data_1HEK # _entry.id 1HEK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.308 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1HEK PDBE EBI-5572 WWPDB D_1290005572 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1EIA unspecified 'X-RAY CRYSTAL STRUCTURE OF EQUINE INFECTIOUS ANEMIA VIRUS(EIAV) CAPSID PROTEIN P26' PDB 2EIA unspecified 'X-RAY CRYSTAL STRUCTURE OF EQUINE INFECTIOUS ANEMIA VIRUS(EIAV) CAPSID PROTEIN P26' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1HEK _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2000-11-24 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hatanaka, H.' 1 'Iourin, O.' 2 'Rao, Z.' 3 'Fry, E.' 4 'Kingsman, A.' 5 'Stuart, D.I.' 6 # _citation.id primary _citation.title 'Structure of Equine Infectious Anemia Virus Matrix Protein.' _citation.journal_abbrev J.Virol. _citation.journal_volume 76 _citation.page_first 1876 _citation.page_last ? _citation.year 2002 _citation.journal_id_ASTM JOVIAM _citation.country US _citation.journal_id_ISSN 0022-538X _citation.journal_id_CSD 0825 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11799182 _citation.pdbx_database_id_DOI 10.1128/JVI.76.4.1876-1883.2002 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hatanaka, H.' 1 ? primary 'Iourin, O.' 2 ? primary 'Rao, Z.' 3 ? primary 'Fry, E.' 4 ? primary 'Kingsman, A.' 5 ? primary 'Stuart, D.I.' 6 ? # _cell.entry_id 1HEK _cell.length_a 47.150 _cell.length_b 47.150 _cell.length_c 204.770 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HEK _symmetry.space_group_name_H-M 'P 65' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'GAG POLYPROTEIN, CORE PROTEIN P15' _entity.formula_weight 15022.591 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'MA PROTEIN' _entity.details 'THE PROTEIN HAS AN N-TERMINAL EXTENTION OF SEVEN RESIDUES DUE TO THE EXPRESSION CONSTRUCT.' # _entity_name_com.entity_id 1 _entity_name_com.name 'EIAV MA, MATRIX PROTEIN, P15' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;A(MSE)ADIGS(MSE)GDPLTWSKALKKLEKVTVQGSQKLTTGNCNWALSLVDLFHDTNFVKEKDWQLRDVIPLLEDVTQ TLSGQEREAFERTWWAISAVK(MSE)GLQINNVVDGKASFQLLRAKYEKKTANKKQSEPSEEY ; _entity_poly.pdbx_seq_one_letter_code_can ;AMADIGSMGDPLTWSKALKKLEKVTVQGSQKLTTGNCNWALSLVDLFHDTNFVKEKDWQLRDVIPLLEDVTQTLSGQERE AFERTWWAISAVKMGLQINNVVDGKASFQLLRAKYEKKTANKKQSEPSEEY ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 MSE n 1 3 ALA n 1 4 ASP n 1 5 ILE n 1 6 GLY n 1 7 SER n 1 8 MSE n 1 9 GLY n 1 10 ASP n 1 11 PRO n 1 12 LEU n 1 13 THR n 1 14 TRP n 1 15 SER n 1 16 LYS n 1 17 ALA n 1 18 LEU n 1 19 LYS n 1 20 LYS n 1 21 LEU n 1 22 GLU n 1 23 LYS n 1 24 VAL n 1 25 THR n 1 26 VAL n 1 27 GLN n 1 28 GLY n 1 29 SER n 1 30 GLN n 1 31 LYS n 1 32 LEU n 1 33 THR n 1 34 THR n 1 35 GLY n 1 36 ASN n 1 37 CYS n 1 38 ASN n 1 39 TRP n 1 40 ALA n 1 41 LEU n 1 42 SER n 1 43 LEU n 1 44 VAL n 1 45 ASP n 1 46 LEU n 1 47 PHE n 1 48 HIS n 1 49 ASP n 1 50 THR n 1 51 ASN n 1 52 PHE n 1 53 VAL n 1 54 LYS n 1 55 GLU n 1 56 LYS n 1 57 ASP n 1 58 TRP n 1 59 GLN n 1 60 LEU n 1 61 ARG n 1 62 ASP n 1 63 VAL n 1 64 ILE n 1 65 PRO n 1 66 LEU n 1 67 LEU n 1 68 GLU n 1 69 ASP n 1 70 VAL n 1 71 THR n 1 72 GLN n 1 73 THR n 1 74 LEU n 1 75 SER n 1 76 GLY n 1 77 GLN n 1 78 