data_1KUQ # _entry.id 1KUQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.376 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1KUQ pdb_00001kuq 10.2210/pdb1kuq/pdb NDB RR0050 ? ? RCSB RCSB015360 ? ? WWPDB D_1000015360 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1dk1 _pdbx_database_related.details 'DETAILED VIEW OF A KEY ELEMENT OF THE RIBOSOME ASSEMBLY: CRYSTAL STRUCTURE OF THE S15-RRNA COMPLEX' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1KUQ _pdbx_database_status.recvd_initial_deposition_date 2002-01-22 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nikulin, A.D.' 1 'Tishchenko, S.' 2 'Revtovich, S.' 3 'Ehresmann, B.' 4 'Ehresmann, C.' 5 'Dumas, P.' 6 'Garber, M.' 7 'Nikonov, S.' 8 'Nevskaya, N.' 9 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Role of N-terminal helix in interaction of ribosomal protein S15 with 16S rRNA.' 'Biochemistry Mosc.' 69 1319 1323 2004 ? US 0006-2979 ? ? 15627386 10.1007/s10541-005-0076-5 1 'Crystal structure of the S15-rRNA complex' Nat.Struct.Biol. 7 273 277 2000 NSBIEW US 1072-8368 2024 ? ? 10.1038/74028 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Revtovich, S.V.' 1 ? primary 'Nikulin, A.D.' 2 ? primary 'Nikonov, S.V.' 3 ? 1 'Nikulin, A.' 4 ? 1 'Serganov, A.' 5 ? 1 'Ennifar, E.' 6 ? 1 'Tishchenko, S.' 7 ? 1 'Nevskaya, N.' 8 ? 1 'Shepard, W.' 9 ? 1 'Portier, C.' 10 ? 1 'Garber, M.' 11 ? 1 'Ehresmann, B.' 12 ? 1 'Ehresmann, C.' 13 ? 1 'Nikonov, S.' 14 ? 1 'Dumas, P.' 15 ? # _cell.entry_id 1KUQ _cell.length_a 128.229 _cell.length_b 128.229 _cell.length_c 64.951 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KUQ _symmetry.space_group_name_H-M 'P 64 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man '16S RIBOSOMAL RNA FRAGMENT' 18464.963 1 ? ? ? ? 2 polymer man '30S RIBOSOMAL PROTEIN S15' 10366.200 1 ? T3C ? ? 3 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 4 water nat water 18.015 6 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GGGCGGCCUUCGGGCUAGACGGUGGGAGAGGCUUCGGCUGGUCCACCCGUGACGCUC GGGCGGCCUUCGGGCUAGACGGUGGGAGAGGCUUCGGCUGGUCCACCCGUGACGCUC B ? 2 'polypeptide(L)' no no ;MPICKEEKQKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQRRRLLRYLQREDPERYRA LIEKLGI ; ;MPICKEEKQKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQRRRLLRYLQREDPERYRA LIEKLGI ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 G n 1 4 C n 1 5 G n 1 6 G n 1 7 C n 1 8 C n 1 9 U n 1 10 U n 1 11 C n 1 12 G n 1 13 G n 1 14 G n 1 15 C n 1 16 U n 1 17 A n 1 18 G n 1 19 A n 1 20 C n 1 21 G n 1 22 G n 1 23 U n 1 24 G n 1 25 G n 1 26 G n 1 27 A n 1 28 G n 1 29 A n 1 30 G n 1 31 G n 1 32 C n 1 33 U n 1 34 U n 1 35 C n 1 36 G n 1 37 G n 1 38 C n 1 39 U n 1 40 G n 1 41 G n 1 42 U n 1 43 C n 1 44 C n 1 45 A n 1 46 C n 1 47 C n 1 48 C n 1 49 G n 1 50 U n 1 51 G n 1 52 A n 1 53 C n 1 54 G n 1 55 C n 1 56 U n 1 57 C n 2 1 MET n 2 2 PRO n 2 3 ILE n 2 4 CYS n 2 5 LYS n 2 6 GLU n 2 7 GLU n 2 8 LYS n 2 9 GLN n 2 10 LYS n 2 11 VAL n 2 12 ILE n 2 13 GLN n 2 14 GLU n 2 15 PHE n 2 16 ALA n 2 17 ARG n 2 18 PHE n 2 19 PRO n 2 20 GLY n 2 21 ASP n 2 22 THR n 2 23 GLY n 2 24 SER n 2 25 THR n 2 26 GLU n 2 27 VAL n 2 28 GLN n 2 29 VAL n 2 30 ALA n 2 31 LEU n 2 32 LEU n 2 33 THR n 2 34 LEU n 2 35 ARG n 2 36 ILE n 2 37 ASN n 2 38 ARG n 2 39 LEU n 2 40 SER n 2 41 GLU n 2 42 HIS n 2 43 LEU n 2 44 LYS n 2 45 VAL n 2 46 HIS n 2 47 LYS n 2 48 LYS n 2 49 ASP n 2 50 HIS n 2 51 HIS n 2 52 SER n 2 53 HIS n 2 54 ARG n 2 55 GLY n 2 56 LEU n 2 57 LEU n 2 58 MET n 2 59 MET n 2 60 VAL n 2 61 GLY n 2 62 GLN n 2 63 ARG n 2 64 ARG n 2 65 ARG n 2 66 LEU n 2 67 LEU n 2 68 ARG n 2 69 TYR n 2 70 LEU n 2 71 GLN n 2 72 ARG n 2 73 GLU n 2 74 ASP n 2 75 PRO n 2 76 GLU n 2 77 ARG n 2 78 TYR n 2 79 ARG n 2 80 ALA n 2 81 LEU n 2 82 ILE n 2 83 GLU n 2 84 LYS n 2 85 LEU n 2 86 GLY n 2 87 ILE n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? ? Thermus ? ? ? ? ? ? ? 'Thermus thermophilus' 274 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? DH1 ? ? ? ? ? ? ? PLASMID ? ? ? ? ? ? 2 1 sample ? ? ? ? Thermus ? ? ? ? ? ? ? 'Thermus thermophilus' 274 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? B834 ? ? ? ? ? ? ? PLASMID ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP RS15_THETH 2 ;MPITKEEKQKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQRRRLLRYLQREDPERYRA LIEKLGIRG ; 0 P80378 ? 2 PDB 1KUQ 1 ? ? 1KUQ ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1KUQ A 1 ? 87 ? P80378 0 ? 86 ? 0 86 2 2 1KUQ B 1 ? 57 ? 1KUQ 1 ? 57 ? 1 57 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 1KUQ _struct_ref_seq_dif.mon_id CYS _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 4 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P80378 _struct_ref_seq_dif.db_mon_id THR _struct_ref_seq_dif.pdbx_seq_db_seq_num 3 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 3 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1KUQ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 53.98 _exptl_crystal.density_Matthews 2.67 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.2 _exptl_crystal_grow.pdbx_details 'ammonium sulphate, KCl, MgCl2, sodium cacodylate, pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 295K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'ammonium sulphate' ? ? ? 1 2 1 KCl ? ? ? 1 3 1 MgCl2 ? ? ? 