data_1FN2 # _entry.id 1FN2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1FN2 pdb_00001fn2 10.2210/pdb1fn2/pdb NDB DD0033 ? ? RCSB RCSB011729 ? ? WWPDB D_1000011729 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-10-30 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 22 4 'Structure model' '_pdbx_struct_conn_angle.value' 23 4 'Structure model' '_struct_conn.pdbx_dist_value' 24 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 25 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 29 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 30 4 'Structure model' '_struct_conn.ptnr1_symmetry' 31 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 32 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 33 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 34 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 35 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 36 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 37 4 'Structure model' '_struct_conn.ptnr2_symmetry' 38 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 39 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 40 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1FN2 _pdbx_database_status.recvd_initial_deposition_date 2000-08-19 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type NDB DD0032 '9-amino-(N-(2-dimethylamino)butyl)acridine-4-carboxamide bound to d(CG(5Br)UACG)2' unspecified NDB DD0023 '5-F-9-amino-(N-(2-dimethylamino)ethyl)acridine-4-carboxamide bound to d(CGTACG)2' unspecified NDB DD0015 '9-amino-(N-(2-dimethylamino)ethyl)acridine-4-carboxamide bound to d(CGTACG)2' unspecified NDB DDB074 '6-Br-9-amino-(N-(2-dimethylamino)ethyl)acridine-4-carboxamide bound to d(CG(5Br)UACG)2' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Adams, A.' 1 'Guss, J.M.' 2 'Collyer, C.A.' 3 'Denny, W.A.' 4 'Wakelin, L.P.G.' 5 # _citation.id primary _citation.title 'A novel form of intercalation involving four DNA duplexes in an acridine-4-carboxamide complex of d(CGTACG)(2).' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 28 _citation.page_first 4244 _citation.page_last 4253 _citation.year 2000 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11058124 _citation.pdbx_database_id_DOI 10.1093/nar/28.21.4244 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Adams, A.' 1 ? primary 'Guss, J.M.' 2 ? primary 'Collyer, C.A.' 3 ? primary 'Denny, W.A.' 4 ? primary 'Wakelin, L.P.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(P*GP*TP*AP*CP*G)-3') ; 1520.036 1 ? ? ? 'KNOWN TO BE A GOOD SEQUENCE FOR INTERCALATION' 2 polymer syn ;DNA (5'-D(*CP*GP*TP*AP*CP*G)-3') ; 1809.217 1 ? ? ? 'KNOWN TO BE A GOOD SEQUENCE FOR INTERCALATION' 3 non-polymer syn 'COBALT (II) ION' 58.933 2 ? ? ? ? 4 non-polymer syn '9-AMINO-(N-(2-DIMETHYLAMINO)BUTYL)ACRIDINE-4-CARBOXAMIDE' 336.431 1 ? ? ? ? 5 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 6 water nat water 18.015 31 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DG)(DT)(DA)(DC)(DG)' GTACG A ? 2 polydeoxyribonucleotide no no '(DC)(DG)(DT)(DA)(DC)(DG)' CGTACG B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'COBALT (II) ION' CO 4 '9-AMINO-(N-(2-DIMETHYLAMINO)BUTYL)ACRIDINE-4-CARBOXAMIDE' 8AD 5 'SODIUM ION' NA 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DT n 1 3 DA n 1 4 DC n 1 5 DG n 2 1 DC n 2 2 DG n 2 3 DT n 2 4 DA n 2 5 DC n 2 6 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 8AD non-polymer . '9-AMINO-(N-(2-DIMETHYLAMINO)BUTYL)ACRIDINE-4-CARBOXAMIDE' ? 'C20 H24 N4 O' 336.431 CO non-polymer . 'COBALT (II) ION' ? 'Co 2' 58.933 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1002 1002 DG G A . n A 1 2 DT 2 1003 1003 DT T A . n A 1 3 DA 3 1004 1004 DA A A . n A 1 4 DC 4 1005 1005 DC C A . n A 1 5 DG 5 1006 1006 DG G A . n B 2 1 DC 1 2001 2001 DC C B . n B 2 2 DG 2 2002 2002 DG G B . n B 2 3 DT 3 2003 2003 DT T B . n B 2 4 DA 4 2004 2004 DA A B . n B 2 5 DC 5 2005 2005 DC C B . n B 2 6 DG 6 2006 2006 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CO 1 4002 4002 CO CO A . D 4 8AD 1 3014 3014 8AD 8AD A . E 3 CO 1 4001 4001 CO CO B . F 5 NA 1 4003 4003 NA NA B . G 6 HOH 1 4007 4007 HOH HOH A . G 6 HOH 2 4008 4008 HOH HOH A . G 6 HOH 3 4014 4014 HOH HOH A . G 6 HOH 4 4017 4017 HOH HOH A . G 