GLU n 1 79 ARG n 1 80 GLU n 1 81 ALA n 1 82 PHE n 1 83 GLU n 1 84 ARG n 1 85 THR n 1 86 TRP n 1 87 TRP n 1 88 ALA n 1 89 ILE n 1 90 SER n 1 91 ALA n 1 92 VAL n 1 93 LYS n 1 94 MSE n 1 95 GLY n 1 96 LEU n 1 97 GLN n 1 98 ILE n 1 99 ASN n 1 100 ASN n 1 101 VAL n 1 102 VAL n 1 103 ASP n 1 104 GLY n 1 105 LYS n 1 106 ALA n 1 107 SER n 1 108 PHE n 1 109 GLN n 1 110 LEU n 1 111 LEU n 1 112 ARG n 1 113 ALA n 1 114 LYS n 1 115 TYR n 1 116 GLU n 1 117 LYS n 1 118 LYS n 1 119 THR n 1 120 ALA n 1 121 ASN n 1 122 LYS n 1 123 LYS n 1 124 GLN n 1 125 SER n 1 126 GLU n 1 127 PRO n 1 128 SER n 1 129 GLU n 1 130 GLU n 1 131 TYR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name EIAV _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene GAG _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ISOLATE WYOMING' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'EQUINE INFECTIOUS ANEMIA VIRUS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11665 _entity_src_gen.pdbx_gene_src_variant 'CLONE P3.2-1' _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET-32A _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 1HEK 1 ? ? 1HEK ? 2 UNP GAG_EIAVY 1 ? ? P03351 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1HEK A 1 ? 7 ? 1HEK -6 ? 0 ? -6 0 2 2 1HEK A 8 ? 131 ? P03351 1 ? 124 ? 1 124 3 1 1HEK B 1 ? 7 ? 1HEK -6 ? 0 ? -6 0 4 2 1HEK B 8 ? 131 ? P03351 1 ? 124 ? 1 124 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1HEK MSE A 2 ? PDB 1HEK MET -5 'modified residue' -5 1 1 1HEK MSE A 8 ? UNP P03351 MET 1 'modified residue' 1 2 1 1HEK MSE A 94 ? UNP P03351 MET 87 'modified residue' 87 3 3 1HEK MSE B 2 ? PDB 1HEK MET -5 'modified residue' -5 4 3 1HEK MSE B 8 ? UNP P03351 MET 1 'modified residue' 1 5 3 1HEK MSE B 94 ? UNP P03351 MET 87 'modified residue' 87 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1HEK _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.55 _exptl_crystal.density_percent_sol 51.43 _exptl_crystal.description 'FIGURES ARE SHOWN FOR THE WAVELENGTH 0.91116.' # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.50 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '30% PEG5000, 0.2M AMMONIUM SULFATE, 0.1M MES (PH6.5), 291K, pH 6.50' # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1998-04-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9116 1.0 2 0.9781 1.0 3 0.9778 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE BM14' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline BM14 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.9116, 0.9781, 0.9778' # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1HEK _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 24.000 _reflns.d_resolution_high 2.800 _reflns.number_obs 6347 _reflns.number_all ? _reflns.percent_possible_obs 99.0 _reflns.pdbx_Rmerge_I_obs 0.07400 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 11.4000 _reflns.B_iso_Wilson_estimate 27.6 _reflns.pdbx_redundancy 3.000 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.80 _reflns_shell.d_res_low 2.90 _reflns_shell.percent_possible_all 99.0 _reflns_shell.Rmerge_I_obs 0.60000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 2.80 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1HEK _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 6153 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 23.78 _refine.ls_d_res_high 2.80 _refine.ls_percent_reflns_obs 97.2 _refine.ls_R_factor_obs 0.279 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.279 _refine.ls_R_factor_R_free 0.373 _refine.ls_R_factor_R_free_error 0.014 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.9 _refine.ls_number_reflns_R_free 671 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 79.4 _refine.aniso_B[1][1] 22.08 _refine.aniso_B[2][2] 22.08 _refine.aniso_B[3][3] -44.15 _refine.aniso_B[1][2] 24.47 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.26 _refine.solvent_model_param_bsol 50 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'THE C-TERMINAL RESIDUES 110 TO 124 WERE NOT SEEN IN THE DENSITY MAPS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 1HEK _refine_analyze.Luzzati_coordinate_error_obs 0.56 _refine_analyze.Luzzati_sigma_a_obs 0.88 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.70 _refine_analyze.Luzzati_sigma_a_free 1.14 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1844 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1844 _refine_hist.d_res_high 2.80 _refine_hist.d_res_low 23.78 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.015 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.7 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 21.5 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.93 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 2.06 3.00 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 3.64 4.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.81 4.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 4.50 5.00 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.80 _refine_ls_shell.d_res_low 2.98 _refine_ls_shell.number_reflns_R_work 783 _refine_ls_shell.R_factor_R_work 0.458 _refine_ls_shell.percent_reflns_obs 85.1 _refine_ls_shell.R_factor_R_free 0.587 _refine_ls_shell.R_factor_R_free_error 0.055 _refine_ls_shell.percent_reflns_R_free 12.8 _refine_ls_shell.number_reflns_R_free 115 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _pdbx_xplor_file.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_xplor_file.serial_no 1 _pdbx_xplor_file.param_file PROTEIN_REP.PARAM _pdbx_xplor_file.topol_file PROTEIN.TOP # _struct_ncs_oper.id 1 _struct_ncs_oper.code given _struct_ncs_oper.details ? _struct_ncs_oper.matrix[1][1] 0.898050 _struct_ncs_oper.matrix[1][2] -0.436290 _struct_ncs_oper.matrix[1][3] 0.056170 _struct_ncs_oper.matrix[2][1] 0.439150 _struct_ncs_oper.matrix[2][2] 0.896610 _struct_ncs_oper.matrix[2][3] -0.056820 _struct_ncs_oper.matrix[3][1] -0.025580 _struct_ncs_oper.matrix[3][2] 0.075700 _struct_ncs_oper.matrix[3][3] 0.996800 _struct_ncs_oper.vector[1] 11.22631 _struct_ncs_oper.vector[2] 21.75827 _struct_ncs_oper.vector[3] -18.20185 # _struct.entry_id 1HEK _struct.title 'Crystal structure of equine infectious anaemia virus matrix antigen (EIAV MA)' _struct.pdbx_descriptor 'GAG POLYPROTEIN, CORE PROTEIN P15' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1HEK _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text 'VIRAL PROTEIN, MEMBRANE-BINDING SWITCHING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 13 ? VAL A 24 ? THR A 6 VAL A 17 1 ? 