data_1LDP # _entry.id 1LDP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1LDP pdb_00001ldp 10.2210/pdb1ldp/pdb WWPDB D_1000174671 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1LDP _pdbx_database_status.recvd_initial_deposition_date 1998-03-15 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Speir, J.A.' 1 'Wilson, I.A.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Structural basis of 2C TCR allorecognition of H-2Ld peptide complexes.' Immunity 8 553 562 1998 IUNIEH US 1074-7613 2048 ? 9620676 '10.1016/S1074-7613(00)80560-9' 1 'Structural Basis of Plasticity in T Cell Receptor Recognition of a Self Peptide-Mhc Antigen' Science 279 1166 ? 1998 SCIEAS US 0036-8075 0038 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Speir, J.A.' 1 ? primary 'Garcia, K.C.' 2 ? primary 'Brunmark, A.' 3 ? primary 'Degano, M.' 4 ? primary 'Peterson, P.A.' 5 ? primary 'Teyton, L.' 6 ? primary 'Wilson, I.A.' 7 ? 1 'Garcia, K.C.' 8 ? 1 'Degano, M.' 9 ? 1 'Pease, L.R.' 10 ? 1 'Huang, M.' 11 ? 1 'Peterson, P.A.' 12 ? 1 'Teyton, L.' 13 ? 1 'Wilson, I.A.' 14 ? # _cell.entry_id 1LDP _cell.length_a 72.400 _cell.length_b 48.980 _cell.length_c 84.060 _cell.angle_alpha 90.00 _cell.angle_beta 97.95 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LDP _symmetry.space_group_name_H-M 'P 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 3 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'MHC CLASS I H-2LD' 31388.924 1 ? 'HEAVY CHAIN TRUNCATED AFTER RESIDUE 274, B2M, LIGHT CHAIN TRUNCATED AFTER RESIDUE 99' 'CHAIN H IS THE HEAVY CHAIN, PEPTIDE BINDING DOMAIN, CHAIN L IS THE LIGHT CHAIN OR BETA-2-MICROGLOBULIN' 'ASPARAGINE LINKED N-ACETYL-GLUCOSAMINE CARBOHYDRATES AT CHAIN H, N86 AND N176' 2 polymer man 'MHC CLASS I H-2LD' 11704.359 1 ? 'HEAVY CHAIN TRUNCATED AFTER RESIDUE 274, B2M, LIGHT CHAIN TRUNCATED AFTER RESIDUE 99' 'CHAIN H IS THE HEAVY CHAIN, PEPTIDE BINDING DOMAIN, CHAIN L IS THE LIGHT CHAIN OR BETA-2-MICROGLOBULIN' 'ASPARAGINE LINKED N-ACETYL-GLUCOSAMINE CARBOHYDRATES AT CHAIN H, N86 AND N176' 3 polymer nat PEPTIDE 743.870 1 ? ? 'CHAIN P IS A PEPTIDE, CHAIN Q IS A MODEL OF PEPTIDE QL9 DERIVED FROM P' ? 4 polymer nat PEPTIDE 1063.202 1 ? ? 'CHAIN P IS A PEPTIDE, CHAIN Q IS A MODEL OF PEPTIDE QL9 DERIVED FROM P' ? 5 branched man '2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 424.401 1 ? ? ? ? 6 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GPHSMRYFETAVSRPGLGEPRYISVGYVDNKEFVRFDSDAENPRYEPQAPWMEQEGPEYWERITQIAKGQEQWFRVNLRT LLGYYNQSAGGTHTLQWMYGCDVGSDGRLLRGYEQFAYDGCDYIALNEDLKTWTAADMAAQITRRKWEQAGAAEYYRAYL EGECVEWLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGT FQKWASVVVPLGKEQNYTCRVYHEGLPEPLTL ; ;GPHSMRYFETAVSRPGLGEPRYISVGYVDNKEFVRFDSDAENPRYEPQAPWMEQEGPEYWERITQIAKGQEQWFRVNLRT LLGYYNQSAGGTHTLQWMYGCDVGSDGRLLRGYEQFAYDGCDYIALNEDLKTWTAADMAAQITRRKWEQAGAAEYYRAYL EGECVEWLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGT FQKWASVVVPLGKEQNYTCRVYHEGLPEPLTL ; H ? 2 'polypeptide(L)' no no ;IQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYAC RVKHDSMAEPKTVYWDRDM ; ;IQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYAC RVKHDSMAEPKTVYWDRDM ; L ? 3 'polypeptide(L)' no no APAAAAAAM APAAAAAAM P ? 4 'polypeptide(L)' no no QLSPFPFDL QLSPFPFDL Q ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 HIS n 1 4 SER n 1 5 MET n 1 6 ARG n 1 7 TYR n 1 8 PHE n 1 9 GLU n 1 10 THR n 1 11 ALA n 1 12 VAL n 1 13 SER n 1 14 ARG n 1 15 PRO n 1 16 GLY n 1 17 LEU n 1 18 GLY n 1 19 GLU n 1 20 PRO n 1 21 ARG n 1 22 TYR n 1 23 ILE n 1 24 SER n 1 25 VAL n 1 26 GLY n 1 27 TYR n 1 28 VAL n 1 29 ASP n 1 30 ASN n 1 31 LYS n 1 32 GLU n 1 33 PHE n 1 34 VAL n 1 35 ARG n 1 36 PHE n 1 37 ASP n 1 38 SER n 1 39 ASP n 1 40 ALA n 1 41 GLU n 1 42 ASN n 1 43 PRO n 1 44 ARG n 1 45 TYR n 1 46 GLU n 1 47 PRO n 1 48 GLN n 1 49 ALA n 1 50 PRO n 1 51 TRP n 1 52 MET n 1 53 GLU n 1 54 GLN n 1 55 GLU n 1 56 GLY n 1 57 PRO n 1 58 GLU n 1 59 TYR n 1 60 TRP n 1 61 GLU n 1 62 ARG n 1 63 ILE n 1 64 THR n 1 65 GLN n 1 66 ILE n 1 67 ALA n 1 68 LYS n 1 69 GLY n 1 70 GLN n 1 71 GLU n 1 72 GLN n 1 73 TRP n 1 74 PHE n 1 75 ARG n 1 76 VAL n 1 77 ASN n 1 78 LEU n 1 79 ARG n 1 80 THR n 1 81 LEU n 1 82 LEU n 1 83 GLY n 1 84 TYR n 1 85 TYR n 1 86 ASN n 1 87 GLN n 1 88 SER n 1 89 ALA n 1 90 GLY n 1 91 GLY n 1 92 THR n 1 93 HIS n 1 94 THR n 1 95 LEU n 1 96 GLN n 1 97 TRP n 1 98 MET n 1 99 TYR n 1 100 GLY n 1 101 CYS n 1 102 ASP n 1 103 VAL n 1 104 GLY n 1 105 SER n 1 106 ASP n 1 107 GLY n 1 108 ARG n 1 109 LEU n 1 110 LEU n 1 111 ARG n 1 112 GLY n 1 113 TYR n 1 114 GLU n 1 115 GLN n 1 116 PHE n 1 117 ALA n 1 118 TYR n 1 119 ASP n 1 120 GLY n 1 121 CYS n 1 122 ASP n 1 123 TYR n 1 124 ILE n 1 125 ALA n 