data_1KMD # _entry.id 1KMD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1KMD pdb_00001kmd 10.2210/pdb1kmd/pdb RCSB RCSB015106 ? ? WWPDB D_1000015106 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-06-12 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-23 5 'Structure model' 1 4 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_struct_assembly 3 4 'Structure model' pdbx_struct_oper_list 4 5 'Structure model' chem_comp_atom 5 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1KMD _pdbx_database_status.recvd_initial_deposition_date 2001-12-14 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lu, J.' 1 'Garcia, J.' 2 'Dulubova, I.' 3 'Sudhof, T.C.' 4 'Rizo, J.' 5 # _citation.id primary _citation.title 'Solution structure of the Vam7p PX domain.' _citation.journal_abbrev Biochemistry _citation.journal_volume 41 _citation.page_first 5956 _citation.page_last 5962 _citation.year 2002 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11993989 _citation.pdbx_database_id_DOI 10.1021/bi020050b # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lu, J.' 1 ? primary 'Garcia, J.' 2 ? primary 'Dulubova, I.' 3 ? primary 'Sudhof, T.C.' 4 ? primary 'Rizo, J.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Vacuolar morphogenesis protein VAM7' _entity.formula_weight 14418.483 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'PX domain, Residues 8-124' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name Vam7p # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;KMSEKLRIKVDDVKINPKYVLYGVSTPNKRLYKRYSEFWKLKTRLERDVGSTIPYDFPEKPGVLDRRWQRRYDDPEMIDE RRIGLERFLNELYNDRFDSRWRDTKIAQDFLQLSKPN ; _entity_poly.pdbx_seq_one_letter_code_can ;KMSEKLRIKVDDVKINPKYVLYGVSTPNKRLYKRYSEFWKLKTRLERDVGSTIPYDFPEKPGVLDRRWQRRYDDPEMIDE RRIGLERFLNELYNDRFDSRWRDTKIAQDFLQLSKPN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 MET n 1 3 SER n 1 4 GLU n 1 5 LYS n 1 6 LEU n 1 7 ARG n 1 8 ILE n 1 9 LYS n 1 10 VAL n 1 11 ASP n 1 12 ASP n 1 13 VAL n 1 14 LYS n 1 15 ILE n 1 16 ASN n 1 17 PRO n 1 18 LYS n 1 19 TYR n 1 20 VAL n 1 21 LEU n 1 22 TYR n 1 23 GLY n 1 24 VAL n 1 25 SER n 1 26 THR n 1 27 PRO n 1 28 ASN n 1 29 LYS n 1 30 ARG n 1 31 LEU n 1 32 TYR n 1 33 LYS n 1 34 ARG n 1 35 TYR n 1 36 SER n 1 37 GLU n 1 38 PHE n 1 39 TRP n 1 40 LYS n 1 41 LEU n 1 42 LYS n 1 43 THR n 1 44 ARG n 1 45 LEU n 1 46 GLU n 1 47 ARG n 1 48 ASP n 1 49 VAL n 1 50 GLY n 1 51 SER n 1 52 THR n 1 53 ILE n 1 54 PRO n 1 55 TYR n 1 56 ASP n 1 57 PHE n 1 58 PRO n 1 59 GLU n 1 60 LYS n 1 61 PRO n 1 62 GLY n 1 63 VAL n 1 64 LEU n 1 65 ASP n 1 66 ARG n 1 67 ARG n 1 68 TRP n 1 69 GLN n 1 70 ARG n 1 71 ARG n 1 72 TYR n 1 73 ASP n 1 74 ASP n 1 75 PRO n 1 76 GLU n 1 77 MET n 1 78 ILE n 1 79 ASP n 1 80 GLU n 1 81 ARG n 1 82 ARG n 1 83 ILE n 1 84 GLY n 1 85 LEU n 1 86 GLU n 1 87 ARG n 1 88 PHE n 1 89 LEU n 1 90 ASN n 1 91 GLU n 1 92 LEU n 1 93 TYR n 1 94 ASN n 1 95 ASP n 1 96 ARG n 1 97 PHE n 1 98 ASP n 1 99 SER n 1 100 ARG n 1 101 TRP n 1 102 ARG n 1 103 ASP n 1 104 THR n 1 105 LYS n 1 106 ILE n 1 107 ALA n 1 108 GLN n 1 109 ASP n 1 110 PHE n 1 111 LEU n 1 112 GLN n 1 113 LEU n 1 114 SER n 1 115 LYS n 1 116 PRO n 1 117 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ;baker's yeast ; _entity_src_gen.gene_src_genus