1 4 1 'sodium cacodylate' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1999-09-21 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.933 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-2' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.933 # _reflns.entry_id 1KUQ _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 25 _reflns.d_resolution_high 2.84 _reflns.number_obs 7828 _reflns.number_all 7828 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.049 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 117.9 _reflns.pdbx_redundancy 5.6 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.84 _reflns_shell.d_res_low 2.92 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.12 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1KUQ _refine.ls_number_reflns_obs 7724 _refine.ls_number_reflns_all 7780 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF 1157536.51 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.ls_d_res_low 24.41 _refine.ls_d_res_high 2.84 _refine.ls_percent_reflns_obs 98.8 _refine.ls_R_factor_obs 0.231 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.231 _refine.ls_R_factor_R_free 0.322 _refine.ls_R_factor_R_free_error 0.016 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.3 _refine.ls_number_reflns_R_free 412 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 56.9 _refine.aniso_B[1][1] -4.18 _refine.aniso_B[2][2] -4.18 _refine.aniso_B[3][3] 8.37 _refine.aniso_B[1][2] 4.29 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.362129 _refine.solvent_model_param_bsol 69.8947 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB entry 1DK1' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1KUQ _refine_analyze.Luzzati_coordinate_error_obs 0.40 _refine_analyze.Luzzati_sigma_a_obs 0.45 _refine_analyze.Luzzati_d_res_low_obs 50.00 _refine_analyze.Luzzati_coordinate_error_free 0.61 _refine_analyze.Luzzati_sigma_a_free 0.41 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 703 _refine_hist.pdbx_number_atoms_nucleic_acid 1292 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 6 _refine_hist.number_atoms_total 2006 _refine_hist.d_res_high 2.84 _refine_hist.d_res_low 24.41 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.2 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 18.9 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.40 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 9.33 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 14.40 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 8.01 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 10.73 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.84 _refine_ls_shell.d_res_low 3.02 _refine_ls_shell.number_reflns_R_work 1161 _refine_ls_shell.R_factor_R_work 0.376 _refine_ls_shell.percent_reflns_obs 96.8 _refine_ls_shell.R_factor_R_free 0.43 _refine_ls_shell.R_factor_R_free_error 0.060 _refine_ls_shell.percent_reflns_R_free 4.2 _refine_ls_shell.number_reflns_R_free 51 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 DNA-RNA_REP.PARAM DNA-RNA.TOP 'X-RAY DIFFRACTION' 3 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' 4 ION.PARAM ION.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 1KUQ _struct.title 'CRYSTAL STRUCTURE OF T3C MUTANT S15 RIBOSOMAL PROTEIN IN COMPLEX WITH 16S RRNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1KUQ _struct_keywords.pdbx_keywords RIBOSOME _struct_keywords.text 'rRNA-protein complex, RIBOSOME' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU B 6 ? ALA B 16 ? GLU A 5 ALA A 15 1 ? 11 HELX_P HELX_P2 2 SER B 24 ? HIS B 46 ? SER A 23 HIS A 45 1 ? 23 HELX_P HELX_P3 3 HIS B 50 ? ARG B 72 ? HIS A 49 ARG A 71 1 ? 23 HELX_P HELX_P4 4 ASP B 74 ? GLU B 83 ? ASP A 73 GLU A 82 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 57 N3 ? ? B G 1 B C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 57 O2 ? ? B G 1 B C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 57 N4 ? ? B G 1 B C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A U 56 O2 ? ? B G 2 B U 56 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog5 hydrog ? ? A G 2 O6 ? ? ? 1_555 A U 56 N3 ? ? B G 2 B U 56 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog6 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 55 N3 ? ? B G 3 B C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 55 O2 ? ? B G 3 B C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 55 N4 ? ? B G 3 B C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 54 N1 ? ? B C 4 B G 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 54 O6 ? ? B C 4 B G 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 54 N2 ? ? B C 4 B G 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 15 N3 ? ? B G 6 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 15 O2 ? ? B G 6 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 15 N4 ? ? B G 6 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 7 N3 ? ? ? 1_555 A G 14 N1 ? ? B C 7 B G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 14 O6 ? ? B C 7 B G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 14 N2 ? ? B C 7 B G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 8 N3 ? ? ? 1_555 A G 13 N1 ? ? B C 8 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 8 N4 ? ? ? 1_555 A G 13 O6 ? ? B C 8 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 8 O2 ? ? ? 1_555 A G 13 N2 ? ? B C 8 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 9 O2 ? ? ? 1_555 A G 12 N1 ? ? B U 9 B G 12 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog22 hydrog ? ? A U 16 N3 ? ? ? 