data_1F6C # _entry.id 1F6C # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1F6C pdb_00001f6c 10.2210/pdb1f6c/pdb NDB BD0040 ? ? RCSB RCSB011297 ? ? WWPDB D_1000011297 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-08-28 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1F6C _pdbx_database_status.recvd_initial_deposition_date 2000-06-21 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1F69 'B-DNA HEXAMER GGCGCC WITH COBALT HEXAMINE' unspecified PDB 1F6E 'A-DNA HEXAMER GGCGM5CC' unspecified PDB 1F6I 'E-DNA HEXAMER GGCGM5CC' unspecified PDB 1F6J 'E-DNA HEXAMER GGCGBR5CC' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Vargason, J.M.' 1 'Eichman, B.F.' 2 'Ho, P.S.' 3 # _citation.id primary _citation.title 'The extended and eccentric E-DNA structure induced by cytosine methylation or bromination.' _citation.journal_abbrev Nat.Struct.Biol. _citation.journal_volume 7 _citation.page_first 758 _citation.page_last 761 _citation.year 2000 _citation.journal_id_ASTM NSBIEW _citation.country US _citation.journal_id_ISSN 1072-8368 _citation.journal_id_CSD 2024 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10966645 _citation.pdbx_database_id_DOI 10.1038/78985 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Vargason, J.M.' 1 ? primary 'Eichman, B.F.' 2 ? primary 'Ho, P.S.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*GP*CP*GP*CP*C)-3') ; 1810.205 5 ? ? ? ? 2 non-polymer syn SPERMINE 202.340 2 ? ? ? ? 3 water nat water 18.015 16 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DG)(DC)(DG)(DC)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GGCGCC _entity_poly.pdbx_strand_id A,B,C,D,E _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 SPERMINE SPM 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DC n 1 6 DC n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 SPM non-polymer . SPERMINE ? 'C10 H26 N4' 202.340 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DC 6 6 6 DC C A . n B 1 1 DG 1 7 7 DG G B . n B 1 2 DG 2 8 8 DG G B . n B 1 3 DC 3 9 9 DC C B . n B 1 4 DG 4 10 10 DG G B . n B 1 5 DC 5 11 11 DC C B . n B 1 6 DC 6 12 12 DC C B . n C 1 1 DG 1 13 13 DG G C . n C 1 2 DG 2 14 14 DG G C . n C 1 3 DC 3 15 15 DC C C . n C 1 4 DG 4 16 16 DG G C . n C 1 5 DC 5 17 17 DC C C . n C 1 6 DC 6 18 18 DC C C . n D 1 1 DG 1 19 19 DG G D . n D 1 2 DG 2 20 20 DG G D . n D 1 3 DC 3 21 21 DC C D . n D 1 4 DG 4 22 22 DG G D . n D 1 5 DC 5 23 23 DC C D . n D 1 6 DC 6 24 24 DC C D . n E 1 1 DG 1 25 25 DG G E . n E 1 2 DG 2 26 26 DG G E . n E 1 3 DC 3 27 27 DC C E . n E 1 4 DG 4 28 28 DG G E . n E 1 5 DC 5 29 29 DC C E . n E 1 6 DC 6 30 30 DC C E . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 SPM 1 32 32 SPM SPM B . G 2 SPM 1 31 31 SPM SPM D . H 3 HOH 1 34 34 HOH HOH A . H 3 HOH 2 36 36 HOH HOH A . H 3 HOH 3 38 38 HOH HOH A . H 3 HOH 4 39 39 HOH HOH A . I 3 HOH 1 33 33 HOH HOH B . I 3 HOH 2 42 42 HOH HOH B . I 3 HOH 3 44 44 HOH HOH B . J 3 HOH 1 35 35 HOH HOH C . J 3 HOH 2 37 37 HOH HOH C . J 3 HOH 3 40 40 HOH HOH C . J 3 HOH 4 41 41 HOH HOH C . J 3 HOH 5 43 43 HOH HOH C . J 3 HOH 6 45 45 HOH HOH C . J 3 HOH 7 46 46 HOH HOH C . J 3 HOH 8 47 47 HOH HOH C . J 3 HOH 9 48 48 HOH HOH C . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 X-PLOR refinement 3.851 ? 2 d*TREK 'data reduction' . ? 3 d*TREK 'data scaling' . ? 4 # _cell.entry_id 1F6C _cell.length_a 71.500 _cell.length_b 71.500 _cell.length_c 59.630 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 40 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1F6C _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting tetragonal _symmetry.Int_Tables_number 92 # _exptl.entry_id 1F6C _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 69.23 _exptl_crystal.density_Matthews 4.00 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details 'MGCL2, SPERMINE, SODIUM CACODYLATE, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'SODIUM CACODYLATE' ? ? ? 1 2 1 SPERMINE ? ? ? 1 3 1 MGCL2 ? ? ? 1 4 2 MGCL2 ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 298 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 1998-10-30 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU300' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1F6C _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 500 _reflns.d_resolution_high 2.7 _reflns.number_obs 4526 _reflns.number_all 4526 _reflns.percent_possible_obs 98.8 _reflns.pdbx_Rmerge_I_obs 0.0570000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 18.7 _reflns.B_iso_Wilson_estimate 12.0 _reflns.pdbx_redundancy 7.0 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.7 _reflns_shell.d_res_low 2.82 _reflns_shell.percent_possible_all 96.7 _reflns_shell.Rmerge_I_obs 0.3950000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 6.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1F6C _refine.ls_number_reflns_obs 4304 _refine.ls_number_reflns_all 4316 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.0 _refine.ls_d_res_high 2.7 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.2320000 _refine.ls_R_factor_all 0.2330000 _refine.ls_R_factor_R_work 0.2260000 _refine.ls_R_factor_R_free 0.2880000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.4 _refine.ls_number_reflns_R_free 447 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] -9.9024 _refine.aniso_B[2][2] -9.9024 _refine.aniso_B[3][3] 19.8048 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'ANISOTROPIC B VALUES WERE APPLIED TO FCALC DURING REFINEMENT IN ORDER TO SCALE FCALC TO FOBS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'PARKINSON ET AL.' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 600 _refine_hist.pdbx_number_atoms_ligand 21 _refine_hist.number_atoms_solvent 16 _refine_hist.number_atoms_total 637 _refine_hist.d_res_high 2.7 _refine_hist.d_res_low 8.