Saccharomyces _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Saccharomyces cerevisiae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4932 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGEX-KG _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 8 8 LYS LYS A . n A 1 2 MET 2 9 9 MET MET A . n A 1 3 SER 3 10 10 SER SER A . n A 1 4 GLU 4 11 11 GLU GLU A . n A 1 5 LYS 5 12 12 LYS LYS A . n A 1 6 LEU 6 13 13 LEU LEU A . n A 1 7 ARG 7 14 14 ARG ARG A . n A 1 8 ILE 8 15 15 ILE ILE A . n A 1 9 LYS 9 16 16 LYS LYS A . n A 1 10 VAL 10 17 17 VAL VAL A . n A 1 11 ASP 11 18 18 ASP ASP A . n A 1 12 ASP 12 19 19 ASP ASP A . n A 1 13 VAL 13 20 20 VAL VAL A . n A 1 14 LYS 14 21 21 LYS LYS A . n A 1 15 ILE 15 22 22 ILE ILE A . n A 1 16 ASN 16 23 23 ASN ASN A . n A 1 17 PRO 17 24 24 PRO PRO A . n A 1 18 LYS 18 25 25 LYS LYS A . n A 1 19 TYR 19 26 26 TYR TYR A . n A 1 20 VAL 20 27 27 VAL VAL A . n A 1 21 LEU 21 28 28 LEU LEU A . n A 1 22 TYR 22 29 29 TYR TYR A . n A 1 23 GLY 23 30 30 GLY GLY A . n A 1 24 VAL 24 31 31 VAL VAL A . n A 1 25 SER 25 32 32 SER SER A . n A 1 26 THR 26 33 33 THR THR A . n A 1 27 PRO 27 34 34 PRO PRO A . n A 1 28 ASN 28 35 35 ASN ASN A . n A 1 29 LYS 29 36 36 LYS LYS A . n A 1 30 ARG 30 37 37 ARG ARG A . n A 1 31 LEU 31 38 38 LEU LEU A . n A 1 32 TYR 32 39 39 TYR TYR A . n A 1 33 LYS 33 40 40 LYS LYS A . n A 1 34 ARG 34 41 41 ARG ARG A . n A 1 35 TYR 35 42 42 TYR TYR A . n A 1 36 SER 36 43 43 SER SER A . n A 1 37 GLU 37 44 44 GLU GLU A . n A 1 38 PHE 38 45 45 PHE PHE A . n A 1 39 TRP 39 46 46 TRP TRP A . n A 1 40 LYS 40 47 47 LYS LYS A . n A 1 41 LEU 41 48 48 LEU LEU A . n A 1 42 LYS 42 49 49 LYS LYS A . n A 1 43 THR 43 50 50 THR THR A . n A 1 44 ARG 44 51 51 ARG ARG A . n A 1 45 LEU 45 52 52 LEU LEU A . n A 1 46 GLU 46 53 53 GLU GLU A . n A 1 47 ARG 47 54 54 ARG ARG A . n A 1 48 ASP 48 55 55 ASP ASP A . n A 1 49 VAL 49 56 56 VAL VAL A . n A 1 50 GLY 50 57 57 GLY GLY A . n A 1 51 SER 51 58 58 SER SER A . n A 1 52 THR 52 59 59 THR THR A . n A 1 53 ILE 53 60 60 ILE ILE A . n A 1 54 PRO 54 61 61 PRO PRO A . n A 1 55 TYR 55 62 62 TYR TYR A . n A 1 56 ASP 56 63 63 ASP ASP A . n A 1 57 PHE 57 64 64 PHE PHE A . n A 1 58 PRO 58 65 65 PRO PRO A . n A 1 59 GLU 59 66 66 GLU GLU A . n A 1 60 LYS 60 67 67 LYS LYS A . n A 1 61 PRO 61 68 68 PRO PRO A . n A 1 62 GLY 62 69 69 GLY GLY A . n A 1 63 VAL 63 70 70 VAL VAL A . n A 1 64 LEU 64 71 71 LEU LEU A . n A 1 65 ASP 65 72 72 ASP ASP A . n A 1 66 ARG 66 73 73 ARG ARG A . n A 1 67 ARG 67 74 74 ARG ARG A . n A 1 68 TRP 68 75 75 TRP TRP A . n A 1 69 GLN 69 76 76 GLN GLN A . n A 1 70 ARG 70 77 77 ARG ARG A . n A 1 71 ARG 71 78 78 ARG ARG A . n A 1 72 TYR 72 79 79 TYR TYR A . n A 1 73 ASP 73 80 80 ASP ASP A . n A 1 74 ASP 74 81 81 ASP ASP A . n A 1 75 PRO 75 82 82 PRO PRO A . n A 1 76 GLU 76 83 83 GLU GLU A . n A 1 77 MET 77 84 84 MET MET A . n A 1 78 ILE 78 85 85 ILE ILE A . n A 1 79 ASP 79 86 86 ASP ASP A . n A 1 80 GLU 80 87 87 GLU GLU A . n A 1 81 ARG 81 88 88 ARG ARG A . n A 1 82 ARG 82 89 89 ARG ARG A . n A 1 83 ILE 83 90 90 ILE ILE A . n A 1 84 GLY 84 91 91 GLY GLY A . n A 1 85 LEU 85 92 92 LEU LEU A . n A 1 86 GLU 86 93 93 GLU GLU A . n A 1 87 ARG 87 94 94 ARG ARG A . n A 1 88 PHE 88 95 95 