1_555 A A 52 N7 ? ? B U 16 B A 52 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog23 hydrog ? ? A U 16 O2 ? ? ? 1_555 A A 52 N6 ? ? B U 16 B A 52 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog24 hydrog ? ? A G 18 O6 ? ? ? 1_555 A G 51 N2 ? ? B G 18 B G 51 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog25 hydrog ? ? A G 18 N1 ? ? ? 1_555 A C 53 N3 ? ? B G 18 B C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 18 N2 ? ? ? 1_555 A C 53 O2 ? ? B G 18 B C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 18 O6 ? ? ? 1_555 A C 53 N4 ? ? B G 18 B C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A A 19 N1 ? ? ? 1_555 A U 50 N3 ? ? B A 19 B U 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A A 19 N6 ? ? ? 1_555 A U 50 O4 ? ? B A 19 B U 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 20 N3 ? ? ? 1_555 A G 49 N1 ? ? B C 20 B G 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 20 N4 ? ? ? 1_555 A G 49 O6 ? ? B C 20 B G 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 20 O2 ? ? ? 1_555 A G 49 N2 ? ? B C 20 B G 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 21 N1 ? ? ? 1_555 A C 48 N3 ? ? B G 21 B C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 21 N2 ? ? ? 1_555 A C 48 O2 ? ? B G 21 B C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 21 O6 ? ? ? 1_555 A C 48 N4 ? ? B G 21 B C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 22 N1 ? ? ? 1_555 A C 46 O2 ? ? B G 22 B C 46 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog37 hydrog ? ? A U 23 N3 ? ? ? 1_555 A A 45 N1 ? ? B U 23 B A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A U 23 O4 ? ? ? 1_555 A A 45 N6 ? ? B U 23 B A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 24 N1 ? ? ? 1_555 A C 44 N3 ? ? B G 24 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 24 N2 ? ? ? 1_555 A C 44 O2 ? ? B G 24 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 24 O6 ? ? ? 1_555 A C 44 N4 ? ? B G 24 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 25 N1 ? ? ? 1_555 A C 43 N3 ? ? B G 25 B C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 25 N2 ? ? ? 1_555 A C 43 O2 ? ? B G 25 B C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 25 O6 ? ? ? 1_555 A C 43 N4 ? ? B G 25 B C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 26 N1 ? ? ? 1_555 A U 42 O2 ? ? B G 26 B U 42 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog46 hydrog ? ? A G 26 O6 ? ? ? 1_555 A U 42 N3 ? ? B G 26 B U 42 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog47 hydrog ? ? A A 27 N1 A ? ? 1_555 A G 41 N2 ? ? B A 27 B G 41 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog48 hydrog ? ? A A 27 N6 A ? ? 1_555 A U 42 O2 ? ? B A 27 B U 42 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog49 hydrog ? ? A G 28 N1 A ? ? 1_555 A G 40 O6 ? ? B G 28 B G 40 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog50 hydrog ? ? A G 30 N1 ? ? ? 1_555 A U 39 O2 ? ? B G 30 B U 39 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog51 hydrog ? ? A G 30 O6 ? ? ? 1_555 A U 39 N3 ? ? B G 30 B U 39 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog52 hydrog ? ? A G 31 N1 ? ? ? 1_555 A C 38 N3 ? ? B G 31 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 31 N2 ? ? ? 1_555 A C 38 O2 ? ? B G 31 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 31 O6 ? ? ? 1_555 A C 38 N4 ? ? B G 31 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A C 32 N3 ? ? ? 1_555 A G 37 N1 ? ? B C 32 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 32 N4 ? ? ? 1_555 A G 37 O6 ? ? B C 32 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A C 32 O2 ? ? ? 1_555 A G 37 N2 ? ? B C 32 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A U 50 O2 ? ? ? 1_555 A C 53 N4 ? ? B U 50 B C 53 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog59 hydrog ? ? A G 51 N3 ? ? ? 1_555 A C 53 N4 ? ? B G 51 B C 53 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id SO4 _struct_site.pdbx_auth_seq_id 87 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE SO4 A 87' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 HIS B 51 ? HIS A 50 . ? 1_555 ? 2 AC1 4 ARG B 54 ? ARG A 53 . ? 1_555 ? 3 AC1 4 G A 40 ? G B 40 . ? 1_555 ? 4 AC1 4 G A 41 ? G B 41 . ? 1_555 ? # _database_PDB_matrix.entry_id 1KUQ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1KUQ _atom_sites.fract_transf_matrix[1][1] 0.007799 _atom_sites.fract_transf_matrix[1][2] 0.004502 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009005 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015396 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G B . n A 1 2 G 2 2 2 G G B . n A 1 3 G 3 3 3 G G B . n A 1 4 C 4 4 4 C C B . n A 1 5 G 5 5 5 G G B . n A 1 6 G 6 6 6 G G B . n A 1 7 C 7 7 7 C C B . n A 1 8 C 8 8 8 C C B . n A 1 9 U 9 9 9 U U B . n A 1 10 U 10 10 10 U U B . n A 1 11 C 11 11 11 C C B . n A 1 12 G 12 12 12 G G B . n A 1 13 G 13 13 13 G G B . n A 1 14 G 14 14 14 G G B . n A 1 15 C 15 15 15 C C B . n A 1 16 U 16 16 16 U U B . n A 1 17 A 17 17 17 A A B . n A 1 18 G 18 18 18 G G B . n A 1 19 A 19 19 19 A A B . n A 1 20 C 20 20 20 C C B . n A 1 21 G 21 21 21 G G B . n A 1 22 G 22 22 22 G G B . n A 1 23 U 23 23 23 U U B . n A 1 24 G 24 24 24 G G B . n A 1 25 G 25 25 25 G G B . n A 1 26 G 26 26 26 G G B . n A 1 27 A 27 27 27 A A B . n A 1 28 G 28 28 28 G G B . n A 1 29 A 29 29 29 A A B . n A 1 30 G 30 30 30 G G B . n A 1 31 G 31 31 31 G G B . n A 1 32 C 32 32 32 C C B . n A 1 33 U 33 33 33 U U B . n