data_1EVO # _entry.id 1EVO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1EVO pdb_00001evo 10.2210/pdb1evo/pdb RCSB RCSB010933 ? ? WWPDB D_1000010933 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-05-01 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-16 5 'Structure model' 1 4 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 5 'Structure model' chem_comp_atom 6 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1EVO _pdbx_database_status.recvd_initial_deposition_date 2000-04-20 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Patel, P.K.' 1 'Bhavesh, N.S.' 2 'Hosur, R.V.' 3 # _citation.id primary _citation.title 'NMR observation of a novel C-tetrad in the structure of the SV40 repeat sequence GGGCGG.' _citation.journal_abbrev Biochem.Biophys.Res.Commun. _citation.journal_volume 270 _citation.page_first 967 _citation.page_last 971 _citation.year 2000 _citation.journal_id_ASTM BBRCA9 _citation.country US _citation.journal_id_ISSN 0006-291X _citation.journal_id_CSD 0146 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10772934 _citation.pdbx_database_id_DOI 10.1006/bbrc.2000.2479 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Patel, P.K.' 1 ? primary 'Bhavesh, N.S.' 2 ? primary 'Hosur, R.V.' 3 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description ;DNA (5'-D(*TP*GP*GP*GP*CP*GP*GP*T)-3') ; _entity.formula_weight 2498.639 _entity.pdbx_number_of_molecules 4 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details 'PARALLEL STRANDED DNA QUDRUPLEX INCORPORATING C-TETRAD' # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DT)(DG)(DG)(DG)(DC)(DG)(DG)(DT)' _entity_poly.pdbx_seq_one_letter_code_can TGGGCGGT _entity_poly.pdbx_strand_id O,P,Q,R _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DG n 1 3 DG n 1 4 DG n 1 5 DC n 1 6 DG n 1 7 DG n 1 8 DT n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 301 301 DT T O . n A 1 2 DG 2 302 302 DG G O . n A 1 3 DG 3 303 303 DG G O . n A 1 4 DG 4 304 304 DG G O . n A 1 5 DC 5 305 305 DC C O . n A 1 6 DG 6 306 306 DG G O . n A 1 7 DG 7 307 307 DG G O . n A 1 8 DT 8 308 308 DT T O . n B 1 1 DT 1 101 101 DT T P . n B 1 2 DG 2 102 102 DG G P . n B 1 3 DG 3 103 103 DG G P . n B 1 4 DG 4 104 104 DG G P . n B 1 5 DC 5 105 105 DC C P . n B 1 6 DG 6 106 106 DG G P . n B 1 7 DG 7 107 107 DG G P . n B 1 8 DT 8 108 108 DT T P . n C 1 1 DT 1 201 201 DT T Q . n C 1 2 DG 2 202 202 DG G Q . n C 1 3 DG 3 203 203 DG G Q . n C 1 4 DG 4 204 204 DG G Q . n C 1 5 DC 5 205 205 DC C Q . n C 1 6 DG 6 206 206 DG G Q . n C 1 7 DG 7 207 207 DG G Q . n C 1 8 DT 8 208 208 DT T Q . n D 1 1 DT 1 401 401 DT T R . n D 1 2 DG 2 402 402 DG G R . n D 1 3 DG 3 403 403 DG G R . n D 1 4 DG 4 404 404 DG G R . n D 1 5 DC 5 405 405 DC C R . n D 1 6 DG 6 406 406 DG G R . n D 1 7 DG 7 407 407 DG G R . n D 1 8 DT 8 408 408 DT T R . n # _cell.entry_id 1EVO _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EVO _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 1EVO _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _database_PDB_matrix.entry_id 1EVO _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1EVO _struct.title 'NMR OBSERVATION OF A NOVEL C-TETRAD' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1EVO _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'NMR structure; G-quadruplex; C-tetrad; GGGCGG repeat, SV40, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1EVO _struct_ref.pdbx_db_accession 1EVO _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1EVO O 1 ? 8 ? 1EVO 301 ? 308 ? 301 308 2 1 1EVO P 1 ? 8 ? 1EVO 101 ? 108 ? 101 108 3 1 1EVO Q 1 ? 8 ? 1EVO 201 ? 