data_1H5P # _entry.id 1H5P # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1H5P PDBE EBI-6126 WWPDB D_1290006126 BMRB 5558 # _pdbx_database_related.db_id 5558 _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1H5P _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2001-05-24 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Bottomley, M.J.' 1 ? 'Liu, Z.' 2 ? 'Collard, M.W.' 3 ? 'Huggenvik, J.I.' 4 ? 'Gibson, T.J.' 5 ? 'Sattler, M.' 6 ? # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'The SAND domain structure defines a novel DNA-binding fold in transcriptional regulation.' 'Nat. Struct. Biol.' 8 626 633 2001 NSBIEW US 1072-8368 2024 ? 11427895 10.1038/89675 1 ;Nuclear Deaf-1-Related (Nudr) Protein Contains a Novel DNA Binding Domain and Represses Transcription of the Heterogeneous Nuclear Ribonucleoprotein A2/B1 Promoter ; J.Biol.Chem. 274 30510 ? 1999 JBCHA3 US 0021-9258 0071 ? 10521432 10.1074/JBC.274.43.30510 2 'The Apeced Polyglandular Autoimmune Syndrome Protein, Aire-1, Contains the Sand Domain and is Probably a Transcription Factor' 'Trends Biochem.Sci.' 23 242 ? 1998 TBSCDB NE 0968-0004 0946 ? 9697411 '10.1016/S0968-0004(98)01231-6' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Bottomley, M.J.' 1 primary 'Collard, M.W.' 2 primary 'Huggenvik, J.I.' 3 primary 'Liu, Z.' 4 primary 'Gibson, T.J.' 5 primary 'Sattler, M.' 6 1 'Michelson, R.J.' 7 1 'Collard, M.W.' 8 1 'Ziemba, A.J.' 9 1 'Persinger, J.' 10 1 'Bartholomew, B.' 11 1 'Huggenvik, J.I.' 12 2 'Gibson, T.J.' 13 2 'Ramu, C.' 14 2 'Gemuend, C.' 15 2 'Aasland, R.' 16 # _cell.entry_id 1H5P _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1H5P _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'NUCLEAR AUTOANTIGEN SP100-B' _entity.formula_weight 11052.805 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'RESIDUES 595-688' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'SAND DOMAIN, KDWK DOMAIN, SPECKLED 100 KDA, NUCLEAR DOT-ASSOCIATED SP100 PROTEIN, LYSP100B' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MDENINFKQSELPVTCGEVKGTLYKERFKQGTSKKCIQSEDKKWFTPREFEIEGDRGASKNWKLSIRCGGYTLKVLMENK FLPEPPSTRKKVTIK ; _entity_poly.pdbx_seq_one_letter_code_can ;MDENINFKQSELPVTCGEVKGTLYKERFKQGTSKKCIQSEDKKWFTPREFEIEGDRGASKNWKLSIRCGGYTLKVLMENK FLPEPPSTRKKVTIK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASP n 1 3 GLU n 1 4 ASN n 1 5 ILE n 1 6 ASN n 1 7 PHE n 1 8 LYS n 1 9 GLN n 1 10 SER n 1 11 GLU n 1 12 LEU n 1 13 PRO n 1 14 VAL n 1 15 THR n 1 16 CYS n 1 17 GLY n 1 18 GLU n 1 19 