A 1 34 U 34 34 34 U U B . n A 1 35 C 35 35 35 C C B . n A 1 36 G 36 36 36 G G B . n A 1 37 G 37 37 37 G G B . n A 1 38 C 38 38 38 C C B . n A 1 39 U 39 39 39 U U B . n A 1 40 G 40 40 40 G G B . n A 1 41 G 41 41 41 G G B . n A 1 42 U 42 42 42 U U B . n A 1 43 C 43 43 43 C C B . n A 1 44 C 44 44 44 C C B . n A 1 45 A 45 45 45 A A B . n A 1 46 C 46 46 46 C C B . n A 1 47 C 47 47 47 C C B . n A 1 48 C 48 48 48 C C B . n A 1 49 G 49 49 49 G G B . n A 1 50 U 50 50 50 U U B . n A 1 51 G 51 51 51 G G B . n A 1 52 A 52 52 52 A A B . n A 1 53 C 53 53 53 C C B . n A 1 54 G 54 54 54 G G B . n A 1 55 C 55 55 55 C C B . n A 1 56 U 56 56 56 U U B . n A 1 57 C 57 57 57 C C B . n B 2 1 MET 1 0 ? ? ? A . n B 2 2 PRO 2 1 ? ? ? A . n B 2 3 ILE 3 2 ? ? ? A . n B 2 4 CYS 4 3 3 CYS CYS A . n B 2 5 LYS 5 4 4 LYS LYS A . n B 2 6 GLU 6 5 5 GLU GLU A . n B 2 7 GLU 7 6 6 GLU GLU A . n B 2 8 LYS 8 7 7 LYS LYS A . n B 2 9 GLN 9 8 8 GLN GLN A . n B 2 10 LYS 10 9 9 LYS LYS A . n B 2 11 VAL 11 10 10 VAL VAL A . n B 2 12 ILE 12 11 11 ILE ILE A . n B 2 13 GLN 13 12 12 GLN GLN A . n B 2 14 GLU 14 13 13 GLU GLU A . n B 2 15 PHE 15 14 14 PHE PHE A . n B 2 16 ALA 16 15 15 ALA ALA A . n B 2 17 ARG 17 16 16 ARG ARG A . n B 2 18 PHE 18 17 17 PHE PHE A . n B 2 19 PRO 19 18 18 PRO PRO A . n B 2 20 GLY 20 19 19 GLY GLY A . n B 2 21 ASP 21 20 20 ASP ASP A . n B 2 22 THR 22 21 21 THR THR A . n B 2 23 GLY 23 22 22 GLY GLY A . n B 2 24 SER 24 23 23 SER SER A . n B 2 25 THR 25 24 24 THR THR A . n B 2 26 GLU 26 25 25 GLU GLU A . n B 2 27 VAL 27 26 26 VAL VAL A . n B 2 28 GLN 28 27 27 GLN GLN A . n B 2 29 VAL 29 28 28 VAL VAL A . n B 2 30 ALA 30 29 29 ALA ALA A . n B 2 31 LEU 31 30 30 LEU LEU A . n B 2 32 LEU 32 31 31 LEU LEU A . n B 2 33 THR 33 32 32 THR THR A . n B 2 34 LEU 34 33 33 LEU LEU A . n B 2 35 ARG 35 34 34 ARG ARG A . n B 2 36 ILE 36 35 35 ILE ILE A . n B 2 37 ASN 37 36 36 ASN ASN A . n B 2 38 ARG 38 37 37 ARG ARG A . n B 2 39 LEU 39 38 38 LEU LEU A . n B 2 40 SER 40 39 39 SER SER A . n B 2 41 GLU 41 40 40 GLU GLU A . n B 2 42 HIS 42 41 41 HIS HIS A . n B 2 43 LEU 43 42 42 LEU LEU A . n B 2 44 LYS 44 43 43 LYS LYS A . n B 2 45 VAL 45 44 44 VAL VAL A . n B 2 46 HIS 46 45 45 HIS HIS A . n B 2 47 LYS 47 46 46 LYS LYS A . n B 2 48 LYS 48 47 47 LYS LYS A . n B 2 49 ASP 49 48 48 ASP ASP A . n B 2 50 HIS 50 49 49 HIS HIS A . n B 2 51 HIS 51 50 50 HIS HIS A . n B 2 52 SER 52 51 51 SER SER A . n B 2 53 HIS 53 52 52 HIS HIS A . n B 2 54 ARG 54 53 53 ARG ARG A . n B 2 55 GLY 55 54 54 GLY GLY A . n B 2 56 LEU 56 55 55 LEU LEU A . n B 2 57 LEU 57 56 56 LEU LEU A . n B 2 58 MET 58 57 57 MET MET A . n B 2 59 MET 59 58 58 MET MET A . n B 2 60 VAL 60 59 59 VAL VAL A . n B 2 61 GLY 61 60 60 GLY GLY A . n B 2 62 GLN 62 61 61 GLN GLN A . n B 2 63 ARG 63 62 62 ARG ARG A . n B 2 64 ARG 64 63 63 ARG ARG A . n B 2 65 ARG 65 64 64 ARG ARG A . n B 2 66 LEU 66 65 65 LEU LEU A . n B 2 67 LEU 67 66 66 LEU LEU A . n B 2 68 ARG 68 67 67 ARG ARG A . n B 2 69 TYR 69 68 68 TYR TYR A . n B 2 70 LEU 70 69 69 LEU LEU A . n B 2 71 GLN 71 70 70 GLN GLN A . n B 2 72 ARG 72 71 71 ARG ARG A . n B 2 73 GLU 73 72 72 GLU GLU A . n B 2 74 ASP 74 73 73 ASP ASP A . n B 2 75 PRO 75 74 74 PRO PRO A . n B 2 76 GLU 76 75 75 GLU GLU A . n B 2 77 ARG 77 76 76 ARG ARG A . n B 2 78 TYR 78 77 77 TYR TYR A . n B 2 79 ARG 79 78 78 ARG ARG A . n B 2 80 ALA 80 79 79 ALA ALA A . n B 2 81 LEU 81 80 80 LEU LEU A . n B 2 82 ILE 82 81 81 ILE ILE A . n B 2 83 GLU 83 82 82 GLU GLU A . n B 2 84 LYS 84 83 83 LYS LYS A . n B 2 85 LEU 85 84 84 LEU LEU A . n B 2 86 GLY 86 85 85 GLY GLY A . n B 2 87 ILE 87 86 86 ILE ILE A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 1 87 7 SO4 SO4 A . D 4 HOH 1 58 1 HOH HOH B . D 4 HOH 2 59 2 HOH HOH B . D 4 HOH 3 60 3 HOH HOH B . D 4 HOH 4 61 4 HOH HOH B . E 4 HOH 1 88 5 HOH HOH A . E 4 HOH 2 89 6 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-06-24 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-10-27 5 'Structure model' 1 4 2023-08-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' struct_ref_seq_dif 3 4 'Structure model' struct_site 4 5 'Structure model' chem_comp_atom 5 5 'Structure model' chem_comp_bond 6 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALA 'data scaling' . ? 2 CNS refinement . ? 3 CCP4 'data scaling' '(SCALA)' ? 4 CNS phasing . ? 5 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 P _pdbx_validate_rmsd_bond.auth_asym_id_1 B _pdbx_validate_rmsd_bond.auth_comp_id_1 G _pdbx_validate_rmsd_bond.auth_seq_id_1 1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OP3 _pdbx_validate_rmsd_bond.auth_asym_id_2 B _pdbx_validate_rmsd_bond.auth_comp_id_2 G _pdbx_validate_rmsd_bond.auth_seq_id_2 1 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.523 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation -0.084 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N1 B C 11 ? ? "C1'" B C 11 ? ? "C2'" B C 11 ? ? 121.86 114.00 7.86 1.30 N 2 1 N1 B U 16 ? ? "C1'" B U 16 ? ? "C2'" B U 16 ? ? 122.27 114.00 8.27 1.30 N 3 1 N9 B G 51 ? ? "C1'" B G 51 ? ? "C2'" B G 51 ? ? 122.20 114.00 8.20 1.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 4 ? ? -61.75 1.93 2 1 PRO A 18 ? ? -55.39 102.26 3 1 SER A 23 ? ? -49.94 161.41 4 1 HIS A 45 ? ? -108.92 70.84 5 1 ASP A 48 ? ? -60.00 96.94 6 1 ARG A 71 ? ? -85.32 30.01 7 1 GLU A 72 ? ? -137.60 -42.56 8 1 ASP A 73 ? ? -160.05 77.88 9 1 LEU A 84 ? ? -162.84 -63.92 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 U B 9 ? ? 