12 HELX_P HELX_P2 2 THR A 33 ? HIS A 48 ? THR A 26 HIS A 41 1 ? 16 HELX_P HELX_P3 3 GLN A 59 ? GLN A 72 ? GLN A 52 GLN A 65 1 ? 14 HELX_P HELX_P4 4 GLN A 77 ? MSE A 94 ? GLN A 70 MSE A 87 1 ? 18 HELX_P HELX_P5 5 GLY A 104 ? GLU A 116 ? GLY A 97 GLU A 109 1 ? 13 HELX_P HELX_P6 6 THR B 13 ? GLU B 22 ? THR B 6 GLU B 15 1 ? 10 HELX_P HELX_P7 7 THR B 33 ? HIS B 48 ? THR B 26 HIS B 41 1 ? 16 HELX_P HELX_P8 8 ASN B 51 ? GLU B 55 ? ASN B 44 GLU B 48 5 ? 5 HELX_P HELX_P9 9 GLN B 59 ? GLN B 72 ? GLN B 52 GLN B 65 1 ? 14 HELX_P HELX_P10 10 GLY B 76 ? MSE B 94 ? GLY B 69 MSE B 87 1 ? 19 HELX_P HELX_P11 11 VAL B 101 ? ASP B 103 ? VAL B 94 ASP B 96 5 ? 3 HELX_P HELX_P12 12 GLY B 104 ? LYS B 114 ? GLY B 97 LYS B 107 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A ALA 1 C ? ? ? 1_555 A MSE 2 N ? ? A ALA -6 A MSE -5 1_555 ? ? ? ? ? ? ? 1.329 ? covale2 covale both ? A MSE 2 C ? ? ? 1_555 A ALA 3 N ? ? A MSE -5 A ALA -4 1_555 ? ? ? ? ? ? ? 1.334 ? covale3 covale both ? A SER 7 C ? ? ? 1_555 A MSE 8 N ? ? A SER 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.339 ? covale4 covale both ? A MSE 8 C ? ? ? 1_555 A GLY 9 N ? ? A MSE 1 A GLY 2 1_555 ? ? ? ? ? ? ? 1.329 ? covale5 covale both ? A LYS 93 C ? ? ? 1_555 A MSE 94 N ? ? A LYS 86 A MSE 87 1_555 ? ? ? ? ? ? ? 1.331 ? covale6 covale both ? A MSE 94 C ? ? ? 1_555 A GLY 95 N ? ? A MSE 87 A GLY 88 1_555 ? ? ? ? ? ? ? 1.329 ? covale7 covale both ? B MSE 2 C ? ? ? 1_555 B ALA 3 N ? ? B MSE -5 B ALA -4 1_555 ? ? ? ? ? ? ? 1.330 ? covale8 covale both ? B ALA 1 C ? ? ? 1_555 B MSE 2 N ? ? B ALA -6 B MSE -5 1_555 ? ? ? ? ? ? ? 1.330 ? covale9 covale both ? B SER 7 C ? ? ? 1_555 B MSE 8 N ? ? B SER 0 B MSE 1 1_555 ? ? ? ? ? ? ? 1.334 ? covale10 covale both ? B MSE 8 C ? ? ? 1_555 B GLY 9 N ? ? B MSE 1 B GLY 2 1_555 ? ? ? ? ? ? ? 1.333 ? covale11 covale both ? B LYS 93 C ? ? ? 1_555 B MSE 94 N ? ? B LYS 86 B MSE 87 1_555 ? ? ? ? ? ? ? 1.332 ? covale12 covale both ? B MSE 94 C ? ? ? 1_555 B GLY 95 N ? ? B MSE 87 B GLY 88 1_555 ? ? ? ? ? ? ? 1.335 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 1HEK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1HEK _atom_sites.fract_transf_matrix[1][1] 0.021209 _atom_sites.fract_transf_matrix[1][2] 0.012245 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024490 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004883 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 -6 -6 ALA ALA A . n A 1 2 MSE 2 -5 -5 MSE MSE A . n A 1 3 ALA 3 -4 -4 ALA ALA A . n A 1 4 ASP 4 -3 -3 ASP ASP A . n A 1 5 ILE 5 -2 -2 ILE ILE A . n A 1 6 GLY 6 -1 -1 GLY GLY A . n A 1 7 SER 7 0 0 SER SER A . n A 1 8 MSE 8 1 1 MSE MSE A . n A 1 9 GLY 9 2 2 GLY GLY A . n A 1 10 ASP 10 3 3 ASP ASP A . n A 1 11 PRO 11 4 4 PRO PRO A . n A 1 12 LEU 12 5 5 LEU LEU A . n A 1 13 THR 13 6 6 THR THR A . n A 1 14 TRP 14 7 7 TRP TRP A . n A 1 15 SER 15 8 8 SER SER A . n A 1 16 LYS 16 9 9 LYS LYS A . n A 1 17 ALA 17 10 10 ALA ALA A . n A 1 18 LEU 18 11 11 LEU LEU A . n A 1 19 LYS 19 12 12 LYS LYS A . n A 1 20 LYS 20 13 13 LYS LYS A . n A 1 21 LEU 21 14 14 LEU LEU A . n A 