data_1IEY # _entry.id 1IEY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1IEY pdb_00001iey 10.2210/pdb1iey/pdb RCSB RCSB013220 ? ? WWPDB D_1000013220 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1IEK _pdbx_database_related.details 'diaestereoisomer S' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1IEY _pdbx_database_status.recvd_initial_deposition_date 2001-04-11 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Soliva, R.' 1 'Monaco, V.' 2 'Gomez-Pinto, I.' 3 'Meeuwenoord, N.J.' 4 'van der Marel, G.A.' 5 'van Boom, J.H.' 6 'Gonzalez, C.' 7 'Orozco, M.' 8 # _citation.id primary _citation.title 'Solution structure of a DNA duplex with a chiral alkyl phosphonate moiety.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 29 _citation.page_first 2973 _citation.page_last 2985 _citation.year 2001 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11452022 _citation.pdbx_database_id_DOI 10.1093/nar/29.14.2973 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Soliva, R.' 1 ? primary 'Monaco, V.' 2 ? primary 'Gomez-Pinto, I.' 3 ? primary 'Meeuwenoord, N.J.' 4 ? primary 'Marel, G.A.' 5 ? primary 'Boom, J.H.' 6 ? primary 'Gonzalez, C.' 7 ? primary 'Orozco, M.' 8 ? # _cell.entry_id 1IEY _cell.length_a ? _cell.length_b ? _cell.length_c ? _cell.angle_alpha ? _cell.angle_beta ? _cell.angle_gamma ? _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(P*CP*CP*AP*CP*CP*(OCT)GP*GP*AP*AP*C)-3'" 2998.983 1 ? ? ? ? 2 polymer syn "5'-D(*GP*TP*TP*CP*CP*GP*GP*TP*GP*G)-3'" 3092.013 1 ? ? ? ? 3 non-polymer syn N-OCTANE 114.229 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DC)(DA)(DC)(DC)(DG)(DG)(DA)(DA)(DC)' CCACCGGAAC A ? 2 polydeoxyribonucleotide no no '(DG)(DT)(DT)(DC)(DC)(DG)(DG)(DT)(DG)(DG)' GTTCCGGTGG B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DA n 1 4 DC n 1 5 DC n 1 6 DG n 1 7 DG n 1 8 DA n 1 9 DA n 1 10 DC n 2 1 DG n 2 2 DT n 2 3 DT n 2 4 DC n 2 5 DC n 2 6 DG n 2 7 DG n 2 8 DT n 2 9 DG n 2 10 DG n # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 1IEY 1IEY ? ? ? 2 2 PDB 1IEY 1IEY ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1IEY A 1 ? 10 ? 1IEY 1 ? 10 ? 1 10 2 2 1IEY B 1 ? 10 ? 1IEY 11 ? 20 ? 11 20 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 OCT non-polymer . N-OCTANE ? 'C8 H18' 114.229 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 '2D NOESY' 2 2 2 '2D NOESY' 3 2 2 DQF-COSY # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 278 1 7.0 ? atm K 2 298 1 7.0 ? atm K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '2mM duplex; 10mM phosphate, 100mM NaCl' '90% H20, 10% D2O' 2 '2mM duplex; 10mM phosphate, 100mM NaCl' D2O # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AMX _pdbx_nmr_spectrometer.field_strength 600 # _pdbx_nmr_refine.entry_id 1IEY _pdbx_nmr_refine.method 'simulated, annealing molecular dynamics, matrix relaxation' _pdbx_nmr_refine.details ;the structures are based on a total of 280 NOE-derived distance constraints obtained from a complete relaxation matrix refinement. The structures were calculated by using restrained molecular dynamics with explicit solvent, and applying the particle mesh Ewald method. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1IEY _pdbx_nmr_ensemble.conformers_calculated_total_number 10 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'all calculated structures submitted' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal MARDIGRAS 5.2 'iterative matrix relaxation' 'James, T.L.' 1 Amber 5.0 refinement 'Kollman, P.A.' 2 XwinNMR 1.3 collection Bruker 3 # _exptl.entry_id 1IEY _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1IEY _struct.title 'SOLUTION STRUCTURE OF THE DNA DUPLEX D(CCACCGGAAC).(GTTCCGGTGG) WITH A CHIRAL ALKYL-PHOSPHONATE MOIETY (DIAESTEREOISOMER R)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1IEY _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'double helix, dna bending, modified oligonucleotide, charge neutralization, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A DG 6 P ? ? ? 1_555 C OCT . C1 ? ? A DG 6 A OCT 11 1_555 ? ? ? ? ? ? ? 1.857 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 3 B DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 3 B DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 7 N1 ? ? A DC 4 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 7 O6 ? ? A DC 4 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 7 N2 ? ? A DC 4 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 5 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 5 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 5 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 6 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 6 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 6 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 4 N3 ? ? A DG 7 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 4 O2 ? ? A DG 7 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 4 N4 ? ? A DG 7 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 3 N3 ? ? A DA 8 B DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 3 O4 ? ? A DA 8 B DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B DT 2 N3 ? ? A DA 9 B DT 12 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog24 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 10 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 10 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 10 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id OCT _struct_site.pdbx_auth_seq_id 11 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 2 _struct_site.details 'BINDING SITE FOR RESIDUE OCT A 11' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 DC A 5 ? DC A 5 . ? 1_555 ? 2 AC1 2 DG A 6 ? DG A 6 . ? 1_555 ? # _database_PDB_matrix.entry_id 1IEY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1IEY _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DA 3 3 3 DA A A . n A 1 4 DC 4 4 4 DC C A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DG 6 6 6 DG +G A . n A 1 7 DG 7 7 7 DG G A . n A 1 8 DA 8 8 8 DA A A . n A 1 9 DA 9 9 9 DA A A . n A 1 10 DC 10 10 10 DC C A . n B 2 1 DG 1 11 11 DG G B . n B 2 2 DT 2 12 12 DT T B . n B 2 3 DT 3 13 13 DT T B . n B 2 4 DC 4 14 14 DC C B . n B 2 5 DC 5 15 15 DC C B . n B 2 6 DG 6 16 16 DG G B . n B 2 7 DG 7 17 17 DG G B . n B 2 8 DT 8 18 18 DT T B . n B 2 9 DG 9 19 19 DG G B . n B 2 10 DG 10 20 20 DG G B . n # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id OCT _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 