208 ? 201 208 4 1 1EVO R 1 ? 8 ? 1EVO 401 ? 408 ? 401 408 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 2 N1 ? ? ? 1_555 C DG 2 O6 ? ? O DG 302 Q DG 202 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A DG 2 N2 ? ? ? 1_555 C DG 2 N7 ? ? O DG 302 Q DG 202 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 2 N7 ? ? ? 1_555 D DG 2 N2 ? ? O DG 302 R DG 402 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 2 O6 ? ? ? 1_555 D DG 2 N1 ? ? O DG 302 R DG 402 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 3 N1 ? ? ? 1_555 C DG 3 O6 ? ? O DG 303 Q DG 203 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 3 N2 ? ? ? 1_555 C DG 3 N7 ? ? O DG 303 Q DG 203 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 3 N7 ? ? ? 1_555 D DG 3 N2 ? ? O DG 303 R DG 403 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 D DG 3 N1 ? ? O DG 303 R DG 403 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 C DG 4 O6 ? ? O DG 304 Q DG 204 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 C DG 4 N7 ? ? O DG 304 Q DG 204 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 4 N7 ? ? ? 1_555 D DG 4 N2 ? ? O DG 304 R DG 404 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 D DG 4 N1 ? ? O DG 304 R DG 404 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 C DC 5 N4 ? ? O DC 305 Q DC 205 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog14 hydrog ? ? A DC 5 N4 ? ? ? 1_555 D DC 5 O2 ? ? O DC 305 R DC 405 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog15 hydrog ? ? A DG 6 N1 ? ? ? 1_555 C DG 6 O6 ? ? O DG 306 Q DG 206 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 6 N2 ? ? ? 1_555 C DG 6 N7 ? ? O DG 306 Q DG 206 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A DG 6 N7 ? ? ? 1_555 D DG 6 N2 ? ? O DG 306 R DG 406 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A DG 6 O6 ? ? ? 1_555 D DG 6 N1 ? ? O DG 306 R DG 406 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A DG 7 N1 ? ? ? 1_555 C DG 7 O6 ? ? O DG 307 Q DG 207 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? A DG 7 N2 ? ? ? 1_555 C DG 7 N7 ? ? O DG 307 Q DG 207 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A DG 7 N7 ? ? ? 1_555 D DG 7 N2 ? ? O DG 307 R DG 407 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A DG 7 O6 ? ? ? 1_555 D DG 7 N1 ? ? O DG 307 R DG 407 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A DT 8 N3 ? ? ? 1_555 C DT 8 O4 ? ? O DT 308 Q DT 208 1_555 ? ? ? ? ? ? 'DT-DT MISPAIR' ? ? ? hydrog24 hydrog ? ? A DT 8 O4 ? ? ? 1_555 D DT 8 N3 ? ? O DT 308 R DT 408 1_555 ? ? ? ? ? ? 'DT-DT MISPAIR' ? ? ? hydrog25 hydrog ? ? B DG 2 N7 ? ? ? 1_555 C DG 2 N2 ? ? P DG 102 Q DG 202 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? B DG 2 O6 ? ? ? 1_555 C DG 2 N1 ? ? P DG 102 Q DG 202 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? B DG 2 N1 ? ? ? 1_555 D DG 2 O6 ? ? P DG 102 R DG 402 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? B DG 2 N2 ? ? ? 1_555 D DG 2 N7 ? ? P DG 102 R DG 402 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog29 hydrog ? ? B DG 3 N7 ? ? ? 1_555 C DG 3 N2 ? ? P DG 103 Q DG 203 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog30 hydrog ? ? B DG 3 O6 ? ? ? 1_555 C DG 3 N1 ? ? P DG 103 Q DG 203 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog31 hydrog ? ? B DG 3 N1 ? ? ? 1_555 D DG 3 O6 ? ? P DG 103 R DG 403 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog32 hydrog ? ? B DG 3 N2 ? ? ? 1_555 D DG 3 N7 ? ? P DG 103 R DG 403 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog33 hydrog ? ? B DG 4 N7 ? ? ? 