0.073 'SIDE CHAIN' 2 1 U B 16 ? ? 0.078 'SIDE CHAIN' 3 1 U B 42 ? ? 0.062 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 0 ? B MET 1 2 1 Y 1 A PRO 1 ? B PRO 2 3 1 Y 1 A ILE 2 ? B ILE 3 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 CYS N N N N 146 CYS CA C N R 147 CYS C C N N 148 CYS O O N N 149 CYS CB C N N 150 CYS SG S N N 151 CYS OXT O N N 152 CYS H H N N 153 CYS H2 H N N 154 CYS HA H N N 155 CYS HB2 H N N 156 CYS HB3 H N N 157 CYS HG H N N 158 CYS HXT H N N 159 G OP3 O N N 160 G P P N N 161 G OP1 O N N 162 G OP2 O N N 163 G "O5'" O N N 164 G "C5'" C N N 165 G "C4'" C N R 166 G "O4'" O N N 167 G "C3'" C N S 168 G "O3'" O N N 169 G "C2'" C N R 170 G "O2'" O N N 171 G "C1'" C N R 172 G N9 N Y N 173 G C8 C Y N 174 G N7 N Y N 175 G C5 C Y N 176 G C6 C N N 177 G O6 O N N 178 G N1 N N N 179 G C2 C N N 180 G N2 N N N 181 G N3 N N N 182 G C4 C Y N 183 G HOP3 H N N 184 G HOP2 H N N 185 G "H5'" H N N 186 G "H5''" H N N 187 G "H4'" H N N 188 G "H3'" H N N 189 G "HO3'" H N N 190 G "H2'" H N N 191 G "HO2'" H N N 192 G "H1'" H N N 193 G H8 H N N 194 G H1 H N N 195 G H21 H N N 196 G H22 H N N 197 GLN N N N N 198 GLN CA C N S 199 GLN C C N N 200 GLN O O N N 201 GLN CB C N N 202 GLN CG C N N 203 GLN CD C N N 204 GLN OE1 O N N 205 GLN NE2 N N N 206 GLN OXT O N N 207 GLN H H N N 208 GLN H2 H N N 209 GLN HA H N N 210 GLN HB2 H N N 211 GLN HB3 H N N 212 GLN HG2 H N N 213 GLN HG3 H N N 214 GLN HE21 H N N 215 GLN HE22 H N N 216 GLN HXT H N N 217 GLU N N N N 218 GLU CA C N S 219 GLU C C N N 220 GLU O O N N 221 GLU CB C N N 222 GLU CG C N N 223 GLU CD C N N 224 GLU OE1 O N N 225 GLU OE2 O N N 226 GLU OXT O N N 227 GLU H H N N 228 GLU H2 H N N 229 GLU HA H N N 230 GLU HB2 H N N 231 GLU HB3 H N N 232 GLU HG2 H N N 233 GLU HG3 H N N 234 GLU HE2 H N N 235 GLU HXT H N N 236 GLY N N N N 237 GLY CA C N N 238 GLY C C N N 239 GLY O O N N 240 GLY OXT O N N 241 GLY H H N N 242 GLY H2 H N N 243 GLY HA2 H N N 244 GLY HA3 H N N 245 GLY HXT H N N 246 HIS N N N N 247 HIS CA C N S 248 HIS C C N N 249 HIS O O N N 250 HIS CB C N N 251 HIS CG C Y N 252 HIS ND1 N Y N 253 HIS CD2 C Y N 254 HIS CE1 C Y N 255 HIS NE2 N Y N 256 HIS OXT O N N 257 HIS H H N N 258 HIS H2 H N N 259 HIS HA H N N 260 HIS HB2 H N N 261 HIS HB3 H N N 262 HIS HD1 H N N 263 HIS HD2 H N N 264 HIS HE1 H N N 265 HIS HE2 H N N 266 HIS HXT H N N 267 HOH O O N N 268 HOH H1 H N N 269 HOH H2 H N N 270 ILE N N N N 271 ILE CA C N S 272 ILE C C N N 273 ILE O O N N 274 ILE CB C N S 275 ILE CG1 C N N 276 ILE CG2 C N N 277 ILE CD1 C N N 278 ILE OXT O N N 279 ILE H H N N 280 ILE H2 H N N 281 ILE HA H N N 282 ILE HB H N N 283 ILE HG12 H N N 284 ILE HG13 H N N 285 ILE HG21 H N N 286 ILE HG22 H N N 287 ILE HG23 H N N 288 ILE HD11 H N N 289 ILE HD12 H N N 290 ILE HD13 H N N 291 ILE HXT H N N 292 LEU N N N N 293 LEU CA C N S 294 LEU C C N N 295 LEU O O N N 296 LEU CB C N N 297 LEU CG C N N 298 LEU CD1 C N N 299 LEU CD2 C N N 300 LEU OXT O N N 301 LEU H H N N 302 LEU H2 H N N 303 LEU HA H N N 304 LEU HB2 H N N 305 LEU HB3 H N N 306 LEU HG H N N 307 LEU HD11 H N N 308 LEU HD12 H N N 309 LEU HD13 H N N 310 LEU HD21 H N N 311 LEU HD22 H N N 312 LEU HD23 H N N 313 LEU HXT H N N 314 LYS N N N N 315 LYS CA C N S 316 LYS C C N N 317 LYS O O N N 318 LYS CB C N N 319 LYS CG C N N 320 LYS CD C N N 321 LYS CE C N N 322 LYS NZ N N N 323 LYS OXT O N N 324 LYS H H N N 325 LYS H2 H N N 326 LYS HA H N N 327 LYS HB2 H N N 328 LYS HB3 H N N 329 LYS HG2 H N N 330 LYS HG3 H N N 331 LYS HD2 H N N 332 LYS HD3 H N N 333 LYS HE2 H N N 334 LYS HE3 H N N 335 LYS HZ1 H N N 336 LYS HZ2 H N N 337 LYS HZ3 H N N 338 LYS HXT H N N 339 MET N N N N 340 MET CA C N S 341 MET C C N N 342 MET O O N N 343 MET CB C N N 344 MET CG C N N 345 MET SD S N N 346 MET CE C N N 347 MET OXT O N N 348 MET H H N N 349 MET H2 H N N 350 MET HA H N N 351 MET HB2 H N N 352 MET HB3 H N N 353 MET HG2 H N N 354 MET HG3 H N N 355 MET HE1 H N N 356 MET HE2 H N N 357 MET HE3 H N N 358 MET HXT H N N 359 PHE N N N N 360 PHE CA C N S 361 PHE C C N N 362 PHE O O N N 363 PHE CB C N N 364 PHE CG C Y N 365 PHE CD1 C Y N 366 PHE CD2 C Y N 367 PHE CE1 C Y N 368 PHE CE2 C Y N 369 PHE CZ C Y N 370 PHE OXT O N N 371 PHE H H N N 372 PHE H2 H N N 373 PHE HA H N N 374 PHE HB2 H N N 375 PHE HB3 H N N 376 PHE HD1 H N N 377 PHE HD2 H N N 378 PHE HE1 H N N 379 PHE HE2 H N N 380 PHE HZ H N N 381 PHE HXT H N N 382 PRO N N N N 383 PRO CA C N S 384 PRO C C N N 385 PRO O O N N 386 PRO CB C N N 387 PRO CG C N N 388 PRO CD C N N 389 PRO OXT O N N 390 PRO H H N N 391 PRO HA H N N 392 PRO HB2 H N N 393 PRO HB3 H N N 394 PRO HG2 H N N 395 PRO HG3 H N N 396 PRO HD2 H N N 397 PRO HD3 H N N 398 PRO HXT H N N 399 SER N N N N 400 SER CA C N S 401 SER C C N N 402 SER O O N N 403 SER CB C N N 404 SER OG O N N 405 SER OXT O N N 406 SER H H N N 407 SER H2 H N N 408 SER HA H N N 409 SER HB2 H N N 410 SER HB3 H N N 411 SER HG H N N 412 SER HXT H N N 413 SO4 S S N N 414 SO4 O1 O N N 415 SO4 O2 O N N 416 SO4 O3 O N N 417 SO4 O4 O N N 418 THR N N N N 419 THR CA C N S 420 THR C C N N 421 THR O O N N 422 THR CB C N R 423 THR OG1 O N N 424 THR CG2 C N N 425 THR OXT O N N 426 THR H H N N 427 THR H2 H N N 428 THR HA H N N 429 THR HB H N N 430 THR HG1 H N N 431 THR HG21 H N N 432 THR HG22 H N N 433 THR HG23 H N N 434 THR HXT H N N 435 TYR N N N N 436 TYR CA C N S 437 TYR C C N N 438 TYR O O N N 439 TYR CB C N N 440 TYR CG C Y N 441 TYR CD1 C Y N 442 TYR CD2 C Y N 443 TYR CE1 C Y N 