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.0 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1F6C _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1F6C _struct.title 'CRYSTAL STRUCTURE OF THE B-DNA HEXAMER GGCGCC WITH SPERMINE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1F6C _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'B-DNA, E-DNA, DOUBLE HELIX, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 2 ? G N N 2 ? H N N 3 ? I N N 3 ? J N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1F6C _struct_ref.pdbx_db_accession 1F6C _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1F6C A 1 ? 6 ? 1F6C 1 ? 6 ? 1 6 2 1 1F6C B 1 ? 6 ? 1F6C 7 ? 12 ? 7 12 3 1 1F6C C 1 ? 6 ? 1F6C 13 ? 18 ? 13 18 4 1 1F6C D 1 ? 6 ? 1F6C 19 ? 24 ? 19 24 5 1 1F6C E 1 ? 6 ? 1F6C 25 ? 30 ? 25 30 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 3 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2 A,H 2 1 B,C,F,I,J 3 1 D,E,G # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_556 y,x,-z+1 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 59.6300000000 # loop_ _struct_biol.id 1 2 3 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? F SPM . C7 ? ? ? 1_555 F SPM . C7 ? ? B SPM 32 B SPM 32 7_466 ? ? ? ? ? ? ? 1.571 ? ? hydrog1 hydrog ? ? B DG 1 N1 ? ? ? 1_555 C DC 6 N3 ? ? B DG 7 C DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DG 1 N2 ? ? ? 1_555 C DC 6 O2 ? ? B DG 7 C DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DG 1 O6 ? ? ? 1_555 C DC 6 N4 ? ? B DG 7 C DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DG 2 N1 ? ? ? 1_555 C DC 5 N3 ? ? B DG 8 C DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DG 2 N2 ? ? ? 1_555 C DC 5 O2 ? ? B DG 8 C DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DG 2 O6 ? ? ? 1_555 C DC 5 N4 ? ? B DG 8 C DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DC 3 N3 ? ? ? 1_555 C DG 4 N1 ? ? B DC 9 C DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DC 3 N4 ? ? ? 1_555 C DG 4 O6 ? ? B DC 9 C DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DC 3 O2 ? ? ? 1_555 C DG 4 N2 ? ? B DC 9 C DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DG 4 N1 ? ? ? 1_555 C DC 3 N3 ? ? B DG 10 C DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DG 4 N2 ? ? ? 1_555 C DC 3 O2 ? ? B DG 10 C DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DG 4 O6 ? ? ? 1_555 C DC 3 N4 ? ? B DG 10 C DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DC 5 N3 ? ? ? 1_555 C DG 2 N1 ? ? B DC 11 C DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DC 5 N4 ? ? ? 1_555 C DG 2 O6 ? ? B DC 11 C DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DC 5 O2 ? ? ? 1_555 C DG 2 N2 ? ? B DC 11 C DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DC 6 N3 ? ? ? 1_555 C DG 1 N1 ? ? B DC 12 C DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DC 6 N4 ? ? ? 