1 22 GLU 22 15 15 GLU GLU A . n A 1 23 LYS 23 16 16 LYS LYS A . n A 1 24 VAL 24 17 17 VAL VAL A . n A 1 25 THR 25 18 18 THR THR A . n A 1 26 VAL 26 19 19 VAL VAL A . n A 1 27 GLN 27 20 20 GLN GLN A . n A 1 28 GLY 28 21 21 GLY GLY A . n A 1 29 SER 29 22 22 SER SER A . n A 1 30 GLN 30 23 23 GLN GLN A . n A 1 31 LYS 31 24 24 LYS LYS A . n A 1 32 LEU 32 25 25 LEU LEU A . n A 1 33 THR 33 26 26 THR THR A . n A 1 34 THR 34 27 27 THR THR A . n A 1 35 GLY 35 28 28 GLY GLY A . n A 1 36 ASN 36 29 29 ASN ASN A . n A 1 37 CYS 37 30 30 CYS CYS A . n A 1 38 ASN 38 31 31 ASN ASN A . n A 1 39 TRP 39 32 32 TRP TRP A . n A 1 40 ALA 40 33 33 ALA ALA A . n A 1 41 LEU 41 34 34 LEU LEU A . n A 1 42 SER 42 35 35 SER SER A . n A 1 43 LEU 43 36 36 LEU LEU A . n A 1 44 VAL 44 37 37 VAL VAL A . n A 1 45 ASP 45 38 38 ASP ASP A . n A 1 46 LEU 46 39 39 LEU LEU A . n A 1 47 PHE 47 40 40 PHE PHE A . n A 1 48 HIS 48 41 41 HIS HIS A . n A 1 49 ASP 49 42 42 ASP ASP A . n A 1 50 THR 50 43 43 THR THR A . n A 1 51 ASN 51 44 44 ASN ASN A . n A 1 52 PHE 52 45 45 PHE PHE A . n A 1 53 VAL 53 46 46 VAL VAL A . n A 1 54 LYS 54 47 47 LYS LYS A . n A 1 55 GLU 55 48 48 GLU GLU A . n A 1 56 LYS 56 49 49 LYS LYS A . n A 1 57 ASP 57 50 50 ASP ASP A . n A 1 58 TRP 58 51 51 TRP TRP A . n A 1 59 GLN 59 52 52 GLN GLN A . n A 1 60 LEU 60 53 53 LEU LEU A . n A 1 61 ARG 61 54 54 ARG ARG A . n A 1 62 ASP 62 55 55 ASP ASP A . n A 1 63 VAL 63 56 56 VAL VAL A . n A 1 64 ILE 64 57 57 ILE ILE A . n A 1 65 PRO 65 58 58 PRO PRO A . n A 1 66 LEU 66 59 59 LEU LEU A . n A 1 67 LEU 67 60 60 LEU LEU A . n A 1 68 GLU 68 61 61 GLU GLU A . n A 1 69 ASP 69 62 62 ASP ASP A . n A 1 70 VAL 70 63 63 VAL VAL A . n A 1 71 THR 71 64 64 THR THR A . n A 1 72 GLN 72 65 65 GLN GLN A . n A 1 73 THR 73 66 66 THR THR A . n A 1 74 LEU 74 67 67 LEU LEU A . n A 1 75 SER 75 68 68 SER SER A . n A 1 76 GLY 76 69 69 GLY GLY A . n A 1 77 GLN 77 70 70 GLN GLN A . n A 1 78 GLU 78 71 71 GLU GLU A . n A 1 79 ARG 79 72 72 ARG ARG A . n A 1 80 GLU 80 73 73 GLU GLU A . n A 1 81 ALA 81 74 74 ALA ALA A . n A 1 82 PHE 82 75 75 PHE PHE A . n A 1 83 GLU 83 76 76 GLU GLU A . n A 1 84 ARG 84 77 77 ARG ARG A . n A 1 85 THR 85 78 78 THR THR A . n A 1 86 TRP 86 79 79 TRP TRP A . n A 1 87 TRP 87 80 80 TRP TRP A . n A 1 88 ALA 88 81 81 ALA ALA A . n A 1 89 ILE 89 82 82 ILE ILE A . n A 1 90 SER 90 83 83 SER SER A . n A 1 91 ALA 91 84 84 ALA ALA A . n A 1 92 VAL 92 85 85 VAL VAL A . n A 1 93 LYS 93 86 86 LYS LYS A . n A 1 94 MSE 94 87 87 MSE MSE A . n A 1 95 GLY 95 88 88 GLY GLY A . n A 1 96 LEU 96 89 89 LEU LEU A . n A 1 97 GLN 97 90 90 GLN GLN A . n A 1 98 ILE 98 91 91 ILE ILE A . n A 1 99 ASN 99 92 92 ASN ASN A . n A 1 100 ASN 100 93 93 ASN ASN A . n A 1 101 VAL 101 94 94 VAL VAL A . n A 1 102 VAL 102 95 95 VAL VAL A . n A 1 103 ASP 103 96 96 ASP ASP A . n A 1 104 GLY 104 97 97 GLY GLY A . n A 1 105 LYS 105 98 98 LYS LYS A . n A 1 106 ALA 106 99 99 ALA ALA A . n A 1 107 SER 107 100 100 SER SER A . n A 1 108 PHE 108 101 101 PHE PHE A . n A 1 109 GLN 109 102 102 GLN GLN A . n A 1 110 LEU 110 103 103 LEU LEU A . n A 1 111 LEU 111 104 104 LEU LEU A . n A 1 112 ARG 112 105 105 ARG ARG A . n A 1 113 ALA 113 106 106 ALA ALA A . n A 1 114 LYS 114 107 107 