data_1J5P # _entry.id 1J5P # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1J5P pdb_00001j5p 10.2210/pdb1j5p/pdb RCSB RCSB001644 ? ? WWPDB D_1000001644 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 283500 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 1J5P _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2002-06-27 _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of aspartate dehydrogenase (TM1643) from Thermotoga maritima at 1.9 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 1J5P _cell.length_a 63.2 _cell.length_b 63.2 _cell.length_c 126.2 _cell.angle_alpha 90.0 _cell.angle_beta 90.0 _cell.angle_gamma 90.0 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 # _symmetry.entry_id 1J5P _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 92 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'ASPARTATE DEHYDROGENASE' 28132.586 1 1.4.3.16 ? ? ? 2 non-polymer syn NICOTINAMIDE-ADENINE-DINUCLEOTIDE 663.425 1 ? ? ? ? 3 water nat water 18.015 82 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGSDKIHHHHHHMTVLIIGMGNIGKKLVELGNFEKIYAYDRISKDIPGVVRLDEFQVPSDVSTVVECASPEAVKEYSLQI LKNPVNYIIISTSAFADEVFRERFFSELKNSPARVFFPSGAIGGLDVLSSIKDFVKNVRIETIKPPKSLGLDLKGKTVVF EGSVEEASKLFPRNINVASTIGLIVGFEKVKVTIVADPAMDHNIHIVRISSAIGNYEFKIENIPSPENPKTSMLTVYSIL RTLRNLESKIIFG ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSDKIHHHHHHMTVLIIGMGNIGKKLVELGNFEKIYAYDRISKDIPGVVRLDEFQVPSDVSTVVECASPEAVKEYSLQI LKNPVNYIIISTSAFADEVFRERFFSELKNSPARVFFPSGAIGGLDVLSSIKDFVKNVRIETIKPPKSLGLDLKGKTVVF EGSVEEASKLFPRNINVASTIGLIVGFEKVKVTIVADPAMDHNIHIVRISSAIGNYEFKIENIPSPENPKTSMLTVYSIL RTLRNLESKIIFG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 283500 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 ASP n 1 5 LYS n 1 6 ILE n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 HIS n 1 12 HIS n 1 13 MET n 1 14 THR n 1 15 VAL n 1 16 LEU n 1 17 ILE n 1 18 ILE n 1 19 GLY n 1 20 MET n 1 21 GLY n 1 22 ASN n 1 23 ILE n 1 24 GLY n 1 25 LYS n 1 26 LYS n 1 27 LEU n 1 28 VAL n 1 29 GLU n 1 30 LEU n 1 31 GLY n 1 32 ASN n 1 33 PHE n 1 34 GLU n 1 35 LYS n 1 36 ILE n 1 37 TYR n 1 38 ALA n 1 39 TYR n 1 40 ASP n 1 41 ARG n 1 42 ILE n 1 43 SER n 1 44 LYS n 1 45 ASP n 1 46 ILE n 1 47 PRO n 1 48 GLY n 1 49 VAL n 1 50 VAL n 1 51 ARG n 1 52 LEU n 1 53 ASP n 1 54 GLU n 1 55 PHE n 1 56 GLN n 1 57 VAL n 1 58 PRO n 1 59 SER n 1 60 ASP n 1 61 VAL n 1 62 SER n 1 63 THR n 1 64 VAL n 1 65 VAL n 1 66 GLU n 1 67 CYS n 1 68 ALA n 1 69 SER n 1 70 PRO n 1 71 GLU n 1 72 ALA n 1 73 VAL n 1 74 LYS n 1 75 GLU n 1 76 TYR n 1 77 SER n 1 78 LEU n 1 79 GLN n 1 80 ILE n 1 81 LEU n 1 82 LYS n 1 83 ASN n 1 84 PRO n 1 85 VAL n 1 86 ASN n 1 87 TYR n 1 88 ILE n 1 89 ILE n 1 90 ILE n 1 91 SER n 1 92 THR n 1 93 SER n 1 94 ALA n 1 95 PHE n 1 96 ALA n 1 97 ASP n 1 98 GLU n 1 99 VAL n 1 100 PHE n 1 101 ARG n 1 102 GLU n 1 103 ARG n 1 104 PHE n 1 105 PHE n 1 106 SER n 1 107 GLU n 1 108 LEU n 1 109 LYS n 1 110 ASN n 1 111 SER n 1 112 PRO n 1 113 ALA n 1 114 ARG n 1 115 VAL n 1 116 PHE n 1 117 PHE n 1 118 PRO n 1 119 SER n 1 120 GLY n 1 121 ALA n 1 122 ILE n 1 123 GLY n 1 124 GLY n 1 125 LEU n 1 126 ASP n 1 127 VAL n 1 128 LEU n 1 129 SER n 1 130 SER n 1 131 ILE n 1 132 LYS n 1 133 ASP n 1 134 PHE n 1 135 VAL n 1 136 LYS n 1 137 ASN n 1 138 VAL n 1 139 ARG n 1 140 ILE n 1 141 GLU n 1 142 THR n 1 143 ILE n 1 144 LYS n 1 145 PRO n 1 146 PRO n 1 147 LYS n 1 148 SER n 1 149 LEU n 1 150 GLY n 1 151 LEU n 1 152 ASP n 1 153 LEU n 1 154 LYS n 1 155 GLY n 1 156 LYS n 