data_1L9L # _entry.id 1L9L # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.285 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1L9L RCSB RCSB015767 WWPDB D_1000015767 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1L9L _pdbx_database_status.recvd_initial_deposition_date 2002-03-25 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Anderson, D.H.' 1 'Sawaya, M.R.' 2 'Cascio, D.' 3 'Ernst, W.' 4 'Krensky, A.' 5 'Modlin, R.' 6 'Eisenberg, D.' 7 # _citation.id primary _citation.title 'Granulysin Crystal Structure and a Structure-Derived Lytic Mechanism' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 325 _citation.page_first 355 _citation.page_last 365 _citation.year 2002 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12488100 _citation.pdbx_database_id_DOI '10.1016/S0022-2836(02)01234-2' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Anderson, D.H.' 1 primary 'Sawaya, M.R.' 2 primary 'Cascio, D.' 3 primary 'Ernst, W.' 4 primary 'Modlin, R.' 5 primary 'Krensky, A.' 6 primary 'Eisenberg, D.' 7 # _cell.entry_id 1L9L _cell.length_a 23.265 _cell.length_b 60.436 _cell.length_c 23.591 _cell.angle_alpha 90.00 _cell.angle_beta 90.99 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1L9L _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Granulysin 8679.092 1 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 4 ? ? ? ? 3 non-polymer syn '3[N-MORPHOLINO]PROPANE SULFONIC ACID' 209.263 1 ? ? ? ? 4 non-polymer syn ETHANOL 46.068 3 ? ? ? ? 5 water nat water 18.015 93 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'T-cell activation protein 519, NKG5 protein, Lymphokine LAG-2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GRDYRTCLTIVQKLKKMVDKPTQRSVSNAATRVCRTGRSRWRDVCRNFMRRYQSRVIQGLVAGETAQQICEDLR _entity_poly.pdbx_seq_one_letter_code_can GRDYRTCLTIVQKLKKMVDKPTQRSVSNAATRVCRTGRSRWRDVCRNFMRRYQSRVIQGLVAGETAQQICEDLR _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ARG n 1 3 ASP n 1 4 TYR n 1 5 ARG n 1 6 THR n 1 7 CYS n 1 8 LEU n 1 9 THR n 1 10 ILE n 1 11 VAL n 1 12 GLN n 1 13 LYS n 1 14 LEU n 1 15 LYS n 1 16 LYS n 1 17 MET n 1 18 VAL n 1 19 ASP n 1 20 LYS n 1 21 PRO n 1 22 THR n 1 23 GLN n 1 24 ARG n 1 25 SER n 1 26 VAL n 1 27 SER n 1 28 ASN n 1 29 ALA n 1 30 ALA n 1 31 THR n 1 32 ARG n 1 33 VAL n 1 34 CYS n 1 35 ARG n 1 36 THR n 1 37 GLY n 1 38 ARG n 1 39 SER n 1 40 ARG n 1 41 TRP n 1 42 ARG n 1 43 ASP n 1 44 VAL n 1 45 CYS n 1 46 ARG n 1 47 ASN n 1 48 PHE n 1 49 MET n 1 50 ARG n 1 51 ARG n 1 52 TYR n 1 53 GLN n 1 54 SER n 1 55 ARG n 1 56 VAL n 1 57 ILE n 1 58 GLN n 1 59 GLY n 1 60 LEU n 1 61 VAL n 1 62 ALA n 1 63 GLY n 1 64 GLU n 1 65 THR n 1 66 ALA n 1 67 GLN n 1 68 GLN n 1 69 ILE n 1 70 CYS n 1 71 GLU n 1 72 ASP n 1 73 LEU n 1 74 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell LYMPHOCYTE _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pET28a (Novagen)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code GNLY_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code GRDYRTCLTIVQKLKKMVDKPTQRSVSNAATRVCRTGRSRWRDVCRNFMRRYQSRVIQGLVAGETAQQICEDLR _struct_ref.pdbx_align_begin 63 _struct_ref.pdbx_db_accession P22749 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1L9L _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 74 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P22749 _struct_ref_seq.db_align_beg 63 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 136 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 74 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EOH non-polymer . ETHANOL ? 'C2 H6 O' 46.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MPO non-polymer . '3[N-MORPHOLINO]PROPANE SULFONIC ACID' ? 'C7 H15 N O4 S' 209.263 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1L9L _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.55 _exptl_crystal.density_percent_sol 20.6 _exptl_crystal.description ;SE-MET PATTERSON PEAKS WERE 10 SIGMA. PHASING FROM 2 SITES, PLUS INPUT OF SEQUENCE WAS ENOUGH FOR ARP/WARP TO AUTO-BUILD ALMOST THE ENTIRE STRUCTURE. ; # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pdbx_details ;3.1-3.2 M AMMONIUM SULFATE, 0.05 M N-MORPHOLINO PROPANESULFONIC ACID TITRATED TO PH 7 WITH SODIUM HYDROXIDE, 2.5% ETHANOL., VAPOR DIFFUSION, HANGING DROP, temperature 294K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4r' _diffrn_detector.pdbx_collection_date 2002-02-10 _diffrn_detector.details 'PARABOLIC COLLIMATING MIR' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97950 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X8C' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X8C _diffrn_source.pdbx_wavelength 0.97950 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1L9L _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 23.6 _reflns.d_resolution_high 0.92 _reflns.number_obs 35664 _reflns.number_all 35664 _reflns.percent_possible_obs 82.3 _reflns.pdbx_Rmerge_I_obs 0.037 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 48.3 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_Rrim_I_all ? # _reflns_shell.d_res_high 0.92 _reflns_shell.d_res_low 0.96 _reflns_shell.percent_possible_all 31.7 _reflns_shell.Rmerge_I_obs 0.304 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.8 _reflns_shell.pdbx_redundancy 3.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1368 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_Rrim_I_all ? # _refine.entry_id 1L9L _refine.ls_number_reflns_obs 33317 _refine.ls_number_reflns_all 35633 _refine.pdbx_ls_sigma_I -3 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 23.59 _refine.ls_d_res_high 0.92 _refine.ls_percent_reflns_obs 79.2 _refine.ls_R_factor_obs 0.138 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.137 _refine.ls_R_factor_R_free 0.1898 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5 _refine.ls_number_reflns_R_free 1812 _refine.ls_number_parameters 7094 _refine.ls_number_restraints 9130 _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201-228' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method 'FREE R' _refine.details ;WATER MOLECULES WITH APPARENT COLLISIONS: NOT ALL WATERS IN