1 126 LEU n 1 127 ASN n 1 128 GLU n 1 129 ASP n 1 130 LEU n 1 131 LYS n 1 132 THR n 1 133 TRP n 1 134 THR n 1 135 ALA n 1 136 ALA n 1 137 ASP n 1 138 MET n 1 139 ALA n 1 140 ALA n 1 141 GLN n 1 142 ILE n 1 143 THR n 1 144 ARG n 1 145 ARG n 1 146 LYS n 1 147 TRP n 1 148 GLU n 1 149 GLN n 1 150 ALA n 1 151 GLY n 1 152 ALA n 1 153 ALA n 1 154 GLU n 1 155 TYR n 1 156 TYR n 1 157 ARG n 1 158 ALA n 1 159 TYR n 1 160 LEU n 1 161 GLU n 1 162 GLY n 1 163 GLU n 1 164 CYS n 1 165 VAL n 1 166 GLU n 1 167 TRP n 1 168 LEU n 1 169 HIS n 1 170 ARG n 1 171 TYR n 1 172 LEU n 1 173 LYS n 1 174 ASN n 1 175 GLY n 1 176 ASN n 1 177 ALA n 1 178 THR n 1 179 LEU n 1 180 LEU n 1 181 ARG n 1 182 THR n 1 183 ASP n 1 184 SER n 1 185 PRO n 1 186 LYS n 1 187 ALA n 1 188 HIS n 1 189 VAL n 1 190 THR n 1 191 HIS n 1 192 HIS n 1 193 PRO n 1 194 ARG n 1 195 SER n 1 196 LYS n 1 197 GLY n 1 198 GLU n 1 199 VAL n 1 200 THR n 1 201 LEU n 1 202 ARG n 1 203 CYS n 1 204 TRP n 1 205 ALA n 1 206 LEU n 1 207 GLY n 1 208 PHE n 1 209 TYR n 1 210 PRO n 1 211 ALA n 1 212 ASP n 1 213 ILE n 1 214 THR n 1 215 LEU n 1 216 THR n 1 217 TRP n 1 218 GLN n 1 219 LEU n 1 220 ASN n 1 221 GLY n 1 222 GLU n 1 223 GLU n 1 224 LEU n 1 225 THR n 1 226 GLN n 1 227 ASP n 1 228 MET n 1 229 GLU n 1 230 LEU n 1 231 VAL n 1 232 GLU n 1 233 THR n 1 234 ARG n 1 235 PRO n 1 236 ALA n 1 237 GLY n 1 238 ASP n 1 239 GLY n 1 240 THR n 1 241 PHE n 1 242 GLN n 1 243 LYS n 1 244 TRP n 1 245 ALA n 1 246 SER n 1 247 VAL n 1 248 VAL n 1 249 VAL n 1 250 PRO n 1 251 LEU n 1 252 GLY n 1 253 LYS n 1 254 GLU n 1 255 GLN n 1 256 ASN n 1 257 TYR n 1 258 THR n 1 259 CYS n 1 260 ARG n 1 261 VAL n 1 262 TYR n 1 263 HIS n 1 264 GLU n 1 265 GLY n 1 266 LEU n 1 267 PRO n 1 268 GLU n 1 269 PRO n 1 270 LEU n 1 271 THR n 1 272 LEU n 2 1 ILE n 2 2 GLN n 2 3 LYS n 2 4 THR n 2 5 PRO n 2 6 GLN n 2 7 ILE n 2 8 GLN n 2 9 VAL n 2 10 TYR n 2 11 SER n 2 12 ARG n 2 13 HIS n 2 14 PRO n 2 15 PRO n 2 16 GLU n 2 17 ASN n 2 18 GLY n 2 19 LYS n 2 20 PRO n 2 21 ASN n 2 22 ILE n 2 23 LEU n 2 24 ASN n 2 25 CYS n 2 26 TYR n 2 27 VAL n 2 28 THR n 2 29 GLN n 2 30 PHE n 2 31 HIS n 2 32 PRO n 2 33 PRO n 2 34 HIS n 2 35 ILE n 2 36 GLU n 2 37 ILE n 2 38 GLN n 2 39 MET n 2 40 LEU n 2 41 LYS n 2 42 ASN n 2 43 GLY n 2 44 LYS n 2 45 LYS n 2 46 ILE n 2 47 PRO n 2 48 LYS n 2 49 VAL n 2 50 GLU n 2 51 MET n 2 52 SER n 2 53 ASP n 2 54 MET n 2 55 SER n 2 56 PHE n 2 57 SER n 2 58 LYS n 2 59 ASP n 2 60 TRP n 2 61 SER n 2 62 PHE n 2 63 TYR n 2 64 ILE n 2 65 LEU n 2 66 ALA n 2 67 HIS n 2 68 THR n 2 69 GLU n 2 70 PHE n 2 71 THR n 2 72 PRO n 2 73 THR n 2 74 GLU n 2 75 THR n 2 76 ASP n 2 77 THR n 2 78 TYR n 2 79 ALA n 2 80 CYS n 2 81 ARG n 2 82 VAL n 2 83 LYS n 2 84 HIS n 2 85 ASP n 2 86 SER n 2 87 MET n 2 88 ALA n 2 89 GLU n 2 90 PRO n 2 91 LYS n 2 92 THR n 2 93 VAL n 2 94 TYR n 2 95 TRP n 2 96 ASP n 2 97 ARG n 2 98 ASP n 2 99 MET n 3 1 ALA n 3 2 PRO n 3 3 ALA n 3 4 ALA n 3 5 ALA n 3 6 ALA n 3 7 ALA n 3 8 ALA n 3 9 MET n 4 1 GLN n 4 2 LEU n 4 3 SER n 4 4 PRO n 4 5 PHE n 4 6 PRO n 4 7 PHE n 4 8 ASP n 4 9 LEU n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? 'house mouse' Mus H-2LD ? ? ? ? ? ? 'Mus musculus' 10090 ? ? ? ? ? 'MOST NUCLEATED CELLS' 'CYTOPLASM, ER, CELL SURFACE' 'fruit fly' 'Drosophila melanogaster' 7227 Drosophila ? ? ? ? ? ? ? ? ? ? ? ? SECRETED ? ? ? ? ? ? ? 2 1 sample ? ? ? 'house mouse' Mus H-2LD ? ? ? ? ? ? 'Mus musculus' 10090 ? ? ? ? ? 'MOST NUCLEATED CELLS' 'CYTOPLASM, ER, CELL SURFACE' 'fruit fly' 'Drosophila melanogaster' 7227 Drosophila ? ? ? ? ? ? ? ? ? ? ? ? SECRETED ? ? ? ? ? ? ? # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 3 1 sample ? ? 'fruit fly' 'Drosophila melanogaster' 7227 Drosophila ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ;CHAIN P PEPTIDE IS THE NATURAL PRODUCT OF THE EXPRESSION SYSTEM. IT IS ACTUALLY A MODEL REPRESENTING THE ELECTRON DENSITY OF A MIXTURE OF BOUND PEPTIDES AVAILABLE IN THE PROTEIN EXPRESSION MEDIA. ; 4 1 sample ? ? 'fruit fly' 'Drosophila melanogaster' 7227 Drosophila ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ;CHAIN P PEPTIDE IS THE NATURAL PRODUCT OF THE EXPRESSION SYSTEM. IT IS ACTUALLY A MODEL REPRESENTING THE ELECTRON DENSITY OF A MIXTURE OF BOUND PEPTIDES AVAILABLE IN THE PROTEIN EXPRESSION MEDIA. ; # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 UNP HA1L_MOUSE 1 P01897 1 ;MGAMAPRTLLLLLAAALAPTQTRAGPHSMRYFETAVSRPGLGEPRYISVGYVDNKEFVRFDSDAENPRYEPQAPWMEQEG PEYWERITQIAKGQEQWFRVNLRTLLGYYNQSAGGTHTLQWMYGCDVGSDGRLLRGYEQFAYDGCDYIALNEDLKTWTAA DMAAQITRRKWEQAGAAEYYRAYLEGECVEWLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWALGFYPADITLT WQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCRVYHEGLPEPLTLRWEPPPSTDSYMVIVAVLGVLGAM AIIGAVVAFVMKRRRNTGGKGGDYALAPGSQSSEMSLRDCKA ; ? 