1 157 THR n 1 158 VAL n 1 159 VAL n 1 160 PHE n 1 161 GLU n 1 162 GLY n 1 163 SER n 1 164 VAL n 1 165 GLU n 1 166 GLU n 1 167 ALA n 1 168 SER n 1 169 LYS n 1 170 LEU n 1 171 PHE n 1 172 PRO n 1 173 ARG n 1 174 ASN n 1 175 ILE n 1 176 ASN n 1 177 VAL n 1 178 ALA n 1 179 SER n 1 180 THR n 1 181 ILE n 1 182 GLY n 1 183 LEU n 1 184 ILE n 1 185 VAL n 1 186 GLY n 1 187 PHE n 1 188 GLU n 1 189 LYS n 1 190 VAL n 1 191 LYS n 1 192 VAL n 1 193 THR n 1 194 ILE n 1 195 VAL n 1 196 ALA n 1 197 ASP n 1 198 PRO n 1 199 ALA n 1 200 MET n 1 201 ASP n 1 202 HIS n 1 203 ASN n 1 204 ILE n 1 205 HIS n 1 206 ILE n 1 207 VAL n 1 208 ARG n 1 209 ILE n 1 210 SER n 1 211 SER n 1 212 ALA n 1 213 ILE n 1 214 GLY n 1 215 ASN n 1 216 TYR n 1 217 GLU n 1 218 PHE n 1 219 LYS n 1 220 ILE n 1 221 GLU n 1 222 ASN n 1 223 ILE n 1 224 PRO n 1 225 SER n 1 226 PRO n 1 227 GLU n 1 228 ASN n 1 229 PRO n 1 230 LYS n 1 231 THR n 1 232 SER n 1 233 MET n 1 234 LEU n 1 235 THR n 1 236 VAL n 1 237 TYR n 1 238 SER n 1 239 ILE n 1 240 LEU n 1 241 ARG n 1 242 THR n 1 243 LEU n 1 244 ARG n 1 245 ASN n 1 246 LEU n 1 247 GLU n 1 248 SER n 1 249 LYS n 1 250 ILE n 1 251 ILE n 1 252 PHE n 1 253 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Thermotoga _entity_src_gen.pdbx_gene_src_gene TM1643 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermotoga maritima' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2336 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_code Q9X1X6_THEMA _struct_ref.db_name UNP _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession Q9X1X6 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MTVLIIGMGNIGKKLVELGNFEKIYAYDRISKDIPGVVRLDEFQVPSDVSTVVECASPEAVKEYSLQILKNPVNYIIIST SAFADEVFRERFFSELKNSPARVFFPSGAIGGLDVLSSIKDFVKNVRIETIKPPKSLGLDLKGKTVVFEGSVEEASKLFP RNINVASTIGLIVGFEKVKVTIVADPAMDHNIHIVRISSAIGNYEFKIENIPSPENPKTSMLTVYSILRTLRNLESKIIF G ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1J5P _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 13 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 253 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9X1X6 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 241 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 241 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1J5P MET A 1 ? UNP Q9X1X6 ? ? 'expression tag' -11 1 1 1J5P GLY A 2 ? UNP Q9X1X6 ? ? 'expression tag' -10 2 1 1J5P SER A 3 ? UNP Q9X1X6 ? ? 'expression tag' -9 3 1 1J5P ASP A 4 ? UNP Q9X1X6 ? ? 'expression tag' -8 4 1 1J5P LYS A 5 ? UNP Q9X1X6 ? ? 'expression tag' -7 5 1 1J5P ILE A 6 ? UNP Q9X1X6 ? ? 'expression tag' -6 6 1 1J5P HIS A 7 ? UNP Q9X1X6 ? ? 'expression tag' -5 7 1 1J5P HIS A 8 ? UNP Q9X1X6 ? ? 'expression tag' -4 8 1 1J5P HIS A 9 ? UNP Q9X1X6 ? ? 'expression tag' -3 9 1 1J5P HIS A 10 ? UNP Q9X1X6 ? ? 'expression tag' -2 10 1 1J5P HIS A 11 ? UNP Q9X1X6 ? ? 'expression tag' -1 11 1 1J5P HIS A 12 ? UNP Q9X1X6 ? ? 'expression tag' 0 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAD non-polymer . NICOTINAMIDE-ADENINE-DINUCLEOTIDE ? 