THE MODEL CAN BE PRESENT SIMULTANEOUSLY. HOH 1021 IN POSITIONS A AND B CORRESPONDS TO ASP 72 IN CONFORMATIONS A AND B, RESPECTIVELY. HOH 1041 IN POSITIONS A AND B CORRESPONDS TO GLN 12 IN CONFORMATIONS A AND B, RESPECTIVELY. HOH 1080 IN POSITION B CORRESPONDS TO ASP 43 IN CONFORMATION B; IT WOULD COLLIDE WITH CONFORMATION A. GLN 12 AND ASP 72 OF A SYMMETRY-RELATED MOLECULE CAN SIMULTANEOUSLY OCCUPY THEIR CONFORMATIONS A, ALONG WITH HOH 1021A AND 1041A, BUT EITHER SIDE CHAIN IN ITS CONFORMATION A WILL EXCLUDE HOH 1021B. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH & HUBER' _refine.pdbx_stereochem_target_val_spec_case ;SULFATE AND ETHANOL COORDINATES WERE OBTAINED FROM CAMBRIDGE CRYSTAL STRUCTURE DATABASE, AND USED AS TARGETS. N-MORPHOLINO PROPANESULFONATE COORDINATES WERE OBTAINED FROM HIC-UP AND SYMMETRIZED FOR TARGET VALUES ; _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1L9L _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 13 _refine_analyze.occupancy_sum_hydrogen 620.82 _refine_analyze.occupancy_sum_non_hydrogen 727.70 _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1331 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 33 _refine_hist.number_atoms_solvent 104 _refine_hist.number_atoms_total 1468 _refine_hist.d_res_high 0.92 _refine_hist.d_res_low 23.59 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.017 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.038 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.014 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.0240 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.083 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.108 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.076 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.006 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.052 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.075 ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_all _refine_ls_shell.pdbx_refine_id _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs 10 0.92 1.00 . 0.19 . . . . . 3637 . . 'X-RAY DIFFRACTION' . . 10 1.00 1.05 . 0.141 . . . . . 3548 . . 'X-RAY DIFFRACTION' . . 10 1.05 1.10 . 0.124 . . . . . 3616 . . 'X-RAY DIFFRACTION' . . 10 1.10 1.16 . 0.115 . . . . . 3470 . . 'X-RAY DIFFRACTION' . . 10 1.16 1.23 . 0.11 . . . . . 3537 . . 'X-RAY DIFFRACTION' . . 10 1.23 1.33 . 0.108 . . . . . 3575 . . 'X-RAY DIFFRACTION' . . 10 1.33 1.47 . 0.11 . . . . . 3557 . . 'X-RAY DIFFRACTION' . . 10 1.47 1.69 . 0.113 . . . . . 3585 . . 'X-RAY DIFFRACTION' . . 10 1.69 2.12 . 0.124 . . . . . 3513 . . 'X-RAY DIFFRACTION' . . 10 2.12 30 . 0.17 . . . . . 3595 . . 