LYS LYS A . n A 1 115 TYR 115 108 108 TYR TYR A . n A 1 116 GLU 116 109 109 GLU GLU A . n A 1 117 LYS 117 110 ? ? ? A . n A 1 118 LYS 118 111 ? ? ? A . n A 1 119 THR 119 112 ? ? ? A . n A 1 120 ALA 120 113 ? ? ? A . n A 1 121 ASN 121 114 ? ? ? A . n A 1 122 LYS 122 115 ? ? ? A . n A 1 123 LYS 123 116 ? ? ? A . n A 1 124 GLN 124 117 ? ? ? A . n A 1 125 SER 125 118 ? ? ? A . n A 1 126 GLU 126 119 ? ? ? A . n A 1 127 PRO 127 120 ? ? ? A . n A 1 128 SER 128 121 ? ? ? A . n A 1 129 GLU 129 122 ? ? ? A . n A 1 130 GLU 130 123 ? ? ? A . n A 1 131 TYR 131 124 ? ? ? A . n B 1 1 ALA 1 -6 -6 ALA ALA B . n B 1 2 MSE 2 -5 -5 MSE MSE B . n B 1 3 ALA 3 -4 -4 ALA ALA B . n B 1 4 ASP 4 -3 -3 ASP ASP B . n B 1 5 ILE 5 -2 -2 ILE ILE B . n B 1 6 GLY 6 -1 -1 GLY GLY B . n B 1 7 SER 7 0 0 SER SER B . n B 1 8 MSE 8 1 1 MSE MSE B . n B 1 9 GLY 9 2 2 GLY GLY B . n B 1 10 ASP 10 3 3 ASP ASP B . n B 1 11 PRO 11 4 4 PRO PRO B . n B 1 12 LEU 12 5 5 LEU LEU B . n B 1 13 THR 13 6 6 THR THR B . n B 1 14 TRP 14 7 7 TRP TRP B . n B 1 15 SER 15 8 8 SER SER B . n B 1 16 LYS 16 9 9 LYS LYS B . n B 1 17 ALA 17 10 10 ALA ALA B . n B 1 18 LEU 18 11 11 LEU LEU B . n B 1 19 LYS 19 12 12 LYS LYS B . n B 1 20 LYS 20 13 13 LYS LYS B . n B 1 21 LEU 21 14 14 LEU LEU B . n B 1 22 GLU 22 15 15 GLU GLU B . n B 1 23 LYS 23 16 16 LYS LYS B . n B 1 24 VAL 24 17 17 VAL VAL B . n B 1 25 THR 25 18 18 THR THR B . n B 1 26 VAL 26 19 19 VAL VAL B . n B 1 27 GLN 27 20 20 GLN GLN B . n B 1 28 GLY 28 21 21 GLY GLY B . n B 1 29 SER 29 22 22 SER SER B . n B 1 30 GLN 30 23 23 GLN GLN B . n B 1 31 LYS 31 24 24 LYS LYS B . n B 1 32 LEU 32 25 25 LEU LEU B . n B 1 33 THR 33 26 26 THR THR B . n B 1 34 THR 34 27 27 THR THR B . n B 1 35 GLY 35 28 28 GLY GLY B . n B 1 36 ASN 36 29 29 ASN ASN B . n B 1 37 CYS 37 30 30 CYS CYS B . n B 1 38 ASN 38 31 31 ASN ASN B . n B 1 39 TRP 39 32 32 TRP TRP B . n B 1 40 ALA 40 33 33 ALA ALA B . n B 1 41 LEU 41 34 34 LEU LEU B . n B 1 42 SER 42 35 35 SER SER B . n B 1 43 LEU 43 36 36 LEU LEU B . n B 1 44 VAL 44 37 37 VAL VAL B . n B 1 45 ASP 45 38 38 ASP ASP B . n B 1 46 LEU 46 39 39 LEU LEU B . n B 1 47 PHE 47 40 40 PHE PHE B . n B 1 48 HIS 48 41 41 HIS HIS B . n B 1 49 ASP 49 42 42 ASP ASP B . n B 1 50 THR 50 43 43 THR THR B . n B 1 51 ASN 51 44 44 ASN ASN B . n B 1 52 PHE 52 45 45 PHE PHE B . n B 1 53 VAL 53 46 46 VAL VAL B . n B 1 54 LYS 54 47 47 LYS LYS B . n B 1 55 GLU 55 48 48 GLU GLU B . n B 1 56 LYS 56 49 49 LYS LYS B . n B 1 57 ASP 57 50 50 ASP ASP B . n B 1 58 TRP 58 51 51 TRP TRP B . n B 1 59 GLN 59 52 52 GLN GLN B . n B 1 60 LEU 60 53 53 LEU LEU B . n B 1 61 ARG 61 54 54 ARG ARG B . n B 1 62 ASP 62 55 55 ASP ASP B . n B 1 63 VAL 63 56 56 VAL VAL B . n B 1 64 ILE 64 57 57 ILE ILE B . n B 1 65 PRO 65 58 58 PRO PRO B . n B 1 66 LEU 66 59 59 LEU LEU B . n B 1 67 LEU 67 60 60 LEU LEU B . n B 1 68 GLU 68 61 61 GLU GLU B . n B 1 69 ASP 69 62 62 ASP ASP B . n B 1 70 VAL 70 63 63 VAL VAL B . n B 1 71 THR 71 64 64 THR THR B . n B 1 72 GLN 72 65 65 GLN GLN B . n B 1 73 THR 73 66 66 THR THR B . n B 1 74 LEU 74 67 67 LEU LEU B . n B 1 75 SER 75 68 68 SER SER B . n B 1 76 GLY 76 69 69 GLY GLY B . n B 1 77 GLN 77 70 70 GLN GLN B . n B 1 78 GLU 78 71 71 GLU GLU B . n B 1 79 ARG 