1_555 C DG 1 O6 ? ? B DC 12 C DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DC 6 O2 ? ? ? 1_555 C DG 1 N2 ? ? B DC 12 C DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? D DG 1 N1 ? ? ? 1_555 E DC 6 N3 ? ? D DG 19 E DC 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? D DG 1 N2 ? ? ? 1_555 E DC 6 O2 ? ? D DG 19 E DC 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? D DG 1 O6 ? ? ? 1_555 E DC 6 N4 ? ? D DG 19 E DC 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? D DG 2 N1 ? ? ? 1_555 E DC 5 N3 ? ? D DG 20 E DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? D DG 2 N2 ? ? ? 1_555 E DC 5 O2 ? ? D DG 20 E DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? D DG 2 O6 ? ? ? 1_555 E DC 5 N4 ? ? D DG 20 E DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? D DC 3 N3 ? ? ? 1_555 E DG 4 N1 ? ? D DC 21 E DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? D DC 3 N4 ? ? ? 1_555 E DG 4 O6 ? ? D DC 21 E DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? D DC 3 O2 ? ? ? 1_555 E DG 4 N2 ? ? D DC 21 E DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? D DG 4 N1 ? ? ? 1_555 E DC 3 N3 ? ? D DG 22 E DC 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? D DG 4 N2 ? ? ? 1_555 E DC 3 O2 ? ? D DG 22 E DC 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? D DG 4 O6 ? ? ? 1_555 E DC 3 N4 ? ? D DG 22 E DC 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? D DC 5 N3 ? ? ? 1_555 E DG 2 N1 ? ? D DC 23 E DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? D DC 5 N4 ? ? ? 1_555 E DG 2 O6 ? ? D DC 23 E DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? D DC 5 O2 ? ? ? 1_555 E DG 2 N2 ? ? D DC 23 E DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? D DC 6 N3 ? ? ? 1_555 E DG 1 N1 ? ? D DC 24 E DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? D DC 6 N4 ? ? ? 1_555 E DG 1 O6 ? ? D DC 24 E DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? D DC 6 O2 ? ? ? 1_555 E DG 1 N2 ? ? D DC 24 E DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 6 N3 ? ? A DG 1 A DC 6 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 6 O2 ? ? A DG 1 A DC 6 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 6 N4 ? ? A DG 1 A DC 6 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 2 A DC 5 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 2 A DC 5 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 2 A DC 5 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A DC 3 N3 ? ? ? 1_555 A DG 4 N1 ? ? A DC 3 A DG 4 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A DC 3 N4 ? ? ? 1_555 A DG 4 O6 ? ? A DC 3 A DG 4 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A DC 3 O2 ? ? ? 