PHE PHE A . n A 1 89 LEU 89 96 96 LEU LEU A . n A 1 90 ASN 90 97 97 ASN ASN A . n A 1 91 GLU 91 98 98 GLU GLU A . n A 1 92 LEU 92 99 99 LEU LEU A . n A 1 93 TYR 93 100 100 TYR TYR A . n A 1 94 ASN 94 101 101 ASN ASN A . n A 1 95 ASP 95 102 102 ASP ASP A . n A 1 96 ARG 96 103 103 ARG ARG A . n A 1 97 PHE 97 104 104 PHE PHE A . n A 1 98 ASP 98 105 105 ASP ASP A . n A 1 99 SER 99 106 106 SER SER A . n A 1 100 ARG 100 107 107 ARG ARG A . n A 1 101 TRP 101 108 108 TRP TRP A . n A 1 102 ARG 102 109 109 ARG ARG A . n A 1 103 ASP 103 110 110 ASP ASP A . n A 1 104 THR 104 111 111 THR THR A . n A 1 105 LYS 105 112 112 LYS LYS A . n A 1 106 ILE 106 113 113 ILE ILE A . n A 1 107 ALA 107 114 114 ALA ALA A . n A 1 108 GLN 108 115 115 GLN GLN A . n A 1 109 ASP 109 116 116 ASP ASP A . n A 1 110 PHE 110 117 117 PHE PHE A . n A 1 111 LEU 111 118 118 LEU LEU A . n A 1 112 GLN 112 119 119 GLN GLN A . n A 1 113 LEU 113 120 120 LEU LEU A . n A 1 114 SER 114 121 121 SER SER A . n A 1 115 LYS 115 122 122 LYS LYS A . n A 1 116 PRO 116 123 123 PRO PRO A . n A 1 117 ASN 117 124 124 ASN ASN A . n # _exptl.entry_id 1KMD _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.crystal_id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _database_PDB_matrix.entry_id 1KMD _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1KMD _struct.title 'SOLUTION STRUCTURE OF THE VAM7P PX DOMAIN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1KMD _struct_keywords.pdbx_keywords ENDOCYTOSIS/EXOCYTOSIS _struct_keywords.text 'PX domain, Vam7p, phosphoinositide binding, ENDOCYTOSIS-EXOCYTOSIS COMPLEX' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code VAM7_YEAST _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MAANSVGKMSEKLRIKVDDVKINPKYVLYGVSTPNKRLYKRYSEFWKLKTRLERDVGSTIPYDFPEKPGVLDRRWQRRYD DPEMIDERRIGLERFLNELYNDRFDSRWRDTKIAQDFLQLSKPNVSQEKSQQHLETADEVGWDEMIRDIKLDLDKESDGT PSVRGALRARTKLHKLRERLEQDVQKKSLPSTEVTRRAALLRSLLKECDDIGTANIAQDRGRLLGVATSDNSSTTEVQGR TNNDLQQGQMQMVRDQEQELVALHRIIQAQRGLALEMNEELQTQNELLTALEDDVDNTGRRLQIANKKARHFNNSA ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_accession P32912 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1KMD _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 117 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P32912 _struct_ref_seq.db_align_beg 8 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 124 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 124 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 34 ? GLY A 50 ? ARG A 41 GLY A 57 1 ? 17 HELX_P HELX_P2 2 ASP A 74 ? ASN A 94 ? ASP A 81 ASN A 101 1 ? 21 HELX_P HELX_P3 3 SER A 99 ? THR A 104 ? SER A 106 THR A 111 1 ? 6 HELX_P HELX_P4 4 THR A 104 ? LEU A 111 ? THR A 111 LEU A 118 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 31 ? LYS A 33 ? LEU A 38 LYS A 40 A 2 VAL A 20 ? SER A 25 ? VAL A 27 SER A 32 A 3 LYS A 9 ? VAL A 10 ? LYS A 16 VAL A 17 B 1 LEU A 31 ? LYS A 33 ? LEU A 38 LYS A 40 B 2 VAL A 20 ? SER A 25 ? VAL A 27 SER A 32 B 3 LYS A 14 ? ILE A 15 ? LYS A 21 ILE A 22 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LEU A 31 ? O LEU A 38 N VAL A 24 ? N VAL A 31 A 2 3 O SER A 25 ? O SER A 32 N LYS A 9 ? N LYS A 16 B 1 2 O LEU A 31 ? O LEU A 38 N VAL A 24 ? N VAL A 31 B 2 3 O LEU A 21 ? O LEU A 28 N LYS A 14 ? N LYS A 21 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 18 ? ? -144.25 27.76 2 1 LYS A 36 ? ? 