6 HOH 5 4021 4021 HOH HOH A . G 6 HOH 6 4022 4022 HOH HOH A . G 6 HOH 7 4023 4023 HOH HOH A . G 6 HOH 8 4025 4025 HOH HOH A . G 6 HOH 9 4026 4026 HOH HOH A . G 6 HOH 10 4027 4027 HOH HOH A . G 6 HOH 11 4028 4028 HOH HOH A . G 6 HOH 12 4032 4032 HOH HOH A . H 6 HOH 1 4004 4004 HOH HOH B . H 6 HOH 2 4005 4005 HOH HOH B . H 6 HOH 3 4006 4006 HOH HOH B . H 6 HOH 4 4009 4009 HOH HOH B . H 6 HOH 5 4010 4010 HOH HOH B . H 6 HOH 6 4011 4011 HOH HOH B . H 6 HOH 7 4012 4012 HOH HOH B . H 6 HOH 8 4013 4013 HOH HOH B . H 6 HOH 9 4015 4015 HOH HOH B . H 6 HOH 10 4016 4016 HOH HOH B . H 6 HOH 11 4018 4018 HOH HOH B . H 6 HOH 12 4019 4019 HOH HOH B . H 6 HOH 13 4020 4020 HOH HOH B . H 6 HOH 14 4024 4024 HOH HOH B . H 6 HOH 15 4029 4029 HOH HOH B . H 6 HOH 16 4030 4030 HOH HOH B . H 6 HOH 17 4031 4031 HOH HOH B . H 6 HOH 18 4033 4033 HOH HOH B . H 6 HOH 19 4034 4034 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A 8AD 3014 ? CD1 ? D 8AD 1 CD1 2 1 N 1 A 8AD 3014 ? OD1 ? D 8AD 1 OD1 3 1 N 1 A 8AD 3014 ? ND1 ? D 8AD 1 ND1 4 1 N 1 A 8AD 3014 ? ND2 ? D 8AD 1 ND2 5 1 N 1 A 8AD 3014 ? CD2 ? D 8AD 1 CD2 6 1 N 1 A 8AD 3014 ? CD3 ? D 8AD 1 CD3 7 1 N 1 A 8AD 3014 ? CD4 ? D 8AD 1 CD4 8 1 N 1 A 8AD 3014 ? CD5 ? D 8AD 1 CD5 9 1 N 1 A 8AD 3014 ? CD7 ? D 8AD 1 CD7 10 1 N 1 A 8AD 3014 ? CD8 ? D 8AD 1 CD8 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELXL-97 refinement . ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 # _cell.entry_id 1FN2 _cell.length_a 28.964 _cell.length_b 52.620 _cell.length_c 40.455 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FN2 _symmetry.space_group_name_H-M 'C 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 21 # _exptl.entry_id 1FN2 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 48.5 _exptl_crystal.density_Matthews 2.39 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 285 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details 'MPD, sodium cacodylate, magnesium acetate, cobalt(II) chloride, spermine., pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 285K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'sodium cacodylate' ? ? ? 1 2 1 'magnesium acetate' ? ? ? 1 3 1 CoCl2 ? ? ? 1 4 1 spermine ? ? ? 1 5 1 MPD ? ? ? 1 6 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 110 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS II' _diffrn_detector.pdbx_collection_date 1998-01-16 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1FN2 _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 1.60 _reflns.number_obs 4123 _reflns.number_all 4123 _reflns.percent_possible_obs 95.4 _reflns.pdbx_Rmerge_I_obs 0.0640000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 19.4 _reflns.B_iso_Wilson_estimate 21.24 _reflns.pdbx_redundancy 7.6 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.60 _reflns_shell.d_res_low 1.66 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 88.5 _reflns_shell.Rmerge_I_obs 0.2220000 _reflns_shell.meanI_over_sigI_obs 3.76 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 2.6 _reflns_shell.number_unique_all 370 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1FN2 _refine.ls_number_reflns_obs 4123 _refine.ls_number_reflns_all 4123 _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 40 _refine.ls_d_res_high 1.60 _refine.ls_percent_reflns_obs 92.8 _refine.ls_R_factor_obs 0.2510000 _refine.ls_R_factor_all 0.2510000 _refine.ls_R_factor_R_work 0.2480000 _refine.ls_R_factor_R_free 0.2970000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 8.3 _refine.ls_number_reflns_R_free 343 _refine.ls_number_parameters 1108 _refine.ls_number_restraints 2624 _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201-228' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method 'FREE R' _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Shelx 2000' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details Random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1FN2 _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 0 _refine_analyze.occupancy_sum_hydrogen 0 _refine_analyze.occupancy_sum_non_hydrogen 262.25 _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 224 _refine_hist.pdbx_number_atoms_ligand 18 _refine_hist.number_atoms_solvent 31 _refine_hist.number_atoms_total 273 _refine_hist.d_res_high 1.60 _refine_hist.d_res_low 40 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_angle_d 0.012 ? ? ? 