'C21 H27 N7 O14 P2' 663.425 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1J5P _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.29 _exptl_crystal.density_percent_sol 45.90 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details '20% PEG 8000, 0.05M KH2PO4, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2002-04-29 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'DOUBLE CRYSTAL MONOCHROMATOR' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.93218 1.0 2 0.979181 1.0 3 0.978932 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.93218, 0.979181, 0.978932' # _reflns.entry_id 1J5P _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 44.717 _reflns.d_resolution_high 1.800 _reflns.number_obs 23895 _reflns.number_all ? _reflns.percent_possible_obs 98.5 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.058 _reflns.pdbx_netI_over_sigmaI 15.6000 _reflns.B_iso_Wilson_estimate 28.93 _reflns.pdbx_redundancy 6.500 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.85 _reflns_shell.percent_possible_all 88.6 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.758 _reflns_shell.meanI_over_sigI_obs 1.4 _reflns_shell.pdbx_redundancy 4.00 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1J5P _refine.ls_number_reflns_obs 20858 _refine.ls_number_reflns_all 20858 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 44.69 _refine.ls_d_res_high 1.90 _refine.ls_percent_reflns_obs 99.8 _refine.ls_R_factor_obs 0.224 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.224 _refine.ls_R_factor_R_free 0.26 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.0 _refine.ls_number_reflns_R_free 2087 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 34.90 _refine.aniso_B[1][1] -3.316 _refine.aniso_B[2][2] -3.316 _refine.aniso_B[3][3] 6.632 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.solvent_model_details 'BULK SOLVENT CORRECTION' _refine.solvent_model_param_ksol 36.7745 _refine.solvent_model_param_bsol 0.356781 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'STANDARD CNS DICTIONARY, ENGH AND HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1838 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 44 _refine_hist.number_atoms_solvent 82 _refine_hist.number_atoms_total 1964 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 44.69 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.41 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 3.112 1.5 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 4.103 2.0 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 4.392 2.0 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 6.231 2.5 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 41 _refine_ls_shell.d_res_high 1.90 _refine_ls_shell.d_res_low 1.92 _refine_ls_shell.number_reflns_R_work 438 _refine_ls_shell.R_factor_R_work 0.3002 _refine_ls_shell.percent_reflns_obs 88.2 _refine_ls_shell.R_factor_R_free 0.3696 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 8.19 _refine_ls_shell.number_reflns_R_free 39 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1J5P _struct.title 'Crystal structure of aspartate dehydrogenase (TM1643) from Thermotoga maritima at 1.9 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1J5P _struct_keywords.text ;TM1643, ASPARTATE DEHYDROGENASE, STRUCTURAL GENOMICS, JCSG, PSI, Protein Structure Initiative, Joint Center for Structural Genomics, OXIDOREDUCTASE ; _struct_keywords.pdbx_keywords OXIDOREDUCTASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 21 ? GLY A 31 ? GLY A 9 GLY A 19 1 ? 11 HELX_P HELX_P2 2 SER A 69 ? LEU A 81 ? SER A 57 LEU A 69 1 ? 13 HELX_P HELX_P3 3 SER A 91 ? ALA A 96 ? SER A 79 ALA A 84 5 ? 6 HELX_P HELX_P4 4 ASP A 97 ? ASN A 110 ? ASP A 85 ASN A 98 1 ? 14 HELX_P HELX_P5 5 GLY A 124 ? LYS A 132 ? GLY A 112 LYS A 120 1 ? 9 HELX_P HELX_P6 6 PRO A 145 ? GLY A 150 ? PRO A 133 GLY A 138 5 ? 6 HELX_P HELX_P7 7 SER A 163 ? PHE A 171 ? SER A 151 PHE A 159 1 ? 