11 _pdbx_nonpoly_scheme.auth_seq_num 6 _pdbx_nonpoly_scheme.pdb_mon_id OCT _pdbx_nonpoly_scheme.auth_mon_id +G _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2001-07-25 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 P _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 DC _pdbx_validate_rmsd_bond.auth_seq_id_1 1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 "O5'" _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 DC _pdbx_validate_rmsd_bond.auth_seq_id_2 1 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 12.266 _pdbx_validate_rmsd_bond.bond_target_value 1.593 _pdbx_validate_rmsd_bond.bond_deviation 10.673 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.010 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 P A DC 1 ? ? "O5'" A DC 1 ? ? "C5'" A DC 1 ? ? 72.37 120.90 -48.53 1.60 N 2 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.63 108.30 4.33 0.30 N 3 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 110.70 108.30 2.40 0.30 N 4 1 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 112.18 108.30 3.88 0.30 N 5 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 111.22 108.30 2.92 0.30 N 6 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 114.30 108.30 6.00 0.30 N 7 1 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 110.90 108.30 2.60 0.30 N 8 1 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 112.18 108.30 3.88 0.30 N 9 1 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 110.72 108.30 2.42 0.30 N 10 1 "O4'" B DT 12 ? ? "C1'" B DT 12 ? ? N1 B DT 12 ? ? 111.06 108.30 2.76 0.30 N 11 1 C6 B DT 12 ? ? C5 B DT 12 ? ? C7 B DT 12 ? ? 118.25 122.90 -4.65 0.60 N 12 1 "O4'" B DT 13 ? ? "C1'" B DT 13 ? ? N1 B DT 13 ? ? 111.45 108.30 3.15 0.30 N 13 1 C6 B DT 13 ? ? C5 B DT 13 ? ? C7 B DT 13 ? ? 118.92 122.90 -3.98 0.60 N 14 1 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 111.84 108.30 3.54 0.30 N 15 1 "O4'" B DT 18 ? ? "C1'" B DT 18 ? ? N1 B DT 18 ? ? 111.00 108.30 2.70 0.30 N 16 1 C6 B DT 18 ? ? C5 B DT 18 ? ? C7 B DT 18 ? ? 118.90 122.90 -4.00 0.60 N 17 1 "O4'" B DG 19 ? ? "C1'" B DG 19 ? ? N9 B DG 19 ? ? 111.30 108.30 3.00 0.30 N 18 2 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.55 108.30 4.25 0.30 N 19 2 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 110.55 108.30 2.25 0.30 N 20 2 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 110.81 108.30 2.51 0.30 N 21 2 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 110.92 108.30 2.62 0.30 N 22 2 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 114.11 108.30 5.81 0.30 N 23 2 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 110.72 108.30 2.42 0.30 N 24 2 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 112.51 108.30 4.21 0.30 N 25 2 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 112.45 108.30 4.15 0.30 N 26 2 C6 B DT 12 ? ? C5 B DT 12 ? ? C7 B DT 12 ? ? 118.35 122.90 -4.55 0.60 N 27 2 "O4'" B DT 13 ? ? "C1'" B DT 13 ? ? N1 B DT 13 ? ? 111.43 108.30 3.13 0.30 N 28 2 C6 B DT 13 ? ? C5 B DT 13 ? ? C7 B DT 13 ? ? 118.63 122.90 -4.27 0.60 N 29 2 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 111.80 108.30 3.50 0.30 N 30 2 "O4'" B DT 18 ? ? "C1'" B DT 18 ? ? N1 B DT 18 ? ? 