data_1JUA # _entry.id 1JUA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1JUA pdb_00001jua 10.2210/pdb1jua/pdb RCSB RCSB014193 ? ? WWPDB D_1000014193 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1JTJ 'Solution structure of HIV-1Lai mutated SL1 hairpin' unspecified PDB 1JU0 'NMR solution structure of a DNA kissing complex' unspecified PDB 1JU1 'Dimer initiation sequence of HIV-1Lai genomic RNA : NMR solution structure of the extended duplex' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1JUA _pdbx_database_status.recvd_initial_deposition_date 2001-08-24 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Barbault, F.' 1 'Huynh-Dinh, T.' 2 'Paoletti, J.' 3 'Lancelot, G.' 4 # _citation.id primary _citation.title 'A new peculiar DNA structure: NMR solution structure of a DNA kissing complex.' _citation.journal_abbrev J.Biomol.Struct.Dyn. _citation.journal_volume 19 _citation.page_first 649 _citation.page_last 658 _citation.year 2002 _citation.journal_id_ASTM JBSDD6 _citation.country US _citation.journal_id_ISSN 0739-1102 _citation.journal_id_CSD 0646 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11843626 _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Barbault, F.' 1 ? primary 'Huynh-Dinh, T.' 2 ? primary 'Paoletti, J.' 3 ? primary 'Lancelot, G.' 4 ? # _cell.entry_id 1JUA _cell.length_a ? _cell.length_b ? _cell.length_c ? _cell.angle_alpha ? _cell.angle_beta ? _cell.angle_gamma ? _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description "5'-D(*CP*TP*TP*GP*CP*TP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP*CP*AP*AP*G)-3'" _entity.formula_weight 7091.574 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details 'dSL1 stable dimer' # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;(DC)(DT)(DT)(DG)(DC)(DT)(DG)(DA)(DA)(DG)(DC)(DG)(DC)(DG)(DC)(DA)(DC)(DG)(DG)(DC) (DA)(DA)(DG) ; _entity_poly.pdbx_seq_one_letter_code_can CTTGCTGAAGCGCGCACGGCAAG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DT n 1 3 DT n 1 4 DG n 1 5 DC n 1 6 DT n 1 7 DG n 1 8 DA n 1 9 DA n 1 10 DG n 1 11 DC n 1 12 DG n 1 13 DC n 1 14 DG n 1 15 DC n 1 16 DA n 1 17 DC n 1 18 DG n 1 19 DG n 1 20 DC n 1 21 DA n 1 22 DA n 1 23 DG n # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1JUA _struct_ref.pdbx_db_accession 1JUA _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1JUA A 1 ? 23 ? 1JUA 1 ? 23 ? 1 23 2 1 1JUA B 1 ? 23 ? 1JUA 1 ? 23 ? 1 23 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 '2D NOESY' 2 2 2 '2D NOESY' 3 2 2 DQF-COSY # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 278 ambient 5.8 '50mM NaCl' ? K 2 300 ambient 5.8 '50mM NaCl' ? K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 ;2.7mM oligonucleotide 10 mM phosphate buffer 50 mM NaCl ; '90% H2O/10% D2O' 2 ;2.7mM oligonucleotide 10 mM phosphate buffer 50 mM NaCl ; '100% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.field_strength 600 # _pdbx_nmr_refine.entry_id 