HOH 2031 ? 7.61 . 9 1 O ? A HOH 2036 ? 6.61 . 10 1 O ? A HOH 2037 ? 6.41 . 11 1 O ? A HOH 2040 ? 7.37 . 12 1 O ? A HOH 2049 ? 8.21 . 13 1 O ? A HOH 2055 ? 6.40 . 14 1 O ? A HOH 2066 ? 6.22 . 15 1 O ? A HOH 2076 ? 6.49 . 16 1 O ? A HOH 2081 ? 6.90 . 17 1 O ? A HOH 2091 ? 6.26 . 18 1 O ? A HOH 2097 ? 6.26 . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 71 ? CG ? A GLU 50 CG 2 1 Y 1 A GLU 71 ? CD ? A GLU 50 CD 3 1 Y 1 A GLU 71 ? OE1 ? A GLU 50 OE1 4 1 Y 1 A GLU 71 ? OE2 ? A GLU 50 OE2 5 1 Y 1 A GLN 72 ? CG ? A GLN 51 CG 6 1 Y 1 A GLN 72 ? CD ? A GLN 51 CD 7 1 Y 1 A GLN 72 ? OE1 ? A GLN 51 OE1 8 1 Y 1 A GLN 72 ? NE2 ? A GLN 51 NE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A CYS 394 ? A CYS 373 2 1 Y 1 A LYS 395 ? A LYS 374 3 1 Y 1 A GLY 396 ? A GLY 375 4 1 Y 1 A PRO 397 ? A PRO 376 5 1 Y 1 A TYR 398 ? A TYR 377 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GCS 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNb GCS 'COMMON NAME' GMML 1.0 b-D-glucopyranosamine GCS 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpN GCS 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcN # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 2-amino-2-deoxy-beta-D-glucopyranose GCS 3 water HOH #