1_555 C DG 4 N2 ? ? P DG 104 Q DG 204 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog34 hydrog ? ? B DG 4 O6 ? ? ? 1_555 C DG 4 N1 ? ? P DG 104 Q DG 204 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog35 hydrog ? ? B DG 4 N1 ? ? ? 1_555 D DG 4 O6 ? ? P DG 104 R DG 404 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog36 hydrog ? ? B DG 4 N2 ? ? ? 1_555 D DG 4 N7 ? ? P DG 104 R DG 404 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog37 hydrog ? ? B DC 5 N4 ? ? ? 1_555 C DC 5 O2 ? ? P DC 105 Q DC 205 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog38 hydrog ? ? B DC 5 O2 ? ? ? 1_555 D DC 5 N4 ? ? P DC 105 R DC 405 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog39 hydrog ? ? B DG 6 N7 ? ? ? 1_555 C DG 6 N2 ? ? P DG 106 Q DG 206 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog40 hydrog ? ? B DG 6 O6 ? ? ? 1_555 C DG 6 N1 ? ? P DG 106 Q DG 206 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog41 hydrog ? ? B DG 6 N1 ? ? ? 1_555 D DG 6 O6 ? ? P DG 106 R DG 406 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog42 hydrog ? ? B DG 6 N2 ? ? ? 1_555 D DG 6 N7 ? ? P DG 106 R DG 406 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog43 hydrog ? ? B DG 7 N7 ? ? ? 1_555 C DG 7 N2 ? ? P DG 107 Q DG 207 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog44 hydrog ? ? B DG 7 O6 ? ? ? 1_555 C DG 7 N1 ? ? P DG 107 Q DG 207 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog45 hydrog ? ? B DG 7 N1 ? ? ? 1_555 D DG 7 O6 ? ? P DG 107 R DG 407 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog46 hydrog ? ? B DG 7 N2 ? ? ? 1_555 D DG 7 N7 ? ? P DG 107 R DG 407 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog47 hydrog ? ? B DT 8 O4 ? ? ? 1_555 C DT 8 N3 ? ? P DT 108 Q DT 208 1_555 ? ? ? ? ? ? 'DT-DT MISPAIR' ? ? ? hydrog48 hydrog ? ? B DT 8 N3 ? ? ? 1_555 D DT 8 O4 ? ? P DT 108 R DT 408 1_555 ? ? ? ? ? ? 'DT-DT MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" O DC 305 ? ? "C1'" O DC 305 ? ? N1 O DC 305 ? ? 110.39 108.30 2.09 0.30 N 2 1 "O4'" O DT 308 ? ? "C1'" O DT 308 ? ? N1 O DT 308 ? ? 110.31 108.30 2.01 0.30 N 3 1 C6 O DT 308 ? ? C5 O DT 308 ? ? C7 O DT 308 ? ? 119.01 122.90 -3.89 0.60 N 4 1 "O4'" P DG 104 ? ? "C1'" P DG 104 ? ? "C2'" P DG 104 ? ? 100.78 105.90 -5.12 0.80 N 5 1 "O4'" P DC 105 ? ? "C1'" P DC 105 ? ? N1 P DC 105 ? ? 110.97 108.30 2.67 0.30 N 6 1 "O4'" P DT 108 ? ? "C1'" P DT 108 ? ? N1 P DT 108 ? ? 110.50 108.30 2.20 0.30 N 7 1 C6 P DT 108 ? ? C5 P DT 108 ? ? C7 P DT 108 ? ? 118.26 122.90 -4.64 0.60 N 8 1 N1 Q DT 201 ? ? "C1'" Q DT 201 ? ? "C2'" Q DT 201 ? ? 122.77 114.30 8.47 1.40 N 9 1 "O4'" Q DG 202 ? ? "C1'" Q DG 202 ? ? "C2'" Q DG 202 ? ? 101.08 105.90 -4.82 0.80 N 10 1 "O4'" Q DG 204 ? ? "C1'" Q DG 204 ? ? "C2'" Q DG 204 ? ? 101.08 105.90 -4.82 0.80 N 11 1 C6 Q DT 208 ? ? C5 Q DT 208 ? ? C7 Q DT 208 ? ? 118.90 122.90 -4.00 0.60 N 12 1 "O4'" R DG 404 ? ? "C1'" R DG 404 ? ? "C2'" R DG 404 ? ? 101.00 105.90 -4.90 0.80 N 13 1 "O4'" R DC 405 ? ? "C1'" R DC 405 ? ? N1 R DC 405 ? ? 112.43 108.30 4.13 0.30 N 14 1 "O4'" R DT 408 ? ? "C1'" R DT 408 ? ? N1 R DT 408 ? ? 111.25 108.30 2.95 0.30 N 15 1 C6 R DT 408 ? ? C5 R DT 408 ? ? C7 R DT 408 ? ? 118.03 122.90 -4.87 0.60 N 16 2 "O4'" O DG 302 ? ? "C1'" O DG 302 ? ? "C2'" O DG 302 ? ? 101.08 105.90 -4.82 0.80 N 17 2 "O4'" O DG 304 ? ? "C1'" O DG 304 ? ? "C2'" O DG 304 ? ? 100.98 105.90 -4.92 0.80 N 18 2 "O4'" O DC 305 ? ? "C1'" O DC 305 ? ? N1 O DC 305 ? ? 111.06 108.30 2.76 0.30 N 19 2 "O4'" O DT 308 ? ? "C1'" O DT 308 ? ? N1 O DT 308 ? ? 110.69 108.30 2.39 0.30 N 20 2 C6 O DT 308 ? ? C5 O DT 308 ? ? C7 O DT 308 ? ? 118.56 122.90 -4.34 0.60 N 21 2 "O4'" P DG 104 ? ? "C1'" P DG 104 ? ? "C2'" P DG 104 ? ? 