79 72 72 ARG ARG B . n B 1 80 GLU 80 73 73 GLU GLU B . n B 1 81 ALA 81 74 74 ALA ALA B . n B 1 82 PHE 82 75 75 PHE PHE B . n B 1 83 GLU 83 76 76 GLU GLU B . n B 1 84 ARG 84 77 77 ARG ARG B . n B 1 85 THR 85 78 78 THR THR B . n B 1 86 TRP 86 79 79 TRP TRP B . n B 1 87 TRP 87 80 80 TRP TRP B . n B 1 88 ALA 88 81 81 ALA ALA B . n B 1 89 ILE 89 82 82 ILE ILE B . n B 1 90 SER 90 83 83 SER SER B . n B 1 91 ALA 91 84 84 ALA ALA B . n B 1 92 VAL 92 85 85 VAL VAL B . n B 1 93 LYS 93 86 86 LYS LYS B . n B 1 94 MSE 94 87 87 MSE MSE B . n B 1 95 GLY 95 88 88 GLY GLY B . n B 1 96 LEU 96 89 89 LEU LEU B . n B 1 97 GLN 97 90 90 GLN GLN B . n B 1 98 ILE 98 91 91 ILE ILE B . n B 1 99 ASN 99 92 92 ASN ASN B . n B 1 100 ASN 100 93 93 ASN ASN B . n B 1 101 VAL 101 94 94 VAL VAL B . n B 1 102 VAL 102 95 95 VAL VAL B . n B 1 103 ASP 103 96 96 ASP ASP B . n B 1 104 GLY 104 97 97 GLY GLY B . n B 1 105 LYS 105 98 98 LYS LYS B . n B 1 106 ALA 106 99 99 ALA ALA B . n B 1 107 SER 107 100 100 SER SER B . n B 1 108 PHE 108 101 101 PHE PHE B . n B 1 109 GLN 109 102 102 GLN GLN B . n B 1 110 LEU 110 103 103 LEU LEU B . n B 1 111 LEU 111 104 104 LEU LEU B . n B 1 112 ARG 112 105 105 ARG ARG B . n B 1 113 ALA 113 106 106 ALA ALA B . n B 1 114 LYS 114 107 107 LYS LYS B . n B 1 115 TYR 115 108 108 TYR TYR B . n B 1 116 GLU 116 109 109 GLU GLU B . n B 1 117 LYS 117 110 ? ? ? B . n B 1 118 LYS 118 111 ? ? ? B . n B 1 119 THR 119 112 ? ? ? B . n B 1 120 ALA 120 113 ? ? ? B . n B 1 121 ASN 121 114 ? ? ? B . n B 1 122 LYS 122 115 ? ? ? B . n B 1 123 LYS 123 116 ? ? ? B . n B 1 124 GLN 124 117 ? ? ? B . n B 1 125 SER 125 118 ? ? ? B . n B 1 126 GLU 126 119 ? ? ? B . n B 1 127 PRO 127 120 ? ? ? B . n B 1 128 SER 128 121 ? ? ? B . n B 1 129 GLU 129 122 ? ? ? B . n B 1 130 GLU 130 123 ? ? ? B . n B 1 131 TYR 131 124 ? ? ? B . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 2 A MSE -5 ? MET SELENOMETHIONINE 2 A MSE 8 A MSE 1 ? MET SELENOMETHIONINE 3 A MSE 94 A MSE 87 ? MET SELENOMETHIONINE 4 B MSE 2 B MSE -5 ? MET SELENOMETHIONINE 5 B MSE 8 B MSE 1 ? MET SELENOMETHIONINE 6 B MSE 94 B MSE 87 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 software_defined_assembly PQS monomeric 1 2 software_defined_assembly PQS monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A 2 1 B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2001-11-23 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2019-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Experimental preparation' 6 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' exptl_crystal_grow 2 4 'Structure model' pdbx_database_proc 3 4 'Structure model' pdbx_database_status 4 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_exptl_crystal_grow.temp' 2 4 'Structure model' '_pdbx_database_status.recvd_author_approval' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.0 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SHARP phasing . ? 4 # _pdbx_database_remark.id 650 _pdbx_database_remark.text ; HELIX DETERMINATION METHOD: AUTHOR PROVIDED. ; # _pdbx_entry_details.entry_id 1HEK _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'RESIDUES -6 TO 0 ARE A CLONING ARTIFACT' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OD1 B ASP 38 ? ? OG1 B THR 43 ? ? 