data_1GZL # _entry.id 1GZL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.318 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1GZL PDBE EBI-9877 WWPDB D_1290009877 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1DGC unspecified 'GCN4 LEUCINE ZIPPER COMPLEXED WITH SPECIFIC ATF/CREB SITE DEOXYRIBONUCLEIC ACID' PDB 1E7T unspecified 'HUMAN VIMENTIN COIL 2B FRAGMENT LINKED TO GCN4 LEUCINE ZIPPER' PDB 1ENV unspecified 'ATOMIC STRUCTURE OF THE ECTODOMAIN FROM HIV-1 GP41' PDB 1FAV unspecified 'THE STRUCTURE OF AN HIV-1 SPECIFIC CELL ENTRY INHIBITOR INCOMPLEX WITH THE HIV-1 GP41 TRIMERIC CORE' PDB 1GCL unspecified 'GCN4 LEUCINE ZIPPER CORE MUTANT P-LI' PDB 1GCM unspecified 'GCN4 LEUCINE ZIPPER CORE MUTANT P-LI' PDB 1GK6 unspecified 'HUMAN VIMENTIN COIL 2B FRAGMENT LINKED TO GCN4 LEUCINE ZIPPER (Z2B)' PDB 1IHQ unspecified 'GLYTM1BZIP: A CHIMERIC PEPTIDE MODEL OF THE N-TERMINUS OF ARAT SHORT ALPHA TROPOMYOSIN WITH THE N-TERMINUS ENCODED BYEXON 1B' PDB 1IJ0 unspecified 'COILED COIL TRIMER GCN4-PVLS SER AT BURIED D POSITION' PDB 1IJ1 unspecified 'GCN4-PVLT COILED-COIL TRIMER WITH THREONINE AT THE D(12)POSITION' PDB 1IJ2 unspecified 'GCN4-PVTL COILED-COIL TRIMER WITH THREONINE AT THE A(16)POSITION' PDB 1IJ3 unspecified 'GCN4-PVSL COILED-COIL TRIMER WITH SERINE AT THE A(16)POSITION' PDB 1KQL unspecified 'CRYSTAL STRUCTURE OF THE C-TERMINAL REGION OF STRIATEDMUSCLE ALPHA-TROPOMYOSIN AT 2.7 ANGSTROM RESOLUTION' PDB 1PIQ unspecified 'CRYSTAL STRUCTURE OF GCN4-PIQ, A TRIMERIC COILED COIL WITH BURIED POLAR RESIDUES' PDB 1SWI unspecified 'GCN4-LEUCINE ZIPPER CORE MUTANT AS N16A COMPLEXED WITH BENZENE' PDB 1TMZ unspecified 'TMZIP: A CHIMERIC PEPTIDE MODEL OF THE N- TERMINUS OF ALPHA TROPOMYOSIN, NMR, 15 STRUCTURES' PDB 1YSA unspecified 'GCN4 (BASIC REGION, LEUCINE ZIPPER) COMPLEX WITH AP-1 DEOXYRIBONUCLEIC ACID' PDB 1ZII unspecified 'GCN4-LEUCINE ZIPPER CORE MUTANT ASN16ABA IN THE DIMERIC STATE' PDB 1ZIJ unspecified 'GCN4-LEUCINE ZIPPER CORE MUTANT ASN16ABA IN THE TRIMERIC STATE' PDB 1ZIK unspecified 'GCN4-LEUCINE ZIPPER CORE MUTANT ASN16LYS IN THE DIMERIC STATE' PDB 1ZIL unspecified 'GCN4-LEUCINE ZIPPER CORE MUTANT ASN16GLN IN THE DIMERIC STATE' PDB 1ZIM unspecified 'GCN4-LEUCINE ZIPPER CORE MUTANT ASN16GLN IN THE TRIMERIC STATE' PDB 1ZTA unspecified 'LEUCINE ZIPPER MONOMER (NMR, 20 STRUCTURES)' PDB 2DGC unspecified 'GCN4 BASIC DOMAIN, LEUCINE ZIPPER COMPLEXED WITH ATF/CREB SITE DEOXYRIBONUCLEIC ACID' PDB 2ZTA unspecified 'GCN4 LEUCINE ZIPPER' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1GZL _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2002-05-23 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sia, S.K.' 1 'Carr, P.A.' 2 'Cochran, A.G.' 3 'Malashkevich, V.M.' 4 'Kim, P.S.' 5 # _citation.id primary _citation.title 'Short Constrained Peptides that Inhibit HIV-1 Entry' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 99 _citation.page_first 14664 _citation.page_last ? _citation.year 2002 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12417739 _citation.pdbx_database_id_DOI 10.1073/PNAS.232566599 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sia, S.K.' 1 ? primary 'Carr, P.A.' 2 ? primary 'Cochran, A.G.' 3 ? primary 'Malashkevich, V.M.' 4 ? primary 'Kim, P.S.' 5 ? # _cell.entry_id 1GZL _cell.length_a 38.358 _cell.length_b 38.358 _cell.length_c 169.695 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GZL _symmetry.space_group_name_H-M 'P 63' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'FUSION PROTEIN BETWEEN THE HYDROPHOBIC POCKET OF HIV GP41 AND GENERAL CONTROL PROTEIN GCN4-PIQI' 5468.566 2 ? ? 'GP41 HYDROPHOBIC POCKET, RESIDUES 565-581, GCN4, RESIDUES 249-276' ? 2 polymer syn 'ENVELOPE GLYCOPROTEIN GP41' 1670.710 2 ? YES 'RESIDUES 628-639' ;SEQUENCE OF THE HIV-1 GP41 WAS MUTATED AT MET 629 AND ASN 636 TO GLUTAMATE, AND THEIR SIDE-CHAINS CROSS-LINKED VIA A DIAMINOPENTANE GROUP ; 3 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ? 4 non-polymer syn PENTANE-1,5-DIAMINE 102.178 2 ? ? ? ? 5 water nat water 18.015 77 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name C14LINKMID # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes '(ACE)RMKQIEDKIEEIESKQKKIENEIARIKKLLQLTVWGIKQLQARIL' XRMKQIEDKIEEIESKQKKIENEIARIKKLLQLTVWGIKQLQARIL A,B ? 2 'polypeptide(L)' no no WEEWDREIENYT WEEWDREIENYT C,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 ARG n 1 3 MET n 1 4 LYS n 1 5 GLN n 1 6 ILE n 1 7 GLU n 1 8 ASP n 1 9 LYS n 1 10 ILE n 1 11 GLU n 1 12 GLU n 1 13 ILE n 1 14 GLU n 1 15 SER n 1 16 LYS n 1 17 GLN n 1 18 LYS n 1 19 LYS n 1 20 ILE n 1 21 GLU n 1 22 ASN n 1 23 GLU n 1 24 ILE n 1 25 ALA n 1 26 ARG n 1 27 ILE n 1 28 LYS n 1 29 LYS n 1 30 LEU n 1 31 LEU n 1 32 GLN n 1 33 LEU n 1 34 THR n 1 35 VAL n 1 36 TRP n 1 37 GLY n 1 38 ILE n 1 39 LYS n 1 40 GLN n 1 41 LEU n 1 42 GLN n 1 43 ALA n 1 44 ARG n 1 45 ILE n 1 46 LEU n 2 1 TRP n 2 2 GLU n 2 3 GLU n 2 4 TRP n 2 5 ASP n 2 6 ARG n 2 7 GLU n 2 8 ILE n 2 9 GLU n 2 10 ASN n 2 11 TYR n 2 12 THR n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? 'SACCHAROMYCES CEREVISIAE' ;BAKER'S YEAST ; 4932 'THIS PEPTIDE WAS CHEMICALLY SYNTHESIZED' 1 2 sample ? ? 'HUMAN IMMUNODEFICIENCY VIRUS 1' HIV-1 11676 'THIS PEPTIDE WAS CHEMICALLY SYNTHESIZED' 2 1 sample ? ? 'HUMAN IMMUNODEFICIENCY VIRUS' HIV-1 12721 'THIS PEPTIDE WAS CHEMICALLY SYNTHESIZED' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 1GZL 1 ? ? 1GZL ? 2 UNP GCN4_YEAST 1 ? ? P03069 ? 3 UNP ENV_HV1H2 1 ? ? P04578 ? 4 UNP ENV_HV1H2 2 ? ? P04578 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1GZL A 1 ? 1 ? 1GZL 0 ? 0 ? 0 0 2 2 1GZL A 2 ? 29 ? P03069 249 ? 276 ? 1 28 3 3 1GZL A 30 ? 46 ? P04578 565 ? 581 ? 29 45 4 1 1GZL B 1 ? 1 ? 1GZL 0 ? 0 ? 0 0 5 2 1GZL B 2 ? 29 ? P03069 249 ? 276 ? 1 28 6 3 1GZL B 30 ? 46 ? P04578 565 ? 581 ? 29 45 7 4 1GZL C 1 ? 12 ? P04578 628 ? 639 ? 