111.44 108.30 3.14 0.30 N 31 2 C6 B DT 18 ? ? C5 B DT 18 ? ? C7 B DT 18 ? ? 118.36 122.90 -4.54 0.60 N 32 2 "O4'" B DG 19 ? ? "C1'" B DG 19 ? ? N9 B DG 19 ? ? 110.99 108.30 2.69 0.30 N 33 2 "O4'" B DG 20 ? ? "C1'" B DG 20 ? ? N9 B DG 20 ? ? 110.15 108.30 1.85 0.30 N 34 3 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.57 108.30 4.27 0.30 N 35 3 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 110.87 108.30 2.57 0.30 N 36 3 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 110.74 108.30 2.44 0.30 N 37 3 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 114.36 108.30 6.06 0.30 N 38 3 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 110.88 108.30 2.58 0.30 N 39 3 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 112.56 108.30 4.26 0.30 N 40 3 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 112.42 108.30 4.12 0.30 N 41 3 C6 B DT 12 ? ? C5 B DT 12 ? ? C7 B DT 12 ? ? 118.29 122.90 -4.61 0.60 N 42 3 "O4'" B DT 13 ? ? "C1'" B DT 13 ? ? N1 B DT 13 ? ? 111.02 108.30 2.72 0.30 N 43 3 C6 B DT 13 ? ? C5 B DT 13 ? ? C7 B DT 13 ? ? 118.77 122.90 -4.13 0.60 N 44 3 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 110.27 108.30 1.97 0.30 N 45 3 "O4'" B DG 17 ? ? "C1'" B DG 17 ? ? N9 B DG 17 ? ? 110.14 108.30 1.84 0.30 N 46 3 "O4'" B DT 18 ? ? "C1'" B DT 18 ? ? N1 B DT 18 ? ? 111.30 108.30 3.00 0.30 N 47 3 C6 B DT 18 ? ? C5 B DT 18 ? ? C7 B DT 18 ? ? 118.83 122.90 -4.07 0.60 N 48 3 "O4'" B DG 19 ? ? "C1'" B DG 19 ? ? N9 B DG 19 ? ? 111.58 108.30 3.28 0.30 N 49 4 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.41 108.30 3.11 0.30 N 50 4 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 111.06 108.30 2.76 0.30 N 51 4 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 112.11 108.30 3.81 0.30 N 52 4 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 111.23 108.30 2.93 0.30 N 53 4 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 114.15 108.30 5.85 0.30 N 54 4 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 111.14 108.30 2.84 0.30 N 55 4 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 112.42 108.30 4.12 0.30 N 56 4 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 112.64 108.30 4.34 0.30 N 57 4 C6 B DT 12 ? ? C5 B DT 12 ? ? C7 B DT 12 ? ? 118.20 122.90 -4.70 0.60 N 58 4 "O4'" B DT 13 ? ? "C1'" B DT 13 ? ? N1 B DT 13 ? ? 111.75 108.30 3.45 0.30 N 59 4 C6 B DT 13 ? ? C5 B DT 13 ? ? C7 B DT 13 ? ? 118.29 122.90 -4.61 0.60 N 60 4 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 111.65 108.30 3.35 0.30 N 61 4 "O4'" B DT 18 ? ? "C1'" B DT 18 ? ? N1 B DT 18 ? ? 112.02 108.30 3.72 0.30 N 62 4 C6 B DT 18 ? ? C5 B DT 18 ? ? C7 B DT 18 ? ? 118.91 122.90 -3.99 0.60 N 63 4 "C3'" B DT 18 ? ? "O3'" B DT 18 ? ? P B DG 19 ? ? 127.77 119.70 8.07 1.20 Y 64 5 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.82 108.30 3.52 0.30 N 65 5 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 111.03 108.30 2.73 0.30 N 66 5 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 112.00 108.30 3.70 0.30 N 67 5 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 111.21 108.30 2.91 0.30 N 68 5 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 114.11 108.30 5.81 0.30 N 69 5 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 110.78 108.30 2.48 0.30 N 70 5 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 112.13 108.30 3.83 0.30 N 71 5 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 112.62 108.30 4.32 0.30 N 72 5 C6 B DT 12 ? ? C5 B DT 12 ? ? C7 B DT 12 ? ? 