1_555 A DG 4 N2 ? ? A DC 3 A DG 4 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DC 3 N3 ? ? A DG 4 A DC 3 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DC 3 O2 ? ? A DG 4 A DC 3 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DC 3 N4 ? ? A DG 4 A DC 3 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 2 N1 ? ? A DC 5 A DG 2 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 2 O6 ? ? A DC 5 A DG 2 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 2 N2 ? ? A DC 5 A DG 2 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A DC 6 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 6 A DG 1 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A DC 6 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 6 A DG 1 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A DC 6 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 6 A DG 1 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software D SPM 31 ? 11 'BINDING SITE FOR RESIDUE SPM D 31' AC2 Software B SPM 32 ? 8 'BINDING SITE FOR RESIDUE SPM B 32' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 DG A 1 ? DG A 1 . ? 7_556 ? 2 AC1 11 DG A 2 ? DG A 2 . ? 7_556 ? 3 AC1 11 DC A 3 ? DC A 3 . ? 1_555 ? 4 AC1 11 DC A 3 ? DC A 3 . ? 7_556 ? 5 AC1 11 DG A 4 ? DG A 4 . ? 1_555 ? 6 AC1 11 HOH H . ? HOH A 34 . ? 1_555 ? 7 AC1 11 DG B 1 ? DG B 7 . ? 4_454 ? 8 AC1 11 DG B 2 ? DG B 8 . ? 4_454 ? 9 AC1 11 DG D 1 ? DG D 19 . ? 1_555 ? 10 AC1 11 DC E 5 ? DC E 29 . ? 1_555 ? 11 AC1 11 DC E 6 ? DC E 30 . ? 1_555 ? 12 AC2 8 DC A 3 ? DC A 3 . ? 3_555 ? 13 AC2 8 DG A 4 ? DG A 4 . ? 3_555 ? 14 AC2 8 DG B 1 ? DG B 7 . ? 7_466 ? 15 AC2 8 DG B 1 ? DG B 7 . ? 1_555 ? 16 AC2 8 DG B 2 ? DG B 8 . ? 1_555 ? 17 AC2 8 DC B 3 ? DC B 9 . ? 1_555 ? 18 AC2 8 HOH I . ? HOH B 44 . ? 1_555 ? 19 AC2 8 DG C 4 ? DG C 16 . ? 1_555 ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DC OP3 O N N 1 DC P P N N 2 DC OP1 O N N 3 DC OP2 O N N 4 DC "O5'" O N N 5 DC "C5'" C N N 6 DC "C4'" C N R 7 DC "O4'" O N N 8 DC "C3'" C N S 9 DC "O3'" O N N 10 DC "C2'" C N N 11 DC "C1'" C N R 12 DC N1 N N N 13 DC C2 C N N 14 DC O2 O N N 15 DC N3 N N N 16 DC C4 C N N 17 DC N4 N N N 18 DC C5 C N N 19 DC C6 C N N 20 DC HOP3 H N N 21 DC HOP2 H N N 22 DC "H5'" H N N 23 DC "H5''" H N N 24 DC "H4'" H N N 25 DC "H3'" H N N 26 DC "HO3'" H N N 27 DC "H2'" H N N 28 DC "H2''" H N N 29 DC "H1'" H N N 30 DC H41 H N N 31 DC H42 H N N 32 DC H5 H N N 33 DC H6 H N N 34 DG OP3 O N N 35 DG P P N N 36 DG OP1 O N N 37 DG OP2 O N N 38 DG "O5'" O N N 39 DG "C5'" C N N 40 DG "C4'" C N R 41 DG "O4'" O N N 42 DG "C3'" C N S 43 DG "O3'" O N N 44 DG "C2'" C N N 45 DG "C1'" C N R 46 DG N9 N Y N 47 DG C8 C Y N 48 DG N7 N Y N 49 DG C5 C Y N 50 DG C6 C N N 51 DG O6 O N N 52 DG N1 N N N 53 DG C2 C N N 54 DG N2 N N N 55 DG N3 N N N 56 DG C4 C Y N 57 DG HOP3 H N N 58 DG HOP2 H N N 59 DG "H5'" H N N 60 DG "H5''" H N N 61 DG "H4'" H N N 62 DG "H3'" H N N 63 DG "HO3'" H N N 64 DG "H2'" H N N 65 DG "H2''" H N N 66 DG "H1'" H N N 67 DG H8 H N N 68 DG H1 H N N 69 DG H21 H N N 70 DG H22 H N N 71 HOH O O N N 72 HOH H1 H N N 73 HOH H2 H N N 74 SPM N1 N N N 75 SPM