628 639 8 4 1GZL D 1 ? 12 ? P04578 628 ? 639 ? 628 639 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1GZL ILE A 6 ? UNP P03069 LEU 253 conflict 5 1 1 1GZL ILE A 10 ? UNP P03069 VAL 257 conflict 9 2 1 1GZL ILE A 13 ? UNP P03069 LEU 260 conflict 12 3 1 1GZL GLU A 14 ? UNP P03069 LEU 261 conflict 13 4 1 1GZL GLN A 17 ? UNP P03069 ASN 264 conflict 16 5 1 1GZL LYS A 18 ? UNP P03069 TYR 265 conflict 17 6 1 1GZL LYS A 19 ? UNP P03069 HIS 266 conflict 18 7 1 1GZL ILE A 20 ? UNP P03069 LEU 267 conflict 19 8 1 1GZL ILE A 24 ? UNP P03069 VAL 271 conflict 23 9 1 1GZL ILE A 27 ? UNP P03069 LEU 274 conflict 26 10 4 1GZL ILE B 6 ? UNP P03069 LEU 253 conflict 5 11 4 1GZL ILE B 10 ? UNP P03069 VAL 257 conflict 9 12 4 1GZL ILE B 13 ? UNP P03069 LEU 260 conflict 12 13 4 1GZL GLU B 14 ? UNP P03069 LEU 261 conflict 13 14 4 1GZL GLN B 17 ? UNP P03069 ASN 264 conflict 16 15 4 1GZL LYS B 18 ? UNP P03069 TYR 265 conflict 17 16 4 1GZL LYS B 19 ? UNP P03069 HIS 266 conflict 18 17 4 1GZL ILE B 20 ? UNP P03069 LEU 267 conflict 19 18 4 1GZL ILE B 24 ? UNP P03069 VAL 271 conflict 23 19 4 1GZL ILE B 27 ? UNP P03069 LEU 274 conflict 26 20 7 1GZL GLU C 2 ? UNP P04578 MET 629 'engineered mutation' 629 21 7 1GZL GLU C 9 ? UNP P04578 ASN 636 'engineered mutation' 636 22 8 1GZL GLU D 2 ? UNP P04578 MET 629 'engineered mutation' 629 23 8 1GZL GLU D 9 ? UNP P04578 ASN 636 'engineered mutation' 636 24 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 N2P non-polymer . PENTANE-1,5-DIAMINE ? 'C5 H14 N2' 102.178 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1GZL _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.46 _exptl_crystal.density_percent_sol 49.6 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.60 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '16% ISOPROPANOL, 0.1 M TRIS, PH 8.6, 1 M (NH4)2SO4' # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2000-06-19 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00930 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X4A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X4A _diffrn_source.pdbx_wavelength 1.00930 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1GZL _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.000 _reflns.d_resolution_high 1.800 _reflns.number_obs 59821 _reflns.number_all ? _reflns.percent_possible_obs 91.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.04400 _reflns.pdbx_netI_over_sigmaI 13.6000 _reflns.B_iso_Wilson_estimate 26.9 _reflns.pdbx_redundancy 5.000 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.86 _reflns_shell.percent_possible_all 69.5 _reflns_shell.Rmerge_I_obs 0.18700 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 7.200 _reflns_shell.pdbx_redundancy 2.10 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1GZL _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 10672 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 505253.07 _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.58 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 81.7 _refine.ls_R_factor_obs 0.208 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.208 _refine.ls_R_factor_R_free 0.243 _refine.ls_R_factor_R_free_error 0.009 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 6.4 _refine.ls_number_reflns_R_free 685 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 36.0 _refine.aniso_B[1][1] 0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[3][3] 0.00 _refine.aniso_B[1][2] 0.01 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.428224 _refine.solvent_model_param_bsol 97.565 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;FINAL REFINEMENT IS AFTER DETWINNING DATA. 529 REFLECTIONS WERE REJECTED BY CNS AFTER MEROHEDRAL DETWINNING. THE THREE CHAINS OF THE TRIMER ARE RELATED BY CRYSTALLOGRAPHIC SYMMETRY. TO GENERATE THE TRIMER, APPLY SYMMETRY TRANSFORMATIONS. THE FINAL MODEL CONSISTS OF ALL RESIDUES EXCEPT FOR THE TWO N-TERMINAL RESIDUES OF C14LINKMID, WHICH ARE DISORDERED. ; _refine.pdbx_starting_model 'UNBOUND IQN17 AND A MODEL OF C14LINKMID BOUND TO THE HYDROPHOBIC POCKET' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 1GZL _refine_analyze.Luzzati_coordinate_error_obs 0.23 _refine_analyze.Luzzati_sigma_a_obs 0.24 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.29 _refine_analyze.Luzzati_sigma_a_free 0.19 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1002 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 16 _refine_hist.number_atoms_solvent 77 _refine_hist.number_atoms_total 1095 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 19.58 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.0 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 15.9 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.67 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.40 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.30 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.13 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 3.30 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.80 _refine_ls_shell.d_res_low 1.91 _refine_ls_shell.number_reflns_R_work 1143 _refine_ls_shell.R_factor_R_work 0.296 _refine_ls_shell.percent_reflns_obs 55.9 _refine_ls_shell.R_factor_R_free 0.296 _refine_ls_shell.R_factor_R_free_error 0.034 _refine_ls_shell.percent_reflns_R_free 6.2 _refine_ls_shell.number_reflns_R_free 76 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 PROTEIN_REP_D.PARAM PROTEIN_GN.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM ? 