VAL n 1 20 LYS n 1 21 GLY n 1 22 THR n 1 23 LEU n 1 24 TYR n 1 25 LYS n 1 26 GLU n 1 27 ARG n 1 28 PHE n 1 29 LYS n 1 30 GLN n 1 31 GLY n 1 32 THR n 1 33 SER n 1 34 LYS n 1 35 LYS n 1 36 CYS n 1 37 ILE n 1 38 GLN n 1 39 SER n 1 40 GLU n 1 41 ASP n 1 42 LYS n 1 43 LYS n 1 44 TRP n 1 45 PHE n 1 46 THR n 1 47 PRO n 1 48 ARG n 1 49 GLU n 1 50 PHE n 1 51 GLU n 1 52 ILE n 1 53 GLU n 1 54 GLY n 1 55 ASP n 1 56 ARG n 1 57 GLY n 1 58 ALA n 1 59 SER n 1 60 LYS n 1 61 ASN n 1 62 TRP n 1 63 LYS n 1 64 LEU n 1 65 SER n 1 66 ILE n 1 67 ARG n 1 68 CYS n 1 69 GLY n 1 70 GLY n 1 71 TYR n 1 72 THR n 1 73 LEU n 1 74 LYS n 1 75 VAL n 1 76 LEU n 1 77 MET n 1 78 GLU n 1 79 ASN n 1 80 LYS n 1 81 PHE n 1 82 LEU n 1 83 PRO n 1 84 GLU n 1 85 PRO n 1 86 PRO n 1 87 SER n 1 88 THR n 1 89 ARG n 1 90 LYS n 1 91 LYS n 1 92 VAL n 1 93 THR n 1 94 ILE n 1 95 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene 'EXPRESSED AS FUSION PROTEIN WITH N-TERMINAL 6-HISTIDINE TAG AND A TEV PROTEASE CLEAVAGE SITE' _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'MODIFIED PET-24D' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 1H5P 1 ? ? 1H5P ? 2 UNP SP10_HUMAN 1 ? ? P23497 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1H5P A 1 ? 1 ? 1H5P 594 ? 594 ? 594 594 2 2 1H5P A 2 ? 95 ? P23497 595 ? 688 ? 595 688 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1H5P VAL A 92 ? UNP P23497 ARG 685 variant 685 1 1 1H5P THR A 93 ? UNP P23497 ILE 686 variant 686 2 1 1H5P ILE A 94 ? UNP P23497 LEU 687 variant 687 3 1 1H5P LYS A 95 ? UNP P23497 GLU 688 variant 688 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 '3D 13C-SEPARATED NOESY' 1 2 1 '3D 15N-SEPARATED NOESY' 1 3 1 HNHA 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 295.0 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.ionic_strength '20 MM SODIUM PHOSPHATE, 50 MM SODIUM CHLORIDE' _pdbx_nmr_exptl_sample_conditions.ionic_strength_units ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.temperature_units K _pdbx_nmr_exptl_sample_conditions.label ? # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.2 MM PROTEIN, 20 MM SODIUM PHOSPHATE PH 6.5, 50 MM NACL, 4 MM DTT' _pdbx_nmr_sample_details.solvent_system ? _pdbx_nmr_sample_details.label ? _pdbx_nmr_sample_details.type ? _pdbx_nmr_sample_details.details ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 DRX Bruker 600 ? 