9 HELX_P HELX_P8 8 ILE A 175 ? GLY A 186 ? ILE A 163 GLY A 174 1 ? 12 HELX_P HELX_P9 9 SER A 232 ? SER A 248 ? SER A 220 SER A 236 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 50 ? ARG A 51 ? VAL A 38 ARG A 39 A 2 LYS A 35 ? TYR A 39 ? LYS A 23 TYR A 27 A 3 THR A 14 ? ILE A 18 ? THR A 2 ILE A 6 A 4 THR A 63 ? GLU A 66 ? THR A 51 GLU A 54 A 5 ASN A 86 ? ILE A 89 ? ASN A 74 ILE A 77 A 6 ARG A 114 ? PHE A 116 ? ARG A 102 PHE A 104 B 1 THR A 157 ? GLY A 162 ? THR A 145 GLY A 150 B 2 VAL A 190 ? ALA A 196 ? VAL A 178 ALA A 184 B 3 VAL A 135 ? LYS A 144 ? VAL A 123 LYS A 132 B 4 ILE A 204 ? SER A 211 ? ILE A 192 SER A 199 B 5 ASN A 215 ? ILE A 220 ? ASN A 203 ILE A 208 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 50 ? O VAL A 38 N ALA A 38 ? N ALA A 26 A 2 3 O TYR A 37 ? O TYR A 25 N VAL A 15 ? N VAL A 3 A 3 4 N ILE A 18 ? N ILE A 6 O VAL A 65 ? O VAL A 53 A 4 5 N VAL A 64 ? N VAL A 52 O ASN A 86 ? O ASN A 74 A 5 6 N TYR A 87 ? N TYR A 75 O ARG A 114 ? O ARG A 102 B 1 2 N GLY A 162 ? N GLY A 150 O VAL A 192 ? O VAL A 180 B 2 3 O VAL A 195 ? O VAL A 183 N LYS A 144 ? N LYS A 132 B 3 4 N GLU A 141 ? N GLU A 129 O ILE A 206 ? O ILE A 194 B 4 5 N HIS A 205 ? N HIS A 193 O ILE A 220 ? O ILE A 208 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id NAD _struct_site.pdbx_auth_seq_id 300 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 24 _struct_site.details 'BINDING SITE FOR RESIDUE NAD A 300' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 24 GLY A 19 ? GLY A 7 . ? 1_555 ? 2 AC1 24 GLY A 21 ? GLY A 9 . ? 1_555 ? 3 AC1 24 ASN A 22 ? ASN A 10 . ? 1_555 ? 4 AC1 24 ILE A 23 ? ILE A 11 . ? 1_555 ? 5 AC1 24 ASP A 40 ? ASP A 28 . ? 1_555 ? 6 AC1 24 ARG A 41 ? ARG A 29 . ? 1_555 ? 7 AC1 24 ILE A 42 ? ILE A 30 . ? 1_555 ? 8 AC1 24 CYS A 67 ? CYS A 55 . ? 1_555 ? 9 AC1 24 ALA A 68 ? ALA A 56 . ? 1_555 ? 10 AC1 24 SER A 69 ? SER A 57 . ? 1_555 ? 11 AC1 24 PRO A 70 ? PRO A 58 . ? 1_555 ? 12 AC1 24 ALA A 72 ? ALA A 60 . ? 1_555 ? 13 AC1 24 GLU A 75 ? GLU A 63 . ? 1_555 ? 14 AC1 24 TYR A 76 ? TYR A 64 . ? 1_555 ? 15 AC1 24 ILE A 90 ? ILE A 78 . ? 1_555 ? 16 AC1 24 SER A 91 ? SER A 79 . ? 1_555 ? 17 AC1 24 ALA A 121 ? ALA A 109 . ? 1_555 ? 18 AC1 24 ASN A 176 ? ASN A 164 . ? 1_555 ? 19 AC1 24 VAL A 177 ? VAL A 165 . ? 1_555 ? 20 AC1 24 THR A 235 ? THR A 223 . ? 1_555 ? 21 AC1 24 HOH C . ? HOH A 313 . ? 1_555 ? 22 AC1 24 HOH C . ? HOH A 314 . ? 1_555 ? 23 AC1 24 HOH C . ? HOH A 367 . ? 1_555 ? 24 AC1 24 HOH C . ? HOH A 375 . ? 1_555 ? # _atom_sites.entry_id 1J5P _atom_sites.fract_transf_matrix[1][1] 0.015823 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015823 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007924 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -11 ? ? ? A . n A 1 2 GLY 2 -10 ? ? ? A . n A 1 3 SER 3 -9 ? ? ? A . n A 1 4 ASP 4 -8 ? ? ? A . n A 1 5 LYS 5 -7 ? ? ? A . n A 1 6 ILE 6 -6 ? ? ? A . n A 1 7 HIS 7 -5 ? ? ? A . n A 1 8 HIS 8 -4 ? ? ? A . n A 1 9 HIS 9 -3 ? ? ? A . n A 1 10 HIS 10 -2 ? ? ? A . n A 1 11 HIS 11 -1 -1 HIS HIS A . n A 1 12 HIS 12 0 0 HIS HIS A . n A 1 13 MET 13 1 1 MET MET A . n A 1 14 THR 14 2 2 THR THR A . n A 1 15 VAL 15 3 3 VAL VAL A . n A 1 16 LEU 16 4 4 LEU LEU A . n A 1 17 ILE 17 5 5 ILE ILE A . n A 1 18 ILE 18 6 6 ILE ILE A . n A 1 19 GLY 19 7 7 GLY GLY A . n A 1 20 MET 20 8 8 MET MET A . n A 1 21 GLY 21 9 9 GLY GLY A . n A 1 22 ASN 22 10 10 ASN ASN A . n A 1 23 ILE 23 11 11 ILE ILE A . n A 1 24 GLY 24 12 12 GLY GLY A . n A 1 25 LYS 25 13 13 LYS LYS A . n A 1 26 LYS 26 14 14 LYS LYS A . n A 1 27 LEU 27 15 15 LEU LEU A . n A 1 28 VAL 28 16 16 VAL VAL A . n A 1 29 GLU 29 17 17 GLU GLU A . n A 1 30 LEU 30 18 18 LEU LEU A . n A 1 31 GLY 31 19 19 GLY GLY A . n A 1 32 ASN 32 20 20 ASN ASN A . n A 1 33 PHE 33 21 21 PHE PHE A . n A 1 34 GLU 34 22 22 GLU GLU A . n A 1 35 LYS 35 23 23 LYS LYS A . n A 1 36 ILE 36 24 24 ILE ILE A . n A 1 37 TYR 37 25 25 TYR TYR A . n A 1 38 ALA 38 26 26 ALA ALA A . n A 1 39 TYR 39 27 27 TYR TYR A . n A 1 40 ASP 40 28 28 ASP ASP A . n A 1 41 ARG 41 29 29 ARG ARG A . n A 1 42 ILE 42 30 30 ILE ILE A . n A 1 43 SER 43 31 31 SER SER A . n A 1 44 LYS 44 32 32 LYS LYS A . n A 1 45 ASP 45 33 33 ASP ASP A . n A 1 46 ILE 46 34 34 ILE ILE A . n A 1 47 PRO 47 35 35 PRO PRO A . n A 1 48 GLY 48 36 36 GLY GLY A . n A 1 49 VAL 49 37 37 VAL VAL A . n A 1 50 VAL 50 38 38 VAL VAL A . n A 1 51 ARG 51 39 39 ARG ARG A . n A 1 52 LEU 52 40 40 LEU LEU A . n A 1 53 ASP 53 41 41 ASP ASP A . n A 1 54 GLU 54 42 42 GLU GLU A . n A 1 55 PHE 55 43 43 PHE PHE A . n A 1 56 GLN 56 44 44 GLN GLN A . n A 1 57 VAL 57 45 45 VAL VAL A . n A 1 58 PRO 58 46 46 PRO PRO A . n A 1 59 SER 59 47 47 SER SER A . n A 1 60 ASP 60 48 48 ASP ASP A . n A 1 61 VAL 61 49 49 VAL VAL A . n A 1 62 SER 62 50 50 SER SER A . n A 1 63 THR 63 51 51 THR THR A . n A 1 64 VAL 64 52 52 VAL VAL A . n A 1 65 VAL 65 53 53 VAL VAL A . n A 1 66 GLU 66 54 54 GLU GLU A . n A 1 67 CYS 67 55 55 CYS CYS A . n A 1 68 ALA 68 56 56 ALA ALA A . n A 1 69 SER 69 57 57 SER SER A . n A 1 70 PRO 70 58 58 PRO PRO A . n A 1 71 GLU 71 59 59 GLU GLU A . n A 1 72 ALA 72 60 60 ALA ALA A . n A 1 73 VAL 73 61 61 VAL VAL A . n A 1 74 LYS 74 62 62 LYS LYS A . n A 1 75 GLU 75 63 63 GLU GLU A . n A 1 76 TYR 76 64 64 TYR TYR A . n A 1 77 SER 77 65 65 SER SER A . n A 1 78 LEU 78 66 66 LEU LEU A . n A 1 79 GLN 79 67 67 GLN GLN A . n A 1 80 ILE 80 68 68 ILE ILE A . n A 1 81 LEU 81 69 69 LEU LEU A . n A 1 82 LYS 82 70 70 LYS LYS A . n A 1 83 ASN 83 71 71 ASN ASN A . n A 1 84 PRO 84 72 72 PRO PRO A . n A 1 85 VAL 85 73 73 VAL VAL A . n A 1 86 ASN 86 74 74 ASN ASN A . n A 1 87 TYR 87 75 75 TYR TYR A . n A 1 88 ILE 88 76 76 ILE ILE A . n A 1 89 ILE 89 77 77 ILE ILE A . n A 1 90 ILE 90 78 78 ILE ILE A . n A 1 91 SER 91 79 79 SER SER A . n A 1 92 THR 92 80 80 THR THR A . n A 1 93 SER 93 81 81 SER SER A . n A 1 94 ALA 94 82 82 ALA ALA A . n A 1 95 PHE 95 83 83 PHE PHE A . n A 1 96 ALA 96 84 84 ALA ALA A . n A 1 97 ASP 97 85 85 ASP ASP A . n A 1 98 GLU 98 86 86 GLU GLU A . n A 1 99 VAL 99 87 87 VAL VAL A . n A 1 100 PHE 100 88 88 PHE PHE A . n A 1 101 ARG 101 89 89 ARG ARG A . n A 1 102 GLU 102 90 90 GLU GLU A . n A 1 103 ARG 103 91 91 ARG ARG A . n A 1 104 PHE 104 92 92 PHE PHE A . n A 1 105 PHE 105 93 93 PHE PHE A . n A 1 106 SER 106 94 94 SER SER A . n A 1 107 GLU 107 95 95 GLU GLU A . n A 1 108 LEU 108 96 96 LEU LEU A . n A 1 109 LYS 109 97 97 LYS LYS A . n A 1 110 ASN 110 98 98 ASN ASN A . n A 1 111 SER 111 99 99 SER SER A . n A 1 112 PRO 112 100 100 PRO PRO A . n A 1 113 ALA 113 101 101 ALA ALA A . n A 1 114 ARG 114 102 102 ARG ARG A . n A 1 115 VAL 115 103 103 VAL VAL A . n A 1 116 PHE 116 104 104 PHE PHE A . n A 1 117 PHE 117 105 105 PHE PHE A . n A 1 118 PRO 118 106 106 PRO PRO A . n A 1 119 SER 119 107 107 SER SER A . n A 1 120 GLY 120 108 108 GLY GLY A . n A 1 121 ALA 121 109 109 ALA ALA A . n A 1 122 ILE 122 110 110 ILE ILE A . n A 1 123 GLY 123 111 111 GLY GLY A . n A 1 124 GLY 124 112 112 