2 UNP B2MG_MOUSE 2 P01887 1 ;MARSVTLVFLVLVSLTGLYAIQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDW SFYILAHTEFTPTETDTYACRVKHDSMAEPKTVYWDRDM ; ? 3 PDB 1LDP 3 1LDP ? ? ? 4 PDB 1LDP 4 1LDP ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1LDP H 1 ? 272 ? P01897 25 ? 296 ? 1 272 2 2 1LDP L 1 ? 99 ? P01887 21 ? 119 ? 1 99 3 3 1LDP P 1 ? 9 ? 1LDP 1 ? 9 ? 1 9 4 4 1LDP Q 1 ? 9 ? 1LDP 1 ? 9 ? 1 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 NDG 'D-saccharide, alpha linking' . 2-acetamido-2-deoxy-alpha-D-glucopyranose ;N-acetyl-alpha-D-glucosamine; 2-acetamido-2-deoxy-alpha-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1LDP _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 3 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.18 _exptl_crystal.density_percent_sol 61. _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'PROTEIN WAS CRYSTALLIZED FROM 100MM SODIUM CACODYLATE, 0.2M AMMONIUM SULFATE, 0.5M SODIUM BROMIDE, 30% PEG 8000, PH 6.5.' # _diffrn.id 1 _diffrn.ambient_temp 298 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type SIEMENS _diffrn_detector.pdbx_collection_date 1996-01 _diffrn_detector.details 'DOUBLE-MIRROR FOCUSING CAMERAS' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'NI FILTER' _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'ELLIOTT GX-18' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1LDP _reflns.observed_criterion_sigma_I 0. _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 15. _reflns.d_resolution_high 2.8 _reflns.number_obs 11809 _reflns.number_all ? _reflns.percent_possible_obs 81. _reflns.pdbx_Rmerge_I_obs 0.113 _reflns.pdbx_Rsym_value 0.113 _reflns.pdbx_netI_over_sigmaI 5.6 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 2.2 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.8 _reflns_shell.d_res_low 2.9 _reflns_shell.percent_possible_all 63.6 _reflns_shell.Rmerge_I_obs 0.358 _reflns_shell.pdbx_Rsym_value 0.358 _reflns_shell.meanI_over_sigI_obs 1.8 _reflns_shell.pdbx_redundancy 1.4 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1LDP _refine.ls_number_reflns_obs 7935 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1. _refine.pdbx_data_cutoff_high_absF 100000. _refine.pdbx_data_cutoff_low_absF 0.1 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 6.0 _refine.ls_d_res_high 3.1 _refine.ls_percent_reflns_obs 85. _refine.ls_R_factor_obs 0.221 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.221 _refine.ls_R_factor_R_free 0.371 _refine.ls_R_factor_R_free_error 0.016 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 6. _refine.ls_number_reflns_R_free 556 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 28. _refine.aniso_B[1][1] -4.192 _refine.aniso_B[2][2] 2.918 _refine.aniso_B[3][3] 1.274 _refine.aniso_B[1][2] 0. _refine.aniso_B[1][3] -6.204 _refine.aniso_B[2][3] 0. _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'SOME LIBRARIES WERE MODIFIED IN-HOUSE TO PROVIDE MISSING CARBOHYDRATE AND PROTEIN SPECIFICATIONS. X-PLOR 3.1 ALSO WAS USED.' _refine.pdbx_starting_model 'PDB ENTRY 1HOC' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model 'ONE B-VALUE PER RESIDUE' _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1LDP _refine_analyze.Luzzati_coordinate_error_obs 0.35 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs 6.0 _refine_analyze.Luzzati_coordinate_error_free 0.60 _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3087 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 42 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 3129 _refine_hist.d_res_high 3.1 _refine_hist.d_res_low 6.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.015 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.8 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 25.8 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 1.8 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 8 _refine_ls_shell.d_res_high 3.1 _refine_ls_shell.d_res_low 3.22 _refine_ls_shell.number_reflns_R_work 783 _refine_ls_shell.R_factor_R_work 0.291 _refine_ls_shell.percent_reflns_obs 72. _refine_ls_shell.R_factor_R_free 0.477 _refine_ls_shell.R_factor_R_free_error 0.062 _refine_ls_shell.percent_reflns_R_free 10.6 _refine_ls_shell.number_reflns_R_free 59 _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PARHCSDX.PRO TOPHCSDX.PRO 'X-RAY DIFFRACTION' 2 PARAM3_MOD.CHO TOPH3.CHO 'X-RAY DIFFRACTION' 3 ? TOPH19SYED.PEP 'X-RAY DIFFRACTION' # _struct.entry_id 1LDP _struct.title 'CRYSTAL STRUCTURE OF MURINE MHC CLASS I H-2LD WITH A MIXTURE OF BOUND PEPTIDES' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1LDP _struct_keywords.pdbx_keywords 'COMPLEX (MHC I/PEPTIDE)' _struct_keywords.text ;COMPLEX (MHC I-PEPTIDE), MAJOR HISTOCOMPATIBILITY COMPLEX, IMMUNOLOGY, CELLULAR IMMUNITY, PEPTIDE ANTIGEN, CELL SURFACE RECEPTOR, ANTIGEN RECEPTOR, ANTIGEN PRESENTATION, COMPLEX (MHC I-PEPTIDE) complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 57 ? TYR A 84 ? PRO H 57 TYR H 84 1 ? 