1JUA _pdbx_nmr_refine.method ;Simulated annealing Relaxation matrix refinement Chemical shifts back-calculation refinement ; _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1JUA _pdbx_nmr_details.text 'This structure was determined using standard 2D homonuclear techniques.' # _pdbx_nmr_ensemble.entry_id 1JUA _pdbx_nmr_ensemble.conformers_calculated_total_number 13 _pdbx_nmr_ensemble.conformers_submitted_total_number 13 _pdbx_nmr_ensemble.conformer_selection_criteria ;back calculated data agree with experimental NOESY spectrum, structures with acceptable covalent geometry, structures with the least restraint violations, structures with the lowest energy ; _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1JUA _pdbx_nmr_representative.conformer_id 9 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal VNMR ? collection ? 1 VNMR ? processing ? 2 CNS 1.0 'structure solution' Brunger 3 RELAZ 1.0 'iterative matrix relaxation' Lancelot 4 NUCHEMICS ? refinement Wijmenga 5 # _exptl.entry_id 1JUA _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1JUA _struct.title 'Solution Structure of the Deoxyribose HIV-1Lai Initiation Sequence Stable Dimer' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1JUA _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'HIV, SL1, DNA, kissing-complex, loop-loop dimer, stable dimer' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 23 N1 ? ? A DC 1 A DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 23 O6 ? ? A DC 1 A DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 23 N2 ? ? A DC 1 A DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 N3 ? ? ? 1_555 A DA 22 N1 ? ? A DT 2 A DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 2 O4 ? ? ? 1_555 A DA 22 N6 ? ? A DT 2 A DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 3 N3 ? ? ? 1_555 A DA 21 N1 ? ? A DT 3 A DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 O4 ? ? ? 1_555 A DA 21 N6 ? ? A DT 3 A DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 3 N3 ? ? ? 1_555 A DA 22 N1 ? ? A DT 3 A DA 22 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DC 20 N3 ? ? A DG 4 A DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DC 20 O2 ? ? A DG 4 A DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DC 20 N4 ? ? A DG 4 A DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 19 N1 ? ? A DC 5 A DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 19 O6 ? ? A DC 5 A DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 19 N2 ? ? A DC 5 A DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 6 N3 ? ? ? 1_555 A DG 18 O6 ? ? A DT 6 A DG 18 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog16 hydrog ? ? A DT 6 O2 ? ? ? 1_555 A DG 18 N1 ? ? A DT 6 A DG 18 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog17 hydrog ? ? A DG 7 N1 ? ? ? 1_555 A DC 17 N3 ? ? A DG 7 A DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 7 N2 ? ? ? 