C2 C N N 76 SPM C3 C N N 77 SPM C4 C N N 78 SPM N5 N N N 79 SPM C6 C N N 80 SPM C7 C N N 81 SPM C8 C N N 82 SPM C9 C N N 83 SPM N10 N N N 84 SPM C11 C N N 85 SPM C12 C N N 86 SPM C13 C N N 87 SPM N14 N N N 88 SPM HN11 H N N 89 SPM HN12 H N N 90 SPM H21 H N N 91 SPM H22 H N N 92 SPM H31 H N N 93 SPM H32 H N N 94 SPM H41 H N N 95 SPM H42 H N N 96 SPM HN5 H N N 97 SPM H61 H N N 98 SPM H62 H N N 99 SPM H71 H N N 100 SPM H72 H N N 101 SPM H81 H N N 102 SPM H82 H N N 103 SPM H91 H N N 104 SPM H92 H N N 105 SPM HN0 H N N 106 SPM H111 H N N 107 SPM H112 H N N 108 SPM H121 H N N 109 SPM H122 H N N 110 SPM H131 H N N 111 SPM H132 H N N 112 SPM HN41 H N N 113 SPM HN42 H N N 114 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DC OP3 P sing N N 1 DC OP3 HOP3 sing N N 2 DC P OP1 doub N N 3 DC P OP2 sing N N 4 DC P "O5'" sing N N 5 DC OP2 HOP2 sing N N 6 DC "O5'" "C5'" sing N N 7 DC "C5'" "C4'" sing N N 8 DC "C5'" "H5'" sing N N 9 DC "C5'" "H5''" sing N N 10 DC "C4'" "O4'" sing N N 11 DC "C4'" "C3'" sing N N 12 DC "C4'" "H4'" sing N N 13 DC "O4'" "C1'" sing N N 14 DC "C3'" "O3'" sing N N 15 DC "C3'" "C2'" sing N N 16 DC "C3'" "H3'" sing N N 17 DC "O3'" "HO3'" sing N N 18 DC "C2'" "C1'" sing N N 19 DC "C2'" "H2'" sing N N 20 DC "C2'" "H2''" sing N N 21 DC "C1'" N1 sing N N 22 DC "C1'" "H1'" sing N N 23 DC N1 C2 sing N N 24 DC N1 C6 sing N N 25 DC C2 O2 doub N N 26 DC C2 N3 sing N N 27 DC N3 C4 doub N N 28 DC C4 N4 sing N N 29 DC C4 C5 sing N N 30 DC N4 H41 sing N N 31 DC N4 H42 sing N N 32 DC C5 C6 doub N N 33 DC C5 H5 sing N N 34 DC C6 H6 sing N N 35 DG OP3 P sing N N 36 DG OP3 HOP3 sing N N 37 DG P OP1 doub N N 38 DG P OP2 sing N N 39 DG P "O5'" sing N N 40 DG OP2 HOP2 sing N N 41 DG "O5'" "C5'" sing N N 42 DG "C5'" "C4'" sing N N 43 DG "C5'" "H5'" sing N N 44 DG "C5'" "H5''" sing N N 45 DG "C4'" "O4'" sing N N 46 DG "C4'" "C3'" sing N N 47 DG "C4'" "H4'" sing N N 48 DG "O4'" "C1'" sing N N 49 DG "C3'" "O3'" sing N N 50 DG "C3'" "C2'" sing N N 51 DG "C3'" "H3'" sing N N 52 DG "O3'" "HO3'" sing N N 53 DG "C2'" "C1'" sing N N 54 DG "C2'" "H2'" sing N N 55 DG "C2'" "H2''" sing N N 56 DG "C1'" N9 sing N N 57 DG "C1'" "H1'" sing N N 58 DG N9 C8 sing Y N 59 DG N9 C4 sing Y N 60 DG C8 N7 doub Y N 61 DG C8 H8 sing N N 62 DG N7 C5 sing Y N 63 DG C5 C6 sing N N 64 DG C5 C4 doub Y N 65 DG C6 O6 doub N N 66 DG C6 N1 sing N N 67 DG N1 C2 sing N N 68 DG N1 H1 sing N N 69 DG C2 N2 sing N N 70 DG C2 N3 doub N N 71 DG N2 H21 sing N N 72 DG N2 H22 sing N N 73 DG N3 C4 sing N N 74 HOH O H1 sing N N 75 HOH O H2 sing N N 76 SPM N1 C2 sing N N 77 SPM N1 HN11 sing N N 78 SPM N1 HN12 sing N N 79 SPM C2 C3 sing N N 80 SPM C2 H21 sing N N 81 SPM C2 H22 sing N N 82 SPM C3 C4 sing N N 83 SPM C3 H31 sing N N 84 SPM C3 H32 sing N N 85 SPM C4 N5 sing N N 86 SPM C4 H41 sing N N 87 SPM C4 H42 sing N N 88 SPM N5 C6 sing N N 89 SPM N5 HN5 sing N N 90 SPM C6 C7 sing N N 91 