GLY GLY A . n A 1 125 LEU 125 113 113 LEU LEU A . n A 1 126 ASP 126 114 114 ASP ASP A . n A 1 127 VAL 127 115 115 VAL VAL A . n A 1 128 LEU 128 116 116 LEU LEU A . n A 1 129 SER 129 117 117 SER SER A . n A 1 130 SER 130 118 118 SER SER A . n A 1 131 ILE 131 119 119 ILE ILE A . n A 1 132 LYS 132 120 120 LYS LYS A . n A 1 133 ASP 133 121 121 ASP ASP A . n A 1 134 PHE 134 122 122 PHE PHE A . n A 1 135 VAL 135 123 123 VAL VAL A . n A 1 136 LYS 136 124 124 LYS LYS A . n A 1 137 ASN 137 125 125 ASN ASN A . n A 1 138 VAL 138 126 126 VAL VAL A . n A 1 139 ARG 139 127 127 ARG ARG A . n A 1 140 ILE 140 128 128 ILE ILE A . n A 1 141 GLU 141 129 129 GLU GLU A . n A 1 142 THR 142 130 130 THR THR A . n A 1 143 ILE 143 131 131 ILE ILE A . n A 1 144 LYS 144 132 132 LYS LYS A . n A 1 145 PRO 145 133 133 PRO PRO A . n A 1 146 PRO 146 134 134 PRO PRO A . n A 1 147 LYS 147 135 135 LYS LYS A . n A 1 148 SER 148 136 136 SER SER A . n A 1 149 LEU 149 137 137 LEU LEU A . n A 1 150 GLY 150 138 138 GLY GLY A . n A 1 151 LEU 151 139 139 LEU LEU A . n A 1 152 ASP 152 140 140 ASP ASP A . n A 1 153 LEU 153 141 141 LEU LEU A . n A 1 154 LYS 154 142 142 LYS LYS A . n A 1 155 GLY 155 143 143 GLY GLY A . n A 1 156 LYS 156 144 144 LYS LYS A . n A 1 157 THR 157 145 145 THR THR A . n A 1 158 VAL 158 146 146 VAL VAL A . n A 1 159 VAL 159 147 147 VAL VAL A . n A 1 160 PHE 160 148 148 PHE PHE A . n A 1 161 GLU 161 149 149 GLU GLU A . n A 1 162 GLY 162 150 150 GLY GLY A . n A 1 163 SER 163 151 151 SER SER A . n A 1 164 VAL 164 152 152 VAL VAL A . n A 1 165 GLU 165 153 153 GLU GLU A . n A 1 166 GLU 166 154 154 GLU GLU A . n A 1 167 ALA 167 155 155 ALA ALA A . n A 1 168 SER 168 156 156 SER SER A . n A 1 169 LYS 169 157 157 LYS LYS A . n A 1 170 LEU 170 158 158 LEU LEU A . n A 1 171 PHE 171 159 159 PHE PHE A . n A 1 172 PRO 172 160 160 PRO PRO A . n A 1 173 ARG 173 161 161 ARG ARG A . n A 1 174 ASN 174 162 162 ASN ASN A . n A 1 175 ILE 175 163 163 ILE ILE A . n A 1 176 ASN 176 164 164 ASN ASN A . n A 1 177 VAL 177 165 165 VAL VAL A . n A 1 178 ALA 178 166 166 ALA ALA A . n A 1 179 SER 179 167 167 SER SER A . n A 1 180 THR 180 168 168 THR THR A . n A 1 181 ILE 181 169 169 ILE ILE A . n A 1 182 GLY 182 170 170 GLY GLY A . n A 1 183 LEU 183 171 171 LEU LEU A . n A 1 184 ILE 184 172 172 ILE ILE A . n A 1 185 VAL 185 173 173 VAL VAL A . n A 1 186 GLY 186 174 174 GLY GLY A . n A 1 187 PHE 187 175 175 PHE PHE A . n A 1 188 GLU 188 176 176 GLU GLU A . n A 1 189 LYS 189 177 177 LYS LYS A . n A 1 190 VAL 190 178 178 VAL VAL A . n A 1 191 LYS 191 179 179 LYS LYS A . n A 1 192 VAL 192 180 180 VAL VAL A . n A 1 193 THR 193 181 181 THR THR A . n A 1 194 ILE 194 182 182 ILE ILE A . n A 1 195 VAL 195 183 183 VAL VAL A . n A 1 196 ALA 196 184 184 ALA ALA A . n A 1 197 ASP 197 185 185 ASP ASP A . n A 1 198 PRO 198 186 186 PRO PRO A . n A 1 199 ALA 199 187 187 ALA ALA A . n A 1 200 MET 200 188 188 MET MET A . n A 1 201 ASP 201 189 189 ASP ASP A . n A 1 202 HIS 202 190 190 HIS HIS A . n A 1 203 ASN 203 191 191 ASN ASN A . n A 1 204 ILE 204 192 192 ILE ILE A . n A 1 205 HIS 205 193 193 HIS HIS A . n A 1 206 ILE 206 194 194 ILE ILE A . n A 1 207 VAL 207 195 195 VAL VAL A . n A 1 208 ARG 208 196 196 ARG ARG A . n A 1 209 ILE 209 197 197 ILE ILE A . n A 1 210 SER 210 198 198 SER SER A . n A 1 211 SER 211 199 199 SER SER A . n A 1 212 ALA 212 200 200 ALA ALA A . n A 1 213 ILE 213 201 201 ILE ILE A . n A 1 214 GLY 214 202 202 GLY GLY A . n A 1 215 ASN 215 203 203 ASN