167.70 -176.56 3 1 LYS A 49 ? ? -63.11 -73.96 4 1 PRO A 61 ? ? -88.50 34.05 5 1 VAL A 70 ? ? -81.43 -78.81 6 1 LEU A 71 ? ? -156.32 39.40 7 1 ARG A 103 ? ? -133.33 -62.28 8 1 LEU A 120 ? ? -92.35 38.06 9 1 SER A 121 ? ? -74.23 -168.36 10 2 ARG A 14 ? ? -65.10 98.88 11 2 ASP A 18 ? ? -142.69 25.62 12 2 LYS A 36 ? ? 165.52 -179.13 13 2 LYS A 49 ? ? -55.09 -71.48 14 2 VAL A 70 ? ? -77.37 -79.41 15 2 ASN A 101 ? ? -90.48 52.54 16 2 ARG A 103 ? ? -122.84 -67.45 17 2 LEU A 120 ? ? -91.76 38.76 18 3 LYS A 36 ? ? 136.16 -178.34 19 3 LYS A 49 ? ? -62.09 -72.80 20 3 PRO A 61 ? ? -88.61 35.11 21 3 VAL A 70 ? ? -103.20 -79.16 22 3 LEU A 71 ? ? -107.11 57.95 23 3 LEU A 120 ? ? -92.30 38.15 24 3 SER A 121 ? ? -105.40 -163.62 25 4 LYS A 36 ? ? 166.59 -179.41 26 4 LYS A 49 ? ? -56.17 -70.27 27 4 PRO A 61 ? ? -86.09 34.95 28 4 VAL A 70 ? ? -98.17 -78.98 29 4 ARG A 73 ? ? -141.67 13.44 30 4 ASN A 101 ? ? -95.41 57.43 31 4 LEU A 120 ? ? -92.03 38.59 32 5 LYS A 36 ? ? 167.86 -178.37 33 5 LYS A 49 ? ? -55.45 -72.51 34 5 PRO A 61 ? ? -85.52 33.94 35 5 VAL A 70 ? ? -67.37 -79.47 36 5 LEU A 71 ? ? -114.33 70.16 37 5 ASN A 101 ? ? -94.17 52.25 38 5 LEU A 120 ? ? -93.92 40.45 39 6 ASP A 18 ? ? -155.42 26.58 40 6 LYS A 36 ? ? 169.18 177.40 41 6 LYS A 49 ? ? -52.54 -72.31 42 6 GLU A 66 ? ? -74.73 -167.16 43 6 VAL A 70 ? ? -124.35 -79.16 44 6 LEU A 71 ? ? -166.70 45.52 45 6 ASP A 80 ? ? -98.90 33.67 46 6 ARG A 103 ? ? -128.64 -50.53 47 6 LEU A 120 ? ? -90.66 37.48 48 6 SER A 121 ? ? 57.11 176.40 49 7 LYS A 36 ? ? 168.30 -178.30 50 7 PRO A 61 ? ? -87.97 32.58 51 7 VAL A 70 ? ? -124.31 -78.99 52 7 ARG A 73 ? ? -135.86 -43.06 53 7 GLN A 76 ? ? 60.19 151.12 54 7 ASN A 101 ? ? -95.34 47.56 55 7 ARG A 103 ? ? -112.52 -78.33 56 7 LEU A 120 ? ? -87.29 39.31 57 8 LYS A 36 ? ? 166.62 -178.09 58 8 LYS A 49 ? ? -58.97 -72.69 59 8 PRO A 61 ? ? -87.11 31.05 60 8 VAL A 70 ? ? -60.57 -78.72 61 8 LEU A 99 ? ? -90.04 -60.69 62 8 LEU A 120 ? ? -94.40 41.80 63 8 SER A 121 ? ? -175.04 -166.41 64 9 ASP A 18 ? ? -151.90 26.08 65 9 LYS A 36 ? ? 105.99 -169.12 66 9 LYS A 49 ? ? -56.33 -72.39 67 9 PRO A 61 ? ? -87.03 38.13 68 9 VAL A 70 ? ? -91.01 -79.26 69 9 LEU A 71 ? ? -97.41 42.80 70 9 LEU A 120 ? ? -89.44 33.83 71 10 ASP A 18 ? ? -141.24 30.42 72 10 LYS A 36 ? ? 167.59 -177.61 73 10 LYS A 49 ? ? -59.25 -70.88 74 10 VAL A 70 ? ? -90.19 -78.21 75 10 LEU A 71 ? ? -93.82 41.62 76 10 ARG A 74 ? ? -158.58 -59.41 77 10 ASN A 101 ? ? -89.71 48.62 78 10 LEU A 120 ? ? -93.35 41.13 79 11 LYS A 36 ? ? 169.75 -179.11 80 11 LYS A 49 ? ? -73.39 -71.04 81 11 PRO A 61 ? ? -87.13 42.40 82 11 LEU A 71 ? ? 80.15 53.63 83 11 ARG A 73 ? ? -141.00 -55.94 84 11 LEU A 120 ? ? -92.74 38.41 85 12 ASP A 18 ? ? -143.90 24.71 86 12 LYS A 36 ? ? 168.73 -178.45 87 12 LYS A 49 ? ? -50.50 -70.80 88 12 PRO A 61 ? ? -84.79 43.41 89 12 VAL A 70 ? ? -100.56 -79.23 90 12 ARG A 73 ? ? -160.89 -43.89 91 12 ASN A 101 ? ? -94.46 45.21 92 12 LEU A 120 ? ? -97.32 37.03 93 13 ASP A 18 ? ? -142.73 23.50 94 13 LYS A 36 ? ? 