'X-RAY DIFFRACTION' ? s_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.034 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.0109 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.004 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.005 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.068 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.000 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 1FN2 _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff ? _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff 0.2380000 _pdbx_refine.R_factor_obs_4sig_cutoff 0.2360000 _pdbx_refine.free_R_factor_4sig_cutoff 0.2830000 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 8.7 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 299 _pdbx_refine.number_reflns_obs_4sig_cutoff 3451 _pdbx_refine.number_reflns_obs_no_cutoff ? _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _database_PDB_matrix.entry_id 1FN2 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _struct.entry_id 1FN2 _struct.title '9-AMINO-(N-(2-DIMETHYLAMINO)BUTYL)ACRIDINE-4-CARBOXAMIDE BOUND TO D(CGTACG)2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1FN2 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DNA, acridine-4-carboxamide, intercalation, quadruplex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 3 ? F N N 5 ? G N N 6 ? H N N 6 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 1FN2 1FN2 ? ? ? 2 2 PDB 1FN2 1FN2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1FN2 A 1 ? 5 ? 1FN2 1002 ? 1006 ? 1002 1006 2 2 1FN2 B 1 ? 6 ? 1FN2 2001 ? 2006 ? 2001 2006 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 1 N7 ? ? ? 1_555 C CO . CO ? ? A DG 1002 A CO 4002 1_555 ? ? ? ? ? ? ? 2.145 ? ? metalc2 metalc ? ? C CO . CO ? ? ? 1_555 G HOH . O ? ? A CO 4002 A HOH 4022 1_555 ? ? ? ? ? ? ? 2.332 ? ? metalc3 metalc ? ? C CO . CO ? ? ? 1_555 G HOH . O ? ? A CO 4002 A HOH 4023 1_555 ? ? ? ? ? ? ? 2.393 ? ? metalc4 metalc ? ? C CO . CO ? ? ? 1_555 G HOH . O ? ? A CO 4002 A HOH 4026 1_555 ? ? ? ? ? ? ? 2.087 ? ? metalc5 metalc ? ? C CO . CO ? ? ? 1_555 G HOH . O ? ? A CO 4002 A HOH 4027 1_555 ? ? ? ? ? ? ? 2.050 ? ? metalc6 metalc ? ? C CO . CO ? ? ? 1_555 G HOH . O ? ? A CO 4002 A HOH 4028 1_555 ? ? ? ? ? ? ? 2.531 ? ? metalc7 metalc ? ? B DG 2 OP2 ? ? ? 1_555 F NA . NA ? ? B DG 2002 B NA 4003 1_555 ? ? ? ? ? ? ? 2.516 ? ? metalc8 metalc ? ? B DG 2 OP2 ? ? ? 3_655 F NA . NA ? ? B DG 2002 B NA 4003 1_555 ? ? ? ? ? ? ? 2.516 ? ? metalc9 metalc ? ? B DG 2 OP2 ? ? ? 4_565 F NA . NA ? ? B DG 2002 B NA 4003 1_555 ? ? ? ? ? ? ? 2.516 ? ? metalc10 metalc ? ? B DG 2 OP2 ? ? ? 2_665 F NA . NA ? ? B DG 2002 B NA 4003 1_555 ? ? ? ? ? ? ? 2.516 ? ? metalc11 metalc ? ? B DG 6 N7 ? ? ? 1_555 E CO . CO ? ? B DG 2006 B CO 4001 1_555 ? ? ? ? ? ? ? 2.118 ? ? metalc12 metalc ? ? B DG 6 N7 ? ? ? 3_756 E CO . CO ? ? B DG 2006 B CO 4001 1_555 ? ? ? ? ? ? ? 2.117 ? ? metalc13 metalc ? ? E CO . CO ? ? ? 1_555 H HOH . O ? ? B CO 4001 B HOH 4013 1_555 ? ? ? ? ? ? ? 1.956 ? ? metalc14 metalc ? ? E CO . CO ? ? ? 1_555 H HOH . O ? ? B CO 4001 B HOH 4013 3_756 ? ? ? ? ? ? ? 1.956 ? ? metalc15 metalc ? ? E CO . CO ? ? ? 1_555 H HOH . O ? ? B CO 4001 B HOH 4020 1_555 ? ? ? ? ? ? ? 2.167 ? ? metalc16 metalc ? ? E CO . CO ? ? ? 1_555 H HOH . O ? ? B CO 4001 B HOH 4020 3_756 ? ? ? ? ? ? ? 2.167 ? ? metalc17 metalc ? ? F NA . NA ? ? ? 1_555 H HOH . O ? ? B NA 4003 B HOH 4029 1_555 ? ? ? ? ? ? ? 2.197 ? ? metalc18 metalc ? ? F NA . NA ? ? ? 1_555 H HOH . O ? ? B NA 4003 B HOH 4029 3_655 ? ? ? ? ? ? ? 2.197 ? ? metalc19 metalc ? ? F NA . NA ? ? ? 1_555 H HOH . O ? ? B NA 4003 B HOH 4029 4_565 ? ? ? ? ? ? ? 2.197 ? ? metalc20 metalc ? ? F NA . NA ? ? ? 1_555 H HOH . O ? ? B NA 4003 B HOH 4029 2_665 ? ? ? ? ? ? ? 