data_1EEK # _entry.id 1EEK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1EEK pdb_00001eek 10.2210/pdb1eek/pdb RCSB RCSB010497 ? ? WWPDB D_1000010497 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1BW7 _pdbx_database_related.details 'solution structure of an F - A pair' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1EEK _pdbx_database_status.recvd_initial_deposition_date 2000-02-01 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kool, E.T.' 1 'Krugh, T.R.' 2 'Guckian, K.M.' 3 # _citation.id primary _citation.title 'Solution Structure of a Nonpolar, Non-Hydrogen-Bonded Base Pair Surrogate in DNA' _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 122 _citation.page_first 6841 _citation.page_last 6847 _citation.year 2000 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed -1 _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Guckian, K.M.' 1 ? primary 'Krugh, T.R.' 2 ? primary 'Kool, E.T.' 3 ? # _cell.entry_id 1EEK _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EEK _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*GP*CP*AP*TP*(DFT)P*GP*TP*TP*AP*CP*C)-3'" 3615.372 1 ? ? ? ? 2 polymer syn "5'-D(*GP*GP*TP*AP*AP*CP*(MBZ)P*AP*TP*GP*CP*G)-3'" 3708.478 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DC)(DG)(DC)(DA)(DT)(DFT)(DG)(DT)(DT)(DA)(DC)(DC)' CGCATNGTTACC 1 ? 2 polydeoxyribonucleotide no yes '(DG)(DG)(DT)(DA)(DA)(DC)(MBZ)(DA)(DT)(DG)(DC)(DG)' GGTAACNATGCG 2 ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DA n 1 5 DT n 1 6 DFT n 1 7 DG n 1 8 DT n 1 9 DT n 1 10 DA n 1 11 DC n 1 12 DC n 2 1 DG n 2 2 DG n 2 3 DT n 2 4 DA n 2 5 DA n 2 6 DC n 2 7 MBZ n 2 8 DA n 2 9 DT n 2 10 DG n 2 11 DC n 2 12 DG n # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 1EEK 1EEK ? ? ? 2 2 PDB 1EEK 1EEK ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1EEK 1 1 ? 12 ? 1EEK 1 ? 12 ? 1 12 2 2 1EEK 2 1 ? 12 ? 1EEK 1 ? 12 ? 1 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DFT 'DNA linking' . "1-[2-DEOXYRIBOFURANOSYL]-2,4-DIFLUORO-5-METHYL-BENZENE-5'MONOPHOSPHATE" ? 'C12 H15 F2 O6 P' 324.214 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 MBZ 'DNA linking' . "1-[2-DEOXYRIBOFURANOSYL]-4-METHYL-BENZOIMIDAZOLE-5'-MONOPHOSPHATE" ? 'C13 H17 N2 O6 P' 328.258 # _pdbx_nmr_exptl.experiment_id 1 _pdbx_nmr_exptl.conditions_id 1 _pdbx_nmr_exptl.solution_id 1 _pdbx_nmr_exptl.type '2D NOESY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 15 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.4 _pdbx_nmr_exptl_sample_conditions.ionic_strength '100 mM' _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '3 mM DNA, phosphate buffer, 100% D2O' _pdbx_nmr_sample_details.solvent_system '100% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.model UNITY _pdbx_nmr_spectrometer.field_strength 500 # _pdbx_nmr_refine.entry_id 1EEK _pdbx_nmr_refine.method 'restrained molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1EEK _pdbx_nmr_ensemble.conformers_calculated_total_number ? _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria ? # _exptl.entry_id 1EEK _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1EEK _struct.title 'SOLUTION STRUCTURE OF A NONPOLAR, NON HYDROGEN BONDED BASE PAIR SURROGATE IN DNA.' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1EEK _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DNA, Nonpolar, isosteric, DNA base analogs' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DT 5 "O3'" ? ? ? 1_555 A DFT 6 P ? ? 1 DT 5 1 DFT 6 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale2 covale both ? A DFT 6 "O3'" ? ? ? 1_555 A DG 7 P ? ? 1 DFT 6 1 DG 7 1_555 ? ? ? ? ? ? ? 