'X-RAY DIFFRACTION' . . # _pdbx_refine.entry_id 1L9L _pdbx_refine.R_factor_all_no_cutoff 0.138 _pdbx_refine.R_factor_obs_no_cutoff 0.137 _pdbx_refine.free_R_factor_no_cutoff 0.1898 _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 5 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 1812 _pdbx_refine.R_factor_all_4sig_cutoff 0.136 _pdbx_refine.R_factor_obs_4sig_cutoff 0.135 _pdbx_refine.free_R_factor_4sig_cutoff 0.1877 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 4.7 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 1689 _pdbx_refine.number_reflns_obs_4sig_cutoff 33317 _pdbx_refine.number_reflns_obs_no_cutoff ? _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _struct.entry_id 1L9L _struct.title 'GRANULYSIN FROM HUMAN CYTOLYTIC T LYMPHOCYTES' _struct.pdbx_descriptor GRANULYSIN _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1L9L _struct_keywords.pdbx_keywords 'ANTIMICROBIAL PROTEIN' _struct_keywords.text 'GRANULYSIN, SAPOSIN FOLD, MEMBRANE-LYTIC, ANTIMICROBIAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 1 ? VAL A 18 ? GLY A 1 VAL A 18 1 ? 18 HELX_P HELX_P2 2 THR A 22 ? VAL A 33 ? THR A 22 VAL A 33 1 ? 12 HELX_P HELX_P3 3 CYS A 34 ? THR A 36 ? CYS A 34 THR A 36 5 ? 3 HELX_P HELX_P4 4 ARG A 38 ? ALA A 62 ? ARG A 38 ALA A 62 1 ? 25 HELX_P HELX_P5 5 THR A 65 ? ARG A 74 ? THR A 65 ARG A 74 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 7 SG ? ? ? 1_555 A CYS 70 SG ? ? A CYS 7 A CYS 70 1_555 ? ? ? ? ? ? ? 2.065 ? disulf2 disulf ? ? A CYS 34 SG ? ? ? 1_555 A CYS 45 SG ? ? A CYS 34 A CYS 45 1_555 ? ? ? ? ? ? ? 2.061 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE SO4 A 81' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE SO4 A 82' AC3 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE SO4 A 83' AC4 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE SO4 A 84' AC5 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE MPO A 111' AC6 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE EOH A 101' AC7 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE EOH A 102' AC8 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE EOH A 103' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 SER A 39 ? SER A 39 . ? 1_555 ? 2 AC1 7 ARG A 42 ? ARG A 42 . ? 1_555 ? 3 AC1 7 ARG A 51 ? ARG A 51 . ? 1_554 ? 4 AC1 7 HOH J . ? HOH A 1011 . ? 1_555 ? 5 AC1 7 HOH J . ? HOH A 1045 . ? 1_555 ? 6 AC1 7 HOH J . ? HOH A 1076 . ? 1_555 ? 7 AC1 7 HOH J . ? HOH A 1100 . ? 1_555 ? 8 AC2 6 ARG A 2 ? ARG A 2 . ? 1_555 ? 9 AC2 6 ARG A 38 ? ARG A 38 . ? 1_556 ? 10 AC2 6 ASN A 47 ? ASN A 47 . ? 1_555 ? 11 AC2 6 ARG A 51 ? ARG A 51 . ? 1_555 ? 12 AC2 6 HOH J . ? HOH A 1001 . ? 1_555 ? 13 AC2 6 HOH J . ? HOH A 1091 . ? 1_555 ? 14 AC3 3 ARG A 2 ? ARG A 2 . ? 1_555 ? 15 AC3 3 HOH J . ? HOH A 1061 . ? 1_555 ? 16 AC3 3 HOH J . ? HOH A 1099 . ? 1_555 ? 17 AC4 3 ARG A 42 ? ARG A 42 . ? 1_555 ? 18 AC4 3 ARG A 46 ? ARG A 46 . ? 1_555 ? 19 AC4 3 HOH J . ? HOH A 1102 . ? 1_555 ? 20 AC5 6 GLY A 1 ? GLY A 1 . ? 1_555 ? 21 AC5 6 ARG A 35 ? ARG A 35 . ? 1_456 ? 22 AC5 6 ARG A 42 ? ARG A 42 . ? 1_456 ? 23 AC5 6 ARG A 50 ? ARG A 50 . ? 1_455 ? 24 AC5 6 LEU A 73 ? LEU A 73 . ? 1_555 ? 25 AC5 6 ARG A 74 ? ARG A 74 . ? 1_555 ? 26 AC6 3 LYS A 15 ? LYS A 15 . ? 1_555 ? 27 AC6 3 VAL A 18 ? VAL A 18 . ? 1_555 ? 28 AC6 3 ASP A 19 ? ASP A 19 . ? 1_555 ? 29 AC7 5 ARG A 55 ? ARG A 55 . ? 1_555 ? 30 AC7 5 ILE A 69 ? ILE A 69 . ? 1_555 ? 31 AC7 5 ASP A 72 ? ASP A 72 . ? 1_555 ? 