2.197 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 1002 B DC 2005 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 1002 B DC 2005 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 1002 B DC 2005 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 1003 B DA 2004 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 1003 B DA 2004 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 3 N3 ? ? A DA 1004 B DT 2003 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 3 O4 ? ? A DA 1004 B DT 2003 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 1005 B DG 2002 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 1005 B DG 2002 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 1005 B DG 2002 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A DG 1 ? A DG 1002 ? 1_555 CO ? C CO . ? A CO 4002 ? 1_555 O ? G HOH . ? A HOH 4022 ? 1_555 84.1 ? 2 N7 ? A DG 1 ? A DG 1002 ? 1_555 CO ? C CO . ? A CO 4002 ? 1_555 O ? G HOH . ? A HOH 4023 ? 1_555 84.7 ? 3 O ? G HOH . ? A HOH 4022 ? 1_555 CO ? C CO . ? A CO 4002 ? 1_555 O ? G HOH . ? A HOH 4023 ? 1_555 81.4 ? 4 N7 ? A DG 1 ? A DG 1002 ? 1_555 CO ? C CO . ? A CO 4002 ? 1_555 O ? G HOH . ? A HOH 4026 ? 1_555 90.5 ? 5 O ? G HOH . ? A HOH 4022 ? 1_555 CO ? C CO . ? A CO 4002 ? 1_555 O ? G HOH . ? A HOH 4026 ? 1_555 93.0 ? 6 O ? G HOH . ? A HOH 4023 ? 1_555 CO ? C CO . ? A CO 4002 ? 1_555 O ? G HOH . ? A HOH 4026 ? 1_555 172.9 ? 7 N7 ? A DG 1 ? A DG 1002 ? 1_555 CO ? C CO . ? A CO 4002 ? 1_555 O ? G HOH . ? A HOH 4027 ? 1_555 159.8 ? 8 O ? G HOH . ? A HOH 4022 ? 1_555 CO ? C CO . ? A CO 4002 ? 1_555 O ? G HOH . ? A HOH 4027 ? 1_555 107.9 ? 9 O ? G HOH . ? A HOH 4023 ? 1_555 CO ? C CO . ? A CO 4002 ? 1_555 O ? G HOH . ? A HOH 4027 ? 1_555 81.3 ? 10 O ? G HOH . ? A HOH 4026 ? 1_555 CO ? C CO . ? A CO 4002 ? 1_555 O ? G HOH . ? A HOH 4027 ? 1_555 104.7 ? 11 N7 ? A DG 1 ? A DG 1002 ? 1_555 CO ? C CO . ? A CO 4002 ? 1_555 O ? G HOH . ? A HOH 4028 ? 1_555 91.1 ? 12 O ? G HOH . ? A HOH 4022 ? 1_555 CO ? C CO . ? A CO 4002 ? 1_555 O ? G HOH . ? A HOH 4028 ? 1_555 174.4 ? 13 O ? G HOH . ? A HOH 4023 ? 1_555 CO ? C CO . ? A CO 4002 ? 1_555 O ? G HOH . ? A HOH 4028 ? 1_555 101.0 ? 14 O ? G HOH . ? A HOH 4026 ? 1_555 CO ? C CO . ? A CO 4002 ? 1_555 O ? G HOH . ? A HOH 4028 ? 1_555 84.3 ? 15 O ? G HOH . ? A HOH 4027 ? 1_555 CO ? C CO . ? A CO 4002 ? 1_555 O ? G HOH . ? A HOH 4028 ? 1_555 77.5 ? 16 OP2 ? B DG 2 ? B DG 2002 ? 1_555 NA ? F NA . ? B NA 4003 ? 1_555 OP2 ? B DG 2 ? B DG 2002 ? 3_655 102.0 ? 17 OP2 ? B DG 2 ? B DG 2002 ? 1_555 NA ? F NA . ? B NA 4003 ? 1_555 OP2 ? B DG 2 ? B DG 2002 ? 4_565 78.1 ? 18 OP2 ? B DG 2 ? B DG 2002 ? 3_655 NA ? F NA . ? B NA 4003 ? 1_555 OP2 ? B DG 2 ? B DG 2002 ? 4_565 175.9 ? 19 OP2 ? B DG 2 ? B DG 2002 ? 1_555 NA ? F NA . ? B NA 4003 ? 1_555 OP2 ? B DG 2 ? B DG 2002 ? 2_665 175.9 ? 20 OP2 ? B DG 2 ? B DG 2002 ? 3_655 NA ? F NA . ? B NA 4003 ? 1_555 OP2 ? B DG 2 ? B DG 2002 ? 2_665 78.1 ? 21 OP2 ? B DG 2 ? B DG 2002 ? 4_565 NA ? F NA . ? B NA 4003 ? 1_555 OP2 ? B DG 2 ? B DG 2002 ? 2_665 102.0 ? 22 OP2 ? B DG 2 ? B DG 2002 ? 1_555 NA ? F NA . ? B NA 4003 ? 1_555 O ? H HOH . ? B HOH 4029 ? 1_555 70.4 ? 23 OP2 ? B DG 2 ? B DG 2002 ? 3_655 NA ? F NA . ? B NA 4003 ? 1_555 O ? H HOH . ? B HOH 4029 ? 1_555 103.0 ? 24 OP2 ? B DG 2 ? B DG 2002 ? 4_565 NA ? F NA . ? B NA 4003 ? 1_555 O ? H HOH . ? B HOH 4029 ? 1_555 80.9 ? 25 OP2 ? B DG 2 ? B DG 2002 ? 2_665 NA ? F NA . ? B NA 4003 ? 1_555 O ? H HOH . ? B HOH 4029 ? 1_555 105.6 ? 26 OP2 ? B DG 2 ? B DG 2002 ? 1_555 NA ? F NA . ? B NA 4003 ? 1_555 O ? H HOH . ? B HOH 4029 ? 3_655 103.0 ? 27 OP2 ? B DG 2 ? B DG 2002 ? 3_655 NA ? F NA . ? B NA 4003 ? 1_555 O ? H HOH . ? B HOH 4029 ? 3_655 70.4 ? 28 OP2 ? B DG 2 ? B DG 2002 ? 4_565 NA ? F NA . ? B NA 4003 ? 1_555 O ? H HOH . ? B HOH 4029 ? 3_655 105.6 ? 29 OP2 ? B DG 2 ? B DG 2002 ? 2_665 NA ? F NA . ? B NA 4003 ? 1_555 O ? H HOH . ? B HOH 4029 ? 3_655 80.9 ? 30 O ? H HOH . ? B HOH 4029 ? 1_555 NA ? F NA . ? B NA 4003 ? 1_555 O ? H HOH . ? B HOH 4029 ? 3_655 169.9 ? 31 OP2 ? B DG 2 ? B DG 2002 ? 1_555 NA ? F NA . ? B NA 4003 ? 1_555 O ? H HOH . ? B HOH 4029 ? 4_565 80.9 ? 32 OP2 ? B DG 2 ? B DG 2002 ? 3_655 NA ? F NA . ? B NA 4003 ? 1_555 O ? H HOH . ? B HOH 4029 ? 4_565 105.6 ? 33 OP2 ? B DG 2 ? B DG 2002 ? 4_565 NA ? F NA . ? B NA 4003 ? 1_555 O ? H HOH . ? B HOH 4029 ? 4_565 70.4 ? 34 OP2 ? B DG 2 ? B DG 2002 ? 2_665 NA ? F NA . ? B NA 4003 ? 1_555 O ? H HOH . ? B HOH 4029 ? 4_565 103.0 ? 35 O ? H HOH . ? B HOH 4029 ? 1_555 NA ? F NA . ? B NA 4003 ? 1_555 O ? H HOH . ? B HOH 4029 ? 4_565 142.9 ? 36 O ? H HOH . ? B HOH 4029 ? 3_655 NA ? F NA . ? B NA 4003 ? 