100.89 105.90 -5.01 0.80 N 22 2 "O4'" P DC 105 ? ? "C1'" P DC 105 ? ? N1 P DC 105 ? ? 110.18 108.30 1.88 0.30 N 23 2 "O4'" P DT 108 ? ? "C1'" P DT 108 ? ? N1 P DT 108 ? ? 110.52 108.30 2.22 0.30 N 24 2 C6 P DT 108 ? ? C5 P DT 108 ? ? C7 P DT 108 ? ? 118.63 122.90 -4.27 0.60 N 25 2 "O4'" Q DG 202 ? ? "C1'" Q DG 202 ? ? "C2'" Q DG 202 ? ? 100.80 105.90 -5.10 0.80 N 26 2 "O4'" Q DT 208 ? ? "C1'" Q DT 208 ? ? N1 Q DT 208 ? ? 110.82 108.30 2.52 0.30 N 27 2 C6 Q DT 208 ? ? C5 Q DT 208 ? ? C7 Q DT 208 ? ? 118.45 122.90 -4.45 0.60 N 28 2 "O4'" R DG 404 ? ? "C1'" R DG 404 ? ? "C2'" R DG 404 ? ? 101.07 105.90 -4.83 0.80 N 29 2 "O4'" R DT 408 ? ? "C1'" R DT 408 ? ? N1 R DT 408 ? ? 110.90 108.30 2.60 0.30 N 30 2 C6 R DT 408 ? ? C5 R DT 408 ? ? C7 R DT 408 ? ? 118.51 122.90 -4.39 0.60 N 31 3 "O4'" O DG 304 ? ? "C1'" O DG 304 ? ? "C2'" O DG 304 ? ? 101.03 105.90 -4.87 0.80 N 32 3 "O4'" O DC 305 ? ? "C1'" O DC 305 ? ? N1 O DC 305 ? ? 110.30 108.30 2.00 0.30 N 33 3 "O4'" O DT 308 ? ? "C1'" O DT 308 ? ? N1 O DT 308 ? ? 111.22 108.30 2.92 0.30 N 34 3 C6 O DT 308 ? ? C5 O DT 308 ? ? C7 O DT 308 ? ? 118.52 122.90 -4.38 0.60 N 35 3 "O4'" P DG 104 ? ? "C1'" P DG 104 ? ? "C2'" P DG 104 ? ? 100.78 105.90 -5.12 0.80 N 36 3 "O4'" P DC 105 ? ? "C1'" P DC 105 ? ? N1 P DC 105 ? ? 110.58 108.30 2.28 0.30 N 37 3 "O4'" P DT 108 ? ? "C1'" P DT 108 ? ? N1 P DT 108 ? ? 110.85 108.30 2.55 0.30 N 38 3 C6 P DT 108 ? ? C5 P DT 108 ? ? C7 P DT 108 ? ? 118.84 122.90 -4.06 0.60 N 39 3 "O4'" Q DT 208 ? ? "C1'" Q DT 208 ? ? N1 Q DT 208 ? ? 110.67 108.30 2.37 0.30 N 40 3 C6 Q DT 208 ? ? C5 Q DT 208 ? ? C7 Q DT 208 ? ? 118.67 122.90 -4.23 0.60 N 41 3 "O4'" R DG 402 ? ? "C1'" R DG 402 ? ? "C2'" R DG 402 ? ? 100.88 105.90 -5.02 0.80 N 42 3 "O4'" R DG 404 ? ? "C1'" R DG 404 ? ? "C2'" R DG 404 ? ? 100.85 105.90 -5.05 0.80 N 43 3 "O4'" R DT 408 ? ? "C1'" R DT 408 ? ? N1 R DT 408 ? ? 110.96 108.30 2.66 0.30 N 44 3 C6 R DT 408 ? ? C5 R DT 408 ? ? C7 R DT 408 ? ? 118.54 122.90 -4.36 0.60 N 45 4 N1 O DT 301 ? ? "C1'" O DT 301 ? ? "C2'" O DT 301 ? ? 122.71 114.30 8.41 1.40 N 46 4 "O4'" O DG 302 ? ? "C1'" O DG 302 ? ? "C2'" O DG 302 ? ? 100.77 105.90 -5.13 0.80 N 47 4 "O4'" O DC 305 ? ? "C1'" O DC 305 ? ? N1 O DC 305 ? ? 110.71 108.30 2.41 0.30 N 48 4 "O4'" O DT 308 ? ? "C1'" O DT 308 ? ? N1 O DT 308 ? ? 110.24 108.30 1.94 0.30 N 49 4 C6 O DT 308 ? ? C5 O DT 308 ? ? C7 O DT 308 ? ? 118.40 122.90 -4.50 0.60 N 50 4 "O4'" P DT 101 ? ? "C1'" P DT 101 ? ? "C2'" P DT 101 ? ? 100.87 105.90 -5.03 0.80 N 51 4 "O4'" P DG 104 ? ? "C1'" P DG 104 ? ? "C2'" P DG 104 ? ? 101.02 105.90 -4.88 0.80 N 52 4 "O4'" P DC 105 ? ? "C1'" P DC 105 ? ? N1 P DC 105 ? ? 110.91 108.30 2.61 0.30 N 53 4 "O4'" P DT 108 ? ? "C1'" P DT 108 ? ? N1 P DT 108 ? ? 110.81 108.30 2.51 0.30 N 54 4 C6 P DT 108 ? ? C5 P DT 108 ? ? C7 P DT 108 ? ? 119.11 122.90 -3.79 0.60 N 55 4 "O4'" Q DG 204 ? ? "C1'" Q DG 204 ? ? "C2'" Q DG 204 ? ? 100.90 105.90 -5.00 0.80 N 56 4 "O4'" Q DC 205 ? ? "C1'" Q DC 205 ? ? N1 Q DC 205 ? ? 110.32 108.30 2.02 0.30 N 57 4 "O4'" Q DT 208 ? ? "C1'" Q DT 208 ? ? N1 Q DT 208 ? ? 111.27 108.30 2.97 0.30 N 58 4 C6 Q DT 208 ? ? C5 Q DT 208 ? ? C7 Q DT 208 ? ? 118.15 122.90 -4.75 0.60 N 59 4 "O4'" R DT 401 ? ? "C1'" R DT 401 ? ? "C2'" R DT 401 ? ? 100.70 105.90 -5.20 0.80 N 60 4 N1 R DT 401 ? ? "C1'" R DT 401 ? ? "C2'" R DT 401 ? ? 122.81 114.30 8.51 1.40 N 61 4 "O4'" R DG 402 ? ? "C1'" R DG 402 ? ? "C2'" R DG 402 ? ? 101.06 105.90 -4.84 0.80 N 62 4 "O4'" R DC 405 ? ? "C1'" R DC 405 ? ? N1 R DC 405 ? ? 110.86 108.30 2.56 0.30 N 63 4 "O4'" R DT 408 ? ? "C1'" R DT 408 ? ? N1 R DT 408 ? ? 