SPM C6 H61 sing N N 92 SPM C6 H62 sing N N 93 SPM C7 C8 sing N N 94 SPM C7 H71 sing N N 95 SPM C7 H72 sing N N 96 SPM C8 C9 sing N N 97 SPM C8 H81 sing N N 98 SPM C8 H82 sing N N 99 SPM C9 N10 sing N N 100 SPM C9 H91 sing N N 101 SPM C9 H92 sing N N 102 SPM N10 C11 sing N N 103 SPM N10 HN0 sing N N 104 SPM C11 C12 sing N N 105 SPM C11 H111 sing N N 106 SPM C11 H112 sing N N 107 SPM C12 C13 sing N N 108 SPM C12 H121 sing N N 109 SPM C12 H122 sing N N 110 SPM C13 N14 sing N N 111 SPM C13 H131 sing N N 112 SPM C13 H132 sing N N 113 SPM N14 HN41 sing N N 114 SPM N14 HN42 sing N N 115 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1F6C 'double helix' 1F6C 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 1 1_555 C DC 6 1_555 0.076 -0.138 0.163 1.543 -4.144 -1.820 1 B_DG7:DC18_C B 7 ? C 18 ? 19 1 1 B DG 2 1_555 C DC 5 1_555 0.582 -0.186 0.108 -0.211 -4.869 -1.725 2 B_DG8:DC17_C B 8 ? C 17 ? 19 1 1 B DC 3 1_555 C DG 4 1_555 0.457 -0.447 0.093 1.601 -5.984 4.576 3 B_DC9:DG16_C B 9 ? C 16 ? 19 1 1 B DG 4 1_555 C DC 3 1_555 0.461 -0.514 -0.342 -2.533 -11.745 3.918 4 B_DG10:DC15_C B 10 ? C 15 ? 19 1 1 B DC 5 1_555 C DG 2 1_555 -0.299 -0.534 0.186 -4.650 -4.573 -4.387 5 B_DC11:DG14_C B 11 ? C 14 ? 19 1 1 B DC 6 1_555 C DG 1 1_555 -0.232 -0.332 0.176 -1.597 2.752 0.300 6 B_DC12:DG13_C B 12 ? C 13 ? 19 1 1 E DG 1 1_555 D DC 6 1_555 -0.962 -0.640 0.255 1.794 -5.826 -0.573 7 E_DG25:DC24_D E 25 ? D 24 ? 19 1 1 E DG 2 1_555 D DC 5 1_555 -0.614 -0.183 0.247 5.111 2.409 -2.208 8 E_DG26:DC23_D E 26 ? D 23 ? 19 1 1 E DC 3 1_555 D DG 4 1_555 0.290 -0.209 0.085 2.526 -8.369 -6.676 9 E_DC27:DG22_D E 27 ? D 22 ? 19 1 1 E DG 4 1_555 D DC 3 1_555 1.026 -0.420 0.103 -5.506 -4.485 -6.549 10 E_DG28:DC21_D E 28 ? D 21 ? 19 1 1 E DC 5 1_555 D DG 2 1_555 0.819 -0.673 0.232 1.558 -2.965 1.474 11 E_DC29:DG20_D E 29 ? D 20 ? 19 1 1 E DC 6 1_555 D DG 1 1_555 0.747 -0.590 0.335 -6.280 -3.817 4.322 12 E_DC30:DG19_D E 30 ? D 19 ? 19 1 1 A DG 1 1_555 A DC 6 7_556 -0.423 -0.470 -0.156 1.108 5.423 -3.407 13 A_DG1:DC6_A A 1 ? A 6 ? 19 1 1 A DG 2 1_555 A DC 5 7_556 0.175 -0.418 -0.291 -9.666 -7.442 -1.629 14 A_DG2:DC5_A A 2 ? A 5 ? 19 1 1 A DC 3 1_555 A DG 4 7_556 0.434 -0.315 -0.184 0.180 -7.389 2.339 15 A_DC3:DG4_A A 3 ? A 4 ? 19 1 1 A DG 4 1_555 A DC 3 7_556 -0.434 -0.315 -0.184 -0.180 -7.389 2.339 16 A_DG4:DC3_A A 4 ? A 3 ? 19 1 1 A DC 5 1_555 A DG 2 7_556 -0.175 -0.418 -0.291 9.666 -7.442 -1.629 17 A_DC5:DG2_A A 5 ? A 2 ? 19 1 1 A DC 6 1_555 A DG 1 7_556 0.423 -0.470 -0.156 -1.108 5.423 -3.407 18 A_DC6:DG1_A A 6 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DG 1 1_555 C DC 6 1_555 B DG 2 1_555 C DC 5 1_555 -0.393 -0.313 3.562 0.380 -1.316 35.011 -0.304 0.715 3.566 -2.187 -0.631 35.037 1 BB_DG7DG8:DC17DC18_CC B 7 ? C 18 ? B 8 ? C 17 ? 1 B DG 2 1_555 C DC 5 1_555 B DC 3 1_555 C DG 4 1_555 1.057 -0.209 3.266 3.348 3.245 36.249 -0.785 -1.220 3.317 5.189 -5.354 36.537 2 BB_DG8DC9:DG16DC17_CC B 8 ? C 17 ? B 9 ? C 16 ? 