28 HELX_P HELX_P2 2 MET A 138 ? ALA A 150 ? MET H 138 ALA H 150 1 ? 13 HELX_P HELX_P3 3 ALA A 152 ? GLU A 161 ? ALA H 152 GLU H 161 1 ? 10 HELX_P HELX_P4 4 GLU A 163 ? ASN A 174 ? GLU H 163 ASN H 174 1 ? 12 HELX_P HELX_P5 5 ASN A 176 ? LEU A 179 ? ASN H 176 LEU H 179 1 ? 4 HELX_P HELX_P6 6 GLU A 254 ? ASN A 256 ? GLU H 254 ASN H 256 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 101 SG ? ? ? 1_555 A CYS 164 SG ? ? H CYS 101 H CYS 164 1_555 ? ? ? ? ? ? ? 2.002 ? ? disulf2 disulf ? ? A CYS 203 SG ? ? ? 1_555 A CYS 259 SG ? ? H CYS 203 H CYS 259 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf3 disulf ? ? B CYS 25 SG ? ? ? 1_555 B CYS 80 SG ? ? L CYS 25 L CYS 80 1_555 ? ? ? ? ? ? ? 2.011 ? ? covale1 covale one ? A ASN 86 ND2 ? ? ? 1_555 F NAG . C1 ? ? H ASN 86 H NAG 273 1_555 ? ? ? ? ? ? ? 1.495 ? N-Glycosylation covale2 covale one ? A ASN 176 ND2 ? ? ? 1_555 E NAG . C1 ? ? H ASN 176 A NAG 1 1_555 ? ? ? ? ? ? ? 1.450 ? N-Glycosylation covale3 covale both ? E NAG . O4 ? ? ? 1_555 E NDG . C1 ? ? A NAG 1 A NDG 2 1_555 ? ? ? ? ? ? ? 1.438 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 TYR 209 A . ? TYR 209 H PRO 210 A ? PRO 210 H 1 0.38 2 HIS 31 B . ? HIS 31 L PRO 32 B ? PRO 32 L 1 -1.91 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 2 ? C ? 2 ? D ? 2 ? E ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 31 ? ARG A 35 ? LYS H 31 ARG H 35 A 2 VAL A 25 ? VAL A 28 ? VAL H 25 VAL H 28 A 3 HIS A 3 ? VAL A 12 ? HIS H 3 VAL H 12 A 4 THR A 94 ? VAL A 103 ? THR H 94 VAL H 103 A 5 LEU A 109 ? TYR A 118 ? LEU H 109 TYR H 118 A 6 ASP A 122 ? ALA A 125 ? ASP H 122 ALA H 125 B 1 ILE A 213 ? GLN A 218 ? ILE H 213 GLN H 218 B 2 THR A 258 ? HIS A 263 ? THR H 258 HIS H 263 C 1 GLU A 198 ? PHE A 208 ? GLU H 198 PHE H 208 C 2 PHE A 241 ? PRO A 250 ? PHE H 241 PRO H 250 D 1 LEU B 23 ? TYR B 26 ? LEU L 23 TYR L 26 D 2 LEU B 65 ? THR B 68 ? LEU L 65 THR L 68 E 1 ILE B 35 ? LYS B 41 ? ILE L 35 LYS L 41 E 2 TYR B 78 ? HIS B 84 ? TYR L 78 HIS L 84 E 3 LYS B 91 ? TYR B 94 ? LYS L 91 TYR L 94 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LYS A 31 ? O LYS H 31 N VAL A 28 ? N VAL H 28 A 2 3 O TYR A 27 ? O TYR H 27 N ARG A 6 ? N ARG H 6 A 3 4 O HIS A 3 ? O HIS H 3 N VAL A 103 ? N VAL H 103 A 4 5 O GLN A 96 ? O GLN H 96 N ALA A 117 ? N ALA H 117 A 5 6 O PHE A 116 ? O PHE H 116 N ILE A 124 ? N ILE H 124 B 1 2 O THR A 214 ? O THR H 214 N TYR A 262 ? N TYR H 262 C 1 2 O VAL A 199 ? O VAL H 199 N VAL A 249 ? N VAL H 249 D 1 2 O LEU B 23 ? O LEU L 23 N THR B 68 ? N THR L 68 E 1 2 O GLU B 36 ? O GLU L 36 N LYS B 83 ? N LYS L 83 E 2 3 O CYS B 80 ? O CYS L 80 N VAL B 93 ? N VAL L 93 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details CNP Unknown ? ? ? ? 1 ;THIS NINE AMINO ACID MODEL BEST FITS THE ELECTRON DENSITY REPRESENTING A MIXTURE OF PEPTIDES BOUND IN THE H-2LD PEPTIDE-BINDING GROOVE. IT WAS USED THROUGHOUT H-2LD REFINEMENT. ; CNQ Unknown ? ? ? ? 1 ;THIS NINE RESIDUE MODEL OF ANTIGENIC PEPTIDE QL9 ALSO FITS WELL TO THE ELECTRON DENSITY OF THE H-2LD BOUND PEPTIDE MIXTURE. THESE COORDINATES HAVE BEEN REFINED IN X-PLOR TOGETHER WITH THE FINAL MODELS OF THE H AND L CHAINS. ; # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 CNP 1 ALA C 1 ? ALA P 1 . ? 1_555 ? 2 CNQ 1 GLN D 1 ? GLN Q 1 . ? 1_555 ? # _database_PDB_matrix.entry_id 1LDP _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1LDP _atom_sites.fract_transf_matrix[1][1] 0.013812 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001929 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020416 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012012 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _database_PDB_caveat.id _database_PDB_caveat.text 1 'NAG A 1 HAS WRONG CHIRALITY AT ATOM C1' 2 'NAG H 273 HAS WRONG CHIRALITY AT ATOM C1' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY H . n A 1 2 PRO 2 2 2 PRO PRO H . n A 1 3 HIS 3 3 3 HIS HIS H . n A 1 4 SER 4 4 4 SER SER H . n A 1 5 MET 5 5 5 MET MET H . n A 1 6 ARG 6 6 6 ARG ARG H . n A 1 7 TYR 7 7 7 TYR TYR H . n A 1 8 PHE 8 8 8 PHE PHE H . n A 1 9 GLU 9 9 9 GLU GLU H . n A 1 10 THR 10 10 10 THR THR H . n A 1 11 ALA 11 11 11 ALA ALA H . n A 1 12 VAL 12 12 12 VAL VAL H . n A 1 13 SER 13 13 13 SER SER H . n A 1 14 ARG 14 14 14 ARG ARG H . n