32 AC7 5 LEU A 73 ? LEU A 73 . ? 1_555 ? 33 AC7 5 HOH J . ? HOH A 1028 . ? 1_555 ? 34 AC8 5 LYS A 16 ? LYS A 16 . ? 1_555 ? 35 AC8 5 GLN A 58 ? GLN A 58 . ? 1_554 ? 36 AC8 5 HOH J . ? HOH A 1018 . ? 1_554 ? 37 AC8 5 HOH J . ? HOH A 1064 . ? 1_554 ? 38 AC8 5 HOH J . ? HOH A 1072 . ? 1_554 ? # _database_PDB_matrix.entry_id 1L9L _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _atom_sites.entry_id 1L9L _atom_sites.fract_transf_matrix[1][1] 0.042983 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000743 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016546 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.042395 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 ARG 2 2 2 ARG ARG A . n A 1 3 ASP 3 3 3 ASP ASP A . n A 1 4 TYR 4 4 4 TYR TYR A . n A 1 5 ARG 5 5 5 ARG ARG A . n A 1 6 THR 6 6 6 THR THR A . n A 1 7 CYS 7 7 7 CYS CYS A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 THR 9 9 9 THR THR A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 GLN 12 12 12 GLN GLN A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 MET 17 17 17 MET MET A . n A 1 18 VAL 18 18 18 VAL VAL A . n A 1 19 ASP 19 19 19 ASP ASP A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 PRO 21 21 21 PRO PRO A . n A 1 22 THR 22 22 22 THR THR A . n A 1 23 GLN 23 23 23 GLN GLN A . n A 1 24 ARG 24 24 24 ARG ARG A . n A 1 25 SER 25 25 25 SER SER A . n A 1 26 VAL 26 26 26 VAL VAL A . n A 1 27 SER 27 27 27 SER SER A . n A 1 28 ASN 28 28 28 ASN ASN A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 ARG 32 32 32 ARG ARG A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 CYS 34 34 34 CYS CYS A . n A 1 35 ARG 35 35 35 ARG ARG A . n A 1 36 THR 36 36 36 THR THR A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 ARG 38 38 38 ARG ARG A . n A 1 39 SER 39 39 39 SER SER A . n A 1 40 ARG 40 40 40 ARG ARG A . n A 1 41 TRP 41 41 41 TRP TRP A . n A 1 42 ARG 42 42 42 ARG ARG A . n A 1 43 ASP 43 43 43 ASP ASP A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 CYS 45 45 45 CYS CYS A . n A 1 46 ARG 46 46 46 ARG ARG A . n A 1 47 ASN 47 47 47 ASN ASN A . n A 1 48 PHE 48 48 48 PHE PHE A . n A 1 49 MET 49 49 49 MET MET A . n A 1 50 ARG 50 50 50 ARG ARG A . n A 1 51 ARG 51 51 51 ARG ARG A . n A 1 52 TYR 52 52 52 TYR TYR A . n A 1 53 GLN 53 53 53 GLN GLN A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 ARG 55 55 55 ARG ARG A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 ILE 57 57 57 ILE ILE A . n A 1 58 GLN 58 58 58 GLN GLN A . n A 1 59 GLY 59 59 59 GLY GLY A . n A 1 60 LEU 60 60 60 LEU LEU A . n A 1 61 VAL 61 61 61 VAL VAL A . n A 1 62 ALA 62 62 62 ALA ALA A . n A 1 63 GLY 63 63 63 GLY GLY A . n A 1 64 GLU 64 64 64 GLU GLU A . n A 1 65 THR 65 65 65 THR THR A . n A 1 66 ALA 66 66 66 ALA ALA A . n A 1 67 GLN 67 67 67 GLN GLN A . n A 1 68 GLN 68 68 68 GLN GLN A . n A 1 69 ILE 69 69 69 ILE ILE A . n A 1 70 CYS 70 70 70 CYS CYS A . n A 1 71 GLU 71 71 71 GLU GLU A . n A 1 72 ASP 72 72 72 ASP ASP A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 ARG 74 74 74 ARG ARG A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 