110.37 108.30 2.07 0.30 N 64 4 C6 R DT 408 ? ? C5 R DT 408 ? ? C7 R DT 408 ? ? 118.86 122.90 -4.04 0.60 N 65 5 "O4'" O DG 304 ? ? "C1'" O DG 304 ? ? "C2'" O DG 304 ? ? 100.88 105.90 -5.02 0.80 N 66 5 "O4'" O DT 308 ? ? "C1'" O DT 308 ? ? N1 O DT 308 ? ? 110.39 108.30 2.09 0.30 N 67 5 C6 O DT 308 ? ? C5 O DT 308 ? ? C7 O DT 308 ? ? 118.65 122.90 -4.25 0.60 N 68 5 "O4'" P DG 104 ? ? "C1'" P DG 104 ? ? "C2'" P DG 104 ? ? 101.06 105.90 -4.84 0.80 N 69 5 "O4'" P DC 105 ? ? "C1'" P DC 105 ? ? N1 P DC 105 ? ? 110.67 108.30 2.37 0.30 N 70 5 "O4'" P DT 108 ? ? "C1'" P DT 108 ? ? N1 P DT 108 ? ? 110.64 108.30 2.34 0.30 N 71 5 C6 P DT 108 ? ? C5 P DT 108 ? ? C7 P DT 108 ? ? 118.74 122.90 -4.16 0.60 N 72 5 "O4'" Q DG 204 ? ? "C1'" Q DG 204 ? ? "C2'" Q DG 204 ? ? 100.89 105.90 -5.01 0.80 N 73 5 "O4'" Q DT 208 ? ? "C1'" Q DT 208 ? ? N1 Q DT 208 ? ? 110.52 108.30 2.22 0.30 N 74 5 C6 Q DT 208 ? ? C5 Q DT 208 ? ? C7 Q DT 208 ? ? 118.68 122.90 -4.22 0.60 N 75 5 "O4'" R DG 404 ? ? "C1'" R DG 404 ? ? "C2'" R DG 404 ? ? 101.00 105.90 -4.90 0.80 N 76 5 "O4'" R DC 405 ? ? "C1'" R DC 405 ? ? N1 R DC 405 ? ? 110.35 108.30 2.05 0.30 N 77 5 "O4'" R DT 408 ? ? "C1'" R DT 408 ? ? N1 R DT 408 ? ? 110.69 108.30 2.39 0.30 N 78 5 C6 R DT 408 ? ? C5 R DT 408 ? ? C7 R DT 408 ? ? 118.88 122.90 -4.02 0.60 N 79 6 "O4'" O DC 305 ? ? "C1'" O DC 305 ? ? N1 O DC 305 ? ? 112.47 108.30 4.17 0.30 N 80 6 "O4'" O DT 308 ? ? "C1'" O DT 308 ? ? N1 O DT 308 ? ? 110.82 108.30 2.52 0.30 N 81 6 C6 O DT 308 ? ? C5 O DT 308 ? ? C7 O DT 308 ? ? 118.63 122.90 -4.27 0.60 N 82 6 "O4'" P DG 102 ? ? "C1'" P DG 102 ? ? "C2'" P DG 102 ? ? 100.97 105.90 -4.93 0.80 N 83 6 "O4'" P DG 104 ? ? "C1'" P DG 104 ? ? "C2'" P DG 104 ? ? 100.90 105.90 -5.00 0.80 N 84 6 "O4'" P DC 105 ? ? "C1'" P DC 105 ? ? N1 P DC 105 ? ? 110.40 108.30 2.10 0.30 N 85 6 "O4'" P DT 108 ? ? "C1'" P DT 108 ? ? N1 P DT 108 ? ? 110.71 108.30 2.41 0.30 N 86 6 C6 P DT 108 ? ? C5 P DT 108 ? ? C7 P DT 108 ? ? 118.65 122.90 -4.25 0.60 N 87 6 "O4'" Q DG 204 ? ? "C1'" Q DG 204 ? ? "C2'" Q DG 204 ? ? 100.89 105.90 -5.01 0.80 N 88 6 "O4'" Q DC 205 ? ? "C1'" Q DC 205 ? ? N1 Q DC 205 ? ? 110.12 108.30 1.82 0.30 N 89 6 "O4'" Q DT 208 ? ? "C1'" Q DT 208 ? ? N1 Q DT 208 ? ? 110.73 108.30 2.43 0.30 N 90 6 C6 Q DT 208 ? ? C5 Q DT 208 ? ? C7 Q DT 208 ? ? 118.95 122.90 -3.95 0.60 N 91 6 "O4'" R DG 404 ? ? "C1'" R DG 404 ? ? "C2'" R DG 404 ? ? 100.95 105.90 -4.95 0.80 N 92 6 "O4'" R DC 405 ? ? "C1'" R DC 405 ? ? N1 R DC 405 ? ? 110.63 108.30 2.33 0.30 N 93 6 "O4'" R DT 408 ? ? "C1'" R DT 408 ? ? N1 R DT 408 ? ? 110.55 108.30 2.25 0.30 N 94 6 C6 R DT 408 ? ? C5 R DT 408 ? ? C7 R DT 408 ? ? 118.77 122.90 -4.13 0.60 N 95 7 "O4'" O DT 308 ? ? "C1'" O DT 308 ? ? N1 O DT 308 ? ? 110.76 108.30 2.46 0.30 N 96 7 C6 O DT 308 ? ? C5 O DT 308 ? ? C7 O DT 308 ? ? 118.63 122.90 -4.27 0.60 N 97 7 N1 P DT 101 ? ? "C1'" P DT 101 ? ? "C2'" P DT 101 ? ? 122.77 114.30 8.47 1.40 N 98 7 "O4'" P DG 104 ? ? "C1'" P DG 104 ? ? "C2'" P DG 104 ? ? 100.81 105.90 -5.09 0.80 N 99 7 "O4'" P DT 108 ? ? "C1'" P DT 108 ? ? N1 P DT 108 ? ? 110.84 108.30 2.54 0.30 N 100 7 C6 P DT 108 ? ? C5 P DT 108 ? ? C7 P DT 108 ? ? 118.60 122.90 -4.30 0.60 N 101 7 "O4'" Q DT 208 ? ? "C1'" Q DT 208 ? ? N1 Q DT 208 ? ? 110.82 108.30 2.52 0.30 N 102 7 C6 Q DT 208 ? ? C5 Q DT 208 ? ? C7 Q DT 208 ? ? 118.74 122.90 -4.16 0.60 N 103 7 "O4'" R DG 402 ? ? "C1'" R DG 402 ? ? "C2'" R DG 402 ? ? 100.85 105.90 -5.05 0.80 N 104 7 "O4'" R DG 404 ? ? "C1'" R DG 404 ? ? "C2'" R DG 404 ? ? 100.99 105.90 -4.91 0.80 N 105 7 "O4'" R DT 408 ? ? "C1'" R DT 408 ? ? N1 R DT 408 ? ? 110.47 108.30 2.17 0.30 N 106 7 C6 R DT 408 ? ? C5 R DT 408 ? ? C7 R DT 408 ? ? 