'X-RAY DIFFRACTION' 3 ION.PARAM ? # _struct.entry_id 1GZL _struct.title 'Crystal structure of C14linkmid/IQN17: a cross-linked inhibitor of HIV-1 entry bound to the gp41 hydrophobic pocket' _struct.pdbx_descriptor 'FUSION PROTEIN BETWEEN THE HYDROPHOBIC POCKET OF HIV GP41 AND GENERAL CONTROL PROTEIN GCN4-PIQI, ENVELOPE GLYCOPROTEIN GP41' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1GZL _struct_keywords.pdbx_keywords GLYCOPROTEIN _struct_keywords.text 'GLYCOPROTEIN, HIV ENTRY, INHIBITOR, CROSS-LINK, GP41, COILED COIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? I N N 5 ? J N N 5 ? K N N 5 ? L N N 5 ? # _struct_biol.id 1 _struct_biol.details ;AND CHAINS B AND D). APPLYING CRYSTAL SYMMETRY GENERATES TWO TRIMERS OF HETERODIMERS (HEXAMERS). ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 2 ? ILE A 45 ? ARG A 1 ILE A 44 1 ? 44 HELX_P HELX_P2 2 ARG B 2 ? LEU B 46 ? ARG B 1 LEU B 45 1 ? 45 HELX_P HELX_P3 3 TRP C 1 ? THR C 12 ? TRP C 628 THR C 639 1 ? 12 HELX_P HELX_P4 4 TRP D 1 ? THR D 12 ? TRP D 628 THR D 639 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A ACE 1 C ? ? ? 1_555 A ARG 2 N ? ? A ACE 0 A ARG 1 1_555 ? ? ? ? ? ? ? 1.335 ? covale2 covale both ? B ACE 1 C ? ? ? 1_555 B ARG 2 N ? ? B ACE 0 B ARG 1 1_555 ? ? ? ? ? ? ? 1.333 ? covale3 covale none ? C GLU 2 CD ? ? ? 1_555 G N2P . N1 ? ? C GLU 629 C N2P 1640 1_555 ? ? ? ? ? ? ? 1.334 ? covale4 covale none ? C GLU 9 CD ? ? ? 1_555 G N2P . NE2 ? ? C GLU 636 C N2P 1640 1_555 ? ? ? ? ? ? ? 1.329 ? covale5 covale none ? D GLU 2 CD ? ? ? 1_555 H N2P . N1 ? ? D GLU 629 D N2P 1640 1_555 ? ? ? ? ? ? ? 1.345 ? covale6 covale none ? D GLU 9 CD ? ? ? 1_555 H N2P . NE2 ? ? D GLU 636 D N2P 1640 1_555 ? ? ? ? ? ? ? 1.338 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE CL A 1046' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE CL B 1046' AC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE N2P C 1640' AC4 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE N2P D 1640' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 GLN A 17 ? GLN A 16 . ? 2_765 ? 2 AC1 3 GLN A 17 ? GLN A 16 . ? 3_675 ? 3 AC1 3 GLN A 17 ? GLN A 16 . ? 1_555 ? 4 AC2 3 ILE B 20 ? ILE B 19 . ? 3_665 ? 5 AC2 3 ILE B 20 ? ILE B 19 . ? 1_555 ? 6 AC2 3 ILE B 20 ? ILE B 19 . ? 2_655 ? 7 AC3 4 GLU C 2 ? GLU C 629 . ? 1_555 ? 8 AC3 4 ASP C 5 ? ASP C 632 . ? 1_555 ? 9 AC3 4 ARG C 6 ? ARG C 633 . ? 1_555 ? 10 AC3 4 GLU C 9 ? GLU C 636 . ? 1_555 ? 11 AC4 4 GLU D 2 ? GLU D 629 . ? 1_555 ? 12 AC4 4 ASP D 5 ? ASP D 632 . ? 1_555 ? 13 AC4 4 ARG D 6 ? ARG D 633 . ? 1_555 ? 14 AC4 4 GLU D 9 ? GLU D 636 . ? 1_555 ? # _database_PDB_matrix.entry_id 1GZL _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1GZL _atom_sites.fract_transf_matrix[1][1] 0.026070 _atom_sites.fract_transf_matrix[1][2] 0.015052 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.030103 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005893 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 0 0 ACE ACE A . n A 1 2 ARG 2 1 1 ARG ARG A . n A 1 3 MET 3 2 2 MET MET A . n A 1 4 LYS 4 3 3 LYS LYS A . n A 1 5 GLN 5 4 4 GLN GLN A . n A 1 6 ILE 6 5 5 ILE ILE A . n A 1 7 GLU 7 6 6 GLU GLU A . n A 1 8 ASP 8 7 7 ASP ASP A . n A 1 9 LYS 9 8 8 LYS LYS A . n A 1 10 ILE 10 9 9 ILE ILE A . n A 1 11 GLU 11 10 10 GLU GLU