1_555 A DC 17 O2 ? ? A DG 7 A DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 7 O6 ? ? ? 1_555 A DC 17 N4 ? ? A DG 7 A DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 8 N3 ? ? ? 1_555 B DC 15 N4 ? ? A DA 8 B DC 15 1_555 ? ? ? ? ? ? 'DA-DC MISPAIR' ? ? ? hydrog21 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 15 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 15 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 15 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 14 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 14 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 14 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 13 N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 13 O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 13 N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DC 13 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 13 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DC 13 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 13 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DC 13 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 13 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DG 14 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 14 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DG 14 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 14 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DG 14 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 14 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DC 15 N4 ? ? ? 1_555 B DA 8 N3 ? ? A DC 15 B DA 8 1_555 ? ? ? ? ? ? 'DC-DA MISPAIR' ? ? ? hydrog37 hydrog ? ? A DC 15 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 15 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DC 15 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 15 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DC 15 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 15 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DA 16 N1 ? ? ? 1_555 B DA 9 N6 ? ? A DA 16 B DA 9 1_555 ? ? ? ? ? ? 'DA-DA MISPAIR' ? ? ? hydrog41 hydrog ? ? B DC 1 N3 ? ? ? 1_555 B DG 23 N1 ? ? B DC 1 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? B DC 1 N4 ? ? ? 1_555 B DG 23 O6 ? ? B DC 1 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? B DC 1 O2 ? ? ? 1_555 B DG 23 N2 ? ? B DC 1 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? B DT 2 N3 ? ? ? 1_555 B DA 22 N1 ? ? B DT 2 B DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? B DT 2 O4 ? ? ? 1_555 B DA 22 N6 ? ? B DT 2 B DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? B DT 3 N3 ? ? ? 1_555 B DA 21 N1 ? ? B DT 3 B DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? B DT 3 O4 ? ? ? 1_555 B DA 21 N6 ? ? B DT 3 B DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? B DT 3 N3 ? ? ? 1_555 B DA 22 N1 ? ? B DT 3 B DA 22 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog49 hydrog ? ? B DG 4 N1 ? ? ? 