2 DRX Bruker 750 ? # _pdbx_nmr_refine.entry_id 1H5P _pdbx_nmr_refine.method 'ARIA AMBIGUOUS DISTANCE RESTRAINTS SIMULATED ANNEALING WITH TORSION ANGLE DYNAMICS' _pdbx_nmr_refine.details ;DURING THE STRUCTURE CALCULATIONS, THE PROGRAM ARIA 1.0 (M.NILGES & S.I.O'DONOGHUE) WAS USED TO EMPLOY DISTANCE RESTRAINTS DERIVED FROM AMBIGUOUSLY ASSIGNED NOES. FROM A TOTAL OF 2120 NOES, ABOUT 80% WERE MANUALLY ASSIGNED, THE REMAINDER WAS ASSIGNED BY ARIA. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1H5P _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'ACCEPTABLE COVALENT GEOMETRY, FAVOURABLE NON-BOND ENERGY, FEWEST RESTRAINT VIOLATIONS, LOWEST OVERALL ENERGIES' # _pdbx_nmr_representative.entry_id 1H5P _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria ? # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement CNS 0.3 'BRUNGER,ADAMS,CLORE,DELANO,GROS, GROSSE- KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, RICE,SIMONSON,WARREN' 1 'structure solution' NMRPIPE ? ? 2 'structure solution' XEASY ? ? 3 'structure solution' ARIA 1.0 ? 4 'structure solution' CNS 0.9 ? 5 # _exptl.entry_id 1H5P _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1H5P _struct.title 'Solution structure of the human Sp100b SAND domain by heteronuclear NMR.' _struct.pdbx_descriptor 'NUCLEAR AUTOANTIGEN SP100-B' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1H5P _struct_keywords.pdbx_keywords 'NUCLEAR PROTEIN' _struct_keywords.text 'TRANSCRIPTION, DNA BINDING, SP100B, SAND DOMAIN, KDWK, ANTIGEN, NUCLEAR PROTEIN, ALTERNATIVE SPLICING' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 26 ? LYS A 29 ? GLU A 619 LYS A 622 1 ? 4 HELX_P HELX_P2 2 ARG A 48 ? GLY A 54 ? ARG A 641 GLY A 647 1 ? 7 HELX_P HELX_P3 3 TRP A 62 ? SER A 65 ? TRP A 655 SER A 658 1 ? 4 HELX_P HELX_P4 4 THR A 72 ? ASN A 79 ? THR A 665 ASN A 672 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AA 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 LYS A 43 ? PHE A 45 ? LYS A 636 PHE A 638 AA 2 ILE A 37 ? SER A 39 ? ILE A 630 SER A 632 AA 3 LYS A 20 ? TYR A 24 ? LYS A 613 TYR A 617 AA 4 GLU A 11 ? THR A 15 ? GLU A 604 THR A 608 AA 5 ILE A 66 ? CYS A 68 ? ILE A 659 CYS A 661 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N PHE A 45 ? N PHE A 638 O ILE A 37 ? O ILE A 630 AA 2 3 N GLN A 38 ? N GLN A 631 O THR A 22 ? O THR A 615 AA 3 4 N LEU A 23 ? N LEU A 616 O LEU A 12 ? O LEU A 605 AA 4 5 N THR A 15 ? N THR A 608 O ARG A 67 ? O ARG A 660 # _database_PDB_matrix.entry_id 1H5P _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1H5P _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 594 594 MET MET A . n A 1 2 ASP 2 595 595 ASP ASP A . n A 1 3 GLU 3 596 