118.80 122.90 -4.10 0.60 N 107 8 "O4'" O DG 304 ? ? "C1'" O DG 304 ? ? "C2'" O DG 304 ? ? 101.10 105.90 -4.80 0.80 N 108 8 "O4'" O DT 308 ? ? "C1'" O DT 308 ? ? N1 O DT 308 ? ? 110.65 108.30 2.35 0.30 N 109 8 C6 O DT 308 ? ? C5 O DT 308 ? ? C7 O DT 308 ? ? 118.71 122.90 -4.19 0.60 N 110 8 "O4'" P DG 102 ? ? "C1'" P DG 102 ? ? "C2'" P DG 102 ? ? 100.88 105.90 -5.02 0.80 N 111 8 "O4'" P DG 104 ? ? "C1'" P DG 104 ? ? "C2'" P DG 104 ? ? 101.00 105.90 -4.90 0.80 N 112 8 "O4'" P DT 108 ? ? "C1'" P DT 108 ? ? N1 P DT 108 ? ? 110.53 108.30 2.23 0.30 N 113 8 C6 P DT 108 ? ? C5 P DT 108 ? ? C7 P DT 108 ? ? 118.60 122.90 -4.30 0.60 N 114 8 "O4'" Q DG 202 ? ? "C1'" Q DG 202 ? ? "C2'" Q DG 202 ? ? 100.99 105.90 -4.91 0.80 N 115 8 C6 Q DT 208 ? ? C5 Q DT 208 ? ? C7 Q DT 208 ? ? 118.77 122.90 -4.13 0.60 N 116 8 "O4'" R DG 402 ? ? "C1'" R DG 402 ? ? "C2'" R DG 402 ? ? 101.00 105.90 -4.90 0.80 N 117 8 "O4'" R DT 408 ? ? "C1'" R DT 408 ? ? N1 R DT 408 ? ? 110.55 108.30 2.25 0.30 N 118 8 C6 R DT 408 ? ? C5 R DT 408 ? ? C7 R DT 408 ? ? 118.61 122.90 -4.29 0.60 N 119 9 "O4'" O DT 301 ? ? "C1'" O DT 301 ? ? "C2'" O DT 301 ? ? 101.06 105.90 -4.84 0.80 N 120 9 "O4'" O DG 302 ? ? "C1'" O DG 302 ? ? "C2'" O DG 302 ? ? 101.04 105.90 -4.86 0.80 N 121 9 "O4'" O DG 304 ? ? "C1'" O DG 304 ? ? "C2'" O DG 304 ? ? 100.94 105.90 -4.96 0.80 N 122 9 "O4'" O DC 305 ? ? "C1'" O DC 305 ? ? N1 O DC 305 ? ? 110.85 108.30 2.55 0.30 N 123 9 "O4'" O DT 308 ? ? "C1'" O DT 308 ? ? N1 O DT 308 ? ? 110.83 108.30 2.53 0.30 N 124 9 C6 O DT 308 ? ? C5 O DT 308 ? ? C7 O DT 308 ? ? 118.64 122.90 -4.26 0.60 N 125 9 "O4'" P DG 104 ? ? "C1'" P DG 104 ? ? "C2'" P DG 104 ? ? 101.04 105.90 -4.86 0.80 N 126 9 "O4'" P DT 108 ? ? "C1'" P DT 108 ? ? N1 P DT 108 ? ? 110.68 108.30 2.38 0.30 N 127 9 C6 P DT 108 ? ? C5 P DT 108 ? ? C7 P DT 108 ? ? 118.51 122.90 -4.39 0.60 N 128 9 "O4'" Q DG 202 ? ? "C1'" Q DG 202 ? ? "C2'" Q DG 202 ? ? 101.02 105.90 -4.88 0.80 N 129 9 "O4'" Q DG 204 ? ? "C1'" Q DG 204 ? ? "C2'" Q DG 204 ? ? 101.05 105.90 -4.85 0.80 N 130 9 "O4'" Q DT 208 ? ? "C1'" Q DT 208 ? ? N1 Q DT 208 ? ? 110.58 108.30 2.28 0.30 N 131 9 C6 Q DT 208 ? ? C5 Q DT 208 ? ? C7 Q DT 208 ? ? 118.64 122.90 -4.26 0.60 N 132 9 "O4'" R DG 402 ? ? "C1'" R DG 402 ? ? "C2'" R DG 402 ? ? 100.84 105.90 -5.06 0.80 N 133 9 "O4'" R DG 404 ? ? "C1'" R DG 404 ? ? "C2'" R DG 404 ? ? 100.88 105.90 -5.02 0.80 N 134 9 "O4'" R DC 405 ? ? "C1'" R DC 405 ? ? N1 R DC 405 ? ? 111.84 108.30 3.54 0.30 N 135 9 "O4'" R DT 408 ? ? "C1'" R DT 408 ? ? N1 R DT 408 ? ? 111.01 108.30 2.71 0.30 N 136 9 C6 R DT 408 ? ? C5 R DT 408 ? ? C7 R DT 408 ? ? 118.35 122.90 -4.55 0.60 N 137 10 "O4'" O DG 302 ? ? "C1'" O DG 302 ? ? "C2'" O DG 302 ? ? 101.03 105.90 -4.87 0.80 N 138 10 "O4'" O DG 304 ? ? "C1'" O DG 304 ? ? "C2'" O DG 304 ? ? 101.07 105.90 -4.83 0.80 N 139 10 "O4'" O DC 305 ? ? "C1'" O DC 305 ? ? N1 O DC 305 ? ? 112.52 108.30 4.22 0.30 N 140 10 "O4'" O DT 308 ? ? "C1'" O DT 308 ? ? N1 O DT 308 ? ? 110.81 108.30 2.51 0.30 N 141 10 C6 O DT 308 ? ? C5 O DT 308 ? ? C7 O DT 308 ? ? 118.47 122.90 -4.43 0.60 N 142 10 "O4'" P DG 104 ? ? "C1'" P DG 104 ? ? "C2'" P DG 104 ? ? 101.08 105.90 -4.82 0.80 N 143 10 "O4'" P DT 108 ? ? "C1'" P DT 108 ? ? N1 P DT 108 ? ? 110.61 108.30 2.31 0.30 N 144 10 C6 P DT 108 ? ? C5 P DT 108 ? ? C7 P DT 108 ? ? 118.34 122.90 -4.56 0.60 N 145 10 "O4'" Q DT 201 ? ? "C1'" Q DT 201 ? ? N1 Q DT 201 ? ? 110.68 108.30 2.38 0.30 N 146 10 "O4'" Q DG 202 ? ? "C1'" Q DG 202 ? ? "C2'" Q DG 202 ? ? 100.95 105.90 -4.95 0.80 N 147 10 "O4'" Q DG 204 ? ? "C1'" Q DG 204 ? ? "C2'" Q DG 204 ? ? 