ASN A . n A 1 216 TYR 216 204 204 TYR TYR A . n A 1 217 GLU 217 205 205 GLU GLU A . n A 1 218 PHE 218 206 206 PHE PHE A . n A 1 219 LYS 219 207 207 LYS LYS A . n A 1 220 ILE 220 208 208 ILE ILE A . n A 1 221 GLU 221 209 209 GLU GLU A . n A 1 222 ASN 222 210 210 ASN ASN A . n A 1 223 ILE 223 211 211 ILE ILE A . n A 1 224 PRO 224 212 ? ? ? A . n A 1 225 SER 225 213 ? ? ? A . n A 1 226 PRO 226 214 ? ? ? A . n A 1 227 GLU 227 215 ? ? ? A . n A 1 228 ASN 228 216 ? ? ? A . n A 1 229 PRO 229 217 ? ? ? A . n A 1 230 LYS 230 218 ? ? ? A . n A 1 231 THR 231 219 ? ? ? A . n A 1 232 SER 232 220 220 SER SER A . n A 1 233 MET 233 221 221 MET MET A . n A 1 234 LEU 234 222 222 LEU LEU A . n A 1 235 THR 235 223 223 THR THR A . n A 1 236 VAL 236 224 224 VAL VAL A . n A 1 237 TYR 237 225 225 TYR TYR A . n A 1 238 SER 238 226 226 SER SER A . n A 1 239 ILE 239 227 227 ILE ILE A . n A 1 240 LEU 240 228 228 LEU LEU A . n A 1 241 ARG 241 229 229 ARG ARG A . n A 1 242 THR 242 230 230 THR THR A . n A 1 243 LEU 243 231 231 LEU LEU A . n A 1 244 ARG 244 232 232 ARG ARG A . n A 1 245 ASN 245 233 233 ASN ASN A . n A 1 246 LEU 246 234 234 LEU LEU A . n A 1 247 GLU 247 235 235 GLU GLU A . n A 1 248 SER 248 236 236 SER SER A . n A 1 249 LYS 249 237 237 LYS LYS A . n A 1 250 ILE 250 238 238 ILE ILE A . n A 1 251 ILE 251 239 239 ILE ILE A . n A 1 252 PHE 252 240 240 PHE PHE A . n A 1 253 GLY 253 241 241 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD 1 300 300 NAD NAD A . C 3 HOH 1 301 1 HOH HOH A . C 3 HOH 2 302 2 HOH HOH A . C 3 HOH 3 303 3 HOH HOH A . C 3 HOH 4 304 4 HOH HOH A . C 3 HOH 5 305 5 HOH HOH A . C 3 HOH 6 306 6 HOH HOH A . C 3 HOH 7 307 7 HOH HOH A . C 3 HOH 8 308 8 HOH HOH A . C 3 HOH 9 309 9 HOH HOH A . C 3 HOH 10 310 10 HOH HOH A . C 3 HOH 11 311 11 HOH HOH A . C 3 HOH 12 312 12 HOH HOH A . C 3 HOH 13 313 13 HOH HOH A . C 3 HOH 14 314 14 HOH HOH A . C 3 HOH 15 315 15 HOH HOH A . C 3 HOH 16 316 16 HOH HOH A . C 3 HOH 17 317 17 HOH HOH A . C 3 HOH 18 318 18 HOH HOH A . C 3 HOH 19 319 19 HOH HOH A . C 3 HOH 20 320 20 HOH HOH A . C 3 HOH 21 321 21 HOH HOH A . C 3 HOH 22 322 22 HOH HOH A . C 3 HOH 23 323 23 HOH HOH A . C 3 HOH 24 324 24 HOH HOH A . C 3 HOH 25 325 25 HOH HOH A . C 3 HOH 26 326 26 HOH HOH A . C 3 HOH 27 327 27 HOH HOH A . C 3 HOH 28 328 28 HOH HOH A . C 3 HOH 29 329 29 HOH HOH A . C 3 HOH 30 330 30 HOH HOH A . C 3 HOH 31 331 31 HOH HOH A . C 3 HOH 32 332 32 HOH HOH A . C 3 HOH 33 333 33 HOH HOH A . C 3 HOH 34 334 34 HOH HOH A . C 3 HOH 35 335 35 HOH HOH A . C 3 HOH 36 336 36 HOH HOH A . C 3 HOH 37 337 37 HOH HOH A . C 3 HOH 38 338 38 HOH HOH A . C 3 HOH 39 339 39 HOH HOH A . C 3 HOH 40 340 40 HOH HOH A . C 3 HOH 41 341 41 HOH HOH A . C 3 HOH 42 342 42 HOH HOH A . C 3 HOH 43 343 43 HOH HOH A . C 3 HOH 44 344 44 HOH HOH A . C 3 HOH 45 345 45 HOH HOH A . C 3 HOH 46 346 46 HOH HOH A . C 3 HOH 47 347 47 HOH HOH A . C 3 HOH 48 348 48 HOH HOH A . C 3 HOH 49 349 49 HOH HOH A . C 3 HOH 50 350 50 HOH HOH A . C 3 HOH 51 351 51 HOH HOH A . C 3 HOH 52 352 52 HOH HOH A . C 3 HOH 53 353 53 HOH HOH A . C 3 HOH 54 354 54 HOH HOH A . C 3 HOH 55 355 55 HOH HOH A . C 3 HOH 56 356 56 HOH HOH A . C 3 HOH 57 357 57 HOH HOH A . C 3 HOH 58 358 58 HOH HOH A . C 3 HOH 59 359 59 HOH HOH A . C 3 HOH 60 360 60 HOH HOH A . C 3 HOH 61 361 61 HOH HOH A . C 3 HOH 62 362 62 HOH HOH A . C 3 HOH 63 363 63 HOH HOH A . C 3 HOH 64 364 64 HOH HOH A . C 3 HOH 65 365 65 HOH HOH A . C 3 HOH 66 366 66 HOH HOH A . C 3 HOH 67 367 67 HOH HOH A . C 3 HOH 68 368 68 HOH HOH A . C 3 HOH 69 369 69 HOH HOH A . C 3 HOH 70 370 70 HOH HOH A . C 3 HOH 71 371 71 HOH HOH A . C 3 HOH 72 372 72 HOH HOH A . C 3 HOH 73 373 73 HOH HOH A . C 3 HOH 74 374 74 HOH HOH A . C 3 HOH 75 375 75 HOH HOH A . C 3 HOH 76 376 76 HOH HOH A . C 3 HOH 77 377 77 HOH HOH A . C 3 HOH 78 378 78 HOH HOH A . C 3 HOH 79 379 79 HOH HOH A . C 3 HOH 80 380 80 HOH HOH A . C 3 HOH 81 381 81 HOH HOH A . C 3 HOH 82 382 82 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6540 ? 