596 GLU GLU A . n A 1 4 ASN 4 597 597 ASN ASN A . n A 1 5 ILE 5 598 598 ILE ILE A . n A 1 6 ASN 6 599 599 ASN ASN A . n A 1 7 PHE 7 600 600 PHE PHE A . n A 1 8 LYS 8 601 601 LYS LYS A . n A 1 9 GLN 9 602 602 GLN GLN A . n A 1 10 SER 10 603 603 SER SER A . n A 1 11 GLU 11 604 604 GLU GLU A . n A 1 12 LEU 12 605 605 LEU LEU A . n A 1 13 PRO 13 606 606 PRO PRO A . n A 1 14 VAL 14 607 607 VAL VAL A . n A 1 15 THR 15 608 608 THR THR A . n A 1 16 CYS 16 609 609 CYS CYS A . n A 1 17 GLY 17 610 610 GLY GLY A . n A 1 18 GLU 18 611 611 GLU GLU A . n A 1 19 VAL 19 612 612 VAL VAL A . n A 1 20 LYS 20 613 613 LYS LYS A . n A 1 21 GLY 21 614 614 GLY GLY A . n A 1 22 THR 22 615 615 THR THR A . n A 1 23 LEU 23 616 616 LEU LEU A . n A 1 24 TYR 24 617 617 TYR TYR A . n A 1 25 LYS 25 618 618 LYS LYS A . n A 1 26 GLU 26 619 619 GLU GLU A . n A 1 27 ARG 27 620 620 ARG ARG A . n A 1 28 PHE 28 621 621 PHE PHE A . n A 1 29 LYS 29 622 622 LYS LYS A . n A 1 30 GLN 30 623 623 GLN GLN A . n A 1 31 GLY 31 624 624 GLY GLY A . n A 1 32 THR 32 625 625 THR THR A . n A 1 33 SER 33 626 626 SER SER A . n A 1 34 LYS 34 627 627 LYS LYS A . n A 1 35 LYS 35 628 628 LYS LYS A . n A 1 36 CYS 36 629 629 CYS CYS A . n A 1 37 ILE 37 630 630 ILE ILE A . n A 1 38 GLN 38 631 631 GLN GLN A . n A 1 39 SER 39 632 632 SER SER A . n A 1 40 GLU 40 633 633 GLU GLU A . n A 1 41 ASP 41 634 634 ASP ASP A . n A 1 42 LYS 42 635 635 LYS LYS A . n A 1 43 LYS 43 636 636 LYS LYS A . n A 1 44 TRP 44 637 637 TRP TRP A . n A 1 45 PHE 45 638 638 PHE PHE A . n A 1 46 THR 46 639 639 THR THR A . n A 1 47 PRO 47 640 640 PRO PRO A . n A 1 48 ARG 48 641 641 ARG ARG A . n A 1 49 GLU 49 642 642 GLU GLU A . n A 1 50 PHE 50 643 643 PHE PHE A . n A 1 51 GLU 51 644 644 GLU GLU A . n A 1 52 ILE 52 645 645 ILE ILE A . n A 1 53 GLU 53 646 646 GLU GLU A . n A 1 54 GLY 54 647 647 GLY GLY A . n A 1 55 ASP 55 648 648 ASP ASP A . n A 1 56 ARG 56 649 649 ARG ARG A . n A 1 57 GLY 57 650 650 GLY GLY A . n A 1 58 ALA 58 651 651 ALA ALA A . n A 1 59 SER 59 652 652 SER SER A . n A 1 60 LYS 60 653 653 LYS LYS A . n A 1 61 ASN 61 654 654 ASN ASN A . n A 1 62 TRP 62 655 655 TRP TRP A . n A 1 63 LYS 63 656 656 LYS LYS A . n A 1 64 LEU 64 657 657 LEU LEU A . n A 1 65 SER 65 658 658 SER SER A . n A 1 66 ILE 66 659 659 ILE ILE A . n A 1 67 ARG 67 660 660 ARG ARG A . n A 1 68 CYS 68 661 661 CYS CYS A . n A 1 69 GLY 69 662 662 GLY GLY A . n A 1 70 GLY 70 663 663 GLY GLY A . n A 1 71 TYR 71 664 664 TYR TYR A . n A 1 72 THR 72 665 665 THR THR A . n A 1 73 LEU 73 666 666 LEU