81 81 SO4 SO4 A . C 2 SO4 1 82 82 SO4 SO4 A . D 2 SO4 1 83 83 SO4 SO4 A . E 2 SO4 1 84 84 SO4 SO4 A . F 3 MPO 1 111 111 MPO MPO A . G 4 EOH 1 101 101 EOH EOH A . H 4 EOH 1 102 102 EOH EOH A . I 4 EOH 1 103 103 EOH EOH A . J 5 HOH 1 1001 1001 HOH HOH A . J 5 HOH 2 1002 1002 HOH HOH A . J 5 HOH 3 1003 1003 HOH HOH A . J 5 HOH 4 1004 1004 HOH HOH A . J 5 HOH 5 1005 1005 HOH HOH A . J 5 HOH 6 1006 1006 HOH HOH A . J 5 HOH 7 1007 1007 HOH HOH A . J 5 HOH 8 1008 1008 HOH HOH A . J 5 HOH 9 1009 1009 HOH HOH A . J 5 HOH 10 1010 1010 HOH HOH A . J 5 HOH 11 1011 1011 HOH HOH A . J 5 HOH 12 1013 1013 HOH HOH A . J 5 HOH 13 1014 1014 HOH HOH A . J 5 HOH 14 1015 1015 HOH HOH A . J 5 HOH 15 1016 1016 HOH HOH A . J 5 HOH 16 1017 1017 HOH HOH A . J 5 HOH 17 1018 1018 HOH HOH A . J 5 HOH 18 1019 1019 HOH HOH A . J 5 HOH 19 1020 1020 HOH HOH A . J 5 HOH 20 1021 1021 HOH HOH A . J 5 HOH 21 1022 1022 HOH HOH A . J 5 HOH 22 1023 1023 HOH HOH A . J 5 HOH 23 1024 1024 HOH HOH A . J 5 HOH 24 1025 1025 HOH HOH A . J 5 HOH 25 1026 1026 HOH HOH A . J 5 HOH 26 1027 1027 HOH HOH A . J 5 HOH 27 1028 1028 HOH HOH A . J 5 HOH 28 1029 1029 HOH HOH A . J 5 HOH 29 1030 1030 HOH HOH A . J 5 HOH 30 1031 1031 HOH HOH A . J 5 HOH 31 1033 1033 HOH HOH A . J 5 HOH 32 1034 1034 HOH HOH A . J 5 HOH 33 1036 1036 HOH HOH A . J 5 HOH 34 1037 1037 HOH HOH A . J 5 HOH 35 1039 1039 HOH HOH A . J 5 HOH 36 1040 1040 HOH HOH A . J 5 HOH 37 1041 1041 HOH HOH A . J 5 HOH 38 1043 1043 HOH HOH A . J 5 HOH 39 1044 1044 HOH HOH A . J 5 HOH 40 1045 1045 HOH HOH A . J 5 HOH 41 1047 1047 HOH HOH A . J 5 HOH 42 1048 1048 HOH HOH A . J 5 HOH 43 1049 1049 HOH HOH A . J 5 HOH 44 1050 1050 HOH HOH A . J 5 HOH 45 1052 1052 HOH HOH A . J 5 HOH 46 1053 1053 HOH HOH A . J 5 HOH 47 1054 1054 HOH HOH A . J 5 HOH 48 1055 1055 HOH HOH A . J 5 HOH 49 1056 1056 HOH HOH A . J 5 HOH 50 1057 1057 HOH HOH A . J 5 HOH 51 1058 1058 HOH HOH A . J 5 HOH 52 1059 1059 HOH HOH A . J 5 HOH 53 1060 1060 HOH HOH A . J 5 HOH 54 1061 1061 HOH HOH A . J 5 HOH 55 1062 1062 HOH HOH A . J 5 HOH 56 1063 1063 HOH HOH A . J 5 HOH 57 1064 1064 HOH HOH A . J 5 HOH 58 1066 1066 HOH HOH A . J 5 HOH 59 1067 1067 HOH HOH A . J 5 HOH 60 1068 1068 HOH HOH A . J 5 HOH 61 1069 1069 HOH HOH A . J 5 HOH 62 1070 1070 HOH HOH A . J 5 HOH 63 1071 1071 HOH HOH A . J 5 HOH 64 1072 1072 HOH HOH A . J 5 HOH 65 1073 1073 HOH HOH A . J 5 HOH 66 1075 1075 HOH HOH A . J 5 HOH 67 1076 1076 HOH HOH A . J 5 HOH 68 1077 1077 HOH HOH A . J 5 HOH 69 1078 1078 HOH HOH A . J 5 HOH 70 1079 1079 HOH HOH A . J 5 HOH 71 1080 1080 HOH HOH A . J 5 HOH 72 1081 1081 HOH HOH A . J 5 HOH 73 1082 1082 HOH HOH A . J 5 HOH 74 1083 1083 HOH HOH A . J 5 HOH 75 1084 1084 HOH HOH A . J 5 HOH 76 1085 1085 HOH HOH A . J 5 HOH 77 1086 1086 HOH HOH A . J 5 HOH 78 1088 1088 HOH HOH A . J 5 HOH 79 1089 1089 HOH HOH A . J 5 HOH 80 1090 1090 HOH HOH A . J 5 HOH 81 1091 1091 HOH HOH A . J 5 HOH 82 1092 1092 HOH HOH A . J 5 HOH 83 1094 1094 HOH HOH A . J 5 HOH 84 1095 1095 HOH HOH A . J 5 HOH 85 1096 1096 HOH HOH A . J 5 HOH 