1_555 B DC 20 N3 ? ? B DG 4 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? B DG 4 N2 ? ? ? 1_555 B DC 20 O2 ? ? B DG 4 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? B DG 4 O6 ? ? ? 1_555 B DC 20 N4 ? ? B DG 4 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? B DC 5 N3 ? ? ? 1_555 B DG 19 N1 ? ? B DC 5 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? B DC 5 N4 ? ? ? 1_555 B DG 19 O6 ? ? B DC 5 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? B DC 5 O2 ? ? ? 1_555 B DG 19 N2 ? ? B DC 5 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? B DT 6 N3 ? ? ? 1_555 B DG 18 O6 ? ? B DT 6 B DG 18 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog56 hydrog ? ? B DT 6 O2 ? ? ? 1_555 B DG 18 N1 ? ? B DT 6 B DG 18 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog57 hydrog ? ? B DG 7 N1 ? ? ? 1_555 B DC 17 N3 ? ? B DG 7 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? B DG 7 N2 ? ? ? 1_555 B DC 17 O2 ? ? B DG 7 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? B DG 7 O6 ? ? ? 1_555 B DC 17 N4 ? ? B DG 7 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 1JUA _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1JUA _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC CYT A . n A 1 2 DT 2 2 2 DT THY A . n A 1 3 DT 3 3 3 DT THY A . n A 1 4 DG 4 4 4 DG GUA A . n A 1 5 DC 5 5 5 DC CYT A . n A 1 6 DT 6 6 6 DT THY A . n A 1 7 DG 7 7 7 DG GUA A . n A 1 8 DA 8 8 8 DA ADE A . n A 1 9 DA 9 9 9 DA ADE A . n A 1 10 DG 10 10 10 DG GUA A . n A 1 11 DC 11 11 11 DC CYT A . n A 1 12 DG 12 12 12 DG GUA A . n A 1 13 DC 13 13 13 DC CYT A . n A 1 14 DG 14 14 14 DG GUA A . n A 1 15 DC 15 15 15 DC CYT A . n A 1 16 DA 16 16 16 DA ADE A . n A 1 17 DC 17 17 17 DC CYT A . n A 1 18 DG 18 18 18 DG GUA A . n A 1 19 DG 19 19 19 DG GUA A . n A 1 20 DC 20 20 20 DC CYT A . n A 1 21 DA 21 21 21 DA ADE A . n A 1 22 DA 22 22 22 DA ADE A . n A 1 23 DG 23 23 23 DG GUA A . n B 1 1 DC 1 1 1 DC CYT B . n B 1 2 DT 2 2 2 DT THY B . n B 1 3 DT 3 3 3 DT THY B . n B 1 4 DG 4 4 4 DG GUA B . n B 1 5 DC 5 5 5 DC CYT B . n B 1 6 DT 6 6 6 DT THY B . n B 1 7 DG 7 7 7 DG GUA B . n B 1 8 DA 8 8 8 DA ADE B . n B 1 9 DA 9 9 9 DA ADE B . n B 1 10 DG 10 10 10 DG GUA B . n B 1 11 DC 11 11 11 DC CYT B . n B 1 12 DG 12 12 12 DG GUA B . n B 1 13 DC 13 13 13 DC CYT B . n B 1 14 DG 14 14 14 DG GUA B . n B 1 15 DC 15 15 15 DC CYT B . n B 1 16 DA 16 16 16 DA ADE B . n B 1 17 DC 17 17 17 DC CYT B . n B 1 18 DG 18 18 18 DG GUA B . n B 1 19 DG 19 19 19 DG GUA B . n B 1 20 DC 20 20 20 DC CYT B . n B 1 21 DA 21 21 21 DA ADE B . n B 1 22 DA 22 22 22 DA ADE B . n B 1 23 DG 23 23 23 DG GUA B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-01-20 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O4 A DT 2 ? ? H61 A DA 22 ? ? 1.58 2 1 O4 B DT 2 ? ? H61 B DA 22 ? ? 1.58 3 2 O4 B DT 2 ? ? H61 B DA 22 ? ? 1.58 4 3 O4 A DT 2 ? ? H61 A DA 22 ? ? 1.59 5 4 O4 A DT 2 ? ? H61 A DA 22 ? ? 