118.25 122.90 -4.65 0.60 N 73 5 "O4'" B DT 13 ? ? "C1'" B DT 13 ? ? N1 B DT 13 ? ? 111.57 108.30 3.27 0.30 N 74 5 C6 B DT 13 ? ? C5 B DT 13 ? ? C7 B DT 13 ? ? 118.97 122.90 -3.93 0.60 N 75 5 "C3'" B DT 13 ? ? "O3'" B DT 13 ? ? P B DC 14 ? ? 127.69 119.70 7.99 1.20 Y 76 5 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 111.60 108.30 3.30 0.30 N 77 5 "O4'" B DT 18 ? ? "C1'" B DT 18 ? ? N1 B DT 18 ? ? 111.00 108.30 2.70 0.30 N 78 5 C6 B DT 18 ? ? C5 B DT 18 ? ? C7 B DT 18 ? ? 118.74 122.90 -4.16 0.60 N 79 5 "O4'" B DG 19 ? ? "C1'" B DG 19 ? ? N9 B DG 19 ? ? 111.28 108.30 2.98 0.30 N 80 5 "O4'" B DG 20 ? ? "C1'" B DG 20 ? ? N9 B DG 20 ? ? 110.26 108.30 1.96 0.30 N 81 6 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.37 108.30 4.07 0.30 N 82 6 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 110.58 108.30 2.28 0.30 N 83 6 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 110.16 108.30 1.86 0.30 N 84 6 "O4'" A DC 5 ? ? "C4'" A DC 5 ? ? "C3'" A DC 5 ? ? 109.65 106.00 3.65 0.60 N 85 6 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 112.59 108.30 4.29 0.30 N 86 6 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 110.54 108.30 2.24 0.30 N 87 6 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 112.05 108.30 3.75 0.30 N 88 6 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 112.94 108.30 4.64 0.30 N 89 6 C6 B DT 12 ? ? C5 B DT 12 ? ? C7 B DT 12 ? ? 118.78 122.90 -4.12 0.60 N 90 6 "O4'" B DT 13 ? ? "C1'" B DT 13 ? ? N1 B DT 13 ? ? 110.83 108.30 2.53 0.30 N 91 6 C6 B DT 13 ? ? C5 B DT 13 ? ? C7 B DT 13 ? ? 118.76 122.90 -4.14 0.60 N 92 6 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 110.48 108.30 2.18 0.30 N 93 6 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 110.16 108.30 1.86 0.30 N 94 6 "O4'" B DT 18 ? ? "C1'" B DT 18 ? ? N1 B DT 18 ? ? 111.50 108.30 3.20 0.30 N 95 6 C6 B DT 18 ? ? C5 B DT 18 ? ? C7 B DT 18 ? ? 118.87 122.90 -4.03 0.60 N 96 6 "O4'" B DG 19 ? ? "C1'" B DG 19 ? ? N9 B DG 19 ? ? 111.33 108.30 3.03 0.30 N 97 7 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.39 108.30 4.09 0.30 N 98 7 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 110.96 108.30 2.66 0.30 N 99 7 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 111.56 108.30 3.26 0.30 N 100 7 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 112.06 108.30 3.76 0.30 N 101 7 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 110.46 108.30 2.16 0.30 N 102 7 "O4'" A DA 8 ? ? "C1'" A DA 8 ? ? N9 A DA 8 ? ? 110.23 108.30 1.93 0.30 N 103 7 "C3'" A DA 8 ? ? "O3'" A DA 8 ? ? P A DA 9 ? ? 127.08 119.70 7.38 1.20 Y 104 7 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 112.12 108.30 3.82 0.30 N 105 7 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 112.60 108.30 4.30 0.30 N 106 7 C6 B DT 12 ? ? C5 B DT 12 ? ? C7 B DT 12 ? ? 118.21 122.90 -4.69 0.60 N 107 7 "O4'" B DT 13 ? ? "C1'" B DT 13 ? ? N1 B DT 13 ? ? 111.17 108.30 2.87 0.30 N 108 7 C6 B DT 13 ? ? C5 B DT 13 ? ? C7 B DT 13 ? ? 118.18 122.90 -4.72 0.60 N 109 7 "C3'" B DC 14 ? ? "O3'" B DC 14 ? ? P B DC 15 ? ? 