A . n A 1 12 GLU 12 11 11 GLU GLU A . n A 1 13 ILE 13 12 12 ILE ILE A . n A 1 14 GLU 14 13 13 GLU GLU A . n A 1 15 SER 15 14 14 SER SER A . n A 1 16 LYS 16 15 15 LYS LYS A . n A 1 17 GLN 17 16 16 GLN GLN A . n A 1 18 LYS 18 17 17 LYS LYS A . n A 1 19 LYS 19 18 18 LYS LYS A . n A 1 20 ILE 20 19 19 ILE ILE A . n A 1 21 GLU 21 20 20 GLU GLU A . n A 1 22 ASN 22 21 21 ASN ASN A . n A 1 23 GLU 23 22 22 GLU GLU A . n A 1 24 ILE 24 23 23 ILE ILE A . n A 1 25 ALA 25 24 24 ALA ALA A . n A 1 26 ARG 26 25 25 ARG ARG A . n A 1 27 ILE 27 26 26 ILE ILE A . n A 1 28 LYS 28 27 27 LYS LYS A . n A 1 29 LYS 29 28 28 LYS LYS A . n A 1 30 LEU 30 29 29 LEU LEU A . n A 1 31 LEU 31 30 30 LEU LEU A . n A 1 32 GLN 32 31 31 GLN GLN A . n A 1 33 LEU 33 32 32 LEU LEU A . n A 1 34 THR 34 33 33 THR THR A . n A 1 35 VAL 35 34 34 VAL VAL A . n A 1 36 TRP 36 35 35 TRP TRP A . n A 1 37 GLY 37 36 36 GLY GLY A . n A 1 38 ILE 38 37 37 ILE ILE A . n A 1 39 LYS 39 38 38 LYS LYS A . n A 1 40 GLN 40 39 39 GLN GLN A . n A 1 41 LEU 41 40 40 LEU LEU A . n A 1 42 GLN 42 41 41 GLN GLN A . n A 1 43 ALA 43 42 42 ALA ALA A . n A 1 44 ARG 44 43 43 ARG ARG A . n A 1 45 ILE 45 44 44 ILE ILE A . n A 1 46 LEU 46 45 45 LEU LEU A . n B 1 1 ACE 1 0 0 ACE ACE B . n B 1 2 ARG 2 1 1 ARG ARG B . n B 1 3 MET 3 2 2 MET MET B . n B 1 4 LYS 4 3 3 LYS LYS B . n B 1 5 GLN 5 4 4 GLN GLN B . n B 1 6 ILE 6 5 5 ILE ILE B . n B 1 7 GLU 7 6 6 GLU GLU B . n B 1 8 ASP 8 7 7 ASP ASP B . n B 1 9 LYS 9 8 8 LYS LYS B . n B 1 10 ILE 10 9 9 ILE ILE B . n B 1 11 GLU 11 10 10 GLU GLU B . n B 1 12 GLU 12 11 11 GLU GLU B . n B 1 13 ILE 13 12 12 ILE ILE B . n B 1 14 GLU 14 13 13 GLU GLU B . n B 1 15 SER 15 14 14 SER SER B . n B 1 16 LYS 16 15 15 LYS LYS B . n B 1 17 GLN 17 16 16 GLN GLN B . n B 1 18 LYS 18 17 17 LYS LYS B . n B 1 19 LYS 19 18 18 LYS LYS B . n B 1 20 ILE 20 19 19 ILE ILE B . n B 1 21 GLU 21 20 20 GLU GLU B . n B 1 22 ASN 22 21 21 ASN ASN B . n B 1 23 GLU 23 22 22 GLU GLU B . n B 1 24 ILE 24 23 23 ILE ILE B . n B 1 25 ALA 25 24 24 ALA ALA B . n B 1 26 ARG 26 25 25 ARG ARG B . n B 1 27 ILE 27 26 26 ILE ILE B . n B 1 28 LYS 28 27 27 LYS LYS B . n B 1 29 LYS 29 28 28 LYS LYS B . n B 1 30 LEU 30 29 29 LEU LEU B . n B 1 31 LEU 31 30 30 LEU LEU B . n B 1 32 GLN 32 31 31 GLN GLN B . n B 1 33 LEU 33 32 32 LEU LEU B . n B 1 34 THR 34 33 33 THR THR B . n B 1 35 VAL 35 34 34 VAL VAL B . n B 1 36 TRP 36 35 35 TRP TRP B . n B 1 37 GLY 37 36 36 GLY GLY B . n B 1 38 ILE 38 37 37 ILE ILE B . n B 1 39 LYS 39 38 38 LYS LYS B . n B 1 40 GLN 40 39 39 GLN GLN B . n B 1 41 LEU 41 40 40 LEU LEU B . n B 1 42 GLN 42 41 41 GLN GLN B . n B 1 43 ALA 43 42 42 ALA ALA B . n B 1 44 ARG 44 43 43 ARG ARG B . n B 1 45 ILE 45 44 44 ILE ILE B . n B 1 46 LEU 46 45 45 LEU LEU B . n C 2 1 TRP 1 628 628 TRP TRP C . n C 2 2 GLU 2 629 629 GLU GLU C . n C 2 3 GLU 3 630 630 GLU GLU C . n C 2 4 TRP 4 631 631 TRP TRP C . n C 2 5 ASP 5 632 632 ASP ASP C . n C 2 6 ARG 6 633 633 ARG