data_1JB1 # _entry.id 1JB1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.286 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1JB1 RCSB RCSB013572 WWPDB D_1000013572 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1JB1 _pdbx_database_status.recvd_initial_deposition_date 2001-06-01 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Fieulaine, S.' 1 'Morera, S.' 2 'Poncet, S.' 3 'Monedero, V.' 4 'Gueguen-Chaignon, V.' 5 'Galinier, A.' 6 'Janin, J.' 7 'Deutscher, J.' 8 'Nessler, S.' 9 # _citation.id primary _citation.title 'X-ray structure of HPr kinase: a bacterial protein kinase with a P-loop nucleotide-binding domain.' _citation.journal_abbrev 'EMBO J.' _citation.journal_volume 20 _citation.page_first 3917 _citation.page_last 3927 _citation.year 2001 _citation.journal_id_ASTM EMJODG _citation.country UK _citation.journal_id_ISSN 0261-4189 _citation.journal_id_CSD 0897 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11483495 _citation.pdbx_database_id_DOI 10.1093/emboj/20.15.3917 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Fieulaine, S.' 1 primary 'Morera, S.' 2 primary 'Poncet, S.' 3 primary 'Monedero, V.' 4 primary 'Gueguen-Chaignon, V.' 5 primary 'Galinier, A.' 6 primary 'Janin, J.' 7 primary 'Deutscher, J.' 8 primary 'Nessler, S.' 9 # _cell.entry_id 1JB1 _cell.length_a 107.738 _cell.length_b 107.738 _cell.length_c 66.498 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1JB1 _symmetry.space_group_name_H-M 'P 63 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'HPRK PROTEIN' 22961.021 1 '2.7.1.-, 3.1.3.-' ? 'C-Terminus (residues 128-319)' ? 2 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 3 water nat water 18.015 50 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)RGSHHHHHHGS(MSE)YLDSQLAERRS(MSE)HGVLVDIYGLGVLITGDSGVGKSETALELVQRGHRLIADDRVD VYQQDEQTIVGAAPPILSHLLEIRGLGIIDV(MSE)NLFGAGAVREDTTISLIVHLENWTPDKTFDRLGSGEQTQLIFDV PVPKITVPVKVGRNLAIIIEVAA(MSE)NFRAKS(MSE)GYDATKTFEKNLNHLIEHNEETDQNSSGDK ; _entity_poly.pdbx_seq_one_letter_code_can ;MRGSHHHHHHGSMYLDSQLAERRSMHGVLVDIYGLGVLITGDSGVGKSETALELVQRGHRLIADDRVDVYQQDEQTIVGA APPILSHLLEIRGLGIIDVMNLFGAGAVREDTTISLIVHLENWTPDKTFDRLGSGEQTQLIFDVPVPKITVPVKVGRNLA IIIEVAAMNFRAKSMGYDATKTFEKNLNHLIEHNEETDQNSSGDK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 ARG n 1 3 GLY n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 GLY n 1 12 SER n 1 13 MSE n 1 14 TYR n 1 15 LEU n 1 16 ASP n 1 17 SER n 1 18 GLN n 1 19 LEU n 1 20 ALA n 1 21 GLU n 1 22 ARG n 1 23 ARG n 1 24 SER n 1 25 MSE n 1 26 HIS n 1 27 GLY n 1 28 VAL n 1 29 LEU n 1 30 VAL n 1 31 ASP n 1 32 ILE n 1 33 TYR n 1 34 GLY n 1 35 LEU n 1 36 GLY n 1 37 VAL n 1 38 LEU n 1 39 ILE n 1 40 THR n 1 41 GLY n 1 42 ASP n 1 43 SER n 1 44 GLY n 1 45 VAL n 1 46 GLY n 1 47 LYS n 1 48 SER n 1 49 GLU n 1 50 THR n 1 51 ALA n 1 52 LEU n 1 53 GLU n 1 54 LEU n 1 55 VAL n 1 56 GLN n 1 57 ARG n 1 58 GLY n 1 59 HIS n 1 60 ARG n 1 61 LEU n 1 62 ILE n 1 63 ALA n 1 64 ASP n 1 65 ASP n 1 66 ARG n 1 67 VAL n 1 68 ASP n 1 69 VAL n 1 70 TYR n 1 71 GLN n 1 72 GLN n 1 73 ASP n 1 74 GLU n 1 75 GLN n 1 76 THR n 1 77 ILE n 1 78 VAL n 1 79 GLY n 1 80 ALA n 1 81 ALA n 1 82 PRO n 1 83 PRO n 1 84 ILE n 1 85 LEU n 1 86 SER n 1 87 HIS n 1 88 LEU n 1 89 LEU n 1 90 GLU n 1 91 ILE n 1 92 ARG n 1 93 GLY n 1 94 LEU n 1 95 GLY n 1 96 ILE n 1 97 ILE n 1 98 ASP n 1 99 VAL n 1 100 MSE n 1 101 ASN n 1 102 LEU n 1 103 PHE n 1 104 GLY n 1 105 ALA n 1 106 GLY n 1 107 ALA n 1 108 VAL n 1 109 