136.76 -179.57 95 13 LYS A 49 ? ? -56.01 -70.92 96 13 PRO A 61 ? ? -86.02 39.33 97 13 VAL A 70 ? ? -75.82 -78.98 98 13 ARG A 73 ? ? -137.92 -44.98 99 13 LEU A 99 ? ? -90.87 -60.43 100 13 ARG A 103 ? ? -120.51 -50.39 101 13 LEU A 120 ? ? -90.16 40.66 102 13 SER A 121 ? ? -70.61 -163.30 103 14 LYS A 36 ? ? 168.90 -177.00 104 14 LYS A 49 ? ? -54.43 -72.06 105 14 VAL A 70 ? ? -94.29 -78.93 106 14 ARG A 73 ? ? -157.41 -43.94 107 14 ASP A 80 ? ? -97.11 34.07 108 14 LEU A 120 ? ? -94.23 42.04 109 15 LYS A 36 ? ? 167.76 -177.41 110 15 LYS A 49 ? ? -57.44 -75.01 111 15 PRO A 61 ? ? -87.31 32.01 112 15 VAL A 70 ? ? -77.02 -78.84 113 15 ARG A 73 ? ? 176.88 -36.59 114 15 ARG A 103 ? ? -127.10 -73.19 115 15 LEU A 120 ? ? -90.31 39.70 116 16 LYS A 36 ? ? 99.75 -167.57 117 16 LYS A 49 ? ? -55.73 -72.20 118 16 VAL A 70 ? ? -93.08 -78.90 119 16 LEU A 71 ? ? -103.23 56.89 120 16 ARG A 73 ? ? -133.87 -61.39 121 16 LEU A 120 ? ? -93.72 41.28 122 17 LYS A 36 ? ? 137.00 -175.87 123 17 LYS A 49 ? ? -54.06 -71.40 124 17 PRO A 61 ? ? -88.34 34.37 125 17 VAL A 70 ? ? -116.24 -79.29 126 17 LEU A 71 ? ? -144.21 40.03 127 17 LEU A 99 ? ? -91.56 -60.55 128 17 LEU A 120 ? ? -91.87 38.50 129 18 LYS A 36 ? ? 133.57 -179.36 130 18 LYS A 49 ? ? -52.42 -72.15 131 18 PRO A 61 ? ? -77.89 47.88 132 18 VAL A 70 ? ? -99.92 -78.87 133 18 ASN A 101 ? ? -95.97 44.31 134 18 LEU A 120 ? ? -92.20 38.89 135 19 ASP A 18 ? ? -140.13 28.47 136 19 LYS A 36 ? ? 139.51 178.53 137 19 LYS A 49 ? ? -55.02 -72.73 138 19 PRO A 61 ? ? -87.52 37.80 139 19 VAL A 70 ? ? -86.98 -79.07 140 19 LEU A 71 ? ? -146.85 50.26 141 19 ARG A 103 ? ? -111.06 -77.31 142 19 LEU A 120 ? ? -90.77 37.47 143 20 ARG A 14 ? ? -68.75 98.11 144 20 LYS A 36 ? ? 166.66 -178.75 145 20 LYS A 49 ? ? -53.12 -72.03 146 20 GLU A 66 ? ? -77.51 -169.37 147 20 VAL A 70 ? ? -75.07 -79.01 148 20 LEU A 120 ? ? -90.93 36.63 149 20 SER A 121 ? ? 57.75 -166.91 # _pdbx_nmr_ensemble.entry_id 1KMD _pdbx_nmr_ensemble.conformers_calculated_total_number 500 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'STRUCTURES WITH THE MINIMAL NOE ENERGY' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1KMD _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria ? # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '0.5mM Vam7p PX domain U-15N,20mM Mes buffer' '90% H2O/10% D2O' 2 '0.5mM Vam7p PX domain U-15N, 13C, 20mM Mes buffer' '90% H2O/10% D2O' 3 '0.5mM Vam7p PX domain U-15N, 20mM Mes Buffer' '100% D2O' 4 '0.5mM Vam7p PX domain 10%-13C, 20mM Mes buffer' '90% H2O/10% D2O' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.2 _pdbx_nmr_exptl_sample_conditions.ionic_strength '20mM Mes' _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 3D_15N-separated_NOESY 2 2 1 3D_13C-separated_NOESY # _pdbx_nmr_details.entry_id 1KMD _pdbx_nmr_details.text 'The structure was determined using triple-resonance NMR spectroscopy.' # _pdbx_nmr_refine.entry_id 1KMD _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ;the structures are based on a total of 1443 restraints, 1193 are NOE-derived distance constraints, 152 dihedral angle restraints, 98 distance restraints from hydrogen bonds. ; _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal NMRPipe 1.8 processing 'DeLaglio, F. et al.' 1 VNMR 6.1 collection Varian 2 NMRView 4.1.2 'data analysis' 'Johnson, B. and Blevins R.' 3 CNS 1.0 refinement 'Brunger, A.T. et al.' 