444 TYR CE2 C Y N 445 TYR CZ C Y N 446 TYR OH O N N 447 TYR OXT O N N 448 TYR H H N N 449 TYR H2 H N N 450 TYR HA H N N 451 TYR HB2 H N N 452 TYR HB3 H N N 453 TYR HD1 H N N 454 TYR HD2 H N N 455 TYR HE1 H N N 456 TYR HE2 H N N 457 TYR HH H N N 458 TYR HXT H N N 459 U OP3 O N N 460 U P P N N 461 U OP1 O N N 462 U OP2 O N N 463 U "O5'" O N N 464 U "C5'" C N N 465 U "C4'" C N R 466 U "O4'" O N N 467 U "C3'" C N S 468 U "O3'" O N N 469 U "C2'" C N R 470 U "O2'" O N N 471 U "C1'" C N R 472 U N1 N N N 473 U C2 C N N 474 U O2 O N N 475 U N3 N N N 476 U C4 C N N 477 U O4 O N N 478 U C5 C N N 479 U C6 C N N 480 U HOP3 H N N 481 U HOP2 H N N 482 U "H5'" H N N 483 U "H5''" H N N 484 U "H4'" H N N 485 U "H3'" H N N 486 U "HO3'" H N N 487 U "H2'" H N N 488 U "HO2'" H N N 489 U "H1'" H N N 490 U H3 H N N 491 U H5 H N N 492 U H6 H N N 493 VAL N N N N 494 VAL CA C N S 495 VAL C C N N 496 VAL O O N N 497 VAL CB C N N 498 VAL CG1 C N N 499 VAL CG2 C N N 500 VAL OXT O N N 501 VAL H H N N 502 VAL H2 H N N 503 VAL HA H N N 504 VAL HB H N N 505 VAL HG11 H N N 506 VAL HG12 H N N 507 VAL HG13 H N N 508 VAL HG21 H N N 509 VAL HG22 H N N 510 VAL HG23 H N N 511 VAL HXT H N N 512 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 CYS N CA sing N N 145 CYS N H sing N N 146 CYS N H2 sing N N 147 CYS CA C sing N N 148 CYS CA CB sing N N 149 CYS CA HA sing N N 150 CYS C O doub N N 151 CYS C OXT sing N N 152 CYS CB SG sing N N 153 CYS CB HB2 sing N N 154 CYS CB HB3 sing N N 155 CYS SG HG sing N N 156 CYS OXT HXT sing N N 157 G OP3 P sing N N 158 G OP3 HOP3 sing N N 159 G P OP1 doub N N 160 G P OP2 sing N N 161 G P "O5'" sing N N 162 G OP2 HOP2 sing N N 163 G "O5'" "C5'" sing N N 164 G "C5'" "C4'" sing N N 165 G "C5'" "H5'" sing N N 166 G "C5'" "H5''" sing N N 167 G "C4'" "O4'" sing N N 168 G "C4'" "C3'" sing N N 169 G "C4'" "H4'" sing N N 170 G "O4'" "C1'" sing N N 171 G "C3'" "O3'" sing N N 172 G "C3'" "C2'" sing N N 173 G "C3'" "H3'" sing N N 174 G "O3'" "HO3'" sing N N 175 G "C2'" "O2'" sing N N 176 G "C2'" "C1'" sing N N 177 G "C2'" "H2'" sing N N 178 G "O2'" "HO2'" sing N N 179 G "C1'" N9 sing N N 180 G "C1'" "H1'" sing N N 181 G N9 C8 sing Y N 182 G N9 C4 sing Y N 183 G C8 N7 doub Y N 184 G C8 H8 sing N N 185 G N7 C5 sing Y N 186 G C5 C6 sing N N 187 G C5 C4 doub Y N 188 G C6 O6 doub N N 189 G C6 N1 sing N N 190 G N1 C2 sing N N 191 G N1 H1 sing N N 192 G C2 N2 sing N N 193 G C2 N3 doub N N 194 G N2 H21 sing N N 195 G N2 H22 sing N N 196 G N3 C4 sing N N 197 GLN N CA sing N N 198 GLN N H sing N N 199 GLN N H2 sing N N 200 GLN CA C sing N N 201 GLN CA CB sing N N 202 GLN CA HA sing N N 203 GLN C O doub N N 204 GLN C OXT sing N N 205 GLN CB CG sing N N 206 GLN CB HB2 sing N N 207 GLN CB HB3 sing N N 208 GLN CG CD sing N N 209 GLN CG HG2 sing N N 210 GLN CG HG3 sing N N 211 GLN CD OE1 doub N N 212 GLN CD NE2 sing N N 213 GLN NE2 HE21 sing N N 214 GLN NE2 HE22 sing N N 215 GLN OXT HXT sing N N 216 GLU N CA sing N N 217 GLU N H sing N N 218 GLU N H2 sing N N 219 GLU CA C sing N N 220 GLU CA CB sing N N 221 GLU CA HA sing N N 222 GLU C O doub N N 223 GLU C OXT sing N N 224 GLU CB CG sing N N 225 GLU CB HB2 sing N N 226 GLU CB HB3 sing N N 227 GLU CG CD sing N N 228 GLU CG HG2 sing N N 229 GLU CG HG3 sing N N 230 GLU CD OE1 doub N N 231 GLU CD OE2 sing N N 232 GLU OE2 HE2 sing N N 233 GLU OXT HXT sing N N 234 GLY N CA sing N N 235 GLY N H sing N N 236 GLY N H2 sing N N 237 GLY CA C sing N N 238 GLY CA HA2 sing N N 239 GLY CA HA3 sing N N 240 GLY C O doub N N 241 GLY C OXT sing N N 242 GLY OXT HXT sing N N 243 HIS N CA sing N N 244 HIS N H sing N N 245 HIS N H2 sing N N 246 HIS CA C sing N N 247 HIS CA CB sing N N 248 HIS CA HA sing N N 249 HIS C O doub N N 250 HIS C OXT sing N N 251 HIS CB CG sing N N 252 HIS CB HB2 sing N N 253 HIS CB HB3 sing N N 254 HIS CG ND1 sing Y N 255 HIS CG CD2 doub Y N 256 HIS ND1 CE1 doub Y N 257 HIS ND1 HD1 sing N N 258 HIS CD2 NE2 sing Y N 259 HIS CD2 HD2 sing N N 260 HIS CE1 NE2 sing Y N 261 HIS CE1 HE1 sing N N 262 HIS NE2 HE2 sing N N 263 HIS OXT HXT sing N N 264 HOH O H1 sing N N 265 HOH O H2 sing N N 266 ILE N CA sing N N 267 ILE N H sing N N 268 ILE N H2 sing N N 269 ILE CA C sing N N 270 ILE CA CB sing N N 271 ILE CA HA sing N N 272 ILE C O doub N N 273 ILE C OXT sing N N 274 ILE CB CG1 sing N N 275 ILE CB CG2 sing N N 276 ILE CB HB sing N N 277 ILE CG1 CD1 sing N N 278 ILE CG1 HG12 sing N N 279 ILE CG1 HG13 sing N N 280 ILE CG2 HG21 sing N N 281 ILE CG2 HG22 sing N N 282 ILE CG2 HG23 sing N N 283 ILE CD1 HD11 sing N N 284 ILE CD1 HD12 sing N N 285 ILE CD1 HD13 sing N N 286 ILE OXT HXT sing N N 287 LEU N CA sing N N 288 LEU N H sing N N 289 LEU N H2 sing N N 290 LEU CA C sing N N 291 LEU CA CB sing N N 292 LEU CA HA sing N N 293 LEU C O doub N N 294 LEU C OXT sing N N 295 LEU CB CG sing N N 296 LEU CB HB2 sing N N 297 LEU CB HB3 sing N N 298 LEU CG CD1 sing N N 299 LEU CG CD2 sing N N 300 LEU CG HG sing N N 301 LEU CD1 HD11 sing N N 302 LEU CD1 HD12 sing N N 303 LEU CD1 HD13 sing N N 304 LEU CD2 HD21 sing N N 305 LEU CD2 HD22 sing N N 306 LEU CD2 HD23 sing N N 307 LEU OXT HXT sing N N 308 LYS N CA sing N N 309 LYS N H sing N N 310 LYS N H2 sing N N 311 LYS CA C sing N N 312 LYS CA CB sing N N 313 LYS CA HA sing N N 314 LYS C O doub N N 315 LYS C OXT sing N N 316 LYS CB CG sing N N 317 LYS CB HB2 sing N N 318 LYS CB HB3 sing N N 319 LYS CG CD sing N N 320 LYS CG HG2 sing N N 321 LYS CG HG3 sing N N 322 LYS