A 1 15 PRO 15 15 15 PRO PRO H . n A 1 16 GLY 16 16 16 GLY GLY H . n A 1 17 LEU 17 17 17 LEU LEU H . n A 1 18 GLY 18 18 18 GLY GLY H . n A 1 19 GLU 19 19 19 GLU GLU H . n A 1 20 PRO 20 20 20 PRO PRO H . n A 1 21 ARG 21 21 21 ARG ARG H . n A 1 22 TYR 22 22 22 TYR TYR H . n A 1 23 ILE 23 23 23 ILE ILE H . n A 1 24 SER 24 24 24 SER SER H . n A 1 25 VAL 25 25 25 VAL VAL H . n A 1 26 GLY 26 26 26 GLY GLY H . n A 1 27 TYR 27 27 27 TYR TYR H . n A 1 28 VAL 28 28 28 VAL VAL H . n A 1 29 ASP 29 29 29 ASP ASP H . n A 1 30 ASN 30 30 30 ASN ASN H . n A 1 31 LYS 31 31 31 LYS LYS H . n A 1 32 GLU 32 32 32 GLU GLU H . n A 1 33 PHE 33 33 33 PHE PHE H . n A 1 34 VAL 34 34 34 VAL VAL H . n A 1 35 ARG 35 35 35 ARG ARG H . n A 1 36 PHE 36 36 36 PHE PHE H . n A 1 37 ASP 37 37 37 ASP ASP H . n A 1 38 SER 38 38 38 SER SER H . n A 1 39 ASP 39 39 39 ASP ASP H . n A 1 40 ALA 40 40 40 ALA ALA H . n A 1 41 GLU 41 41 41 GLU GLU H . n A 1 42 ASN 42 42 42 ASN ASN H . n A 1 43 PRO 43 43 43 PRO PRO H . n A 1 44 ARG 44 44 44 ARG ARG H . n A 1 45 TYR 45 45 45 TYR TYR H . n A 1 46 GLU 46 46 46 GLU GLU H . n A 1 47 PRO 47 47 47 PRO PRO H . n A 1 48 GLN 48 48 48 GLN GLN H . n A 1 49 ALA 49 49 49 ALA ALA H . n A 1 50 PRO 50 50 50 PRO PRO H . n A 1 51 TRP 51 51 51 TRP TRP H . n A 1 52 MET 52 52 52 MET MET H . n A 1 53 GLU 53 53 53 GLU GLU H . n A 1 54 GLN 54 54 54 GLN GLN H . n A 1 55 GLU 55 55 55 GLU GLU H . n A 1 56 GLY 56 56 56 GLY GLY H . n A 1 57 PRO 57 57 57 PRO PRO H . n A 1 58 GLU 58 58 58 GLU GLU H . n A 1 59 TYR 59 59 59 TYR TYR H . n A 1 60 TRP 60 60 60 TRP TRP H . n A 1 61 GLU 61 61 61 GLU GLU H . n A 1 62 ARG 62 62 62 ARG ARG H . n A 1 63 ILE 63 63 63 ILE ILE H . n A 1 64 THR 64 64 64 THR THR H . n A 1 65 GLN 65 65 65 GLN GLN H . n A 1 66 ILE 66 66 66 ILE ILE H . n A 1 67 ALA 67 67 67 ALA ALA H . n A 1 68 LYS 68 68 68 LYS LYS H . n A 1 69 GLY 69 69 69 GLY GLY H . n A 1 70 GLN 70 70 70 GLN GLN H . n A 1 71 GLU 71 71 71 GLU GLU H . n A 1 72 GLN 72 72 72 GLN GLN H . n A 1 73 TRP 73 73 73 TRP TRP H . n A 1 74 PHE 74 74 74 PHE PHE H . n A 1 75 ARG 75 75 75 ARG ARG H . n A 1 76 VAL 76 76 76 VAL VAL H . n A 1 77 ASN 77 77 77 ASN ASN H . n A 1 78 LEU 78 78 78 LEU LEU H . n A 1 79 ARG 79 79 79 ARG ARG H . n A 1 80 THR 80 80 80 THR THR H . n A 1 81 LEU 81 81 81 LEU LEU H . n A 1 82 LEU 82 82 82 LEU LEU H . n A 1 83 GLY 83 83 83 GLY GLY H . n A 1 84 TYR 84 84 84 TYR TYR H . n A 1 85 TYR 85 85 85 TYR TYR H . n A 1 86 ASN 86 86 86 ASN ASN H . n A 1 87 GLN 87 87 87 GLN GLN H . n A 1 88 SER 88 88 88 SER SER H . n A 1 89 ALA 89 89 89 ALA ALA H . n A 1 90 GLY 90 90 90 GLY GLY H . n A 1 91 GLY 91 91 91 GLY GLY H . n A 1 92 THR 92 92 92 THR THR H . n A 1 93 HIS 93 93 93 HIS HIS H . n A 1 94 THR 94 94 94 THR THR H . n A 1 95 LEU 95 95 95 LEU LEU H . n A 1 96 GLN 96 96 96 GLN GLN H . n A 1 97 TRP 97 97 97 TRP TRP H . n A 1 98 MET 98 98 98 MET MET H . n A 1 99 TYR 99 99 99 TYR TYR H . n A 1 100 GLY 100 100 100 GLY GLY H . n A 1 101 CYS 101 101 101 CYS CYS H . n A 1 102 ASP 102 102 102 ASP ASP H . n A 1 103 VAL 103 103 103 VAL VAL H . n A 1 104 GLY 104 104 104 GLY GLY H . n A 1 105 SER 105 105 105 SER SER H . n A 1 106 ASP 106 106 106 ASP ASP H . n A 1 107 GLY 107 107 107 GLY GLY H . n A 1 108 ARG 108 108 108 ARG ARG H . n A 1 109 LEU 109 109 109 LEU LEU H . n A 1 110 LEU 110 110 110 LEU LEU H . n A 1 111 ARG 111 111 111 ARG ARG H . n A 1 112 GLY 112 112 112 GLY GLY H . n A 1 113 TYR 113 113 113 TYR TYR H . n A 1 114 GLU 114 114 114 GLU GLU H . n A 1 115 GLN 115 115 115 GLN GLN H . n A 1 116 PHE 116 116 116 PHE PHE H . n A 1 117 ALA 117 117 117 ALA ALA H . n A 1 118 TYR 118 118 118 TYR TYR H . n A 1 119 ASP 119 119 119 ASP ASP H . n A 1 120 GLY 120 120 120 GLY GLY H . n A 1 121 CYS 121 121 121 CYS CYS H . n A 1 122 ASP 122 122 122 ASP ASP H . n A 1 123 TYR 123 123 123 TYR TYR H . n A 1 124 ILE 124 124 124 ILE ILE H . n A 1 125 ALA 125 125 125 ALA ALA H . n A 1 126 LEU 126 126 126 LEU LEU H . n A 1 127 ASN 127 127 127 ASN ASN H . n A 1 128 GLU 128 128 128 GLU GLU H . n A 1 129 ASP 129 129 129 ASP ASP H . n A 1 130 LEU 130 130 130 LEU LEU H . n A 1 131 LYS 131 131 131 LYS LYS H . n A 1 132 THR 132 132 132 THR THR H . n A 1 133 TRP 133 133 133 TRP TRP H . n A 1 134 THR 134 134 134 THR THR H . n A 1 135 ALA 135 135 135 ALA ALA H . n A 1 136 ALA 136 136 136 ALA ALA H . n A 1 137 ASP 137 137 137 ASP ASP H . n A 1 138 MET 138 138 138 MET MET H . n A 1 139 ALA 139 139 139 ALA ALA H . n A 1 140 ALA 140 140 140 ALA ALA H . n A 1 141 GLN 141 141 141 GLN GLN H . n A 1 142 ILE 142 142 142 ILE ILE H . n A 1 143 THR 143 143 143 THR THR H . n A 1 144 ARG 144 144 144 ARG ARG H . n A 1 145 ARG 145 145 145 ARG ARG H . n A 