2.09 2 1 O A TRP 79 ? ? N A ALA 81 ? ? 2.13 3 1 O A GLY 97 ? ? OG A SER 100 ? ? 2.18 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MSE A -5 ? ? -121.28 -168.05 2 1 ASP A -3 ? ? -78.43 35.32 3 1 ILE A -2 ? ? 18.48 -73.63 4 1 SER A 0 ? ? -141.50 -8.31 5 1 MSE A 1 ? ? 30.06 11.80 6 1 PRO A 4 ? ? -44.41 -72.35 7 1 LEU A 11 ? ? -49.61 -71.69 8 1 LYS A 12 ? ? -32.77 -73.95 9 1 THR A 18 ? ? -54.58 -173.36 10 1 GLN A 20 ? ? -31.56 -116.53 11 1 SER A 22 ? ? -174.48 44.71 12 1 LYS A 24 ? ? -61.54 -171.05 13 1 CYS A 30 ? ? -66.92 -71.81 14 1 ASN A 31 ? ? -39.51 -27.01 15 1 THR A 43 ? ? -84.61 -159.59 16 1 ASN A 44 ? ? -155.06 34.78 17 1 TRP A 51 ? ? 173.96 155.23 18 1 LEU A 60 ? ? -36.70 -70.12 19 1 GLU A 61 ? ? -24.06 -49.97 20 1 GLN A 70 ? ? -34.37 -30.01 21 1 GLU A 71 ? ? -37.24 -37.27 22 1 ARG A 72 ? ? -62.49 -74.30 23 1 TRP A 80 ? ? -20.51 -49.53 24 1 ALA A 81 ? ? -68.08 -84.70 25 1 MSE A 87 ? ? -84.36 38.31 26 1 ASN A 93 ? ? 172.94 155.93 27 1 VAL A 94 ? ? -60.67 -97.33 28 1 VAL A 95 ? ? -13.54 -56.83 29 1 ASP A 96 ? ? -62.09 98.39 30 1 ALA A 99 ? ? -52.46 -78.35 31 1 SER A 100 ? ? -24.90 -44.94 32 1 PHE A 101 ? ? -58.30 -73.86 33 1 GLN A 102 ? ? -26.80 -53.65 34 1 ARG A 105 ? ? -75.95 -70.67 35 1 MSE B -5 ? ? -87.65 -130.64 36 1 ASP B -3 ? ? 161.15 122.89 37 1 PRO B 4 ? ? -49.37 -83.67 38 1 GLU B 15 ? ? -46.31 -85.90 39 1 LYS B 16 ? ? -20.66 -20.81 40 1 VAL B 19 ? ? -113.15 -79.94 41 1 GLN B 20 ? ? -84.25 -83.83 42 1 LEU B 34 ? ? -68.16 5.17 43 1 LEU B 39 ? ? -65.04 -72.07 44 1 PHE B 40 ? ? -48.54 -78.63 45 1 ASP B 42 ? ? 52.90 101.72 46 1 THR B 43 ? ? -156.17 -150.61 47 1 ASN B 44 ? ? -143.16 -33.26 48 1 PHE B 45 ? ? 9.20 -79.60 49 1 LEU B 60 ? ? -22.85 -36.41 50 1 LEU B 67 ? ? -53.51 170.60 51 1 GLU B 71 ? ? -60.27 -70.73 52 1 GLU B 73 ? ? -24.29 -79.36 53 1 TRP B 80 ? ? -38.88 -32.88 54 1 ALA B 84 ? ? -55.45 -76.78 55 1 MSE B 87 ? ? -74.03 26.49 56 1 VAL B 94 ? ? -18.29 -51.99 57 1 ASP B 96 ? ? -26.66 -50.06 58 1 ALA B 99 ? ? -41.16 -81.35 59 1 SER B 100 ? ? -24.98 -42.55 60 1 PHE B 101 ? ? -71.58 -84.42 61 1 GLN B 102 ? ? -27.98 -40.03 62 1 LEU B 103 ? ? -60.00 -81.79 63 1 LEU B 104 ? ? -35.16 -29.83 64 1 TYR B 108 ? ? -100.12 67.75 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LYS 110 ? A LYS 117 2 1 Y 1 A LYS 111 ? A LYS 118 3 1 Y 1 A THR 112 ? A THR 119 4 1 Y 1 A ALA 113 ? A ALA 120 5 1 Y 1 A ASN 114 ? A ASN 121 6 1 Y 1 A LYS 115 ? A LYS 122 7 1 Y 1 A LYS 116 ? A LYS 123 8 1 Y 1 A GLN 117 ? A GLN 124 9 1 Y 1 A SER 118 ? A SER 125 10 1 Y 1 A GLU 119 ? A GLU 126 11 1 Y 1 A PRO 120 ? A PRO 127 12 1 Y 1 A SER 121 ? A SER 128 13 1 Y 1 A GLU 122 ? A GLU 129 14 1 Y 1 A GLU 123 ? A GLU 130 15 1 Y 1 A TYR 124 ? A TYR 131 16 1 Y 1 B LYS 110 ? B LYS 117 17 1 Y 1 B LYS 111 ? B LYS 118 18 1 Y 1 B THR 112 ? B THR 119 19 1 Y 1 B ALA 113 ? B ALA 120 20 1 Y 1 B ASN 114 ? B ASN 121 21 1 Y 1 B LYS 115 ? B LYS 122 22 1 Y 1 B LYS 116 ? B LYS 123 23 1 Y 1 B GLN 117 ? B GLN 124 24 1 Y 1 B SER 118 ? B SER 125 25 1 Y 1 B GLU 119 ? B GLU 126 26 1 Y 1 B PRO 120 ? B PRO 127 27 1 Y 1 B SER 121 ? B SER 128 28 1 Y 1 B GLU 122 ? B GLU 129 29 1 Y 1 B GLU 123 ? B GLU 130 30 1 Y 1 B TYR 124 ? B TYR 131 #