ARG n 1 110 GLU n 1 111 ASP n 1 112 THR n 1 113 THR n 1 114 ILE n 1 115 SER n 1 116 LEU n 1 117 ILE n 1 118 VAL n 1 119 HIS n 1 120 LEU n 1 121 GLU n 1 122 ASN n 1 123 TRP n 1 124 THR n 1 125 PRO n 1 126 ASP n 1 127 LYS n 1 128 THR n 1 129 PHE n 1 130 ASP n 1 131 ARG n 1 132 LEU n 1 133 GLY n 1 134 SER n 1 135 GLY n 1 136 GLU n 1 137 GLN n 1 138 THR n 1 139 GLN n 1 140 LEU n 1 141 ILE n 1 142 PHE n 1 143 ASP n 1 144 VAL n 1 145 PRO n 1 146 VAL n 1 147 PRO n 1 148 LYS n 1 149 ILE n 1 150 THR n 1 151 VAL n 1 152 PRO n 1 153 VAL n 1 154 LYS n 1 155 VAL n 1 156 GLY n 1 157 ARG n 1 158 ASN n 1 159 LEU n 1 160 ALA n 1 161 ILE n 1 162 ILE n 1 163 ILE n 1 164 GLU n 1 165 VAL n 1 166 ALA n 1 167 ALA n 1 168 MSE n 1 169 ASN n 1 170 PHE n 1 171 ARG n 1 172 ALA n 1 173 LYS n 1 174 SER n 1 175 MSE n 1 176 GLY n 1 177 TYR n 1 178 ASP n 1 179 ALA n 1 180 THR n 1 181 LYS n 1 182 THR n 1 183 PHE n 1 184 GLU n 1 185 LYS n 1 186 ASN n 1 187 LEU n 1 188 ASN n 1 189 HIS n 1 190 LEU n 1 191 ILE n 1 192 GLU n 1 193 HIS n 1 194 ASN n 1 195 GLU n 1 196 GLU n 1 197 THR n 1 198 ASP n 1 199 GLN n 1 200 ASN n 1 201 SER n 1 202 SER n 1 203 GLY n 1 204 ASP n 1 205 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Lactobacillus _entity_src_gen.pdbx_gene_src_gene PTSK _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Lactobacillus casei' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1582 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain NM522 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pQE30 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code HPRK_LACCA _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession Q9RE09 _struct_ref.pdbx_align_begin 128 _struct_ref.pdbx_seq_one_letter_code ;YLDSQLAERRSMHGVLVDIYGLGVLITGDSGVGKSETALELVQRGHRLIADDRVDVYQQDEQTIVGAAPPILSHLLEIRG LGIIDVMNLFGAGAVREDTTISLIVHLENWTPDKTFDRLGSGEQTQLIFDVPVPKITVPVKVGRNLAIIIEVAAMNFRAK SMGYDATKTFEKNLNHLIEHNEETDQNSSGDK ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1JB1 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 14 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 205 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9RE09 _struct_ref_seq.db_align_beg 128 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 319 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 128 _struct_ref_seq.pdbx_auth_seq_align_end 319 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1JB1 MSE A 1 ? UNP Q9RE09 ? ? 'EXPRESSION TAG' 115 1 1 1JB1 ARG A 2 ? UNP Q9RE09 ? ? 'EXPRESSION TAG' 116 2 1 1JB1 GLY A 3 ? UNP Q9RE09 ? ? 'EXPRESSION TAG' 117 3 1 1JB1 SER A 4 ? UNP Q9RE09 ? ? 'EXPRESSION TAG' 118 4 1 1JB1 HIS A 5 ? UNP Q9RE09 ? ? 'EXPRESSION TAG' 119 5 1 1JB1 HIS A 6 ? UNP Q9RE09 ? ? 'EXPRESSION TAG' 120 6 1 1JB1 HIS A 7 ? UNP Q9RE09 ? ? 'EXPRESSION TAG' 121 7 1 1JB1 HIS A 8 ? UNP Q9RE09 ? ? 'EXPRESSION TAG' 122 8 1 1JB1 HIS A 9 ? UNP Q9RE09 ? ? 'EXPRESSION TAG' 123 9 1 1JB1 HIS A 10 ? UNP Q9RE09 ? ? 'EXPRESSION TAG' 124 10 1 1JB1 GLY A 11 ? UNP Q9RE09 ? ? 'EXPRESSION TAG' 125 11 1 1JB1 SER A 12 ? UNP Q9RE09 ? ? 'EXPRESSION TAG' 126 12 1 1JB1 MSE A 13 ? UNP Q9RE09 ? ? 'EXPRESSION TAG' 127 13 1 1JB1 MSE A 25 ? UNP Q9RE09 MET 139 'MODIFIED RESIDUE' 139 14 1 1JB1 MSE A 100 ? UNP Q9RE09 MET 214 'MODIFIED RESIDUE' 214 15 1 1JB1 MSE A 168 ? UNP Q9RE09 MET 282 'MODIFIED RESIDUE' 282 16 1 1JB1 MSE A 175 ? UNP Q9RE09 MET 289 'MODIFIED RESIDUE' 289 17 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1JB1 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.43 _exptl_crystal.density_percent_sol 49.29 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.2 _exptl_crystal_grow.pdbx_details 'ammonium phosphate, sodium citrate, pH 5.2, VAPOR DIFFUSION, HANGING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD 'ADSC QUANTUM 4' 2000-09-23 ? 