1 146 LYS 146 146 146 LYS LYS H . n A 1 147 TRP 147 147 147 TRP TRP H . n A 1 148 GLU 148 148 148 GLU GLU H . n A 1 149 GLN 149 149 149 GLN GLN H . n A 1 150 ALA 150 150 150 ALA ALA H . n A 1 151 GLY 151 151 151 GLY GLY H . n A 1 152 ALA 152 152 152 ALA ALA H . n A 1 153 ALA 153 153 153 ALA ALA H . n A 1 154 GLU 154 154 154 GLU GLU H . n A 1 155 TYR 155 155 155 TYR TYR H . n A 1 156 TYR 156 156 156 TYR TYR H . n A 1 157 ARG 157 157 157 ARG ARG H . n A 1 158 ALA 158 158 158 ALA ALA H . n A 1 159 TYR 159 159 159 TYR TYR H . n A 1 160 LEU 160 160 160 LEU LEU H . n A 1 161 GLU 161 161 161 GLU GLU H . n A 1 162 GLY 162 162 162 GLY GLY H . n A 1 163 GLU 163 163 163 GLU GLU H . n A 1 164 CYS 164 164 164 CYS CYS H . n A 1 165 VAL 165 165 165 VAL VAL H . n A 1 166 GLU 166 166 166 GLU GLU H . n A 1 167 TRP 167 167 167 TRP TRP H . n A 1 168 LEU 168 168 168 LEU LEU H . n A 1 169 HIS 169 169 169 HIS HIS H . n A 1 170 ARG 170 170 170 ARG ARG H . n A 1 171 TYR 171 171 171 TYR TYR H . n A 1 172 LEU 172 172 172 LEU LEU H . n A 1 173 LYS 173 173 173 LYS LYS H . n A 1 174 ASN 174 174 174 ASN ASN H . n A 1 175 GLY 175 175 175 GLY GLY H . n A 1 176 ASN 176 176 176 ASN ASN H . n A 1 177 ALA 177 177 177 ALA ALA H . n A 1 178 THR 178 178 178 THR THR H . n A 1 179 LEU 179 179 179 LEU LEU H . n A 1 180 LEU 180 180 180 LEU LEU H . n A 1 181 ARG 181 181 181 ARG ARG H . n A 1 182 THR 182 182 182 THR THR H . n A 1 183 ASP 183 183 183 ASP ASP H . n A 1 184 SER 184 184 184 SER SER H . n A 1 185 PRO 185 185 185 PRO PRO H . n A 1 186 LYS 186 186 186 LYS LYS H . n A 1 187 ALA 187 187 187 ALA ALA H . n A 1 188 HIS 188 188 188 HIS HIS H . n A 1 189 VAL 189 189 189 VAL VAL H . n A 1 190 THR 190 190 190 THR THR H . n A 1 191 HIS 191 191 191 HIS HIS H . n A 1 192 HIS 192 192 192 HIS HIS H . n A 1 193 PRO 193 193 193 PRO PRO H . n A 1 194 ARG 194 194 194 ARG ARG H . n A 1 195 SER 195 195 195 SER SER H . n A 1 196 LYS 196 196 196 LYS LYS H . n A 1 197 GLY 197 197 197 GLY GLY H . n A 1 198 GLU 198 198 198 GLU GLU H . n A 1 199 VAL 199 199 199 VAL VAL H . n A 1 200 THR 200 200 200 THR THR H . n A 1 201 LEU 201 201 201 LEU LEU H . n A 1 202 ARG 202 202 202 ARG ARG H . n A 1 203 CYS 203 203 203 CYS CYS H . n A 1 204 TRP 204 204 204 TRP TRP H . n A 1 205 ALA 205 205 205 ALA ALA H . n A 1 206 LEU 206 206 206 LEU LEU H . n A 1 207 GLY 207 207 207 GLY GLY H . n A 1 208 PHE 208 208 208 PHE PHE H . n A 1 209 TYR 209 209 209 TYR TYR H . n A 1 210 PRO 210 210 210 PRO PRO H . n A 1 211 ALA 211 211 211 ALA ALA H . n A 1 212 ASP 212 212 212 ASP ASP H . n A 1 213 ILE 213 213 213 ILE ILE H . n A 1 214 THR 214 214 214 THR THR H . n A 1 215 LEU 215 215 215 LEU LEU H . n A 1 216 THR 216 216 216 THR THR H . n A 1 217 TRP 217 217 217 TRP TRP H . n A 1 218 GLN 218 218 218 GLN GLN H . n A 1 219 LEU 219 219 219 LEU LEU H . n A 1 220 ASN 220 220 220 ASN ASN H . n A 1 221 GLY 221 221 221 GLY GLY H . n A 1 222 GLU 222 222 222 GLU GLU H . n A 1 223 GLU 223 223 223 GLU GLU H . n A 1 224 LEU 224 224 224 LEU LEU H . n A 1 225 THR 225 225 225 THR THR H . n A 1 226 GLN 226 226 226 GLN GLN H . n A 1 227 ASP 227 227 227 ASP ASP H . n A 1 228 MET 228 228 228 MET MET H . n A 1 229 GLU 229 229 229 GLU GLU H . n A 1 230 LEU 230 230 230 LEU LEU H . n A 1 231 VAL 231 231 231 VAL VAL H . n A 1 232 GLU 232 232 232 GLU GLU H . n A 1 233 THR 233 233 233 THR THR H . n A 1 234 ARG 234 234 234 ARG ARG H . n A 1 235 PRO 235 235 235 PRO PRO H . n A 1 236 ALA 236 236 236 ALA ALA H . n A 1 237 GLY 237 237 237 GLY GLY H . n A 1 238 ASP 238 238 238 ASP ASP H . n A 1 239 GLY 239 239 239 GLY GLY H . n A 1 240 THR 240 240 240 THR THR H . n A 1 241 PHE 241 241 241 PHE PHE H . n A 1 242 GLN 242 242 242 GLN GLN H . n A 1 243 LYS 243 243 243 LYS LYS H . n A 1 244 TRP 244 244 244 TRP TRP H . n A 1 245 ALA 245 245 245 ALA ALA H . n A 1 246 SER 246 246 246 SER SER H . n A 1 247 VAL 247 247 247 VAL VAL H . n A 1 248 VAL 248 248 248 VAL VAL H . n A 1 249 VAL 249 249 249 VAL VAL H . n A 1 250 PRO 250 250 250 PRO PRO H . n A 1 251 LEU 251 251 251 LEU LEU H . n A 1 252 GLY 252 252 252 GLY GLY H . n A 1 253 LYS 253 253 253 LYS LYS H . n A 1 254 GLU 254 254 254 GLU GLU H . n A 1 255 GLN 255 255 255 GLN GLN H . n A 1 256 ASN 256 256 256 ASN ASN H . n A 1 257 TYR 257 257 257 TYR TYR H . n A 1 258 THR 258 258 258 THR THR H . n A 1 259 CYS 259 259 259 CYS CYS H . n A 1 260 ARG 260 260 260 ARG ARG H . n A 1 261 VAL 261 261 261 VAL VAL H . n A 1 262 TYR 262 262 262 TYR TYR H . n A 1 263 HIS 263 263 263 HIS HIS H . n A 1 264 GLU 264 264 264 GLU GLU H . n A 1 265 GLY 265 265 265 GLY GLY H . n A 1 266 LEU 266 266 266 LEU LEU H . n A 1 267 PRO 267 267 267 PRO PRO H . n A 1 268 