CD CE sing N N 323 LYS CD HD2 sing N N 324 LYS CD HD3 sing N N 325 LYS CE NZ sing N N 326 LYS CE HE2 sing N N 327 LYS CE HE3 sing N N 328 LYS NZ HZ1 sing N N 329 LYS NZ HZ2 sing N N 330 LYS NZ HZ3 sing N N 331 LYS OXT HXT sing N N 332 MET N CA sing N N 333 MET N H sing N N 334 MET N H2 sing N N 335 MET CA C sing N N 336 MET CA CB sing N N 337 MET CA HA sing N N 338 MET C O doub N N 339 MET C OXT sing N N 340 MET CB CG sing N N 341 MET CB HB2 sing N N 342 MET CB HB3 sing N N 343 MET CG SD sing N N 344 MET CG HG2 sing N N 345 MET CG HG3 sing N N 346 MET SD CE sing N N 347 MET CE HE1 sing N N 348 MET CE HE2 sing N N 349 MET CE HE3 sing N N 350 MET OXT HXT sing N N 351 PHE N CA sing N N 352 PHE N H sing N N 353 PHE N H2 sing N N 354 PHE CA C sing N N 355 PHE CA CB sing N N 356 PHE CA HA sing N N 357 PHE C O doub N N 358 PHE C OXT sing N N 359 PHE CB CG sing N N 360 PHE CB HB2 sing N N 361 PHE CB HB3 sing N N 362 PHE CG CD1 doub Y N 363 PHE CG CD2 sing Y N 364 PHE CD1 CE1 sing Y N 365 PHE CD1 HD1 sing N N 366 PHE CD2 CE2 doub Y N 367 PHE CD2 HD2 sing N N 368 PHE CE1 CZ doub Y N 369 PHE CE1 HE1 sing N N 370 PHE CE2 CZ sing Y N 371 PHE CE2 HE2 sing N N 372 PHE CZ HZ sing N N 373 PHE OXT HXT sing N N 374 PRO N CA sing N N 375 PRO N CD sing N N 376 PRO N H sing N N 377 PRO CA C sing N N 378 PRO CA CB sing N N 379 PRO CA HA sing N N 380 PRO C O doub N N 381 PRO C OXT sing N N 382 PRO CB CG sing N N 383 PRO CB HB2 sing N N 384 PRO CB HB3 sing N N 385 PRO CG CD sing N N 386 PRO CG HG2 sing N N 387 PRO CG HG3 sing N N 388 PRO CD HD2 sing N N 389 PRO CD HD3 sing N N 390 PRO OXT HXT sing N N 391 SER N CA sing N N 392 SER N H sing N N 393 SER N H2 sing N N 394 SER CA C sing N N 395 SER CA CB sing N N 396 SER CA HA sing N N 397 SER C O doub N N 398 SER C OXT sing N N 399 SER CB OG sing N N 400 SER CB HB2 sing N N 401 SER CB HB3 sing N N 402 SER OG HG sing N N 403 SER OXT HXT sing N N 404 SO4 S O1 doub N N 405 SO4 S O2 doub N N 406 SO4 S O3 sing N N 407 SO4 S O4 sing N N 408 THR N CA sing N N 409 THR N H sing N N 410 THR N H2 sing N N 411 THR CA C sing N N 412 THR CA CB sing N N 413 THR CA HA sing N N 414 THR C O doub N N 415 THR C OXT sing N N 416 THR CB OG1 sing N N 417 THR CB CG2 sing N N 418 THR CB HB sing N N 419 THR OG1 HG1 sing N N 420 THR CG2 HG21 sing N N 421 THR CG2 HG22 sing N N 422 THR CG2 HG23 sing N N 423 THR OXT HXT sing N N 424 TYR N CA sing N N 425 TYR N H sing N N 426 TYR N H2 sing N N 427 TYR CA C sing N N 428 TYR CA CB sing N N 429 TYR CA HA sing N N 430 TYR C O doub N N 431 TYR C OXT sing N N 432 TYR CB CG sing N N 433 TYR CB HB2 sing N N 434 TYR CB HB3 sing N N 435 TYR CG CD1 doub Y N 436 TYR CG CD2 sing Y N 437 TYR CD1 CE1 sing Y N 438 TYR CD1 HD1 sing N N 439 TYR CD2 CE2 doub Y N 440 TYR CD2 HD2 sing N N 441 TYR CE1 CZ doub Y N 442 TYR CE1 HE1 sing N N 443 TYR CE2 CZ sing Y N 444 TYR CE2 HE2 sing N N 445 TYR CZ OH sing N N 446 TYR OH HH sing N N 447 TYR OXT HXT sing N N 448 U OP3 P sing N N 449 U OP3 HOP3 sing N N 450 U P OP1 doub N N 451 U P OP2 sing N N 452 U P "O5'" sing N N 453 U OP2 HOP2 sing N N 454 U "O5'" "C5'" sing N N 455 U "C5'" "C4'" sing N N 456 U "C5'" "H5'" sing N N 457 U "C5'" "H5''" sing N N 458 U "C4'" "O4'" sing N N 459 U "C4'" "C3'" sing N N 460 U "C4'" "H4'" sing N N 461 U "O4'" "C1'" sing N N 462 U "C3'" "O3'" sing N N 463 U "C3'" "C2'" sing N N 464 U "C3'" "H3'" sing N N 465 U "O3'" "HO3'" sing N N 466 U "C2'" "O2'" sing N N 467 U "C2'" "C1'" sing N N 468 U "C2'" "H2'" sing N N 469 U "O2'" "HO2'" sing N N 470 U "C1'" N1 sing N N 471 U "C1'" "H1'" sing N N 472 U N1 C2 sing N N 473 U N1 C6 sing N N 474 U C2 O2 doub N N 475 U C2 N3 sing N N 476 U N3 C4 sing N N 477 U N3 H3 sing N N 478 U C4 O4 doub N N 479 U C4 C5 sing N N 480 U C5 C6 doub N N 481 U C5 H5 sing N N 482 U C6 H6 sing N N 483 VAL N CA sing N N 484 VAL N H sing N N 485 VAL N H2 sing N N 486 VAL CA C sing N N 487 VAL CA CB sing N N 488 VAL CA HA sing N N 489 VAL C O doub N N 490 VAL C OXT sing N N 491 VAL CB CG1 sing N N 492 VAL CB CG2 sing N N 493 VAL CB HB sing N N 494 VAL CG1 HG11 sing N N 495 VAL CG1 HG12 sing N N 496 VAL CG1 HG13 sing N N 497 VAL CG2 HG21 sing N N 498 VAL CG2 HG22 sing N N 499 VAL CG2 HG23 sing N N 500 VAL OXT HXT sing N N 501 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1KUQ 'double helix' 1KUQ 'a-form double helix' 1KUQ 'hairpin loop' 1KUQ tetraloop 1KUQ 'bulge loop' 1KUQ 'mismatched base pair' 1KUQ 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 57 1_555 -0.502 -0.211 -0.139 0.477 -0.827 -7.832 1 B_G1:C57_B B 1 ? B 57 ? 19 1 1 A G 2 1_555 A U 56 1_555 -1.922 -0.724 0.431 3.917 -12.868 2.329 2 B_G2:U56_B B 2 ? B 56 ? 28 1 1 A G 3 1_555 A C 55 1_555 -0.926 -0.232 0.043 -2.400 -9.672 3.875 3 B_G3:C55_B B 3 ? B 55 ? 19 1 1 A C 4 1_555 A G 54 1_555 0.163 -0.313 0.244 -2.200 -7.958 -3.866 4 B_C4:G54_B B 4 ? B 54 ? 19 1 1 A G 12 1_555 A U 9 1_555 -0.220 5.679 0.383 12.426 0.320 113.287 5 B_G12:U9_B B 12 ? B 9 ? ? 2 1 A G 13 1_555 A C 8 1_555 0.218 -0.076 -0.251 -4.842 -6.017 5.871 6 B_G13:C8_B B 13 ? B 8 ? 19 1 1 A G 14 1_555 A C 7 1_555 0.390 -0.281 -0.857 -20.068 -12.510 9.788 7 B_G14:C7_B B 14 ? B 7 ? 19 1 1 A C 15 1_555 A G 6 1_555 0.158 -0.449 0.036 -14.135 -3.239 -3.516 8 B_C15:G6_B B 15 ? B 6 ? 19 1 1 A A 52 1_555 A U 16 1_555 -3.899 -2.053 -0.238 -13.234 -0.917 -95.318 9 B_A52:U16_B B 52 ? B 16 ? 24 4 1 A G 18 1_555 A C 53 1_555 -0.207 -0.183 -0.519 -0.802 -2.764 -4.975 10 B_G18:C53_B B 18 ? B 53 ? 