1_555 O ? H HOH . ? B HOH 4029 ? 4_565 38.5 ? 37 OP2 ? B DG 2 ? B DG 2002 ? 1_555 NA ? F NA . ? B NA 4003 ? 1_555 O ? H HOH . ? B HOH 4029 ? 2_665 105.6 ? 38 OP2 ? B DG 2 ? B DG 2002 ? 3_655 NA ? F NA . ? B NA 4003 ? 1_555 O ? H HOH . ? B HOH 4029 ? 2_665 80.9 ? 39 OP2 ? B DG 2 ? B DG 2002 ? 4_565 NA ? F NA . ? B NA 4003 ? 1_555 O ? H HOH . ? B HOH 4029 ? 2_665 103.0 ? 40 OP2 ? B DG 2 ? B DG 2002 ? 2_665 NA ? F NA . ? B NA 4003 ? 1_555 O ? H HOH . ? B HOH 4029 ? 2_665 70.4 ? 41 O ? H HOH . ? B HOH 4029 ? 1_555 NA ? F NA . ? B NA 4003 ? 1_555 O ? H HOH . ? B HOH 4029 ? 2_665 38.5 ? 42 O ? H HOH . ? B HOH 4029 ? 3_655 NA ? F NA . ? B NA 4003 ? 1_555 O ? H HOH . ? B HOH 4029 ? 2_665 142.9 ? 43 O ? H HOH . ? B HOH 4029 ? 4_565 NA ? F NA . ? B NA 4003 ? 1_555 O ? H HOH . ? B HOH 4029 ? 2_665 169.9 ? 44 N7 ? B DG 6 ? B DG 2006 ? 1_555 CO ? E CO . ? B CO 4001 ? 1_555 N7 ? B DG 6 ? B DG 2006 ? 3_756 174.7 ? 45 N7 ? B DG 6 ? B DG 2006 ? 1_555 CO ? E CO . ? B CO 4001 ? 1_555 O ? H HOH . ? B HOH 4013 ? 1_555 90.3 ? 46 N7 ? B DG 6 ? B DG 2006 ? 3_756 CO ? E CO . ? B CO 4001 ? 1_555 O ? H HOH . ? B HOH 4013 ? 1_555 86.7 ? 47 N7 ? B DG 6 ? B DG 2006 ? 1_555 CO ? E CO . ? B CO 4001 ? 1_555 O ? H HOH . ? B HOH 4013 ? 3_756 86.7 ? 48 N7 ? B DG 6 ? B DG 2006 ? 3_756 CO ? E CO . ? B CO 4001 ? 1_555 O ? H HOH . ? B HOH 4013 ? 3_756 90.3 ? 49 O ? H HOH . ? B HOH 4013 ? 1_555 CO ? E CO . ? B CO 4001 ? 1_555 O ? H HOH . ? B HOH 4013 ? 3_756 111.4 ? 50 N7 ? B DG 6 ? B DG 2006 ? 1_555 CO ? E CO . ? B CO 4001 ? 1_555 O ? H HOH . ? B HOH 4020 ? 1_555 92.3 ? 51 N7 ? B DG 6 ? B DG 2006 ? 3_756 CO ? E CO . ? B CO 4001 ? 1_555 O ? H HOH . ? B HOH 4020 ? 1_555 92.1 ? 52 O ? H HOH . ? B HOH 4013 ? 1_555 CO ? E CO . ? B CO 4001 ? 1_555 O ? H HOH . ? B HOH 4020 ? 1_555 158.6 ? 53 O ? H HOH . ? B HOH 4013 ? 3_756 CO ? E CO . ? B CO 4001 ? 1_555 O ? H HOH . ? B HOH 4020 ? 1_555 90.0 ? 54 N7 ? B DG 6 ? B DG 2006 ? 1_555 CO ? E CO . ? B CO 4001 ? 1_555 O ? H HOH . ? B HOH 4020 ? 3_756 92.1 ? 55 N7 ? B DG 6 ? B DG 2006 ? 3_756 CO ? E CO . ? B CO 4001 ? 1_555 O ? H HOH . ? B HOH 4020 ? 3_756 92.3 ? 56 O ? H HOH . ? B HOH 4013 ? 1_555 CO ? E CO . ? B CO 4001 ? 1_555 O ? H HOH . ? B HOH 4020 ? 3_756 90.0 ? 57 O ? H HOH . ? B HOH 4013 ? 3_756 CO ? E CO . ? B CO 4001 ? 1_555 O ? H HOH . ? B HOH 4020 ? 3_756 158.6 ? 58 O ? H HOH . ? B HOH 4020 ? 1_555 CO ? E CO . ? B CO 4001 ? 1_555 O ? H HOH . ? B HOH 4020 ? 3_756 68.7 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B CO 4001 ? 6 'BINDING SITE FOR RESIDUE CO B 4001' AC2 Software A CO 4002 ? 6 'BINDING SITE FOR RESIDUE CO A 4002' AC3 Software B NA 4003 ? 8 'BINDING SITE FOR RESIDUE NA B 4003' AC4 Software A 8AD 3014 ? 4 'BINDING SITE FOR RESIDUE 8AD A 3014' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 DG B 6 ? DG B 2006 . ? 1_555 ? 2 AC1 6 DG B 6 ? DG B 2006 . ? 3_756 ? 3 AC1 6 HOH H . ? HOH B 4013 . ? 1_555 ? 4 AC1 6 HOH H . ? HOH B 4013 . ? 3_756 ? 5 AC1 6 HOH H . ? HOH B 4020 . ? 3_756 ? 6 AC1 6 HOH H . ? HOH B 4020 . ? 1_555 ? 7 AC2 6 DG A 1 ? DG A 1002 . ? 1_555 ? 8 AC2 6 HOH G . ? HOH A 4022 . ? 1_555 ? 9 AC2 6 HOH G . ? HOH A 4023 . ? 1_555 ? 10 AC2 6 HOH G . ? HOH A 4026 . ? 1_555 ? 11 AC2 6 HOH G . ? HOH A 4027 . ? 1_555 ? 12 AC2 6 HOH G . ? HOH A 4028 . ? 1_555 ? 13 AC3 8 DG B 2 ? DG B 2002 . ? 2_665 ? 14 AC3 8 DG B 2 ? DG B 2002 . ? 3_655 ? 15 AC3 8 DG B 2 ? DG B 2002 . ? 1_555 ? 16 AC3 8 DG B 2 ? DG B 2002 . ? 4_565 ? 17 AC3 8 HOH H . ? HOH B 4029 . ? 4_565 ? 18 AC3 8 HOH H . ? HOH B 4029 . ? 1_555 ? 19 AC3 8 HOH H . ? HOH B 4029 . ? 2_665 ? 20 AC3 8 HOH H . ? HOH B 4029 . ? 3_655 ? 21 AC4 4 DC A 4 ? DC A 1005 . ? 1_555 ? 22 AC4 4 DG A 5 ? DG A 1006 . ? 1_555 ? 23 AC4 4 DC B 1 ? DC B 2001 . ? 3_655 ? 24 AC4 4 DG B 2 ? DG B 2002 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C4'" A DG 1002 ? ? "C3'" A DG 1002 ? ? 1.624 1.529 0.095 0.010 N 2 1 "C4'" A DT 1003 ? ? "C3'" A DT 1003 ? ? 1.625 1.529 0.096 0.010 N 3 1 "O4'" A DT 1003 ? ? "C1'" A DT 1003 ? ? 1.486 1.420 0.066 0.011 N 4 1 "C4'" A DA 1004 ? ? "C3'" A DA 1004 ? ? 1.619 1.529 0.090 0.010 N 5 1 "C4'" A DC 1005 ? ? "C3'" A DC 1005 ? ? 1.621 1.529 0.092 0.010 N 6 1 "C4'" A DG 1006 ? ? "C3'" A DG 1006 ? ? 1.630 1.529 0.101 0.010 N 7 1 "C4'" B DC 2001 ? ? "C3'" B DC 2001 ? ? 