LEU A . n A 1 74 LYS 74 667 667 LYS LYS A . n A 1 75 VAL 75 668 668 VAL VAL A . n A 1 76 LEU 76 669 669 LEU LEU A . n A 1 77 MET 77 670 670 MET MET A . n A 1 78 GLU 78 671 671 GLU GLU A . n A 1 79 ASN 79 672 672 ASN ASN A . n A 1 80 LYS 80 673 673 LYS LYS A . n A 1 81 PHE 81 674 674 PHE PHE A . n A 1 82 LEU 82 675 675 LEU LEU A . n A 1 83 PRO 83 676 676 PRO PRO A . n A 1 84 GLU 84 677 677 GLU GLU A . n A 1 85 PRO 85 678 678 PRO PRO A . n A 1 86 PRO 86 679 679 PRO PRO A . n A 1 87 SER 87 680 680 SER SER A . n A 1 88 THR 88 681 681 THR THR A . n A 1 89 ARG 89 682 682 ARG ARG A . n A 1 90 LYS 90 683 683 LYS LYS A . n A 1 91 LYS 91 684 684 LYS LYS A . n A 1 92 VAL 92 685 685 VAL VAL A . n A 1 93 THR 93 686 686 THR THR A . n A 1 94 ILE 94 687 687 ILE ILE A . n A 1 95 LYS 95 688 688 LYS LYS A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2001-07-06 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-03-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Source and taxonomy' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' citation 2 4 'Structure model' entity_src_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_citation.journal_abbrev' 2 4 'Structure model' '_citation.page_last' 3 4 'Structure model' '_citation.title' 4 4 'Structure model' '_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id' 5 4 'Structure model' '_entity_src_gen.pdbx_host_org_scientific_name' 6 4 'Structure model' '_entity_src_gen.pdbx_host_org_strain' 7 4 'Structure model' '_entity_src_gen.pdbx_host_org_variant' # _pdbx_entry_details.entry_id 1H5P _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE STRUCTURE IS FOR THE SPLICE VARIANT SP100B SAND DOMAIN. THE RESIDUES 685 -688 (RILE IN ISOFORM SP100-A) ARE (VTIK IN ISOFORM SP100-B) DIFFERENT IN THE TWO SPLICE VARIANTS MET A 594 IS A CLONING ARTIFACT. ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 595 ? ? 59.70 179.31 2 1 GLU A 596 ? ? -129.36 -96.70 3 1 SER A 603 ? ? 69.62 -16.52 4 1 GLU A 611 ? ? 71.69 -5.38 5 1 THR A 625 ? ? -67.75 7.48 6 1 ASP A 648 ? ? -94.15 -75.95 7 1 ARG A 649 ? ? 178.96 -39.99 8 1 LYS A 653 ? ? 68.16 -71.67 9 1 ASN A 672 ? ? -88.94 -75.19 10 1 LYS A 673 ? ? -176.58 -18.26 11 1 PRO A 676 ? ? -64.78 -92.73 12 1 GLU A 677 ? ? 61.32 161.07 13 1 PRO A 679 ? ? -39.35 102.78 14 1 THR A 681 ? ? -156.89 -87.38 15 1 ARG A 682 ? ? -174.58 -147.05 16 1 ILE A 687 ? ? 65.82 134.30 17 2 GLU A 596 ? ? -104.77 -102.88 18 2 SER A 603 ? ? 73.20 -28.54 19 2 GLU A 611 ? ? 69.56 -2.36 20 2 GLU A 633 ? ? 74.76 -55.71 21 2 ASP A 634 ? ? 