1.58 6 5 O4 A DT 2 ? ? H61 A DA 22 ? ? 1.58 7 6 O4 B DT 2 ? ? H61 B DA 22 ? ? 1.58 8 6 O4 A DT 2 ? ? H61 A DA 22 ? ? 1.58 9 7 O4 B DT 2 ? ? H61 B DA 22 ? ? 1.58 10 7 O4 A DT 2 ? ? H61 A DA 22 ? ? 1.58 11 9 H1 A DG 7 ? ? H41 A DC 17 ? ? 0.91 12 9 H1 B DG 7 ? ? H41 B DC 17 ? ? 0.93 13 9 H41 B DC 1 ? ? H1 B DG 23 ? ? 1.01 14 9 H41 A DC 1 ? ? H1 A DG 23 ? ? 1.01 15 9 H41 A DC 13 ? ? H1 B DG 12 ? ? 1.02 16 9 H1 A DG 12 ? ? H41 B DC 13 ? ? 1.03 17 9 H1 B DG 4 ? ? H41 B DC 20 ? ? 1.12 18 9 H1 A DG 4 ? ? H41 A DC 20 ? ? 1.13 19 9 H41 A DC 11 ? ? H1 B DG 14 ? ? 1.19 20 9 H1 A DG 14 ? ? H41 B DC 11 ? ? 1.22 21 9 H61 A DA 9 ? ? H61 B DA 16 ? ? 1.27 22 9 H61 A DA 16 ? ? H61 B DA 9 ? ? 1.27 23 9 H3 A DT 3 ? ? H61 A DA 21 ? ? 1.28 24 9 H3 B DT 3 ? ? H61 B DA 21 ? ? 1.28 25 9 H41 B DC 5 ? ? H1 B DG 19 ? ? 1.29 26 9 H41 A DC 5 ? ? H1 A DG 19 ? ? 1.30 27 9 N3 A DC 13 ? ? H21 B DG 12 ? ? 1.36 28 9 H21 A DG 12 ? ? N3 B DC 13 ? ? 1.36 29 9 N3 B DC 1 ? ? H21 B DG 23 ? ? 1.37 30 9 N3 A DC 1 ? ? H21 A DG 23 ? ? 1.37 31 9 H21 A DG 4 ? ? N3 A DC 20 ? ? 1.39 32 9 H21 A DG 7 ? ? N3 A DC 17 ? ? 1.39 33 9 H21 B DG 4 ? ? N3 B DC 20 ? ? 1.39 34 9 H21 B DG 7 ? ? N3 B DC 17 ? ? 1.39 35 9 H21 A DG 10 ? ? N3 B DC 15 ? ? 1.41 36 9 N3 A DC 15 ? ? H21 B DG 10 ? ? 1.43 37 9 N3 B DC 5 ? ? H21 B DG 19 ? ? 1.44 38 9 N3 A DC 5 ? ? H21 A DG 19 ? ? 1.44 39 9 N3 A DC 11 ? ? H21 B DG 14 ? ? 1.50 40 9 H21 A DG 14 ? ? N3 B DC 11 ? ? 1.50 41 9 H41 B DC 1 ? ? N1 B DG 23 ? ? 1.51 42 9 H41 A DC 1 ? ? N1 A DG 23 ? ? 1.51 43 9 H41 A DC 13 ? ? N1 B DG 12 ? ? 1.52 44 9 N1 A DG 7 ? ? H41 A DC 17 ? ? 1.52 45 9 N1 A DG 12 ? ? H41 B DC 13 ? ? 1.52 46 9 N1 B DG 7 ? ? H41 B DC 17 ? ? 1.52 47 9 N1 B DG 4 ? ? H41 B DC 20 ? ? 1.55 48 9 N1 A DG 4 ? ? H41 A DC 20 ? ? 1.55 49 9 O6 A DG 14 ? ? N1 B DA 8 ? ? 2.05 50 9 N1 A DA 8 ? ? O6 B DG 14 ? ? 2.12 51 9 N2 A DG 10 ? ? N3 B DC 15 ? ? 2.18 52 9 N3 A DC 15 ? ? N2 B DG 10 ? ? 2.19 53 10 O4 A DT 2 ? ? H61 A DA 22 ? ? 1.58 54 11 O4 B DT 2 ? ? H61 B DA 22 ? ? 1.58 55 12 O4 B DT 2 ? ? H61 B DA 22 ? ? 1.58 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 9 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 110.59 108.30 2.29 0.30 N 2 9 "O4'" A DC 13 ? ? "C1'" A DC 13 ? ? N1 A DC 13 ? ? 111.02 108.30 2.72 0.30 N 3 9 "O4'" A DC 15 ? ? "C1'" A DC 15 ? ? N1 A DC 15 ? ? 110.33 108.30 2.03 0.30 N 4 9 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 110.63 108.30 2.33 0.30 N 5 9 "O4'" B DC 13 ? ? "C1'" B DC 13 ? ? N1 B DC 13 ? ? 111.01 108.30 2.71 0.30 N 6 9 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 110.41 108.30 2.11 0.30 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 9 DC A 11 ? ? 0.081 'SIDE CHAIN' 2 9 DG A 12 ? ? 0.067 'SIDE CHAIN' 3 9 DC A 13 ? ? 0.112 'SIDE CHAIN' 4 9 DC B 11 ? ? 0.084 'SIDE CHAIN' 5 9 DG B 12 ? ? 0.069 'SIDE CHAIN' 6 9 DC B 13 ? ? 