1.619 1.529 0.090 0.010 N 8 1 "C4'" B DG 2002 ? ? "C3'" B DG 2002 ? ? 1.627 1.529 0.098 0.010 N 9 1 "C4'" B DT 2003 ? ? "C3'" B DT 2003 ? ? 1.622 1.529 0.093 0.010 N 10 1 "C4'" B DA 2004 ? ? "C3'" B DA 2004 ? ? 1.612 1.529 0.083 0.010 N 11 1 "O3'" B DA 2004 ? ? P B DC 2005 ? ? 1.685 1.607 0.078 0.012 Y 12 1 "C4'" B DC 2005 ? ? "C3'" B DC 2005 ? ? 1.619 1.529 0.090 0.010 N 13 1 "C4'" B DG 2006 ? ? "C3'" B DG 2006 ? ? 1.618 1.529 0.089 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 P A DG 1002 ? ? "O5'" A DG 1002 ? ? "C5'" A DG 1002 ? ? 109.84 120.90 -11.06 1.60 N 2 1 "O4'" A DG 1002 ? ? "C4'" A DG 1002 ? ? "C3'" A DG 1002 ? ? 99.11 104.50 -5.39 0.40 N 3 1 "C3'" A DG 1002 ? ? "O3'" A DG 1002 ? ? P A DT 1003 ? ? 110.07 119.70 -9.63 1.20 Y 4 1 "O4'" A DT 1003 ? ? "C4'" A DT 1003 ? ? "C3'" A DT 1003 ? ? 100.33 104.50 -4.17 0.40 N 5 1 "C4'" A DT 1003 ? ? "C3'" A DT 1003 ? ? "C2'" A DT 1003 ? ? 109.68 103.10 6.58 0.90 N 6 1 "O4'" A DT 1003 ? ? "C1'" A DT 1003 ? ? N1 A DT 1003 ? ? 102.87 108.00 -5.13 0.70 N 7 1 "O5'" A DA 1004 ? ? P A DA 1004 ? ? OP2 A DA 1004 ? ? 99.44 105.70 -6.26 0.90 N 8 1 "O5'" A DA 1004 ? ? "C5'" A DA 1004 ? ? "C4'" A DA 1004 ? ? 101.59 109.40 -7.81 0.80 N 9 1 P A DC 1005 ? ? "O5'" A DC 1005 ? ? "C5'" A DC 1005 ? ? 110.17 120.90 -10.73 1.60 N 10 1 "O4'" A DC 1005 ? ? "C4'" A DC 1005 ? ? "C3'" A DC 1005 ? ? 101.68 104.50 -2.82 0.40 N 11 1 "C4'" A DC 1005 ? ? "C3'" A DC 1005 ? ? "C2'" A DC 1005 ? ? 108.90 103.10 5.80 0.90 N 12 1 "C3'" A DC 1005 ? ? "O3'" A DC 1005 ? ? P A DG 1006 ? ? 111.55 119.70 -8.15 1.20 Y 13 1 "O4'" A DG 1006 ? ? "C4'" A DG 1006 ? ? "C3'" A DG 1006 ? ? 99.95 104.50 -4.55 0.40 N 14 1 "O4'" B DC 2001 ? ? "C4'" B DC 2001 ? ? "C3'" B DC 2001 ? ? 101.82 104.50 -2.68 0.40 N 15 1 "O4'" B DC 2001 ? ? "C1'" B DC 2001 ? ? N1 B DC 2001 ? ? 101.77 108.00 -6.23 0.70 N 16 1 "O5'" B DG 2002 ? ? "C5'" B DG 2002 ? ? "C4'" B DG 2002 ? ? 104.03 109.40 -5.37 0.80 N 17 1 P B DG 2002 ? ? "O5'" B DG 2002 ? ? "C5'" B DG 2002 ? ? 97.82 120.90 -23.08 1.60 N 18 1 "O4'" B DG 2002 ? ? "C4'" B DG 2002 ? ? "C3'" B DG 2002 ? ? 100.97 104.50 -3.53 0.40 N 19 1 "O5'" B DT 2003 ? ? "C5'" B DT 2003 ? ? "C4'" B DT 2003 ? ? 104.54 109.40 -4.86 0.80 N 20 1 "O4'" B DT 2003 ? ? "C4'" B DT 2003 ? ? "C3'" B DT 2003 ? ? 101.81 104.50 -2.69 0.40 N 21 1 P B DA 2004 ? ? "O5'" B DA 2004 ? ? "C5'" B DA 2004 ? ? 110.56 120.90 -10.34 1.60 N 22 1 "O4'" B DA 2004 ? ? "C4'" B DA 2004 ? ? "C3'" B DA 2004 ? ? 101.94 104.50 -2.56 0.40 N 23 1 "O4'" B DC 2005 ? ? "C4'" B DC 2005 ? ? "C3'" B DC 2005 ? ? 101.27 104.50 -3.23 0.40 N 24 1 "O4'" B DG 2006 ? ? "C4'" B DG 2006 ? ? "C3'" B DG 2006 ? ? 101.83 104.50 -2.67 0.40 N # _struct_site_keywords.site_id 1 _struct_site_keywords.text INTERCALATION # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 B CO 4001 ? E CO . 2 1 B NA 4003 ? F NA . 3 1 A HOH 4017 ? G HOH . 4 1 B HOH 4005 ? H HOH . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 8AD C1 C Y N 1 8AD C2 C Y N 2 8AD C3 C Y N 3 8AD C4 C Y N 4 8AD C5 C Y N 5 8AD C6 C Y N 6 8AD C7 C Y N 7 8AD C8 C Y N 8 8AD C9 C Y N 9 8AD N10 N Y N 10 8AD C11 C Y N 11 8AD C12 C Y N 12 8AD C13 C Y N 13 8AD C14 C Y N 14 8AD N9 N N N 15 8AD CD1 C N N 16 8AD OD1 O N N 17 8AD ND1 N N N 18 8AD ND2 N N N 19 8AD CD2 C N N 20 8AD CD3 C N N 21 8AD CD4 C N N 22 8AD CD5 C N N 23 8AD CD7 C N N 24 8AD CD8 C N N 25 8AD H1 H N N 26 8AD H2 H N N 27 8AD H3 H N N 28 8AD H5 H N N 29 8AD H6 H N N 30 8AD H7 H N N 31 8AD H8 H N N 32 8AD H9A H N N 33 8AD H9B H N N 34 8AD HD1 H N N 35 8AD HD21 H N N 36 8AD HD22 H N N 37 8AD HD31 H N N 38 8AD HD32 H N N 39 8AD HD41 H N N 40 8AD HD42 H N N 41 8AD HD51 H N N 42 8AD HD52 H N N 43 8AD HD71 H N N 44 8AD HD72 H N N 45 8AD HD73 H N N 46 8AD HD81 H N N 47 8AD HD82 H N N 48 8AD HD83 H N N 49 CO CO CO N N 50 DA OP3 O N N 51 DA P P N N 52 DA OP1 O N N 53 DA OP2 O N N 54 DA "O5'" O N N 55 DA "C5'" C N N 56 DA "C4'" C N R 57 DA "O4'" O N N 58 DA "C3'" C N S 59 DA "O3'" O N N 60 DA "C2'" C N N 61 DA "C1'" C N R 62 DA N9 N Y N 63 DA C8 C Y N 64 DA N7 N Y N 65 DA C5 C Y N 66 DA C6 C Y N 67 DA N6 N N N 68 DA N1 N Y N 69 DA C2 C Y N 70 DA N3 N Y N 71 DA C4 C Y N 72 DA HOP3 H N N 73 DA HOP2 H N N 74 DA "H5'" H N N 75 DA "H5''" H N N 76 DA "H4'" H N N 77 DA "H3'" H N N 78 DA "HO3'" H N N 79 DA "H2'" H N N 80 DA "H2''" H N N 81 DA "H1'" H N N 82 DA H8 H N N 83 DA H61 H N N 84 DA H62 H N N 85 DA H2 H N N 86 DC OP3 O N N 87 DC P P N N 88 DC OP1 O N N 89 DC OP2 O N N 90 DC "O5'" O N N 91 DC "C5'" C N N 92 DC "C4'" C N R 93 DC "O4'" O N N 94 DC "C3'" C N S 95 DC "O3'" O N N 96 DC "C2'" C N N 97 DC "C1'" C N R 98 DC N1 N N N 99 DC C2 C N N 100 DC O2 O N N 101 DC N3 N N N 102 DC C4 C N N 103 DC N4 N N N 104 DC C5 C N N 105 DC C6 C N N 106 DC HOP3 H N N 107 DC HOP2 H N N 108 DC "H5'" H N N 109 DC "H5''" H N N 110 DC "H4'" H N N 111 DC "H3'" H N N 112 DC "HO3'" H N N 113 DC "H2'" H N N 114 DC "H2''" H N N 115 DC "H1'" H N N 116 DC H41 H N N 117 DC H42 H N N 118 DC H5 H N N 119 DC H6 H N N 120 DG OP3 O N N 121 DG P P N N 122 DG OP1 O N N 123 DG OP2 O N N 124 DG "O5'" O N N 125 DG "C5'" C N N 126 DG "C4'" C N R 127 DG "O4'" O N N 128 DG "C3'" C N S 129 DG "O3'" O N N 130 DG "C2'" C N N 131 DG "C1'" C N R 132 DG N9 N Y N 133 DG C8 C Y N 134 DG N7 N Y N 135 DG C5 C Y N 136 DG C6 C N N 137 DG O6 O N N 138 DG N1 N N N 139 DG C2 C N N 140 DG N2 N N N 141 DG N3 N N N 142 DG C4 C Y N 143 DG HOP3 H N N 144 DG HOP2 H N N 145 DG "H5'" H N N 146 DG "H5''" H N N 147 DG "H4'" H N N 148 DG "H3'" H N N 149 DG "HO3'" H N N 150 DG "H2'" H N N 151 DG "H2''" H N N 152 DG "H1'" H N N 153 DG H8 H N N 154 DG H1 H N N 155 DG H21 H N N 156 DG H22 H N N 157 DT OP3 O N N 158 DT P P N N 159 DT OP1 O N N 160 DT OP2 O N N 161 DT "O5'" O N N 162 DT "C5'" C N N 163 DT "C4'" C N R 164 DT "O4'" O N N 165 DT "C3'" C N S 166 DT "O3'" O N N 167 DT "C2'" C N N 168 DT "C1'" C N R 169 DT N1 N N N 170 DT C2 C N N 171 DT O2 O N N 172 DT N3 N N N 173 DT C4 C N N 174 DT O4 O N N 175 DT C5 C N N 176 DT C7 C N N 177 DT C6 C N N 178 DT HOP3 H N N 179 DT HOP2 H N N 180 DT "H5'" H N N 181 DT "H5''" H N N 182 DT "H4'" H N N 183 DT "H3'" H N N 184 DT "HO3'" H N N 185 DT "H2'" H N N 186 DT "H2''" H N N 187 DT "H1'" H N N 188 DT H3 H N N 189 DT H71 H N N 190 DT H72 H N N 191 DT H73 H N N 192 DT H6 H N N 193 HOH O O N N 194 HOH H1 H N N 195 HOH H2 H N N 196 NA NA NA N N 197 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8AD C1 C2 doub Y N 1 8AD C1 C11 sing Y N 2 8AD C1 H1 sing N N 3 8AD C2 C3 sing Y N 4 8AD C2 H2 sing N N 5 8AD C3 C4 doub Y N 6 8AD C3 H3 sing N N 7 8AD C4 C12 sing Y N 8 8AD C4 CD1 sing N N 9 8AD C5 C6 doub Y N 10 8AD C5 C14 sing Y N 11 8AD C5 H5 sing N N 12 8AD C6 C7 sing Y N 13 8AD C6 H6 sing N N 14 8AD C7 C8 doub Y N 15 8AD C7 H7 sing N N 16 8AD C8 C13 sing Y N 17 8AD C8 H8 sing N N 18 8AD C9 C11 doub Y N 19 8AD C9 C13 sing Y N 20 8AD C9 N9 sing N N 21 8AD N10 C12 doub Y N 22 8AD N10 C14 sing Y N 23 8AD C11 C12 sing Y N 24 8AD C13 C14 doub Y N 25 8AD N9 H9A sing N N 26 8AD N9 H9B sing N N 27 8AD CD1 OD1 doub N N 28 8AD CD1 ND1 sing N N 29 8AD ND1 CD2 sing N N 30 8AD ND1 HD1 sing N N 31 8AD ND2 CD5 sing N N 32 8AD ND2 CD7 sing N N 33 8AD ND2 CD8 sing N N 34 8AD CD2 CD3 sing N N 35 8AD CD2 HD21 sing N N 36 8AD CD2 HD22 sing N N 37 8AD CD3 CD4 sing N N 38 8AD CD3 HD31 sing N N 39 8AD CD3 HD32 sing N N 40 8AD CD4 CD5 sing N N 41 8AD CD4 HD41 sing N N 42 8AD CD4 HD42 sing N N 43 8AD CD5 HD51 sing N N 44 8AD CD5 HD52 sing N N 45 8AD CD7 HD71 sing N N 46 8AD CD7 HD72 sing N N 47 8AD CD7 HD73 sing N N 48 8AD CD8 HD81 sing N N 49 8AD CD8 HD82 sing N N 50 8AD CD8 HD83 sing N N 51 DA OP3 P sing N N 52 DA OP3 HOP3 sing N N 53 DA P OP1 doub N N 54 DA P OP2 sing N N 55 DA P "O5'" sing N N 56 DA OP2 HOP2 sing N N 57 DA "O5'" "C5'" sing N N 58 DA "C5'" "C4'" sing N N 59 DA "C5'" "H5'" sing N N 60 DA "C5'" "H5''" sing N N 61 DA "C4'" "O4'" sing N N 62 DA "C4'" "C3'" sing N N 63 DA "C4'" "H4'" sing N N 64 DA "O4'" "C1'" sing N N 65 DA "C3'" "O3'" sing N N 66 DA "C3'" "C2'" sing N N 67 DA "C3'" "H3'" sing N N 68 DA "O3'" "HO3'" sing N N 69 DA "C2'" "C1'" sing N N 70 DA "C2'" "H2'" sing N N 71 DA "C2'" "H2''" sing N N 72 DA "C1'" N9 sing N N 73 DA "C1'" "H1'" sing N N 74 DA N9 C8 sing Y N 75 DA N9 C4 sing Y N 76 DA C8 N7 doub Y N 77 DA C8 H8 sing N N 78 DA N7 C5 sing Y N 79 DA C5 C6 sing Y N 80 DA C5 C4 doub Y N 81 DA C6 N6 sing N N 82 DA C6 N1 doub Y N 83 DA N6 H61 sing N N 84 DA N6 H62 sing N N 85 DA N1 C2 sing Y N 86 DA C2 N3 doub Y N 87 DA C2 H2 sing N N 88 DA N3 C4 sing Y N 89 DC OP3 P sing N N 90 DC OP3 