177.77 -24.94 22 2 LYS A 635 ? ? -176.25 19.68 23 2 PRO A 640 ? ? -46.92 -17.82 24 2 ASP A 648 ? ? -123.62 -77.73 25 2 ARG A 649 ? ? 178.32 -31.04 26 2 LYS A 653 ? ? 65.39 -79.30 27 2 LYS A 673 ? ? -178.45 -25.59 28 2 LEU A 675 ? ? 38.11 93.66 29 2 SER A 680 ? ? 58.60 87.23 30 2 VAL A 685 ? ? -78.36 -120.86 31 2 THR A 686 ? ? 57.83 90.36 32 3 ASN A 597 ? ? -161.61 -36.89 33 3 ASN A 599 ? ? -71.56 -162.29 34 3 PHE A 600 ? ? -156.29 -1.30 35 3 GLN A 602 ? ? -66.85 8.46 36 3 SER A 603 ? ? 73.82 -31.71 37 3 GLU A 611 ? ? 73.91 -4.19 38 3 LYS A 622 ? ? -49.73 -16.26 39 3 GLU A 633 ? ? 73.78 -55.78 40 3 ASP A 634 ? ? 176.16 -25.38 41 3 LYS A 635 ? ? -175.89 15.62 42 3 PRO A 640 ? ? -48.30 -19.95 43 3 ASP A 648 ? ? -99.71 -75.24 44 3 ARG A 649 ? ? -175.35 -30.66 45 3 SER A 652 ? ? -73.70 -147.20 46 3 LYS A 653 ? ? -178.33 -50.67 47 3 ASN A 672 ? ? -87.34 -76.09 48 3 LYS A 673 ? ? 171.43 -16.76 49 3 GLU A 677 ? ? -117.36 74.68 50 3 SER A 680 ? ? -68.11 -107.73 51 3 LYS A 684 ? ? 55.45 77.58 52 3 VAL A 685 ? ? 60.74 -87.16 53 3 THR A 686 ? ? -152.31 -13.80 54 4 GLU A 596 ? ? -102.09 -89.13 55 4 GLU A 611 ? ? 69.03 -1.88 56 4 LYS A 622 ? ? -49.49 -17.12 57 4 THR A 625 ? ? -76.53 43.56 58 4 PRO A 640 ? ? -47.12 -17.85 59 4 ASP A 648 ? ? -147.27 -78.51 60 4 ARG A 649 ? ? 178.07 -32.63 61 4 LYS A 653 ? ? 63.37 -84.37 62 4 ASN A 672 ? ? -76.83 -75.06 63 4 LYS A 673 ? ? 168.42 31.06 64 4 GLU A 677 ? ? 74.71 165.16 65 4 LYS A 684 ? ? 65.59 137.23 66 4 THR A 686 ? ? 59.18 78.22 67 5 ASP A 595 ? ? -70.50 -166.09 68 5 ASN A 597 ? ? -159.61 -51.25 69 5 ASN A 599 ? ? -64.17 -178.46 70 5 PHE A 600 ? ? -142.15 -1.12 71 5 GLU A 611 ? ? 67.50 -2.11 72 5 GLU A 633 ? ? 75.63 -56.02 73 5 ASP A 634 ? ? 176.49 -25.38 74 5 LYS A 635 ? ? -177.15 18.49 75 5 ASP A 648 ? ? -155.96 -81.10 76 5 ARG A 649 ? ? -179.08 -32.25 77 5 LYS A 653 ? ? 64.64 -79.23 78 5 ASN A 672 ? ? -82.22 -76.65 79 5 LYS A 673 ? ? 167.07 23.56 80 5 PRO A 678 ? ? -49.78 165.52 81 5 PRO A 679 ? ? -45.91 155.26 82 5 THR A 681 ? ? 71.36 -54.50 83 5 ARG A 682 ? ? 64.72 169.20 84 5 VAL A 685 ? ? -85.98 39.11 85 5 THR A 686 ? ? 64.92 158.28 86 6 ASN A 597 ? ? -146.97 -51.99 87 6 GLN A 602 ? ? -84.20 -157.83 88 6 GLU A 611 ? ? 68.24 -0.03 89 6 GLU A 633 ? ? 74.63 -55.43 90 6 ASP A 634 ? ? 178.54 -25.34 91 6 LYS A 635 ? ? -178.06 17.81 92 6 PRO A 640 ? ? -46.24 -18.42 93 6 LYS A 653 ? ? 63.01 -83.12 94 6 ASN A 672 ? ? -81.78 -73.83 95 6 LYS A 673 ? ? 163.42 31.61 96 6 PRO A 676 ? ? -86.28 -85.22 97 6 PRO A 678 ? ? -43.12 109.77 98 6 PRO A 679 ? ? -37.55 144.27 99 6 THR A 681 ? ? 