0.112 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1JUA 'double helix' 1JUA 'b-form double helix' 1JUA 'mismatched base pair' 1JUA 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 A DG 23 1_555 -0.317 -0.212 -0.770 -0.459 -6.666 -0.869 1 A_DC1:DG23_A A 1 ? A 23 ? 19 1 1 A DT 2 1_555 A DA 22 1_555 0.375 -0.141 -0.670 -0.792 -10.596 -18.829 2 A_DT2:DA22_A A 2 ? A 22 ? 20 1 1 A DT 3 1_555 A DA 21 1_555 0.679 -0.239 -1.103 5.682 -9.867 -19.687 3 A_DT3:DA21_A A 3 ? A 21 ? 20 1 1 A DG 4 1_555 A DC 20 1_555 0.549 -0.417 -1.387 -4.781 -0.289 -2.240 4 A_DG4:DC20_A A 4 ? A 20 ? 19 1 1 A DC 5 1_555 A DG 19 1_555 -0.595 -0.600 -1.796 4.618 -3.574 -1.845 5 A_DC5:DG19_A A 5 ? A 19 ? 19 1 1 A DT 6 1_555 A DG 18 1_555 2.048 -0.224 -0.682 2.687 -1.396 2.804 6 A_DT6:DG18_A A 6 ? A 18 ? 28 1 1 A DG 7 1_555 A DC 17 1_555 0.034 -0.055 0.111 1.063 -8.478 1.194 7 A_DG7:DC17_A A 7 ? A 17 ? 19 1 1 B DA 9 1_555 A DA 16 1_555 -1.134 0.116 1.658 26.687 50.625 33.659 8 B_DA9:DA16_A B 9 ? A 16 ? ? 1 1 B DG 10 1_555 A DC 15 1_555 0.487 -0.605 1.574 4.426 19.771 3.049 9 B_DG10:DC15_A B 10 ? A 15 ? 19 1 1 B DC 11 1_555 A DG 14 1_555 -0.313 -0.197 -1.207 1.288 19.524 -0.314 10 B_DC11:DG14_A B 11 ? A 14 ? 19 1 1 B DG 12 1_555 A DC 13 1_555 -0.073 -0.104 -0.815 3.171 23.743 -0.206 11 B_DG12:DC13_A B 12 ? A 13 ? 19 1 1 B DC 13 1_555 A DG 12 1_555 0.110 -0.105 -0.782 -3.556 23.769 -0.471 12 B_DC13:DG12_A B 13 ? A 12 ? 19 1 1 B DG 14 1_555 A DC 11 1_555 0.432 -0.189 -1.217 -1.082 19.691 -0.471 13 B_DG14:DC11_A B 14 ? A 11 ? 19 1 1 B DC 15 1_555 A DG 10 1_555 -0.418 -0.553 1.544 -6.793 21.097 3.300 14 B_DC15:DG10_A B 15 ? A 10 ? 19 1 1 B DC 1 1_555 B DG 23 1_555 -0.372 -0.232 -0.889 -0.283 -6.174 -1.255 15 B_DC1:DG23_B B 1 ? B 23 ? 19 1 1 B DT 2 1_555 B DA 22 1_555 0.370 -0.131 -0.674 -0.823 -10.473 -19.182 16 B_DT2:DA22_B B 2 ? B 22 ? 20 1 1 B DT 3 1_555 B DA 21 1_555 0.686 -0.231 -1.110 5.779 -9.946 -20.066 17 B_DT3:DA21_B B 3 ? B 21 ? 20 1 1 B DG 4 1_555 B DC 20 1_555 0.578 -0.410 -1.398 -5.002 -0.330 -2.202 18 B_DG4:DC20_B B 4 ? B 20 ? 19 1 1 B DC 5 1_555 B DG 19 1_555 -0.589 -0.580 -1.802 5.294 -2.758 -1.786 19 B_DC5:DG19_B B 5 ? B 19 ? 19 1 1 B DT 6 1_555 B DG 18 1_555 2.167 -0.258 -0.678 3.231 -2.841 4.346 20 B_DT6:DG18_B B 6 ? B 18 ? 28 1 1 B DG 7 1_555 B DC 17 1_555 0.087 -0.090 -0.366 0.866 -5.473 0.321 21 B_DG7:DC17_B B 7 ? B 17 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 A DG 23 1_555 A DT 2 1_555 A DA 22 1_555 -0.774 0.212 3.611 0.292 -0.060 42.024 0.303 1.112 3.605 -0.084 -0.407 42.025 1 AA_DC1DT2:DA22DG23_AA A 1 ? A 23 ? A 2 ? A 22 ? 1 A DT 2 1_555 A DA 22 1_555 A DT 3 1_555 A DA 21 1_555 0.114 -0.682 2.839 3.182 -3.644 36.680 -0.643 0.197 2.891 -5.760 -5.030 36.987 2 AA_DT2DT3:DA21DA22_AA A 2 ? A 22 ? A 3 ? A 21 ? 1 A DT 3 1_555 A DA 21 1_555 A DG 4 1_555 A DC 20 1_555 1.161 -0.617 4.268 0.326 -3.977 35.766 -0.253 -1.818 4.320 -6.450 -0.528 35.981 3 AA_DT3DG4:DC20DA21_AA A 3 ? A 21 ? A 4 ? A 20 ? 