2 CCD 'ADSC QUANTUM 4' 2000-09-23 ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal, Si(111) or Si(311)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9393 1.0 2 0.9792 1.0 3 0.9790 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'ESRF BEAMLINE ID14-4' ESRF ID14-4 ? '0.9393, 0.9792, 0.9790' 2 SYNCHROTRON 'ESRF BEAMLINE ID14-4' ESRF ID14-4 ? 0.9393 # _reflns.entry_id 1JB1 _reflns.observed_criterion_sigma_I 1 _reflns.observed_criterion_sigma_F 2 _reflns.d_resolution_low 20 _reflns.d_resolution_high 2.8 _reflns.number_obs 5892 _reflns.number_all 5909 _reflns.percent_possible_obs 99.3 _reflns.pdbx_Rmerge_I_obs 0.051 _reflns.pdbx_Rsym_value 0.051 _reflns.pdbx_netI_over_sigmaI 5.1 _reflns.B_iso_Wilson_estimate 75 _reflns.pdbx_redundancy 6.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.8 _reflns_shell.d_res_low 2.95 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.426 _reflns_shell.pdbx_Rsym_value 0.426 _reflns_shell.meanI_over_sigI_obs 2 _reflns_shell.pdbx_redundancy 6.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 5909 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1JB1 _refine.ls_number_reflns_obs 5892 _refine.ls_number_reflns_all 5909 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 20 _refine.ls_d_res_high 2.8 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.235 _refine.ls_R_factor_R_free 0.288 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 335 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1181 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 50 _refine_hist.number_atoms_total 1236 _refine_hist.d_res_high 2.8 _refine_hist.d_res_low 20 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.01 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 3.05 ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1JB1 _struct.title 'Lactobacillus casei HprK/P Bound to Phosphate' _struct.pdbx_descriptor 'HPRK PROTEIN (E.C.2.7.1.-/3.1.3.-)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1JB1 _struct_keywords.pdbx_keywords TRANSFERASE/HYDROLASE _struct_keywords.text 'catabolite repression, HPr phosphorylation, Lactobacillus casei, P-loop, protein kinase, hexamer, TRANSFERASE-HYDROLASE COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 46 ? ARG A 57 ? GLY A 160 ARG A 171 1 ? 12 HELX_P HELX_P2 2 PRO A 82 ? SER A 86 ? PRO A 196 SER A 200 5 ? 5 HELX_P HELX_P3 3 VAL A 99 ? GLY A 104 ? VAL A 213 GLY A 218 1 ? 6 HELX_P HELX_P4 4 ALA A 105 ? ALA A 107 ? ALA A 219 ALA A 221 5 ? 3 HELX_P HELX_P5 5 ASN A 158 ? MSE A 175 ? ASN A 272 MSE A 289 1 ? 18 HELX_P HELX_P6 6 ASP A 178 ? GLU A 192 ? ASP A 292 GLU A 306 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A SER 24 C ? ? ? 1_555 A MSE 25 N ? ? A SER 138 A MSE 139 1_555 ? ? ? ? ? ? ? 1.330 ? covale2 covale ? ? A MSE 25 C ? ? ? 1_555 A HIS 26 N ? ? A MSE 139 A HIS 140 1_555 ? ? ? ? ? ? ? 1.327 ? covale3 covale ? ? A VAL 99 C ? ? ? 1_555 A MSE 100 N ? ? A VAL 213 A MSE 214 1_555 ? ? ? ? ? ? ? 1.323 ? covale4 covale ? ? A MSE 100 C ? ? ? 1_555 A ASN 101 N ? ? A MSE 214 A ASN 215 1_555 ? ? ? ? ? ? ? 1.329 ? covale5 covale ? ? A ALA 167 C ? ? ? 