HOP3 sing N N 91 DC P OP1 doub N N 92 DC P OP2 sing N N 93 DC P "O5'" sing N N 94 DC OP2 HOP2 sing N N 95 DC "O5'" "C5'" sing N N 96 DC "C5'" "C4'" sing N N 97 DC "C5'" "H5'" sing N N 98 DC "C5'" "H5''" sing N N 99 DC "C4'" "O4'" sing N N 100 DC "C4'" "C3'" sing N N 101 DC "C4'" "H4'" sing N N 102 DC "O4'" "C1'" sing N N 103 DC "C3'" "O3'" sing N N 104 DC "C3'" "C2'" sing N N 105 DC "C3'" "H3'" sing N N 106 DC "O3'" "HO3'" sing N N 107 DC "C2'" "C1'" sing N N 108 DC "C2'" "H2'" sing N N 109 DC "C2'" "H2''" sing N N 110 DC "C1'" N1 sing N N 111 DC "C1'" "H1'" sing N N 112 DC N1 C2 sing N N 113 DC N1 C6 sing N N 114 DC C2 O2 doub N N 115 DC C2 N3 sing N N 116 DC N3 C4 doub N N 117 DC C4 N4 sing N N 118 DC C4 C5 sing N N 119 DC N4 H41 sing N N 120 DC N4 H42 sing N N 121 DC C5 C6 doub N N 122 DC C5 H5 sing N N 123 DC C6 H6 sing N N 124 DG OP3 P sing N N 125 DG OP3 HOP3 sing N N 126 DG P OP1 doub N N 127 DG P OP2 sing N N 128 DG P "O5'" sing N N 129 DG OP2 HOP2 sing N N 130 DG "O5'" "C5'" sing N N 131 DG "C5'" "C4'" sing N N 132 DG "C5'" "H5'" sing N N 133 DG "C5'" "H5''" sing N N 134 DG "C4'" "O4'" sing N N 135 DG "C4'" "C3'" sing N N 136 DG "C4'" "H4'" sing N N 137 DG "O4'" "C1'" sing N N 138 DG "C3'" "O3'" sing N N 139 DG "C3'" "C2'" sing N N 140 DG "C3'" "H3'" sing N N 141 DG "O3'" "HO3'" sing N N 142 DG "C2'" "C1'" sing N N 143 DG "C2'" "H2'" sing N N 144 DG "C2'" "H2''" sing N N 145 DG "C1'" N9 sing N N 146 DG "C1'" "H1'" sing N N 147 DG N9 C8 sing Y N 148 DG N9 C4 sing Y N 149 DG C8 N7 doub Y N 150 DG C8 H8 sing N N 151 DG N7 C5 sing Y N 152 DG C5 C6 sing N N 153 DG C5 C4 doub Y N 154 DG C6 O6 doub N N 155 DG C6 N1 sing N N 156 DG N1 C2 sing N N 157 DG N1 H1 sing N N 158 DG C2 N2 sing N N 159 DG C2 N3 doub N N 160 DG N2 H21 sing N N 161 DG N2 H22 sing N N 162 DG N3 C4 sing N N 163 DT OP3 P sing N N 164 DT OP3 HOP3 sing N N 165 DT P OP1 doub N N 166 DT P OP2 sing N N 167 DT P "O5'" sing N N 168 DT OP2 HOP2 sing N N 169 DT "O5'" "C5'" sing N N 170 DT "C5'" "C4'" sing N N 171 DT "C5'" "H5'" sing N N 172 DT "C5'" "H5''" sing N N 173 DT "C4'" "O4'" sing N N 174 DT "C4'" "C3'" sing N N 175 DT "C4'" "H4'" sing N N 176 DT "O4'" "C1'" sing N N 177 DT "C3'" "O3'" sing N N 178 DT "C3'" "C2'" sing N N 179 DT "C3'" "H3'" sing N N 180 DT "O3'" "HO3'" sing N N 181 DT "C2'" "C1'" sing N N 182 DT "C2'" "H2'" sing N N 183 DT "C2'" "H2''" sing N N 184 DT "C1'" N1 sing N N 185 DT "C1'" "H1'" sing N N 186 DT N1 C2 sing N N 187 DT N1 C6 sing N N 188 DT C2 O2 doub N N 189 DT C2 N3 sing N N 190 DT N3 C4 sing N N 191 DT N3 H3 sing N N 192 DT C4 O4 doub N N 193 DT C4 C5 sing N N 194 DT C5 C7 sing N N 195 DT C5 C6 doub N N 196 DT C7 H71 sing N N 197 DT C7 H72 sing N N 198 DT C7 H73 sing N N 199 DT C6 H6 sing N N 200 HOH O H1 sing N N 201 HOH O H2 sing N N 202 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1FN2 'double helix' 1FN2 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 5 1_555 -0.343 -0.130 -0.150 -12.136 3.802 -0.151 1 A_DG1002:DC2005_B A 1002 ? B 2005 ? 19 1 1 A DT 2 1_555 B DA 4 1_555 0.133 -0.172 0.084 2.557 -1.150 -0.369 2 A_DT1003:DA2004_B A 1003 ? B 2004 ? 20 1 1 A DA 3 1_555 B DT 3 1_555 -0.196 0.002 -0.286 -6.717 3.684 -7.286 3 A_DA1004:DT2003_B A 1004 ? B 2003 ? 20 1 1 A DC 4 1_555 B DG 2 1_555 0.555 -0.037 -0.233 16.171 1.105 4.787 4 A_DC1005:DG2002_B A 1005 ? B 2002 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 5 1_555 A DT 2 1_555 B DA 4 1_555 -0.193 -0.357 3.028 -1.825 3.188 27.388 -1.462 -0.004 2.974 6.694 3.833 27.628 1 AA_DG1002DT1003:DA2004DC2005_BB A 1002 ? B 2005 ? A 1003 ? B 2004 ? 1 A DT 2 1_555 B DA 4 1_555 A DA 3 1_555 B DT 3 1_555 -0.131 -0.542 3.379 1.750 6.624 35.294 -1.841 0.467 3.218 10.799 -2.853 35.932 2 AA_DT1003DA1004:DT2003DA2004_BB A 1003 ? B 2004 ? A 1004 ? B 2003 ? 1 A DA 3 1_555 B DT 3 1_555 A DC 4 1_555 B DG 2 1_555 0.873 -0.361 2.868 -3.284 2.305 31.140 -1.039 -2.144 2.730 4.271 6.085 31.391 3 AA_DA1004DC1005:DG2002DT2003_BB A 1004 ? B 2003 ? A 1005 ? B 2002 ? # _atom_sites.entry_id 1FN2 _atom_sites.fract_transf_matrix[1][1] 0.034526 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019004 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.024719 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CO N NA O P # loop_