50.05 92.00 100 7 ASP A 595 ? ? -167.47 114.48 101 7 GLU A 596 ? ? -176.79 -71.26 102 7 ASN A 599 ? ? -82.94 -150.43 103 7 PHE A 600 ? ? -148.02 -1.13 104 7 GLU A 611 ? ? 67.11 -1.27 105 7 LYS A 622 ? ? -49.38 -15.49 106 7 THR A 625 ? ? -69.26 23.12 107 7 PRO A 640 ? ? -47.28 -17.73 108 7 ASP A 648 ? ? -70.17 -76.28 109 7 ARG A 649 ? ? 173.52 -31.56 110 7 SER A 652 ? ? -75.28 -145.09 111 7 LYS A 653 ? ? -178.50 -56.13 112 7 ASN A 672 ? ? -90.68 -78.62 113 7 LYS A 673 ? ? -170.00 9.37 114 7 LEU A 675 ? ? -47.22 150.72 115 7 THR A 681 ? ? -167.55 14.69 116 7 ARG A 682 ? ? -159.92 3.71 117 7 VAL A 685 ? ? 65.87 129.91 118 7 ILE A 687 ? ? 59.97 99.16 119 8 GLU A 596 ? ? 74.73 -62.21 120 8 ILE A 598 ? ? -109.14 70.09 121 8 GLN A 602 ? ? -71.13 -162.82 122 8 GLU A 611 ? ? 69.94 -1.75 123 8 PRO A 640 ? ? -48.43 -15.72 124 8 ASP A 648 ? ? -98.39 -65.81 125 8 ARG A 649 ? ? -179.42 -38.81 126 8 LYS A 653 ? ? 70.79 -70.43 127 8 ASN A 654 ? ? -56.33 95.89 128 8 ASN A 672 ? ? -79.90 -74.30 129 8 LYS A 673 ? ? 177.25 -23.17 130 8 PRO A 676 ? ? -49.12 -83.39 131 8 GLU A 677 ? ? 41.08 88.36 132 8 SER A 680 ? ? -163.49 80.84 133 8 THR A 681 ? ? -154.04 -59.53 134 8 ARG A 682 ? ? 56.86 -161.77 135 8 LYS A 683 ? ? -143.17 -60.89 136 9 ASP A 595 ? ? -79.44 -162.29 137 9 ASN A 599 ? ? -78.81 -167.54 138 9 PHE A 600 ? ? -153.19 -1.24 139 9 SER A 603 ? ? 72.28 -28.05 140 9 GLU A 611 ? ? 73.59 -3.75 141 9 CYS A 629 ? ? -153.62 3.45 142 9 GLU A 633 ? ? 72.78 -56.08 143 9 ASP A 634 ? ? 175.25 -24.67 144 9 LYS A 635 ? ? -172.72 17.76 145 9 ASP A 648 ? ? -146.78 -78.23 146 9 ARG A 649 ? ? -171.65 -47.84 147 9 ASN A 672 ? ? -84.85 -77.70 148 9 LYS A 673 ? ? 172.62 32.80 149 9 GLU A 677 ? ? -53.45 106.80 150 9 SER A 680 ? ? -177.60 94.81 151 9 THR A 681 ? ? -160.29 -60.94 152 9 LYS A 683 ? ? 57.53 -151.07 153 9 ILE A 687 ? ? -92.12 -63.26 154 10 ASP A 595 ? ? 59.49 174.65 155 10 ASN A 597 ? ? -165.18 -49.37 156 10 GLU A 611 ? ? 67.46 -2.62 157 10 THR A 625 ? ? -74.73 39.54 158 10 GLU A 633 ? ? 74.96 -55.86 159 10 ASP A 634 ? ? 176.60 -25.14 160 10 LYS A 635 ? ? -177.20 17.34 161 10 PRO A 640 ? ? -46.14 -17.79 162 10 ASP A 648 ? ? -142.24 -78.41 163 10 ARG A 649 ? ? 175.49 -43.52 164 10 LYS A 653 ? ? 63.35 -80.30 165 10 ASN A 654 ? ? -66.77 94.89 166 10 ASN A 672 ? ? -79.24 -75.64 167 10 LYS A 673 ? ? 170.76 -19.31 168 10 SER A 680 ? ? 63.19 -83.63 169 10 THR A 681 ? ? 63.56 97.24 170 10 ARG A 682 ? ? -112.12 -86.49 171 10 LYS A 683 ? ? -166.35 -69.15 #