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 ILE N N N N 123 ILE CA C N S 124 ILE C C N N 125 ILE O O N N 126 ILE CB C N S 127 ILE CG1 C N N 128 ILE CG2 C N N 129 ILE CD1 C N N 130 ILE OXT O N N 131 ILE H H N N 132 ILE H2 H N N 133 ILE HA H N N 134 ILE HB H N N 135 ILE HG12 H N N 136 ILE HG13 H N N 137 ILE HG21 H N N 138 ILE HG22 H N N 139 ILE HG23 H N N 140 ILE HD11 H N N 141 ILE HD12 H N N 142 ILE HD13 H N N 143 ILE HXT H N N 144 LEU N N N N 145 LEU CA C N S 146 LEU C C N N 147 LEU O O N N 148 LEU CB C N N 149 LEU CG C N N 150 LEU CD1 C N N 151 LEU CD2 C N N 152 LEU OXT O N N 153 LEU H H N N 154 LEU H2 H N N 155 LEU HA H N N 156 LEU HB2 H N N 157 LEU HB3 H N N 158 LEU HG H N N 159 LEU HD11 H N N 160 LEU HD12 H N N 161 LEU HD13 H N N 162 LEU HD21 H N N 163 LEU HD22 H N N 164 LEU HD23 H N N 165 LEU HXT H N N 166 LYS N N N N 167 LYS CA C N S 168 LYS C C N N 169 LYS O O N N 170 LYS CB C N N 171 LYS CG C N N 172 LYS CD C N N 173 LYS CE C N N 174 LYS NZ N N N 175 LYS OXT O N N 176 LYS H H N N 177 LYS H2 H N N 178 LYS HA H N N 179 LYS HB2 H N N 180 LYS HB3 H N N 181 LYS HG2 H N N 182 LYS HG3 H N N 183 LYS HD2 H N N 184 LYS HD3 H N N 185 LYS HE2 H N N 186 LYS HE3 H N N 187 LYS HZ1 H N N 188 LYS HZ2 H N N 189 LYS HZ3 H N N 190 LYS HXT H N N 191 MET N N N N 192 MET CA C N S 193 MET C C N N 194 MET O O N N 195 MET CB C N N 196 MET CG C N N 197 MET SD S N N 198 MET CE C N N 199 MET OXT O N N 200 MET H H N N 201 MET H2 H N N 202 MET HA H N N 203 MET HB2 H N N 204 MET HB3 H N N 205 MET HG2 H N N 206 MET HG3 H N N 207 MET HE1 H N N 208 MET HE2 H N N 209 MET HE3 H N N 210 MET HXT H N N 211 PHE N N N N 212 PHE CA C N S 213 PHE C C N N 214 PHE O O N N 215 PHE CB C N N 216 PHE CG C Y N 217 PHE CD1 C Y N 218 PHE CD2 C Y N 219 PHE CE1 C Y N 220 PHE CE2 C Y N 221 PHE CZ C Y N 222 PHE OXT O N N 223 PHE H H N N 224 PHE H2 H N N 225 PHE HA H N N 226 PHE HB2 H N N 227 PHE HB3 H N N 228 PHE HD1 H N N 229 PHE HD2 H N N 230 PHE HE1 H N N 231 PHE HE2 H N N 232 PHE HZ H N N 233 PHE HXT H N N 234 PRO N N N N 235 PRO CA C N S 236 PRO C C N N 237 PRO O O N N 238 PRO CB C N N 239 PRO CG C N N 240 PRO CD C N N 241 PRO OXT O N N 242 PRO H H N N 243 PRO HA H N N 244 PRO HB2 H N N 245 PRO HB3 H N N 246 PRO HG2 H N N 247 PRO HG3 H N N 248 PRO HD2 H N N 249 PRO HD3 H N N 250 PRO HXT H N N 251 SER N N N N 252 SER CA C N S 253 SER C C N N 254 SER O O N N 255 SER CB C N N 256 SER OG O N N 257 SER OXT O N N 258 SER H H N N 259 SER H2 H N N 260 SER HA H N N 261 SER HB2 H N N 262 SER HB3 H N N 263 SER HG H N N 264 SER HXT H N N 265 THR N N N N 266 THR CA C N S 267 THR C C N N 268 THR O O N N 269 THR CB C N R 270 THR OG1 O N N 271 THR CG2 C N N 272 THR OXT O N N 273 THR H H N N 274 THR H2 H N N 275 THR HA H N N 276 THR HB H N N 277 THR HG1 H N N 278 THR HG21 H N N 279 THR HG22 H N N 280 THR HG23 H N N 281 THR HXT H N N 282 TRP N N N N 283 TRP CA C N S 284 TRP C C N N 285 TRP O O N N 286 TRP CB C N N 287 TRP CG C Y N 288 TRP CD1 C Y N 289 TRP CD2 C Y N 290 TRP NE1 N Y N 291 TRP CE2 C Y N 292 TRP CE3 C Y N 293 TRP CZ2 C Y N 294 TRP CZ3 C Y N 295 TRP CH2 C Y N 296 TRP OXT O N N 297 TRP H H N N 298 TRP H2 H N N 299 TRP HA H N N 300 