1_555 A MSE 168 N ? ? A ALA 281 A MSE 282 1_555 ? ? ? ? ? ? ? 1.333 ? covale6 covale ? ? A MSE 168 C ? ? ? 1_555 A ASN 169 N ? ? A MSE 282 A ASN 283 1_555 ? ? ? ? ? ? ? 1.321 ? covale7 covale ? ? A SER 174 C ? ? ? 1_555 A MSE 175 N ? ? A SER 288 A MSE 289 1_555 ? ? ? ? ? ? ? 1.329 ? covale8 covale ? ? A MSE 175 C ? ? ? 1_555 A GLY 176 N ? ? A MSE 289 A GLY 290 1_555 ? ? ? ? ? ? ? 1.329 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 5 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 23 ? HIS A 26 ? ARG A 137 HIS A 140 A 2 ARG A 66 ? VAL A 69 ? ARG A 180 VAL A 183 A 3 VAL A 78 ? ALA A 80 ? VAL A 192 ALA A 194 A 4 ASP A 111 ? THR A 113 ? ASP A 225 THR A 227 B 1 ARG A 60 ? ALA A 63 ? ARG A 174 ALA A 177 B 2 VAL A 28 ? ILE A 32 ? VAL A 142 ILE A 146 B 3 LEU A 35 ? THR A 40 ? LEU A 149 THR A 154 B 4 LEU A 116 ? GLU A 121 ? LEU A 230 GLU A 235 B 5 LYS A 148 ? PRO A 152 ? LYS A 262 PRO A 266 C 1 LEU A 88 ? ILE A 91 ? LEU A 202 ILE A 205 C 2 GLY A 95 ? ASP A 98 ? GLY A 209 ASP A 212 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O MSE A 25 ? O MSE A 139 N VAL A 67 ? N VAL A 181 A 2 3 N ASP A 68 ? N ASP A 182 O ALA A 80 ? O ALA A 194 A 3 4 N GLY A 79 ? N GLY A 193 O THR A 112 ? O THR A 226 B 1 2 O ALA A 63 ? O ALA A 177 N LEU A 29 ? N LEU A 143 B 2 3 N ILE A 32 ? N ILE A 146 O LEU A 35 ? O LEU A 149 B 3 4 N LEU A 38 ? N LEU A 152 O LEU A 116 ? O LEU A 230 B 4 5 N HIS A 119 ? N HIS A 233 O ILE A 149 ? O ILE A 263 C 1 2 O ILE A 91 ? O ILE A 205 N GLY A 95 ? N GLY A 209 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 7 _struct_site.details 'BINDING SITE FOR RESIDUE PO4 A 400' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 SER A 43 ? SER A 157 . ? 1_555 ? 2 AC1 7 GLY A 44 ? GLY A 158 . ? 1_555 ? 3 AC1 7 VAL A 45 ? VAL A 159 . ? 1_555 ? 4 AC1 7 GLY A 46 ? GLY A 160 . ? 1_555 ? 5 AC1 7 LYS A 47 ? LYS A 161 . ? 1_555 ? 6 AC1 7 SER A 48 ? SER A 162 . ? 1_555 ? 7 AC1 7 GLU A 49 ? GLU A 163 . ? 1_555 ? # _database_PDB_matrix.entry_id 1JB1 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1JB1 _atom_sites.fract_transf_matrix[1][1] 0.009282 _atom_sites.fract_transf_matrix[1][2] 0.005359 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010718 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015038 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 115 ? ? ? A . n A 1 2 ARG 2 116 ? ? ? A . n A 1 3 GLY 3 117 ? ? ? A . n A 1 4 SER 4 118 ? ? ? A . n A 1 5 HIS 5 119 ? ? ? A . n A 1 6 HIS 6 120 ? ? ? A . n A 1 7 HIS 7 121 ? ? ? A . n A 1 8 HIS 8 122 ? ? ? A . n A 1 9 HIS 9 123 ? ? ? A . n A 1 10 HIS 10 124 ? ? ? A . n A 1 11 GLY 11 125 ? ? ? A . n A 1 12 SER 12 126 ? ? ? A . n A 1 13 MSE 13 127 ? ? ? A . n A 1 14 TYR 14 128 ? ? ? A . n A 1 15 LEU 15 129 ? ? ? A . n A 1 16 ASP 16 130 ? ? ? A . n A 1 17 SER 17 131 ? ? ? A . n A 1 18 GLN 18 132 ? ? ? A . n A 1 19 LEU 19 133 ? ? ? A . n A 1 20 ALA 20 134 ? ? ? A . n A 1 21 GLU 21 135 135 GLU GLU A . n A 1 22 ARG 22 136 136 ARG ARG A . n A 1 23 ARG 23 137 137 ARG ALA A . n A 1 24 SER 24 138 138 SER SER A . n A 1 25 MSE 25 139 139 MSE MSE A . n A 1 26 HIS 26 140 140 HIS ALA A . n A 1 27 GLY 27 141 141 GLY GLY A . n A 1 28 VAL 28 142 142 VAL VAL A . n A 1 29 LEU 29 143 143 LEU LEU A . n A 1 30 VAL 30 144 144 VAL VAL A . n A 1 31 ASP 31 145 145 ASP ASP A . n A 1 32 ILE 32 146 146 ILE ILE A . n A 1 33 TYR 33 147 147 TYR TYR A . n A 1 34 GLY 34 148 148 GLY GLY A . n A 1 35 LEU 35 149 149 LEU LEU A . n A 1 36 GLY 36 150 