1 MORE -25 ? 1 'SSA (A^2)' 20370 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 63.2000000000 -1.0000000000 0.0000000000 0.0000000000 63.2000000000 0.0000000000 0.0000000000 -1.0000000000 63.1000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-07-10 2 'Structure model' 1 1 2008-04-26 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-07-18 5 'Structure model' 1 4 2023-01-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' Advisory 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 5 'Structure model' Advisory 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_database_related 2 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 3 5 'Structure model' database_2 4 5 'Structure model' pdbx_unobs_or_zero_occ_atoms 5 5 'Structure model' struct_ref_seq_dif 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_ref_seq_dif.details' 4 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALA 'data scaling' . ? 2 CCP4 'data reduction' . ? 3 SOLVE phasing . ? 4 RESOLVE 'model building' . ? 5 CNS refinement 1.1 ? 6 CCP4 'data scaling' '(SCALA)' ? 7 RESOLVE phasing . ? 8 # _pdbx_database_remark.id 300 _pdbx_database_remark.text ;BIOMOLECULE: 1 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 1 CHAIN. DIMER PRESENT IN CRYSTAL AND MAY REPRESENT THE BIOLOGICALLY SIGNIFICANT OLIGOMER BY HOMOLOGY WITH 1EBF. THE DIMER CAN BE GENERATED BY APPLYING THE FOLLOWING TRANSFORMATIONS. MATRIX = ( -0.00003 -1.00000 0.00000 ) ( -1.00000 0.00003 0.00000 ) ( 0.00000 0.00000 -1.00000 ) TRANSLATION= (63.20332 63.20157 63.10000 ) ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 0 ? ? -40.85 -86.98 2 1 MET A 8 ? ? -111.94 51.51 3 1 PRO A 35 ? ? -103.88 -98.39 4 1 CYS A 55 ? ? -153.24 56.21 5 1 ALA A 56 ? ? -120.49 -69.01 6 1 PRO A 160 ? ? -37.52 -24.36 7 1 ARG A 161 ? ? -69.43 -77.08 8 1 ASN A 162 ? ? -66.49 -152.38 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A ASP 33 ? CB ? A ASP 45 CB 2 1 Y 0 A ASP 33 ? CG ? A ASP 45 CG 3 1 Y 0 A ASP 33 ? OD1 ? A ASP 45 OD1 4 1 Y 0 A ASP 33 ? OD2 ? A ASP 45 OD2 5 1 Y 0 A ILE 34 ? CB ? A ILE 46 CB 6 1 Y 0 A ILE 34 ? CG1 ? A ILE 46 CG1 7 1 Y 0 A ILE 34 ? CG2 ? A ILE 46 CG2 8 1 Y 0 A ILE 34 ? CD1 ? A ILE 46 CD1 9 1 Y 0 A GLU 86 ? CD ? A GLU 98 CD 10 1 Y 0 A GLU 86 ? OE1 ? A GLU 98 OE1 11 1 Y 0 A GLU 86 ? OE2 ? A GLU 98 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -11 ? A MET 1 2 1 Y 1 A GLY -10 ? A GLY 2 3 1 Y 1 A SER -9 ? A SER 3 4 1 Y 1 A ASP -8 ? A ASP 4 5 1 Y 1 A LYS -7 ? A LYS 5 6 1 Y 1 A ILE -6 ? A ILE 6 7 1 Y 1 A HIS -5 ? A HIS 7 8 1 Y 1 A HIS -4 ? A HIS 8 9 1 Y 1 A HIS -3 ? A HIS 9 10 1 Y 1 A HIS -2 ? A HIS 10 11 1 Y 1 A PRO 212 ? A PRO 224 12 1 Y 1 A SER 213 ? A SER 225 13 1 Y 1 A PRO 214 ? A PRO 226 14 1 Y 1 A GLU 215 ? A GLU 227 15 1 Y 1 A ASN 216 ? A ASN 228 16 1 Y 1 A PRO 217 ? A PRO 229 17 1 Y 1 A LYS 218 ? A LYS 230 18 1 Y 1 A THR 219 ? A THR 231 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 NICOTINAMIDE-ADENINE-DINUCLEOTIDE NAD 3 water HOH #