TRP HB2 H N N 301 TRP HB3 H N N 302 TRP HD1 H N N 303 TRP HE1 H N N 304 TRP HE3 H N N 305 TRP HZ2 H N N 306 TRP HZ3 H N N 307 TRP HH2 H N N 308 TRP HXT H N N 309 TYR N N N N 310 TYR CA C N S 311 TYR C C N N 312 TYR O O N N 313 TYR CB C N N 314 TYR CG C Y N 315 TYR CD1 C Y N 316 TYR CD2 C Y N 317 TYR CE1 C Y N 318 TYR CE2 C Y N 319 TYR CZ C Y N 320 TYR OH O N N 321 TYR OXT O N N 322 TYR H H N N 323 TYR H2 H N N 324 TYR HA H N N 325 TYR HB2 H N N 326 TYR HB3 H N N 327 TYR HD1 H N N 328 TYR HD2 H N N 329 TYR HE1 H N N 330 TYR HE2 H N N 331 TYR HH H N N 332 TYR HXT H N N 333 VAL N N N N 334 VAL CA C N S 335 VAL C C N N 336 VAL O O N N 337 VAL CB C N N 338 VAL CG1 C N N 339 VAL CG2 C N N 340 VAL OXT O N N 341 VAL H H N N 342 VAL H2 H N N 343 VAL HA H N N 344 VAL HB H N N 345 VAL HG11 H N N 346 VAL HG12 H N N 347 VAL HG13 H N N 348 VAL HG21 H N N 349 VAL HG22 H N N 350 VAL HG23 H N N 351 VAL HXT H N N 352 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 ILE N CA sing N N 116 ILE N H sing N N 117 ILE N H2 sing N N 118 ILE CA C sing N N 119 ILE CA CB sing N N 120 ILE CA HA sing N N 121 ILE C O doub N N 122 ILE C OXT sing N N 123 ILE CB CG1 sing N N 124 ILE CB CG2 sing N N 125 ILE CB HB sing N N 126 ILE CG1 CD1 sing N N 127 ILE CG1 HG12 sing N N 128 ILE CG1 HG13 sing N N 129 ILE CG2 HG21 sing N N 130 ILE CG2 HG22 sing N N 131 ILE CG2 HG23 sing N N 132 ILE CD1 HD11 sing N N 133 ILE CD1 HD12 sing N N 134 ILE CD1 HD13 sing N N 135 ILE OXT HXT sing N N 136 LEU N CA sing N N 137 LEU N H sing N N 138 LEU N H2 sing N N 139 LEU CA C sing N N 140 LEU CA CB sing N N 141 LEU CA HA sing N N 142 LEU C O doub N N 143 LEU C OXT sing N N 144 LEU CB CG sing N N 145 LEU CB HB2 sing N N 146 LEU CB HB3 sing N N 147 LEU CG CD1 sing N N 148 LEU CG CD2 sing N N 149 LEU CG HG sing N N 150 LEU CD1 HD11 sing N N 151 LEU CD1 HD12 sing N N 152 LEU CD1 HD13 sing N N 153 LEU CD2 HD21 sing N N 154 LEU CD2 HD22 sing N N 155 LEU CD2 HD23 sing N N 156 LEU OXT HXT sing N N 157 LYS N CA sing N N 158 LYS N H sing N N 159 LYS N H2 sing N N 160 LYS CA C sing N N 161 LYS CA CB sing N N 162 LYS CA HA sing N N 163 LYS C O doub N N 164 LYS C OXT sing N N 165 LYS CB CG sing N N 166 LYS CB HB2 sing N N 167 LYS CB HB3 sing N N 168 LYS CG CD sing N N 169 LYS CG HG2 sing N N 170 LYS CG HG3 sing N N 171 LYS CD CE sing N N 172 LYS CD HD2 sing N N 173 LYS CD HD3 sing N N 174 LYS CE NZ sing N N 175 LYS CE HE2 sing N N 176 LYS CE HE3 sing N N 177 LYS NZ HZ1 sing N N 178 LYS NZ HZ2 sing N N 179 LYS NZ HZ3 sing N N 180 LYS OXT HXT sing N N 181 MET N CA sing N N 182 MET N H sing N N 183 MET N H2 sing N N 184 MET CA C sing N N 185 MET CA CB sing N N 186 MET CA HA sing N N 187 MET C O doub N N 188 MET C OXT sing N N 189 MET CB CG sing N N 190 MET CB HB2 sing N N 191 MET CB HB3 sing N N 192 MET CG SD sing N N 193 MET CG HG2 sing N N 194 MET CG HG3 sing N N 195 MET SD CE sing N N 196 MET CE HE1 sing N N 197 MET CE HE2 sing N N 198 MET CE HE3 sing N N 199 MET OXT HXT sing N N 200 PHE N CA sing N N 201 PHE N H sing N N 202 PHE N H2 sing N N 203 PHE CA C sing N N 204 PHE CA CB sing N N 205 PHE CA HA sing N N 206 PHE C O doub N N 207 PHE C OXT sing N N 208 PHE CB CG sing N N 209 PHE CB HB2 sing N N 210 PHE CB HB3 sing N N 211 