150 GLY GLY A . n A 1 37 VAL 37 151 151 VAL VAL A . n A 1 38 LEU 38 152 152 LEU LEU A . n A 1 39 ILE 39 153 153 ILE ILE A . n A 1 40 THR 40 154 154 THR THR A . n A 1 41 GLY 41 155 155 GLY GLY A . n A 1 42 ASP 42 156 156 ASP ASP A . n A 1 43 SER 43 157 157 SER SER A . n A 1 44 GLY 44 158 158 GLY GLY A . n A 1 45 VAL 45 159 159 VAL VAL A . n A 1 46 GLY 46 160 160 GLY GLY A . n A 1 47 LYS 47 161 161 LYS LYS A . n A 1 48 SER 48 162 162 SER SER A . n A 1 49 GLU 49 163 163 GLU GLU A . n A 1 50 THR 50 164 164 THR THR A . n A 1 51 ALA 51 165 165 ALA ALA A . n A 1 52 LEU 52 166 166 LEU LEU A . n A 1 53 GLU 53 167 167 GLU GLU A . n A 1 54 LEU 54 168 168 LEU LEU A . n A 1 55 VAL 55 169 169 VAL VAL A . n A 1 56 GLN 56 170 170 GLN GLN A . n A 1 57 ARG 57 171 171 ARG ARG A . n A 1 58 GLY 58 172 172 GLY GLY A . n A 1 59 HIS 59 173 173 HIS HIS A . n A 1 60 ARG 60 174 174 ARG ARG A . n A 1 61 LEU 61 175 175 LEU LEU A . n A 1 62 ILE 62 176 176 ILE ILE A . n A 1 63 ALA 63 177 177 ALA ALA A . n A 1 64 ASP 64 178 178 ASP ASP A . n A 1 65 ASP 65 179 179 ASP ASP A . n A 1 66 ARG 66 180 180 ARG ARG A . n A 1 67 VAL 67 181 181 VAL VAL A . n A 1 68 ASP 68 182 182 ASP ASP A . n A 1 69 VAL 69 183 183 VAL VAL A . n A 1 70 TYR 70 184 184 TYR ALA A . n A 1 71 GLN 71 185 185 GLN GLN A . n A 1 72 GLN 72 186 186 GLN GLN A . n A 1 73 ASP 73 187 187 ASP ASP A . n A 1 74 GLU 74 188 188 GLU GLU A . n A 1 75 GLN 75 189 189 GLN GLN A . n A 1 76 THR 76 190 190 THR THR A . n A 1 77 ILE 77 191 191 ILE ILE A . n A 1 78 VAL 78 192 192 VAL VAL A . n A 1 79 GLY 79 193 193 GLY GLY A . n A 1 80 ALA 80 194 194 ALA ALA A . n A 1 81 ALA 81 195 195 ALA ALA A . n A 1 82 PRO 82 196 196 PRO PRO A . n A 1 83 PRO 83 197 197 PRO PRO A . n A 1 84 ILE 84 198 198 ILE ILE A . n A 1 85 LEU 85 199 199 LEU LEU A . n A 1 86 SER 86 200 200 SER SER A . n A 1 87 HIS 87 201 201 HIS HIS A . n A 1 88 LEU 88 202 202 LEU LEU A . n A 1 89 LEU 89 203 203 LEU LEU A . n A 1 90 GLU 90 204 204 GLU ALA A . n A 1 91 ILE 91 205 205 ILE ILE A . n A 1 92 ARG 92 206 206 ARG ALA A . n A 1 93 GLY 93 207 207 GLY GLY A . n A 1 94 LEU 94 208 208 LEU LEU A . n A 1 95 GLY 95 209 209 GLY GLY A . n A 1 96 ILE 96 210 210 ILE ILE A . n A 1 97 ILE 97 211 211 ILE ILE A . n A 1 98 ASP 98 212 212 ASP ASP A . n A 1 99 VAL 99 213 213 VAL VAL A . n A 1 100 MSE 100 214 214 MSE MSE A . n A 1 101 ASN 101 215 215 ASN ASN A . n A 1 102 LEU 102 216 216 LEU LEU A . n A 1 103 PHE 103 217 217 PHE PHE A . n A 1 104 GLY 104 218 218 GLY GLY A . n A 1 105 ALA 105 219 219 ALA ALA A . n A 1 106 GLY 106 220 220 GLY GLY A . n A 1 107 ALA 107 221 221 ALA ALA A . n A 1 108 VAL 108 222 222 VAL VAL A . n A 1 109 ARG 109 223 223 ARG ARG A . n A 1 110 GLU 110 224 224 GLU GLU A . n A 1 111 ASP 111 225 225 ASP ASP A . n A 1 112 THR 112 226 226 THR THR A . n A 1 113 THR 113 227 227 THR THR A . n A 1 114 ILE 114 228 228 ILE ILE A . n A 1 115 SER 115 229 229 SER SER A . n A 1 116 LEU 116 230 230 LEU LEU A . n A 1 117 ILE 117 231 231 ILE ILE A . n A 1 118 VAL 118 232 232 VAL VAL A . n A 1 119 HIS 119 233 233 HIS HIS A . n A 1 120 LEU 120 234 234 LEU LEU A . n A 1 121 GLU 121 235 235 GLU GLU A . n A 1 122 ASN 122 236 236 ASN ASN A . n A 1 123 TRP 123 237 237 TRP TRP A . n A 1 124 THR 124 238 238 THR THR A . n A 1 125 PRO 125 239 239 PRO ALA A . n A 1 126 ASP 126 240 240 ASP ALA A . n A 1 127 LYS 127 241 ? ? ? A . n A 1 128 THR 128 242 ? ? ? A . n A 1 129 PHE 129 243 ? ? ? A . n A 1 130 ASP 130 244 ? ? ? A . n A 1 131 ARG 131 245 ? ? ? A . n A 1 132 LEU 132 246 ? ? ? A . n A 1 133 GLY 133 247 ? ? ? A . n A 1 134 SER 134 248 ? ? ? A . n A 1 135 GLY 135 249 ? ? ? A . n A 1 136 GLU 136 250 ? ? ? A . n A 1 137 GLN 137 251 ? ? ? A . n A 1 138 THR 138 252 ? ? ? A . n A 1 139 GLN 139 253 253 GLN GLN A . n A 1 140 LEU 140 254 254 LEU ALA A . n A 1 141 ILE 141 255 255 ILE ILE A . n A 1 142 PHE 142 256 256 PHE ALA A . n A 1 143 ASP 143 257 257 ASP ALA A . n A 1 144 VAL 144 258 258 VAL VAL A . n A 1 145 PRO 145 259 259 PRO PRO A . n A 1 146 VAL 146 260 260 VAL VAL A . n A 1 147 PRO 147 261 261 PRO PRO A . n A 1 148 LYS 148 262 262 LYS LYS A . n A 1 149 ILE 149 263 263 ILE ILE A . n A 1 150 THR 150 264 264 THR THR A . n A 1 151 VAL 151 265 265 VAL VAL A . n A 1 152 PRO 152 266 266 PRO PRO A . n A 1 153 VAL 153 267 267 VAL VAL A . n A 1 154 LYS 154 268 268 LYS ALA A . n A 1 155 VAL 155 269 269 VAL VAL A . n A 1 156 GLY 156 270 270 GLY GLY A . n A 1 157 ARG 157 271 271 ARG ALA A . n A 1 158 ASN 158 272 272 ASN ASN A . n A 1 159 LEU 159 273 273 LEU LEU A . n A 1 160 ALA 160 274 274 ALA ALA A . n A 1 161 ILE 161 275 275 ILE ILE A . n A 1 162 ILE 162 276 276 ILE ILE A . n A 1 163 ILE 163 277 277 ILE ILE A . n A 1 164 GLU 164 278 278 GLU GLU A . n A 1 165 VAL 165 279 279 VAL VAL A . n A 1 166 ALA 166 280 280 ALA ALA A . n A 1 167 ALA 167 281 281 ALA ALA A . n A 1 168 MSE 168 282 282 MSE MSE A . n A 1 169 ASN 169 283 283 ASN ASN A . n A 1 170 PHE 170 284 284 PHE PHE A . n A 1 171 ARG 171 285 285 ARG ARG A . n A 1 172 ALA 172 286 286 ALA ALA A . n A 1 173 LYS 173 287 287 LYS LYS A . n A 1 174 SER 174 288 288 SER SER A . n A 1 175 MSE 175 289 289 MSE MSE A . n A 1 176 GLY 176 290 290 GLY GLY A . n A 1 177 TYR 177 291 291 TYR TYR A . n A 1 178 ASP 178 292 292 ASP ASP A . n A 1 179 ALA 179 293 293 ALA ALA A . n A 1 180 THR 180 294 294 THR THR A . n A 1 181 LYS 181 295 295 LYS LYS A . n A 1 182 THR 182 296 296 THR THR A . n A 1 183 PHE 183 297 297 PHE PHE A . n A 1 184 GLU 184 298 298 GLU ALA A . n A 1 185 LYS 185 299 299 LYS LYS A . n A 1 186 ASN 186 300 300 ASN ASN A . n A 1 187 LEU 187 301 301 LEU LEU A . n A 1 188 ASN 188 302 302 ASN ASN A . n A 1 189 HIS 189 303 303 HIS HIS A . n A 1 190 LEU 190 304 304 LEU LEU A . n A 1 191 ILE 191 305 305 ILE ILE A . n A 1 192 GLU 192 306 306 GLU GLU A . n A 1 193 HIS 193 307 307 HIS ALA A . n A 1 194 ASN 194 308 ? ? ? A . n A 1 195 GLU 195 309 ? ? ? A . n A 1 196 GLU 196 310 ? ? ? A . n A 1 197 THR 197 311 ? ? ? A . n A 1 198 ASP 198 312 ? ? ? A . n A 1 199 GLN 199 313 ? ? ? A . n A 1 200 ASN 200 314 ? ? ? A . n A 1 201 SER 201 315 ? ? ? A . n A 1 202 SER 202 316 ? ? ? A . n A 1 203 GLY 203 317 ? ? ? A . n A 1 204 ASP 204 318 ? ? ? A . n A 1 205 LYS 205 319 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 1 400 400 PO4 PO4 A . C 3 HOH 1 401 401 HOH HOH A . C 3 HOH 2 402 402 HOH HOH A . C 3 HOH 3 403 403 HOH HOH A . C 3 HOH 4 404 404 HOH HOH A . C 3 HOH 5 405 405 HOH HOH A . C 3 HOH 6 406 406 HOH HOH A . C 3 HOH 7 407 407 HOH HOH A . C 3 HOH 8 408 408 HOH HOH A . C 3 HOH 9 410 410 HOH HOH A . C 3 HOH 10 411 411 HOH HOH A . C 3 HOH 11 412 412 HOH HOH A . C 3 HOH 12 413 413 HOH HOH A . C 3 HOH 13 414 414 HOH HOH A . C 3 HOH 14 415 415 HOH HOH A . C 3 HOH 15 416 416 HOH HOH A . C 3 HOH 16 417 417 HOH HOH A . C 3 HOH 17 418 418 HOH HOH A . C 3 HOH 18 419 419 HOH HOH A . C 3 HOH 19 420 420 HOH HOH A . C 3 HOH 20 421 421 HOH HOH A . C 3 HOH 21 422 422 HOH