100.99 105.90 -4.91 0.80 N 148 10 "O4'" Q DC 205 ? ? "C1'" Q DC 205 ? ? N1 Q DC 205 ? ? 112.13 108.30 3.83 0.30 N 149 10 "O4'" Q DT 208 ? ? "C1'" Q DT 208 ? ? N1 Q DT 208 ? ? 110.74 108.30 2.44 0.30 N 150 10 C6 Q DT 208 ? ? C5 Q DT 208 ? ? C7 Q DT 208 ? ? 118.64 122.90 -4.26 0.60 N 151 10 "O4'" R DG 404 ? ? "C1'" R DG 404 ? ? "C2'" R DG 404 ? ? 100.77 105.90 -5.13 0.80 N 152 10 "O4'" R DC 405 ? ? "C1'" R DC 405 ? ? N1 R DC 405 ? ? 110.91 108.30 2.61 0.30 N 153 10 "O4'" R DT 408 ? ? "C1'" R DT 408 ? ? N1 R DT 408 ? ? 110.73 108.30 2.43 0.30 N 154 10 C6 R DT 408 ? ? C5 R DT 408 ? ? C7 R DT 408 ? ? 118.45 122.90 -4.45 0.60 N # _pdbx_nmr_ensemble.entry_id 1EVO _pdbx_nmr_ensemble.conformers_calculated_total_number 10 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'all calculated structures submitted' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1EVO _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '10 mM sodium phosphate, 0.2 mM EDTA and 200 mM NaCl' '90% H2O/10% D2O' 2 '10 mM sodium phosphate, 0.2 mM EDTA and 200 mM NaCl' D2O # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 ? 1 7.0 ? atm K 2 ? 1 7.0 ? atm K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D NOESY' 2 2 2 '2D NOESY' 3 2 2 '2D TOCSY' 4 2 2 DQF-COSY # _pdbx_nmr_details.entry_id 1EVO _pdbx_nmr_details.text 'Temperatyre dependent 1D spectra. Temperature was varied between -5 and 50 C' # _pdbx_nmr_refine.entry_id 1EVO _pdbx_nmr_refine.method 'Relaxaxtion matrix refinement' _pdbx_nmr_refine.details ;After simulated annealing-restrained molecular dynamics 16 structures for the quadruplex were selected on the basis of proper covalent geometries, symmetries and low energies for relaxation matrix refinement using IRMA (Iterative Relxation Matrix Analysis) protocol in DISCOVER. The input data included NOEs from 80, 120, 200 and 300 ms NOESY spectra. Three to four sets of calculations were performed by choosing different reference peaks for intensity normalizations. The isotropic correlation time was optimized for best NOE fits, which yielded a value of 5.0 ns.Finally 10 convergent quadruplex structures were selected on the basis of R1-factor and symmetry ; _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal VNMR 6.1 collection Varian 1 VNMR 6.1 processing Varian 2 Felix '230 and 97' processing BIOSYM 3 Discover 3.1 'structure solution' BIOSYM 4 IRMA 2.3 refinement BIOSYM 5 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DC OP3 O N N 1 DC P P N N 2 DC OP1 O N N 3 DC OP2 O N N 4 DC "O5'" O N N 5 DC "C5'" C N N 6 DC "C4'" C N R 7 DC "O4'" O N N 8 DC "C3'" C N S 9 DC "O3'" O N N 10 DC "C2'" C N N 11 DC "C1'" C N R 12 DC N1 N N N 13 DC C2 C N N 14 DC O2 O N N 15 DC N3 N N N 16 DC C4 C N N 17 DC N4 N N N 18 DC C5 C N N 19 DC C6 C N N 20 DC HOP3 H N N 21 DC HOP2 H N N 22 DC "H5'" H N N 23 DC "H5''" H N N 24 DC "H4'" H N N 25 DC "H3'" H N N 26 DC "HO3'" H N N 27 DC "H2'" H N N 28 DC "H2''" H N N 29 DC "H1'" H N N 30 DC H41 H N N 31 DC H42 H N N 32 DC H5 H N N 33 DC H6 H N N 34 DG OP3 O N N 35 DG P P N N 36 DG OP1 O N N 37 DG OP2 O N N 38 DG "O5'" O N N 39 DG "C5'" C N N 40 DG "C4'" C N R 41 DG "O4'" O N N 42 DG "C3'" C N S 43 DG "O3'" O N N 44 DG "C2'" C N N 45 DG "C1'" C N R 46 DG N9 N Y N 47 DG C8 C Y N 48 DG N7 N Y N 49 DG C5 C Y N 50 DG C6 C N N 51 DG O6 O N N 52 DG N1 N N N 53 DG C2 C N N 54 DG N2 N N N 55 DG N3 N N N 56 DG C4 C Y N 57 DG HOP3 H N N 58 DG HOP2 H N N 59 DG "H5'" H N N 60 DG "H5''" H N N 61 DG "H4'" H N N 62 DG "H3'" H N N 63 DG "HO3'" H N N 64 DG "H2'" H N N 65 DG "H2''" H N N 66 DG "H1'" H N N 67 DG H8 H N N 68 DG H1 H N N 69 DG H21 H N N 70 DG H22 H N N 71 DT