ARG C . n C 2 7 GLU 7 634 634 GLU GLU C . n C 2 8 ILE 8 635 635 ILE ILE C . n C 2 9 GLU 9 636 636 GLU GLU C . n C 2 10 ASN 10 637 637 ASN ASN C . n C 2 11 TYR 11 638 638 TYR TYR C . n C 2 12 THR 12 639 639 THR THR C . n D 2 1 TRP 1 628 628 TRP TRP D . n D 2 2 GLU 2 629 629 GLU GLU D . n D 2 3 GLU 3 630 630 GLU GLU D . n D 2 4 TRP 4 631 631 TRP TRP D . n D 2 5 ASP 5 632 632 ASP ASP D . n D 2 6 ARG 6 633 633 ARG ARG D . n D 2 7 GLU 7 634 634 GLU GLU D . n D 2 8 ILE 8 635 635 ILE ILE D . n D 2 9 GLU 9 636 636 GLU GLU D . n D 2 10 ASN 10 637 637 ASN ASN D . n D 2 11 TYR 11 638 638 TYR TYR D . n D 2 12 THR 12 639 639 THR THR D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CL 1 1046 1046 CL CL A . F 3 CL 1 1046 1046 CL CL B . G 4 N2P 1 1640 1640 N2P N2P C . H 4 N2P 1 1640 1640 N2P N2P D . I 5 HOH 1 2001 2001 HOH HOH A . I 5 HOH 2 2002 2002 HOH HOH A . I 5 HOH 3 2003 2003 HOH HOH A . I 5 HOH 4 2004 2004 HOH HOH A . I 5 HOH 5 2005 2005 HOH HOH A . I 5 HOH 6 2006 2006 HOH HOH A . I 5 HOH 7 2007 2007 HOH HOH A . I 5 HOH 8 2008 2008 HOH HOH A . I 5 HOH 9 2009 2009 HOH HOH A . I 5 HOH 10 2010 2010 HOH HOH A . I 5 HOH 11 2011 2011 HOH HOH A . I 5 HOH 12 2012 2012 HOH HOH A . I 5 HOH 13 2013 2013 HOH HOH A . I 5 HOH 14 2014 2014 HOH HOH A . I 5 HOH 15 2015 2015 HOH HOH A . I 5 HOH 16 2016 2016 HOH HOH A . I 5 HOH 17 2017 2017 HOH HOH A . I 5 HOH 18 2018 2018 HOH HOH A . I 5 HOH 19 2019 2019 HOH HOH A . I 5 HOH 20 2020 2020 HOH HOH A . I 5 HOH 21 2021 2021 HOH HOH A . I 5 HOH 22 2022 2022 HOH HOH A . I 5 HOH 23 2023 2023 HOH HOH A . I 5 HOH 24 2024 2024 HOH HOH A . I 5 HOH 25 2025 2025 HOH HOH A . I 5 HOH 26 2026 2026 HOH HOH A . I 5 HOH 27 2027 2027 HOH HOH A . I 5 HOH 28 2028 2028 HOH HOH A . I 5 HOH 29 2029 2029 HOH HOH A . I 5 HOH 30 2030 2030 HOH HOH A . J 5 HOH 1 2001 2001 HOH HOH B . J 5 HOH 2 2002 2002 HOH HOH B . J 5 HOH 3 2003 2003 HOH HOH B . J 5 HOH 4 2004 2004 HOH HOH B . J 5 HOH 5 2005 2005 HOH HOH B . J 5 HOH 6 2006 2006 HOH HOH B . J 5 HOH 7 2007 2007 HOH HOH B . J 5 HOH 8 2008 2008 HOH HOH B . J 5 HOH 9 2009 2009 HOH HOH B . J 5 HOH 10 2010 2010 HOH HOH B . J 5 HOH 11 2011 2011 HOH HOH B . J 5 HOH 12 2012 2012 HOH HOH B . J 5 HOH 13 2013 2013 HOH HOH B . J 5 HOH 14 2014 2014 HOH HOH B . J 5 HOH 15 2015 2015 HOH HOH B . J 5 HOH 16 2016 2016 HOH HOH B . J 5 HOH 17 2017 2017 HOH HOH B . J 5 HOH 18 2018 2018 HOH HOH B . J 5 HOH 19 2019 2019 HOH HOH B . J 5 HOH 20 2020 2020 HOH HOH B . J 5 HOH 21 2021 2021 HOH HOH B . J 5 HOH 22 2022 2022 HOH HOH B . J 5 HOH 23 2023 2023 HOH HOH B . J 5 HOH 24 2024 2024 HOH HOH B . J 5 HOH 25 2025 2025 HOH HOH B . J 5 HOH 26 2026 2026 HOH HOH B . J 5 HOH 27 2027 2027 HOH HOH B . J 5 HOH 28 2028 2028 HOH HOH B . J 5 HOH 29 2029 2029 HOH HOH B . J 5 HOH 30 2030 2030 HOH HOH B . J 5 HOH 31 2031 2031 HOH HOH B . J 5 HOH 32 2032 2032 HOH HOH B . K 5 HOH 1 2001 2001 HOH HOH C . K 5 HOH 2 2002 2002 HOH HOH C . K 5 HOH 3 2003 2003 HOH HOH C . K 5 HOH 4 2004 2004 HOH HOH C . K 5 HOH 5 2005 2005 HOH HOH C . K 5 HOH 6 2006 2006 HOH HOH C . K 5 HOH 7 2007 2007 HOH HOH C . L 5 HOH 1 2001 2001 HOH HOH D . L 5 HOH 2 2002 2002 HOH HOH D . L 5 HOH 3 2003 2003 HOH HOH D . L 5 HOH 4 2004 2004 HOH HOH D . L 5 HOH 5 2005 2005 HOH HOH D . L 5 HOH 6 2006 2006 HOH HOH D . L 5 HOH 7 2007 2007 HOH HOH D . L 5 HOH 8 2008 2008 HOH HOH D . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA hexameric 6 2 author_and_software_defined_assembly PISA hexameric 6 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2,3 A,C,E,G,I,K 2 1,4,5 B,D,F,H,J,L # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 9780 ? 1 MORE -84.2 ? 1 'SSA (A^2)' 10500 ? 2 'ABSA (A^2)' 9990 ? 2 MORE -81.4 ? 2 'SSA (A^2)' 9840 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_675 -x+y+1,-x+2,z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 66.4380048767 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 2_765 -y+2,x-y+1,z -0.5000000000 -0.8660254038 0.0000000000 57.5370000000 0.8660254038 -0.5000000000 0.0000000000 33.2190024384 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5000000000 0.8660254038 0.0000000000 19.1790000000 -0.8660254038 -0.5000000000 0.0000000000 33.2190024384 0.0000000000 0.0000000000 1.0000000000 0.0000000000 5 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5000000000 -0.8660254038 0.0000000000 38.3580000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A CL 1046 ? E CL . 2 1 B CL 1046 ? F CL . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-10-10 2 'Structure model' 1 1 2015-12-02 3 'Structure model' 1 2 2019-11-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Derived calculations' 2 2 'Structure model' 'Non-polymer description' 3 2 'Structure model' Other 4 2 'Structure model' 'Refinement description' 5 2 'Structure model' 'Source and taxonomy' 6 2 'Structure model' 'Version format compliance' 7 3 'Structure model' 'Derived calculations' 8 3 'Structure model' Other 9 3 'Structure model' 'Source and taxonomy' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_database_status 2 3 'Structure model' pdbx_entity_src_syn 3 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_pdbx_database_status.status_code_sf' 2 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.0 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 AMoRE phasing . ? 4 # _pdbx_entry_details.entry_id 1GZL _pdbx_entry_details.compound_details ;ENGINEERED MUTATION MET 629 GLU CHAINS C AND D ENGINEERED MUTATION ASN 636 GLU CHAINS C AND D ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;IN CHAINS C AND D, MET 629 AND ASN 636 ARE MUTATED TO GLUTAMIC ACID. A DIAMINOPENTANE GROUP LINKS GLU 629 AND GLU 636 ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ILE A 44 ? ? -78.50 -90.23 2 1 ILE B 44 ? ? -35.34 -80.19 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'CHLORIDE ION' CL 4 PENTANE-1,5-DIAMINE N2P 5 water HOH #