HOH A . C 3 HOH 22 423 423 HOH HOH A . C 3 HOH 23 424 424 HOH HOH A . C 3 HOH 24 425 425 HOH HOH A . C 3 HOH 25 426 426 HOH HOH A . C 3 HOH 26 427 427 HOH HOH A . C 3 HOH 27 428 428 HOH HOH A . C 3 HOH 28 429 429 HOH HOH A . C 3 HOH 29 430 430 HOH HOH A . C 3 HOH 30 431 431 HOH HOH A . C 3 HOH 31 432 432 HOH HOH A . C 3 HOH 32 433 433 HOH HOH A . C 3 HOH 33 434 434 HOH HOH A . C 3 HOH 34 435 435 HOH HOH A . C 3 HOH 35 436 436 HOH HOH A . C 3 HOH 36 437 437 HOH HOH A . C 3 HOH 37 438 438 HOH HOH A . C 3 HOH 38 439 439 HOH HOH A . C 3 HOH 39 440 440 HOH HOH A . C 3 HOH 40 441 441 HOH HOH A . C 3 HOH 41 442 442 HOH HOH A . C 3 HOH 42 443 443 HOH HOH A . C 3 HOH 43 444 444 HOH HOH A . C 3 HOH 44 445 445 HOH HOH A . C 3 HOH 45 446 446 HOH HOH A . C 3 HOH 46 447 447 HOH HOH A . C 3 HOH 47 448 448 HOH HOH A . C 3 HOH 48 449 449 HOH HOH A . C 3 HOH 49 450 450 HOH HOH A . C 3 HOH 50 451 451 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 25 A MSE 139 ? MET SELENOMETHIONINE 2 A MSE 100 A MSE 214 ? MET SELENOMETHIONINE 3 A MSE 168 A MSE 282 ? MET SELENOMETHIONINE 4 A MSE 175 A MSE 289 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 17800 ? 1 MORE -176 ? 1 'SSA (A^2)' 41040 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5000000000 -0.8660254038 0.0000000000 107.7380000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5000000000 0.8660254038 0.0000000000 53.8690000000 -0.8660254038 -0.5000000000 0.0000000000 93.3038449529 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/2 0.5000000000 -0.8660254038 0.0000000000 53.8690000000 -0.8660254038 -0.5000000000 0.0000000000 93.3038449529 0.0000000000 0.0000000000 -1.0000000000 33.2490000000 5 'crystal symmetry operation' 11_655 -x+y+1,y,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 107.7380000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 33.2490000000 6 'crystal symmetry operation' 12_555 x,x-y,-z+1/2 0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 33.2490000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 439 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2001-08-08 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-04 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 4 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALA 'data scaling' . ? 2 MADSYS phasing . ? 3 CNS refinement 1.0 ? 4 CCP4 'data scaling' '(SCALA)' ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 156 ? ? -35.13 130.51 2 1 ASP A 179 ? ? 72.72 -44.80 3 1 ASP A 187 ? ? -110.78 -156.25 4 1 ARG A 206 ? ? -44.64 105.49 5 1 GLU A 235 ? ? -116.03 -149.24 6 1 ASN A 236 ? ? -130.96 -89.37 7 1 THR A 238 ? ? -170.98 -129.90 8 1 LEU A 254 ? ? -71.21 -168.68 9 1 ILE A 255 ? ? -162.26 -167.06 10 1 ASP A 257 ? ? -6.95 70.80 11 1 VAL A 258 ? ? 104.97 48.07 12 1 PRO A 259 ? ? 23.03 84.23 13 1 PRO A 261 ? ? -37.01 130.75 14 1 VAL A 269 ? ? -37.83 139.65 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 137 ? CG ? A ARG 23 CG 2 1 Y 1 A ARG 137 ? CD ? A ARG 23 CD 3 1 Y 1 A ARG 137 ? NE ? A ARG 23 NE 4 1 Y 1 A ARG 137 ? CZ ? A ARG 23 CZ 5 1 Y 1 A ARG 137 ? NH1 ? A ARG 23 NH1 6 1 Y 1 A ARG 137 ? NH2 ? A ARG 23 NH2 7 1 Y 1 A HIS 140 ? CG ? A HIS 26 CG 8 1 Y 1 A HIS 140 ? ND1 ? A HIS 26 ND1 9 1 Y 1 A HIS 140 ? CD2 ? A HIS 26 CD2 10 1 Y 1 A HIS 140 ? CE1 ? A HIS 26 CE1 11 1 Y 1 A HIS 140 ? NE2 ? A HIS 26 NE2 12 1 Y 1 A TYR 184 ? CG ? A TYR 70 CG 13 1 Y 1 A TYR 184 ? CD1 ? A TYR 70 CD1 14 1 Y 1 A TYR 184 ? CD2 ? A TYR 70 CD2 