OP3 O N N 72 DT P P N N 73 DT OP1 O N N 74 DT OP2 O N N 75 DT "O5'" O N N 76 DT "C5'" C N N 77 DT "C4'" C N R 78 DT "O4'" O N N 79 DT "C3'" C N S 80 DT "O3'" O N N 81 DT "C2'" C N N 82 DT "C1'" C N R 83 DT N1 N N N 84 DT C2 C N N 85 DT O2 O N N 86 DT N3 N N N 87 DT C4 C N N 88 DT O4 O N N 89 DT C5 C N N 90 DT C7 C N N 91 DT C6 C N N 92 DT HOP3 H N N 93 DT HOP2 H N N 94 DT "H5'" H N N 95 DT "H5''" H N N 96 DT "H4'" H N N 97 DT "H3'" H N N 98 DT "HO3'" H N N 99 DT "H2'" H N N 100 DT "H2''" H N N 101 DT "H1'" H N N 102 DT H3 H N N 103 DT H71 H N N 104 DT H72 H N N 105 DT H73 H N N 106 DT H6 H N N 107 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DC OP3 P sing N N 1 DC OP3 HOP3 sing N N 2 DC P OP1 doub N N 3 DC P OP2 sing N N 4 DC P "O5'" sing N N 5 DC OP2 HOP2 sing N N 6 DC "O5'" "C5'" sing N N 7 DC "C5'" "C4'" sing N N 8 DC "C5'" "H5'" sing N N 9 DC "C5'" "H5''" sing N N 10 DC "C4'" "O4'" sing N N 11 DC "C4'" "C3'" sing N N 12 DC "C4'" "H4'" sing N N 13 DC "O4'" "C1'" sing N N 14 DC "C3'" "O3'" sing N N 15 DC "C3'" "C2'" sing N N 16 DC "C3'" "H3'" sing N N 17 DC "O3'" "HO3'" sing N N 18 DC "C2'" "C1'" sing N N 19 DC "C2'" "H2'" sing N N 20 DC "C2'" "H2''" sing N N 21 DC "C1'" N1 sing N N 22 DC "C1'" "H1'" sing N N 23 DC N1 C2 sing N N 24 DC N1 C6 sing N N 25 DC C2 O2 doub N N 26 DC C2 N3 sing N N 27 DC N3 C4 doub N N 28 DC C4 N4 sing N N 29 DC C4 C5 sing N N 30 DC N4 H41 sing N N 31 DC N4 H42 sing N N 32 DC C5 C6 doub N N 33 DC C5 H5 sing N N 34 DC C6 H6 sing N N 35 DG OP3 P sing N N 36 DG OP3 HOP3 sing N N 37 DG P OP1 doub N N 38 DG P OP2 sing N N 39 DG P "O5'" sing N N 40 DG OP2 HOP2 sing N N 41 DG "O5'" "C5'" sing N N 42 DG "C5'" "C4'" sing N N 43 DG "C5'" "H5'" sing N N 44 DG "C5'" "H5''" sing N N 45 DG "C4'" "O4'" sing N N 46 DG "C4'" "C3'" sing N N 47 DG "C4'" "H4'" sing N N 48 DG "O4'" "C1'" sing N N 49 DG "C3'" "O3'" sing N N 50 DG "C3'" "C2'" sing N N 51 DG "C3'" "H3'" sing N N 52 DG "O3'" "HO3'" sing N N 53 DG "C2'" "C1'" sing N N 54 DG "C2'" "H2'" sing N N 55 DG "C2'" "H2''" sing N N 56 DG "C1'" N9 sing N N 57 DG "C1'" "H1'" sing N N 58 DG N9 C8 sing Y N 59 DG N9 C4 sing Y N 60 DG C8 N7 doub Y N 61 DG C8 H8 sing N N 62 DG N7 C5 sing Y N 63 DG C5 C6 sing N N 64 DG C5 C4 doub Y N 65 DG C6 O6 doub N N 66 DG C6 N1 sing N N 67 DG N1 C2 sing N N 68 DG N1 H1 sing N N 69 DG C2 N2 sing N N 70 DG C2 N3 doub N N 71 DG N2 H21 sing N N 72 DG N2 H22 sing N N 73 DG N3 C4 sing N N 74 DT OP3 P sing N N 75 DT OP3 HOP3 sing N N 76 DT P OP1 doub N N 77 DT P OP2 sing N N 78 DT P "O5'" sing N N 79 DT OP2 HOP2 sing N N 80 DT "O5'" "C5'" sing N N 81 DT "C5'" "C4'" sing N N 82 DT "C5'" "H5'" sing N N 83 DT "C5'" "H5''" sing N N 84 DT "C4'" "O4'" sing N N 85 DT "C4'" "C3'" sing N N 86 DT "C4'" "H4'" sing N N 87 DT "O4'" "C1'" sing N N 88 DT "C3'" "O3'" sing N N 89 DT "C3'" "C2'" sing N N 90 DT "C3'" "H3'" sing N N 91 DT "O3'" "HO3'" sing N N 92 DT "C2'" "C1'" sing N N 93 DT "C2'" "H2'" sing N N 94 DT "C2'" "H2''" sing N N 95 DT "C1'" N1 sing N N 96 DT "C1'" "H1'" sing N N 97 DT N1 C2 sing N N 98 DT N1 C6 sing N N 99 DT C2 O2 doub N N 100 DT C2 N3 sing N N 101 DT N3 C4 sing N N 102 DT N3 H3 sing N N 103 DT C4 O4 doub N N 104 DT C4 C5 sing N N 105 DT C5 C7 sing N N 106 DT C5 C6 doub N N 107 DT C7 H71 sing N N 108 DT C7 H72 sing N N 109 DT C7 H73 sing N N 110 DT C6 H6 sing N N 111 # _ndb_struct_conf_na.entry_id 1EVO _ndb_struct_conf_na.feature 'quadruple helix' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.model UNITYPLUS _pdbx_nmr_spectrometer.field_strength 600 # _atom_sites.entry_id 1EVO _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_