GLU 268 268 268 GLU GLU H . n A 1 269 PRO 269 269 269 PRO PRO H . n A 1 270 LEU 270 270 270 LEU LEU H . n A 1 271 THR 271 271 271 THR THR H . n A 1 272 LEU 272 272 272 LEU LEU H . n B 2 1 ILE 1 1 1 ILE ILE L . n B 2 2 GLN 2 2 2 GLN GLN L . n B 2 3 LYS 3 3 3 LYS LYS L . n B 2 4 THR 4 4 4 THR THR L . n B 2 5 PRO 5 5 5 PRO PRO L . n B 2 6 GLN 6 6 6 GLN GLN L . n B 2 7 ILE 7 7 7 ILE ILE L . n B 2 8 GLN 8 8 8 GLN GLN L . n B 2 9 VAL 9 9 9 VAL VAL L . n B 2 10 TYR 10 10 10 TYR TYR L . n B 2 11 SER 11 11 11 SER SER L . n B 2 12 ARG 12 12 12 ARG ARG L . n B 2 13 HIS 13 13 13 HIS HIS L . n B 2 14 PRO 14 14 14 PRO PRO L . n B 2 15 PRO 15 15 15 PRO PRO L . n B 2 16 GLU 16 16 16 GLU GLU L . n B 2 17 ASN 17 17 17 ASN ASN L . n B 2 18 GLY 18 18 18 GLY GLY L . n B 2 19 LYS 19 19 19 LYS LYS L . n B 2 20 PRO 20 20 20 PRO PRO L . n B 2 21 ASN 21 21 21 ASN ASN L . n B 2 22 ILE 22 22 22 ILE ILE L . n B 2 23 LEU 23 23 23 LEU LEU L . n B 2 24 ASN 24 24 24 ASN ASN L . n B 2 25 CYS 25 25 25 CYS CYS L . n B 2 26 TYR 26 26 26 TYR TYR L . n B 2 27 VAL 27 27 27 VAL VAL L . n B 2 28 THR 28 28 28 THR THR L . n B 2 29 GLN 29 29 29 GLN GLN L . n B 2 30 PHE 30 30 30 PHE PHE L . n B 2 31 HIS 31 31 31 HIS HIS L . n B 2 32 PRO 32 32 32 PRO PRO L . n B 2 33 PRO 33 33 33 PRO PRO L . n B 2 34 HIS 34 34 34 HIS HIS L . n B 2 35 ILE 35 35 35 ILE ILE L . n B 2 36 GLU 36 36 36 GLU GLU L . n B 2 37 ILE 37 37 37 ILE ILE L . n B 2 38 GLN 38 38 38 GLN GLN L . n B 2 39 MET 39 39 39 MET MET L . n B 2 40 LEU 40 40 40 LEU LEU L . n B 2 41 LYS 41 41 41 LYS LYS L . n B 2 42 ASN 42 42 42 ASN ASN L . n B 2 43 GLY 43 43 43 GLY GLY L . n B 2 44 LYS 44 44 44 LYS LYS L . n B 2 45 LYS 45 45 45 LYS LYS L . n B 2 46 ILE 46 46 46 ILE ILE L . n B 2 47 PRO 47 47 47 PRO PRO L . n B 2 48 LYS 48 48 48 LYS LYS L . n B 2 49 VAL 49 49 49 VAL VAL L . n B 2 50 GLU 50 50 50 GLU GLU L . n B 2 51 MET 51 51 51 MET MET L . n B 2 52 SER 52 52 52 SER SER L . n B 2 53 ASP 53 53 53 ASP ASP L . n B 2 54 MET 54 54 54 MET MET L . n B 2 55 SER 55 55 55 SER SER L . n B 2 56 PHE 56 56 56 PHE PHE L . n B 2 57 SER 57 57 57 SER SER L . n B 2 58 LYS 58 58 58 LYS LYS L . n B 2 59 ASP 59 59 59 ASP ASP L . n B 2 60 TRP 60 60 60 TRP TRP L . n B 2 61 SER 61 61 61 SER SER L . n B 2 62 PHE 62 62 62 PHE PHE L . n B 2 63 TYR 63 63 63 TYR TYR L . n B 2 64 ILE 64 64 64 ILE ILE L . n B 2 65 LEU 65 65 65 LEU LEU L . n B 2 66 ALA 66 66 66 ALA ALA L . n B 2 67 HIS 67 67 67 HIS HIS L . n B 2 68 THR 68 68 68 THR THR L . n B 2 69 GLU 69 69 69 GLU GLU L . n B 2 70 PHE 70 70 70 PHE PHE L . n B 2 71 THR 71 71 71 THR THR L . n B 2 72 PRO 72 72 72 PRO PRO L . n B 2 73 THR 73 73 73 THR THR L . n B 2 74 GLU 74 74 74 GLU GLU L . n B 2 75 THR 75 75 75 THR THR L . n B 2 76 ASP 76 76 76 ASP ASP L . n B 2 77 THR 77 77 77 THR THR L . n B 2 78 TYR 78 78 78 TYR TYR L . n B 2 79 ALA 79 79 79 ALA ALA L . n B 2 80 CYS 80 80 80 CYS CYS L . n B 2 81 ARG 81 81 81 ARG ARG L . n B 2 82 VAL 82 82 82 VAL VAL L . n B 2 83 LYS 83 83 83 LYS LYS L . n B 2 84 HIS 84 84 84 HIS HIS L . n B 2 85 ASP 85 85 85 ASP ASP L . n B 2 86 SER 86 86 86 SER SER L . n B 2 87 MET 87 87 87 MET MET L . n B 2 88 ALA 88 88 88 ALA ALA L . n B 2 89 GLU 89 89 89 GLU GLU L . n B 2 90 PRO 90 90 90 PRO PRO L . n B 2 91 LYS 91 91 91 LYS LYS L . n B 2 92 THR 92 92 92 THR THR L . n B 2 93 VAL 93 93 93 VAL VAL L . n B 2 94 TYR 94 94 94 TYR TYR L . n B 2 95 TRP 95 95 95 TRP TRP L . n B 2 96 ASP 96 96 96 ASP ASP L . n B 2 97 ARG 97 97 97 ARG ARG L . n B 2 98 ASP 98 98 98 ASP ASP L . n B 2 99 MET 99 99 99 MET MET L . n C 3 1 ALA 1 1 1 ALA ALA P . n C 3 2 PRO 2 2 2 PRO PRO P . n C 3 3 ALA 3 3 3 ALA ALA P . n C 3 4 ALA 4 4 4 ALA ALA P . n C 3 5 ALA 5 5 5 ALA ALA P . n C 3 6 ALA 6 6 6 ALA ALA P . n C 3 7 ALA 7 7 7 ALA ALA P . n C 3 8 ALA 8 8 8 ALA ALA P . n C 3 9 MET 9 9 9 MET MET P . n D 4 1 GLN 1 1 1 GLN GLN Q . n D 4 2 LEU 2 2 2 LEU LEU Q . n D 4 3 SER 3 3 3 SER SER Q . n D 4 4 PRO 4 4 4 PRO PRO Q . n D 4 5 PHE 5 5 5 PHE PHE Q . n D 4 6 PRO 6 6 6 PRO PRO Q . n D 4 7 PHE 7 7 7 PHE PHE Q . n D 4 8 ASP 8 8 8 ASP ASP Q . n D 4 9 LEU 9 9 9 LEU LEU Q . n # _pdbx_nonpoly_scheme.asym_id F _pdbx_nonpoly_scheme.entity_id 6 _pdbx_nonpoly_scheme.mon_id NAG _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 273 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id NAG _pdbx_nonpoly_scheme.auth_mon_id NAG _pdbx_nonpoly_scheme.pdb_strand_id H _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 86 H ASN 86 ? ASN 'GLYCOSYLATION SITE' 2 A ASN 176 H ASN 176 ? ASN 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-06-17 2 'Structure model' 1 1 2008-03-03 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2020-07-29 5 'Structure