HEADER LIPID TRANSPORT 11-MAR-02 1L6H TITLE SOLUTION STRUCTURE OF PLANT NSLTP2 PURIFIED FROM RICE (ORYZA SATIVA) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-SPECIFIC LIPID TRANSFER PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LTP2 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA; SOURCE 3 ORGANISM_COMMON: RICE; SOURCE 4 ORGANISM_TAXID: 4530 KEYWDS NSLTP2, PLANT LTP, LIPID TRANSFER, LIPID TRANSPORT EXPDTA SOLUTION NMR MDLTYP MINIMIZED AVERAGE AUTHOR D.SAMUEL,P.-C.LYU REVDAT 5 23-FEB-22 1L6H 1 REMARK REVDAT 4 24-FEB-09 1L6H 1 VERSN REVDAT 3 01-APR-03 1L6H 1 JRNL REVDAT 2 04-FEB-03 1L6H 1 REMARK REVDAT 1 02-OCT-02 1L6H 0 JRNL AUTH D.SAMUEL,Y.J.LIU,C.S.CHENG,P.C.LYU JRNL TITL SOLUTION STRUCTURE OF PLANT NONSPECIFIC LIPID TRANSFER JRNL TITL 2 PROTEIN-2 FROM RICE (ORYZA SATIVA). JRNL REF J.BIOL.CHEM. V. 277 35267 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 12011089 JRNL DOI 10.1074/JBC.M203113200 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.-J.LIU,D.SAMUEL,C.-H.LIN,P.-C.LYU REMARK 1 TITL PURIFICATION AND CHARACTERIZATION OF A NOVEL 7-KDA REMARK 1 TITL 2 NON-SPECIFIC LIPID TRANSFER PROTEIN-2 FROM RICE (ORYZA REMARK 1 TITL 3 SATIVA) REMARK 1 REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 294 535 2002 REMARK 1 REFN ISSN 0006-291X REMARK 1 DOI 10.1016/S0006-291X(02)00509-0 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.1, X-PLOR 3.8 REMARK 3 AUTHORS : BRUKER (XWINNMR), BRUGNER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE WAS BASED ON A TOTAL OF REMARK 3 862 DISTANCE CONSTRAINTS, 813 ARE NOE-DERIVED DISTANCE REMARK 3 CONSTRAINS, 30 DIESTANCE RESTRAINTS FROM HYDROGEN BONDS, 19 REMARK 3 DIHEDRAL ANGLE RESTRAINS. REMARK 4 REMARK 4 1L6H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-MAR-02. REMARK 100 THE DEPOSITION ID IS D_1000015685. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.4 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : DQF-COSY; 2D NOESY; TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.1, X-PLOR 3.8 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 11 CA - CB - SG ANGL. DEV. = 7.8 DEGREES REMARK 500 ALA A 40 CB - CA - C ANGL. DEV. = -9.1 DEGREES REMARK 500 CYS A 61 CA - CB - SG ANGL. DEV. = 7.2 DEGREES REMARK 500 CYS A 68 CA - CB - SG ANGL. DEV. = 15.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 3 35.73 -163.55 REMARK 500 THR A 9 -37.90 -36.42 REMARK 500 CYS A 11 14.04 -67.26 REMARK 500 ALA A 19 94.35 -63.01 REMARK 500 ARG A 44 -3.09 -145.01 REMARK 500 TYR A 48 -75.93 -86.66 REMARK 500 SER A 51 -82.36 -147.50 REMARK 500 ASN A 53 -33.43 -135.15 REMARK 500 ALA A 57 70.28 -159.86 REMARK 500 SER A 59 -112.44 112.04 REMARK 500 SER A 60 55.66 99.27 REMARK 500 ALA A 64 -24.02 143.56 REMARK 500 LEU A 65 67.46 76.66 REMARK 500 PRO A 66 29.87 -68.27 REMARK 500 CYS A 68 41.68 -85.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 50 SER A 51 128.89 REMARK 500 SER A 51 PRO A 52 -136.39 REMARK 500 SER A 59 SER A 60 -136.52 REMARK 500 ILE A 63 ALA A 64 122.14 REMARK 500 ALA A 64 LEU A 65 -147.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 PHE A 39 0.08 SIDE CHAIN REMARK 500 TYR A 45 0.13 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1L6H A 1 69 UNP P83210 NLTPX_ORYSA 1 69 SEQRES 1 A 69 ALA GLY CYS ASN ALA GLY GLN LEU THR VAL CYS THR GLY SEQRES 2 A 69 ALA ILE ALA GLY GLY ALA ARG PRO THR ALA ALA CYS CYS SEQRES 3 A 69 SER SER LEU ARG ALA GLN GLN GLY CYS PHE CYS GLN PHE SEQRES 4 A 69 ALA LYS ASP PRO ARG TYR GLY ARG TYR VAL ASN SER PRO SEQRES 5 A 69 ASN ALA ARG LYS ALA VAL SER SER CYS GLY ILE ALA LEU SEQRES 6 A 69 PRO THR CYS HIS HELIX 1 1 GLN A 7 ALA A 16 1 10 HELIX 2 2 THR A 22 ALA A 40 1 19 HELIX 3 3 ARG A 44 VAL A 49 1 6 HELIX 4 4 ASN A 53 ALA A 57 5 5 SSBOND 1 CYS A 3 CYS A 35 1555 1555 2.02 SSBOND 2 CYS A 11 CYS A 25 1555 1555 2.04 SSBOND 3 CYS A 26 CYS A 61 1555 1555 2.04 SSBOND 4 CYS A 37 CYS A 68 1555 1555 2.05 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000