1 B DC 3 1_555 C DG 4 1_555 B DG 4 1_555 C DC 3 1_555 -0.671 0.578 3.510 1.867 7.482 31.601 -0.393 1.554 3.507 13.488 -3.366 32.505 3 BB_DC9DG10:DC15DG16_CC B 9 ? C 16 ? B 10 ? C 15 ? 1 B DG 4 1_555 C DC 3 1_555 B DC 5 1_555 C DG 2 1_555 -0.502 -0.234 3.365 -6.285 3.090 32.064 -0.967 -0.235 3.364 5.512 11.212 32.801 4 BB_DG10DC11:DG14DC15_CC B 10 ? C 15 ? B 11 ? C 14 ? 1 B DC 5 1_555 C DG 2 1_555 B DC 6 1_555 C DG 1 1_555 0.866 -0.237 3.261 -0.836 3.336 34.301 -0.913 -1.590 3.203 5.638 1.413 34.468 5 BB_DC11DC12:DG13DG14_CC B 11 ? C 14 ? B 12 ? C 13 ? 1 B DC 6 1_555 C DG 1 1_555 E DG 1 1_555 D DC 6 1_555 -0.186 0.290 3.392 1.783 0.616 -27.166 -0.776 0.069 3.389 -1.310 3.791 -27.230 6 BE_DC12DG25:DC24DG13_DC B 12 ? C 13 ? E 25 ? D 24 ? 1 E DG 1 1_555 D DC 6 1_555 E DG 2 1_555 D DC 5 1_555 -0.622 -0.796 3.416 -2.406 -1.558 32.437 -1.132 0.667 3.486 -2.783 4.296 32.560 7 EE_DG25DG26:DC23DC24_DD E 25 ? D 24 ? E 26 ? D 23 ? 1 E DG 2 1_555 D DC 5 1_555 E DC 3 1_555 D DG 4 1_555 0.335 -0.481 3.390 2.699 2.440 41.271 -0.950 -0.175 3.372 3.453 -3.820 41.424 8 EE_DG26DC27:DG22DC23_DD E 26 ? D 23 ? E 27 ? D 22 ? 1 E DC 3 1_555 D DG 4 1_555 E DG 4 1_555 D DC 3 1_555 -0.113 0.886 3.535 -0.448 4.005 39.556 0.794 0.109 3.606 5.899 0.661 39.752 9 EE_DC27DG28:DC21DG22_DD E 27 ? D 22 ? E 28 ? D 21 ? 1 E DG 4 1_555 D DC 3 1_555 E DC 5 1_555 D DG 2 1_555 0.706 -1.253 3.335 -0.018 -0.457 30.729 -2.273 -1.335 3.353 -0.862 0.033 30.732 10 EE_DG28DC29:DG20DC21_DD E 28 ? D 21 ? E 29 ? D 20 ? 1 E DC 5 1_555 D DG 2 1_555 E DC 6 1_555 D DG 1 1_555 0.848 -0.160 3.502 1.482 1.312 34.984 -0.478 -1.169 3.526 2.181 -2.462 35.038 11 EE_DC29DC30:DG19DG20_DD E 29 ? D 20 ? E 30 ? D 19 ? 1 A DG 1 1_555 A DC 6 7_556 A DG 2 1_555 A DC 5 7_556 -0.552 -0.455 3.798 0.916 1.140 34.241 -0.979 1.104 3.766 1.935 -1.555 34.272 12 AA_DG1DG2:DC5DC6_AA A 1 ? A 6 ? A 2 ? A 5 ? 1 A DG 2 1_555 A DC 5 7_556 A DC 3 1_555 A DG 4 7_556 -0.598 -0.319 3.068 -0.873 5.007 32.949 -1.334 0.908 3.003 8.762 1.528 33.328 13 AA_DG2DC3:DG4DC5_AA A 2 ? A 5 ? A 3 ? A 4 ? 1 A DC 3 1_555 A DG 4 7_556 A DG 4 1_555 A DC 3 7_556 0.000 0.142 3.479 0.000 8.823 27.348 -1.842 0.000 3.360 18.073 0.000 28.710 14 AA_DC3DG4:DC3DG4_AA A 3 ? A 4 ? A 4 ? A 3 ? 1 A DG 4 1_555 A DC 3 7_556 A DC 5 1_555 A DG 2 7_556 0.598 -0.319 3.068 0.873 5.007 32.949 -1.334 -0.908 3.003 8.762 -1.528 33.328 15 AA_DG4DC5:DG2DC3_AA A 4 ? A 3 ? A 5 ? A 2 ? 1 A DC 5 1_555 A DG 2 7_556 A DC 6 1_555 A DG 1 7_556 0.552 -0.455 3.798 -0.916 1.140 34.241 -0.979 -1.104 3.766 1.935 1.555 34.272 16 AA_DC5DC6:DG1DG2_AA A 5 ? A 2 ? A 6 ? A 1 ? # _atom_sites.entry_id 1F6C _atom_sites.fract_transf_matrix[1][1] 0.013986 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013986 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016770 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_