1.624 ? ? covale3 covale both ? B DC 6 "O3'" ? ? ? 1_555 B MBZ 7 P ? ? 2 DC 6 2 MBZ 7 1_555 ? ? ? ? ? ? ? 1.597 ? ? covale4 covale one ? B MBZ 7 "O3'" ? ? ? 1_555 B DA 8 P ? ? 2 MBZ 7 2 DA 8 1_555 ? ? ? ? ? ? ? 1.613 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? 1 DC 1 2 DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? 1 DC 1 2 DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? 1 DC 1 2 DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? 1 DG 2 2 DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? 1 DG 2 2 DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? 1 DG 2 2 DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? 1 DC 3 2 DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? 1 DC 3 2 DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? 1 DC 3 2 DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 9 N3 ? ? 1 DA 4 2 DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 9 O4 ? ? 1 DA 4 2 DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 8 N1 ? ? 1 DT 5 2 DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 8 N6 ? ? 1 DT 5 2 DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 6 N3 ? ? 1 DG 7 2 DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 6 O2 ? ? 1 DG 7 2 DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 6 N4 ? ? 1 DG 7 2 DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? 1 DT 8 2 DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? 1 DT 8 2 DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 4 N1 ? ? 1 DT 9 2 DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 4 N6 ? ? 1 DT 9 2 DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 3 N3 ? ? 1 DA 10 2 DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 3 O4 ? ? 1 DA 10 2 DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? 1 DC 11 2 DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? 1 DC 11 2 DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? 1 DC 11 2 DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 12 N3 ? ? ? 1_555 B DG 1 N1 ? ? 1 DC 12 2 DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 12 N4 ? ? ? 1_555 B DG 1 O6 ? ? 1 DC 12 2 DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 12 O2 ? ? ? 1_555 B DG 1 N2 ? ? 1 DC 12 2 DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _database_PDB_matrix.entry_id 1EEK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1EEK _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C F H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C 1 . n A 1 2 DG 2 2 2 DG G 1 . n A 1 3 DC 3 3 3 DC C 1 . n A 1 4 DA 4 4 4 DA A 1 . n A 1 5 DT 5 5 5 DT T 1 . n A 1 6 DFT 6 6 6 DFT DFT 1 . n A 1 7 DG 7 7 7 DG G 1 . n A 1 8 DT 8 8 8 DT T 1 . n A 1 9 DT 9 9 9 DT T 1 . n A 1 10 DA 10 10 10 DA A 1 . n A 1 11 DC 11 11 11 DC C 1 . n A 1 12 DC 12 12 12 DC C 1 . n B 2 1 DG 1 1 1 DG G 2 . n B 2 2 DG 2 2 2 DG G 2 . n B 2 3 DT 3 3 3 DT T 2 . n B 2 4 DA 4 4 4 DA A 2 . n B 2 5 DA 5 5 5 DA A 2 . n B 2 6 DC 6 6 6 DC C 2 . n B 2 7 MBZ 7 7 7 MBZ MBZ 2 . n B 2 8 DA 8 8 8 DA A 2 . n B 2 9 DT 9 9 9 DT T 2 . n B 2 10 DG 10 10 10 DG G 2 . n B 2 11 DC 11 11 11 DC C 2 . n B 2 12 DG 12 12 12 DG G 2 . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-02-16 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_struct_assembly 3 4 'Structure model' pdbx_struct_oper_list 4 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" 1 DC 1 ? ? "C1'" 1 DC 1 ? ? N1 1 DC 1 ? ? 110.65 108.30 2.35 0.30 N 2 1 "O4'" 1 DT 8 ? ? "C1'" 1 DT 8 ? ? N1 1 DT 8 ? ? 110.16 108.30 1.86 0.30 N 3 1 "O4'" 1 DA 10 ? ? "C1'" 1 DA 10 ? ? N9 1 DA 10 ? ? 