PHE CG CD1 doub Y N 212 PHE CG CD2 sing Y N 213 PHE CD1 CE1 sing Y N 214 PHE CD1 HD1 sing N N 215 PHE CD2 CE2 doub Y N 216 PHE CD2 HD2 sing N N 217 PHE CE1 CZ doub Y N 218 PHE CE1 HE1 sing N N 219 PHE CE2 CZ sing Y N 220 PHE CE2 HE2 sing N N 221 PHE CZ HZ sing N N 222 PHE OXT HXT sing N N 223 PRO N CA sing N N 224 PRO N CD sing N N 225 PRO N H sing N N 226 PRO CA C sing N N 227 PRO CA CB sing N N 228 PRO CA HA sing N N 229 PRO C O doub N N 230 PRO C OXT sing N N 231 PRO CB CG sing N N 232 PRO CB HB2 sing N N 233 PRO CB HB3 sing N N 234 PRO CG CD sing N N 235 PRO CG HG2 sing N N 236 PRO CG HG3 sing N N 237 PRO CD HD2 sing N N 238 PRO CD HD3 sing N N 239 PRO OXT HXT sing N N 240 SER N CA sing N N 241 SER N H sing N N 242 SER N H2 sing N N 243 SER CA C sing N N 244 SER CA CB sing N N 245 SER CA HA sing N N 246 SER C O doub N N 247 SER C OXT sing N N 248 SER CB OG sing N N 249 SER CB HB2 sing N N 250 SER CB HB3 sing N N 251 SER OG HG sing N N 252 SER OXT HXT sing N N 253 THR N CA sing N N 254 THR N H sing N N 255 THR N H2 sing N N 256 THR CA C sing N N 257 THR CA CB sing N N 258 THR CA HA sing N N 259 THR C O doub N N 260 THR C OXT sing N N 261 THR CB OG1 sing N N 262 THR CB CG2 sing N N 263 THR CB HB sing N N 264 THR OG1 HG1 sing N N 265 THR CG2 HG21 sing N N 266 THR CG2 HG22 sing N N 267 THR CG2 HG23 sing N N 268 THR OXT HXT sing N N 269 TRP N CA sing N N 270 TRP N H sing N N 271 TRP N H2 sing N N 272 TRP CA C sing N N 273 TRP CA CB sing N N 274 TRP CA HA sing N N 275 TRP C O doub N N 276 TRP C OXT sing N N 277 TRP CB CG sing N N 278 TRP CB HB2 sing N N 279 TRP CB HB3 sing N N 280 TRP CG CD1 doub Y N 281 TRP CG CD2 sing Y N 282 TRP CD1 NE1 sing Y N 283 TRP CD1 HD1 sing N N 284 TRP CD2 CE2 doub Y N 285 TRP CD2 CE3 sing Y N 286 TRP NE1 CE2 sing Y N 287 TRP NE1 HE1 sing N N 288 TRP CE2 CZ2 sing Y N 289 TRP CE3 CZ3 doub Y N 290 TRP CE3 HE3 sing N N 291 TRP CZ2 CH2 doub Y N 292 TRP CZ2 HZ2 sing N N 293 TRP CZ3 CH2 sing Y N 294 TRP CZ3 HZ3 sing N N 295 TRP CH2 HH2 sing N N 296 TRP OXT HXT sing N N 297 TYR N CA sing N N 298 TYR N H sing N N 299 TYR N H2 sing N N 300 TYR CA C sing N N 301 TYR CA CB sing N N 302 TYR CA HA sing N N 303 TYR C O doub N N 304 TYR C OXT sing N N 305 TYR CB CG sing N N 306 TYR CB HB2 sing N N 307 TYR CB HB3 sing N N 308 TYR CG CD1 doub Y N 309 TYR CG CD2 sing Y N 310 TYR CD1 CE1 sing Y N 311 TYR CD1 HD1 sing N N 312 TYR CD2 CE2 doub Y N 313 TYR CD2 HD2 sing N N 314 TYR CE1 CZ doub Y N 315 TYR CE1 HE1 sing N N 316 TYR CE2 CZ sing Y N 317 TYR CE2 HE2 sing N N 318 TYR CZ OH sing N N 319 TYR OH HH sing N N 320 TYR OXT HXT sing N N 321 VAL N CA sing N N 322 VAL N H sing N N 323 VAL N H2 sing N N 324 VAL CA C sing N N 325 VAL CA CB sing N N 326 VAL CA HA sing N N 327 VAL C O doub N N 328 VAL C OXT sing N N 329 VAL CB CG1 sing N N 330 VAL CB CG2 sing N N 331 VAL CB HB sing N N 332 VAL CG1 HG11 sing N N 333 VAL CG1 HG12 sing N N 334 VAL CG1 HG13 sing N N 335 VAL CG2 HG21 sing N N 336 VAL CG2 HG22 sing N N 337 VAL CG2 HG23 sing N N 338 VAL OXT HXT sing N N 339 # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.field_strength 1 ? Varian INOVA 500 2 ? Varian INOVA 600 # _atom_sites.entry_id 1KMD _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_