1 A DG 4 1_555 A DC 20 1_555 A DC 5 1_555 A DG 19 1_555 0.085 -0.201 2.882 2.606 5.642 35.681 -1.020 0.185 2.817 9.122 -4.214 36.201 4 AA_DG4DC5:DG19DC20_AA A 4 ? A 20 ? A 5 ? A 19 ? 1 A DC 5 1_555 A DG 19 1_555 A DT 6 1_555 A DG 18 1_555 0.455 0.230 3.799 -2.798 4.247 42.948 -0.170 -0.935 3.768 5.777 3.806 43.234 5 AA_DC5DT6:DG18DG19_AA A 5 ? A 19 ? A 6 ? A 18 ? 1 A DT 6 1_555 A DG 18 1_555 A DG 7 1_555 A DC 17 1_555 -0.154 -0.755 4.012 -1.371 -5.941 27.202 0.211 -0.090 4.084 -12.433 2.869 27.864 6 AA_DT6DG7:DC17DG18_AA A 6 ? A 18 ? A 7 ? A 17 ? 1 A DG 7 1_555 A DC 17 1_555 B DA 9 1_555 A DA 16 1_555 -2.127 -0.611 3.210 -5.821 33.067 58.853 -1.836 1.701 2.751 31.074 5.470 67.004 7 AB_DG7DA9:DA16DC17_AA A 7 ? A 17 ? B 9 ? A 16 ? 1 B DA 9 1_555 A DA 16 1_555 B DG 10 1_555 A DC 15 1_555 -1.773 1.894 4.781 12.732 34.888 36.521 -1.760 3.472 4.254 44.146 -16.111 51.630 8 BB_DA9DG10:DC15DA16_AA B 9 ? A 16 ? B 10 ? A 15 ? 1 B DG 10 1_555 A DC 15 1_555 B DC 11 1_555 A DG 14 1_555 -0.115 -1.313 4.812 9.343 17.687 13.572 -10.419 4.119 1.718 49.672 -26.240 24.134 9 BB_DG10DC11:DG14DC15_AA B 10 ? A 15 ? B 11 ? A 14 ? 1 B DC 11 1_555 A DG 14 1_555 B DG 12 1_555 A DC 13 1_555 -0.749 -1.163 4.163 -4.882 23.690 9.810 -9.609 0.211 0.664 66.841 13.773 26.074 10 BB_DC11DG12:DC13DG14_AA B 11 ? A 14 ? B 12 ? A 13 ? 1 B DG 12 1_555 A DC 13 1_555 B DC 13 1_555 A DG 12 1_555 0.016 -2.040 3.917 -0.079 32.675 12.038 -7.338 -0.036 -0.535 70.317 0.170 34.765 11 BB_DG12DC13:DG12DC13_AA B 12 ? A 13 ? B 13 ? A 12 ? 1 B DC 13 1_555 A DG 12 1_555 B DG 14 1_555 A DC 11 1_555 0.757 -1.171 4.141 5.272 23.834 9.851 -9.495 -0.132 0.655 66.736 -14.763 26.295 12 BB_DC13DG14:DC11DG12_AA B 13 ? A 12 ? B 14 ? A 11 ? 1 B DG 14 1_555 A DC 11 1_555 B DC 15 1_555 A DG 10 1_555 0.166 -1.298 5.005 -9.379 16.957 12.990 -11.039 -4.739 1.797 49.419 27.334 23.294 13 BB_DG14DC15:DG10DC11_AA B 14 ? A 11 ? B 15 ? A 10 ? 1 B DC 1 1_555 B DG 23 1_555 B DT 2 1_555 B DA 22 1_555 -0.791 0.216 3.643 -0.134 -0.300 42.280 0.334 1.081 3.644 -0.416 0.186 42.281 14 BB_DC1DT2:DA22DG23_BB B 1 ? B 23 ? B 2 ? B 22 ? 1 B DT 2 1_555 B DA 22 1_555 B DT 3 1_555 B DA 21 1_555 0.122 -0.682 2.822 3.197 -4.178 36.606 -0.583 0.186 2.880 -6.609 -5.058 36.969 15 BB_DT2DT3:DA21DA22_BB B 2 ? B 22 ? B 3 ? B 21 ? 1 B DT 3 1_555 B DA 21 1_555 B DG 4 1_555 B DC 20 1_555 1.204 -0.609 4.325 0.311 -5.809 36.203 0.098 -1.858 4.377 -9.275 -0.497 36.652 16 BB_DT3DG4:DC20DA21_BB B 3 ? B 21 ? B 4 ? B 20 ? 1 B DG 4 1_555 B DC 20 1_555 B DC 5 1_555 B DG 19 1_555 0.060 -0.167 2.885 2.674 4.648 35.619 -0.852 0.237 2.838 7.545 -4.340 36.007 17 BB_DG4DC5:DG19DC20_BB B 4 ? B 20 ? B 5 ? B 19 ? 1 B DC 5 1_555 B DG 19 1_555 B DT 6 1_555 B DG 18 1_555 0.550 0.278 3.870 -2.708 2.077 43.878 0.140 -1.035 3.839 2.775 3.618 44.004 18 BB_DC5DT6:DG18DG19_BB B 5 ? B 19 ? B 6 ? B 18 ? 1 B DT 6 1_555 B DG 18 1_555 B DG 7 1_555 B DC 17 1_555 -0.410 -0.480 4.094 0.237 -4.665 28.327 0.359 0.895 4.114 -9.450 -0.481 28.702 19 BB_DT6DG7:DC17DG18_BB B 6 ? B 18 ? B 7 ? B 17 ? #