110.62 108.30 2.32 0.30 N 4 1 "O4'" 1 DC 12 ? ? "C1'" 1 DC 12 ? ? N1 1 DC 12 ? ? 113.81 108.30 5.51 0.30 N 5 1 "O5'" 2 DG 1 ? ? "C5'" 2 DG 1 ? ? "C4'" 2 DG 1 ? ? 130.65 111.00 19.65 2.50 N 6 1 "O4'" 2 DG 1 ? ? "C1'" 2 DG 1 ? ? N9 2 DG 1 ? ? 111.03 108.30 2.73 0.30 N 7 1 "O4'" 2 DA 4 ? ? "C1'" 2 DA 4 ? ? N9 2 DA 4 ? ? 112.09 108.30 3.79 0.30 N 8 1 "O4'" 2 DC 6 ? ? "C1'" 2 DC 6 ? ? N1 2 DC 6 ? ? 111.51 108.30 3.21 0.30 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DA 1 4 ? ? 0.118 'SIDE CHAIN' 2 1 DT 1 5 ? ? 0.100 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1EEK 'double helix' 1EEK 'b-form double helix' 1EEK 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.352 -0.115 -0.165 20.698 -25.110 -0.926 1 1_DC1:DG12_2 1 1 ? 2 12 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.591 -0.265 0.193 -0.026 -11.244 -1.656 2 1_DG2:DC11_2 1 2 ? 2 11 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 0.479 -0.198 0.176 -5.540 -12.167 -1.156 3 1_DC3:DG10_2 1 3 ? 2 10 ? 19 1 1 A DA 4 1_555 B DT 9 1_555 0.235 -0.082 0.320 -5.841 -5.014 -1.706 4 1_DA4:DT9_2 1 4 ? 2 9 ? 20 1 1 A DT 5 1_555 B DA 8 1_555 -0.397 -0.146 0.562 1.424 -10.434 -1.895 5 1_DT5:DA8_2 1 5 ? 2 8 ? 20 1 1 A DG 7 1_555 B DC 6 1_555 -0.465 -0.236 -0.329 -5.607 -4.594 -2.043 6 1_DG7:DC6_2 1 7 ? 2 6 ? 19 1 1 A DT 8 1_555 B DA 5 1_555 -0.244 -0.089 0.264 -6.276 -10.573 -2.336 7 1_DT8:DA5_2 1 8 ? 2 5 ? 20 1 1 A DT 9 1_555 B DA 4 1_555 -0.016 -0.110 -0.011 -2.821 -15.481 -1.289 8 1_DT9:DA4_2 1 9 ? 2 4 ? 20 1 1 A DA 10 1_555 B DT 3 1_555 0.054 -0.096 0.322 8.408 -10.135 -2.727 9 1_DA10:DT3_2 1 10 ? 2 3 ? 20 1 1 A DC 11 1_555 B DG 2 1_555 0.299 -0.160 -0.190 12.919 -14.851 -1.655 10 1_DC11:DG2_2 1 11 ? 2 2 ? 19 1 1 A DC 12 1_555 B DG 1 1_555 0.555 -0.244 0.375 -5.458 -12.276 -1.986 11 1_DC12:DG1_2 1 12 ? 2 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 -0.149 -0.915 3.345 -5.456 15.099 32.874 -3.495 -0.496 2.677 24.915 9.002 36.487 1 11_DC1DG2:DC11DG12_22 1 1 ? 2 12 ? 1 2 ? 2 11 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 0.174 -0.630 3.191 0.830 3.682 43.238 -1.198 -0.158 3.132 4.986 -1.124 43.394 2 11_DG2DC3:DG10DC11_22 1 2 ? 2 11 ? 1 3 ? 2 10 ? 1 A DC 3 1_555 B DG 10 1_555 A DA 4 1_555 B DT 9 1_555 -0.319 -1.363 2.925 -1.369 9.566 31.181 -3.821 0.368 2.424 17.284 2.474 32.609 3 11_DC3DA4:DT9DG10_22 1 3 ? 2 10 ? 1 4 ? 2 9 ? 1 A DA 4 1_555 B DT 9 1_555 A DT 5 1_555 B DA 8 1_555 -0.401 -0.720 2.983 -2.614 -1.475 33.365 -1.025 0.300 3.033 -2.563 4.542 33.496 4 11_DA4DT5:DA8DT9_22 1 4 ? 2 9 ? 1 5 ? 2 8 ? 1 A DT 5 1_555 B DA 8 1_555 A DG 7 1_555 B DC 6 1_555 0.931 0.515 6.802 4.842 -0.255 68.462 0.477 -0.450 6.845 -0.227 -4.298 68.613 5 11_DT5DG7:DC6DA8_22 1 5 ? 2 8 ? 1 7 ? 2 6 ? 1 A DG 7 1_555 B DC 6 1_555 A DT 8 1_555 B DA 5 1_555 -0.488 -1.462 3.283 -5.410 4.678 30.915 -3.523 -0.087 3.074 8.631 9.981 31.711 6 11_DG7DT8:DA5DC6_22 1 7 ? 2 6 ? 1 8 ? 2 5 ? 1 A DT 8 1_555 B DA 5 1_555 A DT 9 1_555 B DA 4 1_555 0.280 -0.719 2.938 4.354 4.840 38.730 -1.584 0.046 2.845 7.235 -6.509 39.252 7 11_DT8DT9:DA4DA5_22 1 8 ? 2 5 ? 1 9 ? 2 4 ? 1 A DT 9 1_555 B DA 4 1_555 A DA 10 1_555 B DT 3 1_555 -0.022 -1.056 2.724 -2.834 12.316 26.254 -4.168 -0.431 2.027 25.332 5.828 29.089 8 11_DT9DA10:DT3DA4_22 1 9 ? 2 4 ? 1 10 ? 2 3 ? 1 A DA 10 1_555 B DT 3 1_555 A DC 11 1_555 B DG 2 1_555 -0.375 -0.651 2.974 1.737 0.887 38.952 -1.072 0.751 2.940 1.330 -2.603 38.999 9 11_DA10DC11:DG2DT3_22 1 10 ? 2 3 ? 1 11 ? 2 2 ? 1 A DC 11 1_555 B DG 2 1_555 A DC 12 1_555 B DG 1 1_555 0.863 -1.550 3.543 -3.473 2.442 33.117 -3.125 -2.109 3.318 4.262 6.062 33.380 10 11_DC11DC12:DG1DG2_22 1 11 ? 2 2 ? 1 12 ? 2 1 ? #