19 1 1 A A 19 1_555 A U 50 1_555 -0.064 -0.248 0.211 7.840 -8.038 0.541 11 B_A19:U50_B B 19 ? B 50 ? 20 1 1 A C 20 1_555 A G 49 1_555 0.377 -0.223 -0.255 11.868 -10.599 4.689 12 B_C20:G49_B B 20 ? B 49 ? 19 1 1 A G 21 1_555 A C 48 1_555 -0.181 -0.370 -0.144 -4.911 -6.448 1.708 13 B_G21:C48_B B 21 ? B 48 ? 19 1 1 A G 22 1_555 A C 46 1_555 -1.877 -0.455 0.311 -3.512 -24.385 -6.985 14 B_G22:C46_B B 22 ? B 46 ? ? 1 1 A U 23 1_555 A A 45 1_555 -0.177 -0.201 0.431 -3.449 -12.933 9.158 15 B_U23:A45_B B 23 ? B 45 ? 20 1 1 A G 24 1_555 A C 44 1_555 -0.561 -0.220 -0.126 -6.168 -3.589 1.730 16 B_G24:C44_B B 24 ? B 44 ? 19 1 1 A G 25 1_555 A C 43 1_555 0.050 -0.453 0.116 -6.755 -17.398 -3.870 17 B_G25:C43_B B 25 ? B 43 ? 19 1 1 A G 26 1_555 A U 42 1_555 -2.368 -0.632 -0.247 -18.954 -24.898 1.755 18 B_G26:U42_B B 26 ? B 42 ? 28 1 1 A A 27 1_555 A G 41 1_555 -2.345 1.593 -0.869 -16.350 -7.704 -21.669 19 B_A27:G41_B B 27 ? B 41 ? ? ? 1 A G 28 1_555 A G 40 1_555 3.354 1.021 0.612 -13.634 -12.841 -19.545 20 B_G28:G40_B B 28 ? B 40 ? ? ? 1 A G 30 1_555 A U 39 1_555 -2.352 -0.754 -0.201 -10.057 -10.604 -1.900 21 B_G30:U39_B B 30 ? B 39 ? 28 ? 1 A G 31 1_555 A C 38 1_555 0.355 -0.111 -0.287 -2.276 -6.594 3.537 22 B_G31:C38_B B 31 ? B 38 ? 19 1 1 A C 32 1_555 A G 37 1_555 0.347 -0.570 -0.241 5.569 -6.061 -0.762 23 B_C32:G37_B B 32 ? B 37 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 57 1_555 A G 2 1_555 A U 56 1_555 0.525 -2.218 3.020 -6.062 5.486 29.813 -5.068 -1.984 2.432 10.419 11.512 30.889 1 BB_G1G2:U56C57_BB B 1 ? B 57 ? B 2 ? B 56 ? 1 A G 2 1_555 A U 56 1_555 A G 3 1_555 A C 55 1_555 -0.003 -1.517 3.384 -1.061 7.478 36.227 -3.388 -0.137 3.021 11.868 1.684 36.980 2 BB_G2G3:C55U56_BB B 2 ? B 56 ? B 3 ? B 55 ? 1 A G 3 1_555 A C 55 1_555 A C 4 1_555 A G 54 1_555 -0.014 -1.861 3.112 -0.959 1.131 34.037 -3.346 -0.120 3.049 1.931 1.637 34.068 3 BB_G3C4:G54C55_BB B 3 ? B 55 ? B 4 ? B 54 ? 1 A G 12 1_555 A U 9 1_555 A G 13 1_555 A C 8 1_555 -1.875 -3.759 0.816 108.635 -131.420 82.014 -1.420 1.322 1.820 -66.965 -55.355 172.840 4 BB_G12G13:C8U9_BB B 12 ? B 9 ? B 13 ? B 8 ? 1 A G 13 1_555 A C 8 1_555 A G 14 1_555 A C 7 1_555 0.196 -1.988 3.754 8.223 13.081 31.722 -5.323 0.955 2.718 22.348 -14.050 35.198 5 BB_G13G14:C7C8_BB B 13 ? B 8 ? B 14 ? B 7 ? 1 A G 14 1_555 A C 7 1_555 A C 15 1_555 A G 6 1_555 0.460 -2.136 3.154 -3.706 1.572 27.224 -4.852 -1.817 2.941 3.316 7.818 27.514 6 BB_G14C15:G6C7_BB B 14 ? B 7 ? B 15 ? B 6 ? 1 A C 15 1_555 A G 6 1_555 A A 52 1_555 A U 16 1_555 -0.596 -3.852 -0.613 -133.936 -103.302 31.635 -1.486 -0.282 2.549 -54.060 70.091 169.558 7 BB_C15A52:U16G6_BB B 15 ? B 6 ? B 52 ? B 16 ? 1 A A 52 1_555 A U 16 1_555 A G 18 1_555 A C 53 1_555 -0.371 -4.057 -2.753 166.601 -45.773 -5.827 1.577 -1.843 -0.856 23.795 86.607 -172.784 8 BB_A52G18:C53U16_BB B 52 ? B 16 ? B 18 ? B 53 ? 1 A G 18 1_555 A C 53 1_555 A A 19 1_555 A U 50 1_555 2.755 -0.866 2.728 2.082 1.194 57.265 -0.958 -2.777 2.801 1.245 -2.172 57.311 9 BB_G18A19:U50C53_BB B 18 ? B 53 ? B 19 ? B 50 ? 1 A A 19 1_555 A U 50 1_555 A C 20 1_555 A G 49 1_555 0.430 -1.287 3.251 2.958 6.620 32.923 -3.257 -0.280 2.970 11.508 -5.141 33.691 10 BB_A19C20:G49U50_BB B 19 ? B 50 ? B 20 ? B 49 ? 1 A C 20 1_555 A G 49 1_555 A G 21 1_555 A C 48 1_555 0.229 -2.399 3.670 -2.024 8.038 27.249 -6.753 -0.937 2.836 16.581 4.176 28.459 11 BB_C20G21:C48G49_BB B 20 ? B 49 ? B 21 ? B 48 ? 1 A G 21 1_555 A C 48 1_555 A G 22 1_555 A C 46 1_555 0.981 -1.655 2.878 -5.928 13.447 43.368 -3.063 -1.675 2.155 17.604 7.761 45.676 12 BB_G21G22:C46C48_BB B 21 ? B 48 ? B 22 ? B 46 ? 1 A G 22 1_555 A C 46 1_555 A U 23 1_555 A A 45 1_555 0.588 -1.065 3.547 -5.479 2.845 38.611 -1.955 -1.578 3.352 4.269 8.222 39.083 13 BB_G22U23:A45C46_BB B 22 ? B 46 ? B 23 ? B 45 ? 1 A U 23 1_555 A A 45 1_555 A G 24 1_555 A C 44 1_555 0.187 -1.737 3.236 2.203 10.238 31.091 -4.684 0.014 2.558 18.455 -3.971 32.766 14 BB_U23G24:C44A45_BB B 23 ? B 45 ? B 24 ? B 44 ? 1 A G 24 1_555 A C 44 1_555 A G 25 1_555 A C 43 1_555 0.454 -2.158 3.463 2.330 -1.671 29.512 -3.836 -0.355 3.601 -3.270 -4.560 29.648 15 BB_G24G25:C43C44_BB B 24 ? B 44 ? B 25 ? B 43 ? 1 A G 25 1_555 A C 43 1_555 A G 26 1_555 A U 42 1_555 0.603 -2.353 3.288 3.497 17.310 27.220 -6.722 -0.577 1.606 32.769 -6.620 32.356 16 BB_G25G26:U42C43_BB B 25 ? B 43 ? B 26 ? B 42 ? 1 A G 26 1_555 A U 42 1_555 A A 27 1_555 A G 41 1_555 -2.023 -1.688 3.021 1.189 3.496 34.332 -3.325 3.573 2.771 5.902 -2.007 34.524 17 BB_G26A27:G41U42_BB B 26 ? B 42 ? B 27 ? B 41 ? 1 A A 27 1_555 A G 41 1_555 A G 28 1_555 A G 40 1_555 1.696 -2.301 3.577 -3.991 -13.200 30.939 -1.381 -3.696 3.963 -23.345 7.059 33.805 18 BB_A27G28:G40G41_BB B 27 ? B 41 ? B 28 ? B 40 ? 1 A G 28 1_555 A G 40 1_555 A G 30 1_555 A U 39 1_555 0.156 -3.801 2.934 7.040 7.056 23.028 -10.298 1.179 1.687 16.706 -16.669 25.066 19 BB_G28G30:U39G40_BB B 28 ? B 40 ? B 30 ? B 39 ? 1 A G 30 1_555 A U 39 1_555 A G 31 1_555 A C 38 1_555 -0.019 -1.470 3.170 1.321 3.321 43.370 -2.289 0.147 3.053 4.484 -1.784 43.510 20 BB_G30G31:C38U39_BB B 30 ? B 39 ? B 31 ? B 38 ? 1 A G 31 1_555 A C 38 1_555 A C 32 1_555 A G 37 1_555 -0.141 -1.164 3.230 -0.127 0.566 33.683 -2.099 0.222 3.211 0.977 0.218 33.687 21 BB_G31C32:G37C38_BB B 31 ? B 38 ? B 32 ? B 37 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'SULFATE ION' SO4 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1DK1 _pdbx_initial_refinement_model.details 'PDB entry 1DK1' #