127.11 119.70 7.41 1.20 Y 110 7 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 111.02 108.30 2.72 0.30 N 111 7 "O4'" B DT 18 ? ? "C1'" B DT 18 ? ? N1 B DT 18 ? ? 111.15 108.30 2.85 0.30 N 112 7 C6 B DT 18 ? ? C5 B DT 18 ? ? C7 B DT 18 ? ? 118.81 122.90 -4.09 0.60 N 113 7 "O4'" B DG 19 ? ? "C1'" B DG 19 ? ? N9 B DG 19 ? ? 111.55 108.30 3.25 0.30 N 114 7 "O4'" B DG 20 ? ? "C1'" B DG 20 ? ? N9 B DG 20 ? ? 110.18 108.30 1.88 0.30 N 115 8 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.51 108.30 4.21 0.30 N 116 8 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 110.90 108.30 2.60 0.30 N 117 8 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 111.29 108.30 2.99 0.30 N 118 8 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 112.01 108.30 3.71 0.30 N 119 8 "O4'" A DG 6 ? ? "C4'" A DG 6 ? ? "C3'" A DG 6 ? ? 110.06 106.00 4.06 0.60 N 120 8 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 110.68 108.30 2.38 0.30 N 121 8 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 112.48 108.30 4.18 0.30 N 122 8 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 112.43 108.30 4.13 0.30 N 123 8 C6 B DT 12 ? ? C5 B DT 12 ? ? C7 B DT 12 ? ? 118.16 122.90 -4.74 0.60 N 124 8 "O4'" B DT 13 ? ? "C1'" B DT 13 ? ? N1 B DT 13 ? ? 111.01 108.30 2.71 0.30 N 125 8 C6 B DT 13 ? ? C5 B DT 13 ? ? C7 B DT 13 ? ? 118.56 122.90 -4.34 0.60 N 126 8 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 110.75 108.30 2.45 0.30 N 127 8 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 110.57 108.30 2.27 0.30 N 128 8 "O4'" B DT 18 ? ? "C1'" B DT 18 ? ? N1 B DT 18 ? ? 113.10 108.30 4.80 0.30 N 129 8 C6 B DT 18 ? ? C5 B DT 18 ? ? C7 B DT 18 ? ? 118.07 122.90 -4.83 0.60 N 130 8 "O4'" B DG 19 ? ? "C1'" B DG 19 ? ? N9 B DG 19 ? ? 111.67 108.30 3.37 0.30 N 131 8 "O4'" B DG 20 ? ? "C1'" B DG 20 ? ? N9 B DG 20 ? ? 110.20 108.30 1.90 0.30 N 132 9 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.51 108.30 4.21 0.30 N 133 9 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 110.88 108.30 2.58 0.30 N 134 9 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 111.40 108.30 3.10 0.30 N 135 9 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 112.27 108.30 3.97 0.30 N 136 9 "O4'" A DG 6 ? ? "C4'" A DG 6 ? ? "C3'" A DG 6 ? ? 109.75 106.00 3.75 0.60 N 137 9 "O4'" A DA 8 ? ? "C1'" A DA 8 ? ? N9 A DA 8 ? ? 110.28 108.30 1.98 0.30 N 138 9 "C3'" A DA 8 ? ? "O3'" A DA 8 ? ? P A DA 9 ? ? 127.14 119.70 7.44 1.20 Y 139 9 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 112.35 108.30 4.05 0.30 N 140 9 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 112.70 108.30 4.40 0.30 N 141 9 C6 B DT 12 ? ? C5 B DT 12 ? ? C7 B DT 12 ? ? 118.15 122.90 -4.75 0.60 N 142 9 "O4'" B DT 13 ? ? "C1'" B DT 13 ? ? N1 B DT 13 ? ? 111.18 108.30 2.88 0.30 N 143 9 C6 B DT 13 ? ? C5 B DT 13 ? ? C7 B DT 13 ? ? 118.73 122.90 -4.17 0.60 N 144 9 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 112.01 108.30 3.71 0.30 N 145 9 "O4'" B DT 18 ? ? "C1'" B DT 18 ? ? N1 B DT 18 ? ? 111.50 108.30 3.20 0.30 N 146 9 C6 B DT 18 ? ? C5 B DT 18 ? ? C7 B DT 18 ? ? 118.63 122.90 -4.27 0.60 N 147 9 "O4'" B DG 19 ? ? "C1'" B DG 19 ? ? N9 B DG 19 ? ? 111.12 108.30 2.82 0.30 N 148 9 "O4'" B DG 20 ? ? "C1'" B DG 20 ? ? N9 B DG 20 ? ? 