86 1097 1097 HOH HOH A . J 5 HOH 87 1098 1098 HOH HOH A . J 5 HOH 88 1099 1099 HOH HOH A . J 5 HOH 89 1100 1100 HOH HOH A . J 5 HOH 90 1102 1102 HOH HOH A . J 5 HOH 91 1103 1103 HOH HOH A . J 5 HOH 92 1106 1106 HOH HOH A . J 5 HOH 93 1107 1107 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-11-06 2 'Structure model' 1 1 2008-04-28 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 4 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category refine # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 4 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_refine.pdbx_method_to_determine_struct' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 SHELXD phasing . ? 3 MLPHARE phasing . ? 4 DM 'model building' . ? 5 ARP/wARP 'model building' . ? 6 SHELXL-97 refinement . ? 7 DM phasing . ? 8 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CD A ARG 2 ? A NE A ARG 2 ? A CZ A ARG 2 ? A 142.43 123.60 18.83 1.40 N 2 1 NE A ARG 2 ? A CZ A ARG 2 ? A NH1 A ARG 2 ? A 123.75 120.30 3.45 0.50 N 3 1 NE A ARG 2 ? B CZ A ARG 2 ? B NH2 A ARG 2 ? B 126.57 120.30 6.27 0.50 N 4 1 NE A ARG 5 ? ? CZ A ARG 5 ? ? NH2 A ARG 5 ? ? 124.70 120.30 4.40 0.50 N 5 1 NE A ARG 24 ? ? CZ A ARG 24 ? ? NH1 A ARG 24 ? ? 123.49 120.30 3.19 0.50 N 6 1 CD A ARG 35 ? A NE A ARG 35 ? A CZ A ARG 35 ? A 133.46 123.60 9.86 1.40 N 7 1 NE A ARG 35 ? A CZ A ARG 35 ? A NH1 A ARG 35 ? A 127.71 120.30 7.41 0.50 N 8 1 NE A ARG 35 ? A CZ A ARG 35 ? A NH2 A ARG 35 ? A 116.55 120.30 -3.75 0.50 N 9 1 NE A ARG 40 ? ? CZ A ARG 40 ? ? NH1 A ARG 40 ? ? 127.01 120.30 6.71 0.50 N 10 1 NE A ARG 40 ? ? CZ A ARG 40 ? ? NH2 A ARG 40 ? ? 115.19 120.30 -5.11 0.50 N 11 1 CB A ASP 43 ? B CG A ASP 43 ? B OD1 A ASP 43 ? B 108.90 118.30 -9.40 0.90 N 12 1 CB A ASP 43 ? B CG A ASP 43 ? B OD2 A ASP 43 ? B 125.17 118.30 6.87 0.90 N 13 1 CD A ARG 46 ? A NE A ARG 46 ? A CZ A ARG 46 ? A 138.76 123.60 15.16 1.40 N 14 1 NE A ARG 46 ? A CZ A ARG 46 ? A NH1 A ARG 46 ? A 125.38 120.30 5.08 0.50 N 15 1 NE A ARG 46 ? B CZ A ARG 46 ? B NH1 A ARG 46 ? B 126.98 120.30 6.68 0.50 N 16 1 NE A ARG 46 ? A CZ A ARG 46 ? A NH2 A ARG 46 ? A 116.52 120.30 -3.78 0.50 N 17 1 NE A ARG 46 ? B CZ A ARG 46 ? B NH2 A ARG 46 ? B 115.37 120.30 -4.93 0.50 N 18 1 CD A ARG 50 ? ? NE A ARG 50 ? ? CZ A ARG 50 ? ? 115.04 123.60 -8.56 1.40 N 19 1 NE A ARG 50 ? ? CZ A ARG 50 ? ? NH1 A ARG 50 ? ? 125.41 120.30 5.11 0.50 N 20 1 NE A ARG 50 ? ? CZ A ARG 50 ? ? NH2 A ARG 50 ? ? 113.18 120.30 -7.12 0.50 N 21 1 NE A ARG 55 ? ? CZ A ARG 55 ? ? NH1 A ARG 55 ? ? 123.36 120.30 3.06 0.50 N 22 1 OD1 A ASP 72 ? A CG A ASP 72 ? A OD2 A ASP 72 ? A 111.82 123.30 -11.48 1.90 N 23 1 CB A ASP 72 ? A CG A ASP 72 ? A OD2 A ASP 72 ? A 131.59 118.30 13.29 0.90 N 24 1 NE A ARG 74 ? ? CZ A ARG 74 ? ? NH2 A ARG 74 ? ? 116.93 120.30 -3.37 0.50 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 19 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -91.68 _pdbx_validate_torsion.psi -90.14 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 '3[N-MORPHOLINO]PROPANE SULFONIC ACID' MPO 4 ETHANOL EOH 5 water HOH #