15 1 Y 1 A TYR 184 ? CE1 ? A TYR 70 CE1 16 1 Y 1 A TYR 184 ? CE2 ? A TYR 70 CE2 17 1 Y 1 A TYR 184 ? CZ ? A TYR 70 CZ 18 1 Y 1 A TYR 184 ? OH ? A TYR 70 OH 19 1 Y 1 A GLU 204 ? CG ? A GLU 90 CG 20 1 Y 1 A GLU 204 ? CD ? A GLU 90 CD 21 1 Y 1 A GLU 204 ? OE1 ? A GLU 90 OE1 22 1 Y 1 A GLU 204 ? OE2 ? A GLU 90 OE2 23 1 Y 1 A ARG 206 ? CG ? A ARG 92 CG 24 1 Y 1 A ARG 206 ? CD ? A ARG 92 CD 25 1 Y 1 A ARG 206 ? NE ? A ARG 92 NE 26 1 Y 1 A ARG 206 ? CZ ? A ARG 92 CZ 27 1 Y 1 A ARG 206 ? NH1 ? A ARG 92 NH1 28 1 Y 1 A ARG 206 ? NH2 ? A ARG 92 NH2 29 1 Y 1 A PRO 239 ? CG ? A PRO 125 CG 30 1 Y 1 A PRO 239 ? CD ? A PRO 125 CD 31 1 Y 1 A ASP 240 ? CG ? A ASP 126 CG 32 1 Y 1 A ASP 240 ? OD1 ? A ASP 126 OD1 33 1 Y 1 A ASP 240 ? OD2 ? A ASP 126 OD2 34 1 Y 1 A LEU 254 ? CG ? A LEU 140 CG 35 1 Y 1 A LEU 254 ? CD1 ? A LEU 140 CD1 36 1 Y 1 A LEU 254 ? CD2 ? A LEU 140 CD2 37 1 Y 1 A PHE 256 ? CG ? A PHE 142 CG 38 1 Y 1 A PHE 256 ? CD1 ? A PHE 142 CD1 39 1 Y 1 A PHE 256 ? CD2 ? A PHE 142 CD2 40 1 Y 1 A PHE 256 ? CE1 ? A PHE 142 CE1 41 1 Y 1 A PHE 256 ? CE2 ? A PHE 142 CE2 42 1 Y 1 A PHE 256 ? CZ ? A PHE 142 CZ 43 1 Y 1 A ASP 257 ? CG ? A ASP 143 CG 44 1 Y 1 A ASP 257 ? OD1 ? A ASP 143 OD1 45 1 Y 1 A ASP 257 ? OD2 ? A ASP 143 OD2 46 1 Y 1 A LYS 268 ? CG ? A LYS 154 CG 47 1 Y 1 A LYS 268 ? CD ? A LYS 154 CD 48 1 Y 1 A LYS 268 ? CE ? A LYS 154 CE 49 1 Y 1 A LYS 268 ? NZ ? A LYS 154 NZ 50 1 Y 1 A ARG 271 ? CG ? A ARG 157 CG 51 1 Y 1 A ARG 271 ? CD ? A ARG 157 CD 52 1 Y 1 A ARG 271 ? NE ? A ARG 157 NE 53 1 Y 1 A ARG 271 ? CZ ? A ARG 157 CZ 54 1 Y 1 A ARG 271 ? NH1 ? A ARG 157 NH1 55 1 Y 1 A ARG 271 ? NH2 ? A ARG 157 NH2 56 1 Y 1 A GLU 298 ? CG ? A GLU 184 CG 57 1 Y 1 A GLU 298 ? CD ? A GLU 184 CD 58 1 Y 1 A GLU 298 ? OE1 ? A GLU 184 OE1 59 1 Y 1 A GLU 298 ? OE2 ? A GLU 184 OE2 60 1 Y 1 A HIS 307 ? CG ? A HIS 193 CG 61 1 Y 1 A HIS 307 ? ND1 ? A HIS 193 ND1 62 1 Y 1 A HIS 307 ? CD2 ? A HIS 193 CD2 63 1 Y 1 A HIS 307 ? CE1 ? A HIS 193 CE1 64 1 Y 1 A HIS 307 ? NE2 ? A HIS 193 NE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 115 ? A MSE 1 2 1 Y 1 A ARG 116 ? A ARG 2 3 1 Y 1 A GLY 117 ? A GLY 3 4 1 Y 1 A SER 118 ? A SER 4 5 1 Y 1 A HIS 119 ? A HIS 5 6 1 Y 1 A HIS 120 ? A HIS 6 7 1 Y 1 A HIS 121 ? A HIS 7 8 1 Y 1 A HIS 122 ? A HIS 8 9 1 Y 1 A HIS 123 ? A HIS 9 10 1 Y 1 A HIS 124 ? A HIS 10 11 1 Y 1 A GLY 125 ? A GLY 11 12 1 Y 1 A SER 126 ? A SER 12 13 1 Y 1 A MSE 127 ? A MSE 13 14 1 Y 1 A TYR 128 ? A TYR 14 15 1 Y 1 A LEU 129 ? A LEU 15 16 1 Y 1 A ASP 130 ? A ASP 16 17 1 Y 1 A SER 131 ? A SER 17 18 1 Y 1 A GLN 132 ? A GLN 18 19 1 Y 1 A LEU 133 ? A LEU 19 20 1 Y 1 A ALA 134 ? A ALA 20 21 1 Y 1 A LYS 241 ? A LYS 127 22 1 Y 1 A THR 242 ? A THR 128 23 1 Y 1 A PHE 243 ? A PHE 129 24 1 Y 1 A ASP 244 ? A ASP 130 25 1 Y 1 A ARG 245 ? A ARG 131 26 1 Y 1 A LEU 246 ? A LEU 132 27 1 Y 1 A GLY 247 ? A GLY 133 28 1 Y 1 A SER 248 ? A SER 134 29 1 Y 1 A GLY 249 ? A GLY 135 30 1 Y 1 A GLU 250 ? A GLU 136 31 1 Y 1 A GLN 251 ? A GLN 137 32 1 Y 1 A THR 252 ? A THR 138 33 1 Y 1 A ASN 308 ? A ASN 194 34 1 Y 1 A GLU 309 ? A GLU 195 35 1 Y 1 A GLU 310 ? A GLU 196 36 1 Y 1 A THR 311 ? A THR 197 37 1 Y 1 A ASP 312 ? A ASP 198 38 1 Y 1 A GLN 313 ? A GLN 199 39 1 Y 1 A ASN 314 ? A ASN 200 40 1 Y 1 A SER 315 ? A SER 201 41 1 Y 1 A SER 316 ? A SER 202 42 1 Y 1 A GLY 317 ? A GLY 203 43 1 Y 1 A ASP 318 ? A ASP 204 44 1 Y 1 A LYS 319 ? A LYS 205 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PHOSPHATE ION' PO4 3 water HOH #