110.13 108.30 1.83 0.30 N 149 10 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.20 108.30 3.90 0.30 N 150 10 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 110.87 108.30 2.57 0.30 N 151 10 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 111.54 108.30 3.24 0.30 N 152 10 "O4'" A DC 5 ? ? "C4'" A DC 5 ? ? "C3'" A DC 5 ? ? 109.79 106.00 3.79 0.60 N 153 10 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 112.78 108.30 4.48 0.30 N 154 10 "O4'" A DA 8 ? ? "C1'" A DA 8 ? ? N9 A DA 8 ? ? 110.20 108.30 1.90 0.30 N 155 10 "C3'" A DA 8 ? ? "O3'" A DA 8 ? ? P A DA 9 ? ? 127.11 119.70 7.41 1.20 Y 156 10 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 111.89 108.30 3.59 0.30 N 157 10 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 112.07 108.30 3.77 0.30 N 158 10 C6 B DT 12 ? ? C5 B DT 12 ? ? C7 B DT 12 ? ? 118.50 122.90 -4.40 0.60 N 159 10 "O4'" B DC 14 ? ? "C1'" B DC 14 ? ? N1 B DC 14 ? ? 110.77 108.30 2.47 0.30 N 160 10 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 111.56 108.30 3.26 0.30 N 161 10 "O4'" B DT 18 ? ? "C1'" B DT 18 ? ? N1 B DT 18 ? ? 112.92 108.30 4.62 0.30 N 162 10 C6 B DT 18 ? ? C5 B DT 18 ? ? C7 B DT 18 ? ? 118.50 122.90 -4.40 0.60 N 163 10 "O4'" B DG 19 ? ? "C1'" B DG 19 ? ? N9 B DG 19 ? ? 111.44 108.30 3.14 0.30 N 164 10 "O4'" B DG 20 ? ? "C1'" B DG 20 ? ? N9 B DG 20 ? ? 110.27 108.30 1.97 0.30 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG A 6 ? ? 0.098 'SIDE CHAIN' 2 1 DC A 10 ? ? 0.081 'SIDE CHAIN' 3 1 DG B 11 ? ? 0.104 'SIDE CHAIN' 4 1 DT B 13 ? ? 0.069 'SIDE CHAIN' 5 1 DG B 16 ? ? 0.133 'SIDE CHAIN' 6 1 DG B 19 ? ? 0.059 'SIDE CHAIN' 7 2 DG A 6 ? ? 0.102 'SIDE CHAIN' 8 2 DC A 10 ? ? 0.076 'SIDE CHAIN' 9 2 DG B 11 ? ? 0.077 'SIDE CHAIN' 10 2 DT B 13 ? ? 0.072 'SIDE CHAIN' 11 2 DG B 16 ? ? 0.125 'SIDE CHAIN' 12 2 DG B 19 ? ? 0.062 'SIDE CHAIN' 13 3 DG A 6 ? ? 0.115 'SIDE CHAIN' 14 3 DC A 10 ? ? 0.076 'SIDE CHAIN' 15 3 DG B 11 ? ? 0.073 'SIDE CHAIN' 16 3 DT B 13 ? ? 0.080 'SIDE CHAIN' 17 3 DG B 16 ? ? 0.055 'SIDE CHAIN' 18 3 DG B 19 ? ? 0.074 'SIDE CHAIN' 19 4 DG A 6 ? ? 0.091 'SIDE CHAIN' 20 4 DC A 10 ? ? 0.077 'SIDE CHAIN' 21 4 DT B 13 ? ? 0.068 'SIDE CHAIN' 22 4 DG B 16 ? ? 0.130 'SIDE CHAIN' 23 4 DG B 17 ? ? 0.071 'SIDE CHAIN' 24 5 DG A 6 ? ? 0.097 'SIDE CHAIN' 25 5 DC A 10 ? ? 0.092 'SIDE CHAIN' 26 5 DT B 13 ? ? 0.085 'SIDE CHAIN' 27 5 DG B 16 ? ? 0.119 'SIDE CHAIN' 28 5 DG B 17 ? ? 0.067 'SIDE CHAIN' 29 5 DG B 19 ? ? 0.065 'SIDE CHAIN' 30 6 DA A 9 ? ? 0.066 'SIDE CHAIN' 31 6 DC A 10 ? ? 0.098 'SIDE CHAIN' 32 6 DT B 13 ? ? 0.077 'SIDE CHAIN' 33 6 DG B 16 ? ? 0.057 'SIDE CHAIN' 34 6 DG B 19 ? ? 0.067 'SIDE CHAIN' 35 7 DG A 6 ? ? 0.074 'SIDE CHAIN' 36 7 DC A 10 ? ? 0.092 'SIDE CHAIN' 37 7 DG B 11 ? ? 0.074 'SIDE CHAIN' 38 7 DT B 13 ? ? 0.073 'SIDE CHAIN' 39 7 DG B 16 ? ? 0.083 'SIDE CHAIN' 40 7 DG B 19 ? ? 0.069 'SIDE CHAIN' 41 8 DG A 6 ? ? 0.058 'SIDE CHAIN' 42 8 DC A 10 ? ? 0.076 'SIDE CHAIN' 43 8 DG B 11 ? ? 0.069 'SIDE CHAIN' 44 8 DT B 13 ? ? 0.071 'SIDE CHAIN' 45 8 DG B 16 ? ? 0.053 'SIDE CHAIN' 46 8 DG B 17 ? ? 0.070 'SIDE CHAIN' 47 8 DG B 19 ? ? 0.070 'SIDE CHAIN' 48 9 DG A 6 ? ? 0.057 'SIDE CHAIN' 49 9 DC A 10 ? ? 0.090 'SIDE CHAIN' 50 9 DT B 13 ? ? 0.068 'SIDE CHAIN' 51 9 DG B 16 ? ? 0.117 'SIDE CHAIN' 52 9 DG B 17 ? ? 0.069 'SIDE CHAIN' 53 9 DG B 19 ? ? 0.061 'SIDE CHAIN' 54 10 DC A 10 ? ? 0.099 'SIDE CHAIN' 55 10 DG B 11 ? ? 0.069 'SIDE CHAIN' 56 10 DT B 13 ? ? 0.091 'SIDE CHAIN' 57 10 DC B 14 ? ? 0.086 'SIDE CHAIN' 58 10 DG B 16 ? ? 0.128 'SIDE CHAIN' 59 10 DG B 17 ? ? 0.084 'SIDE CHAIN' 60 10 DG B 19 ? ? 0.064 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1IEY 'double helix' 1IEY 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 10 1_555 -0.392 0.077 -0.317 9.180 -23.031 -2.985 1 A_DC1:DG20_B A 1 ? B 20 ? 19 1 1 A DC 2 1_555 B DG 9 1_555 -0.790 -0.199 -0.695 4.787 -21.888 0.671 2 A_DC2:DG19_B A 2 ? B 19 ? 19 1 1 A DA 3 1_555 B DT 8 1_555 0.192 0.087 -0.199 -10.258 -19.625 2.689 3 A_DA3:DT18_B A 3 ? B 18 ? 20 1 1 A DC 4 1_555 B DG 7 1_555 -0.114 0.050 0.377 -22.116 -12.381 -3.558 4 A_DC4:DG17_B A 4 ? B 17 ? 19 1 1 A DC 5 1_555 B DG 6 1_555 0.109 0.123 -0.044 -12.911 4.370 4.077 5 A_DC5:DG16_B A 5 ? B 16 ? 19 1 1 A DG 6 1_555 B DC 5 1_555 -0.168 0.023 -0.017 6.632 13.064 0.742 6 A_DG6:DC15_B A 6 ? B 15 ? 19 1 1 A DG 7 1_555 B DC 4 1_555 0.243 0.193 0.565 24.705 -1.261 0.618 7 A_DG7:DC14_B A 7 ? B 14 ? 19 1 1 A DA 8 1_555 B DT 3 1_555 0.483 0.003 -0.046 3.694 -24.844 1.223 8 A_DA8:DT13_B A 8 ? B 13 ? 20 1 1 A DA 9 1_555 B DT 2 1_555 -0.373 0.356 0.672 -2.177 -27.685 12.597 9 A_DA9:DT12_B A 9 ? B 12 ? ? 1 1 A DC 10 1_555 B DG 1 1_555 0.908 -0.207 0.225 -22.112 -17.334 -3.043 10 A_DC10:DG11_B A 10 ? B 11 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 10 1_555 A DC 2 1_555 B DG 9 1_555 0.516 1.268 3.353 6.896 -1.565 42.919 1.868 -0.009 3.347 -2.121 -9.348 43.471 1 AA_DC1DC2:DG19DG20_BB A 1 ? B 20 ? A 2 ? B 19 ? 1 A DC 2 1_555 B DG 9 1_555 A DA 3 1_555 B DT 8 1_555 0.044 0.636 3.705 -5.152 19.491 33.444 -1.871 -0.813 3.505 30.656 8.104 38.902 2 AA_DC2DA3:DT18DG19_BB A 2 ? B 19 ? A 3 ? B 18 ? 1 A DA 3 1_555 B DT 8 1_555 A DC 4 1_555 B DG 7 1_555 -0.522 -0.813 3.322 -5.389 3.658 29.723 -2.294 -0.101 3.243 7.025 10.349 30.413 3 AA_DA3DC4:DG17DT18_BB A 3 ? B 18 ? A 4 ? B 17 ? 1 A DC 4 1_555 B DG 7 1_555 A DC 5 1_555 B DG 6 1_555 0.729 -0.014 3.148 1.361 -2.702 42.014 0.250 -0.878 3.164 -3.763 -1.896 42.118 4 AA_DC4DC5:DG16DG17_BB A 4 ? B 17 ? A 5 ? B 16 ? 1 A DC 5 1_555 B DG 6 1_555 A DG 6 1_555 B DC 5 1_555 -0.431 -0.136 2.812 -0.372 11.422 16.012 -5.092 1.111 2.225 35.675 1.162 19.651 5 AA_DC5DG6:DC15DG16_BB A 5 ? B 16 ? A 6 ? B 15 ? 1 A DG 6 1_555 B DC 5 1_555 A DG 7 1_555 B DC 4 1_555 -0.520 0.757 3.115 -0.489 1.387 33.714 1.089 0.820 3.150 2.390 0.843 33.745 6 AA_DG6DG7:DC14DC15_BB A 6 ? B 15 ? A 7 ? B 14 ? 1 A DG 7 1_555 B DC 4 1_555 A DA 8 1_555 B DT 3 1_555 -0.337 0.118 3.777 4.161 10.785 41.400 -1.079 0.939 3.646 14.909 -5.752 42.915 7 AA_DG7DA8:DT13DC14_BB A 7 ? B 14 ? A 8 ? B 13 ? 1 A DA 8 1_555 B DT 3 1_555 A DA 9 1_555 B DT 2 1_555 0.454 -0.190 3.044 -4.662 -1.369 35.335 -0.127 -1.365 2.967 -2.242 7.636 35.657 8 AA_DA8DA9:DT12DT13_BB A 8 ? B 13 ? A 9 ? B 12 ? 1 A DA 9 1_555 B DT 2 1_555 A DC 10 1_555 B DG 1 1_555 -0.552 0.123 3.723 0.722 3.068 38.186 -0.250 0.944 3.711 4.680 -1.101 38.311 9 AA_DA9DC10:DG11DT12_BB A 9 ? B 12 ? A 10 ? B 11 ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name N-OCTANE _pdbx_entity_nonpoly.comp_id OCT #