model' 2 1 2023-08-09 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Atomic model' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Non-polymer description' 8 4 'Structure model' 'Structure summary' 9 5 'Structure model' 'Database references' 10 5 'Structure model' 'Refinement description' 11 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp 3 4 'Structure model' database_PDB_caveat 4 4 'Structure model' entity 5 4 'Structure model' pdbx_branch_scheme 6 4 'Structure model' pdbx_chem_comp_identifier 7 4 'Structure model' pdbx_entity_branch 8 4 'Structure model' pdbx_entity_branch_descriptor 9 4 'Structure model' pdbx_entity_branch_link 10 4 'Structure model' pdbx_entity_branch_list 11 4 'Structure model' pdbx_entity_nonpoly 12 4 'Structure model' pdbx_nonpoly_scheme 13 4 'Structure model' pdbx_struct_assembly_gen 14 4 'Structure model' pdbx_validate_chiral 15 4 'Structure model' struct_asym 16 4 'Structure model' struct_conn 17 4 'Structure model' struct_site 18 4 'Structure model' struct_site_gen 19 5 'Structure model' chem_comp 20 5 'Structure model' database_2 21 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.B_iso_or_equiv' 2 4 'Structure model' '_atom_site.Cartn_x' 3 4 'Structure model' '_atom_site.Cartn_y' 4 4 'Structure model' '_atom_site.Cartn_z' 5 4 'Structure model' '_atom_site.auth_asym_id' 6 4 'Structure model' '_atom_site.auth_atom_id' 7 4 'Structure model' '_atom_site.auth_comp_id' 8 4 'Structure model' '_atom_site.auth_seq_id' 9 4 'Structure model' '_atom_site.label_asym_id' 10 4 'Structure model' '_atom_site.label_atom_id' 11 4 'Structure model' '_atom_site.label_comp_id' 12 4 'Structure model' '_atom_site.label_entity_id' 13 4 'Structure model' '_atom_site.type_symbol' 14 4 'Structure model' '_chem_comp.formula' 15 4 'Structure model' '_chem_comp.formula_weight' 16 4 'Structure model' '_chem_comp.id' 17 4 'Structure model' '_chem_comp.mon_nstd_flag' 18 4 'Structure model' '_chem_comp.name' 19 4 'Structure model' '_chem_comp.type' 20 4 'Structure model' '_pdbx_entity_nonpoly.comp_id' 21 4 'Structure model' '_pdbx_entity_nonpoly.entity_id' 22 4 'Structure model' '_pdbx_entity_nonpoly.name' 23 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 24 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 25 4 'Structure model' '_struct_conn.pdbx_role' 26 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 27 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 28 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 29 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 30 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 31 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 32 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 33 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 34 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 35 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 36 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 37 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 38 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 39 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 40 5 'Structure model' '_chem_comp.pdbx_synonyms' 41 5 'Structure model' '_database_2.pdbx_DOI' 42 5 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal XDS 'data scaling' . ? 1 SCALEPACK 'data scaling' . ? 2 X-PLOR 'model building' . ? 3 X-PLOR refinement 3.825 ? 4 XDS 'data reduction' . ? 5 X-PLOR phasing . ? 6 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O P PRO 2 ? ? O Q LEU 2 ? ? 0.12 2 1 CA P ALA 8 ? ? CA Q ASP 8 ? ? 0.14 3 1 CB P ALA 3 ? ? CB Q SER 3 ? ? 0.14 4 1 C P PRO 2 ? ? C Q LEU 2 ? ? 0.15 5 1 CA P PRO 2 ? ? CA Q LEU 2 ? ? 0.15 6 1 CA P ALA 3 ? ? CA Q SER 3 ? ? 0.16 7 1 N P ALA 3 ? ? N Q SER 3 ? ? 0.16 8 1 N P ALA 8 ? ? N Q ASP 8 ? ? 0.17 9 1 N P ALA 7 ? ? N Q PHE 7 ? ? 0.19 10 1 C P ALA 7 ? ? C Q PHE 7 ? ? 0.19 11 1 C P ALA 3 ? ? C Q SER 3 ? ? 0.20 12 1 N P MET 9 ? ? N Q LEU 9 ? ? 0.22 13 1 C P ALA 1 ? ? C Q GLN 1 ? ? 0.23 14 1 O P ALA 1 ? ? O Q GLN 1 ? ? 0.23 15 1 O P ALA 4 ? ? O Q PRO 4 ? ? 0.23 16 1 CA P ALA 1 ? ? CA Q GLN 1 ? ? 0.24 17 1 CA P ALA 7 ? ? CA Q PHE 7 ? ? 0.25 18 1 N P PRO 2 ? ? N Q LEU 2 ? ? 0.26 19 1 CB P ALA 1 ? ? CB Q GLN 1 ? ? 0.27 20 1 O P ALA 7 ? ? O Q PHE 7 ? ? 0.28 21 1 N P ALA 4 ? ? N Q PRO 4 ? ? 0.28 22 1 C P ALA 6 ? ? C Q PRO 6 ? ? 0.29 23 1 O P ALA 3 ? ? O Q SER 3 ? ? 0.31 24 1 C P ALA 4 ? ? C Q PRO 4 ? ? 0.32 25 1 CA P ALA 4 ? ? CA Q PRO 4 ? ? 0.32 26 1 O P ALA 6 ? ? O Q PRO 6 ? ? 0.32 27 1 CB P ALA 4 ? ? CB Q PRO 4 ? ? 0.40 28 1 CB P ALA 8 ? ? CB Q ASP 8 ? ? 0.41 29 1 CB P ALA 6 ? ? CB Q PRO 6 ? ? 0.44 30 1 N P ALA 6 ? ? N Q PRO 6 ? ? 0.45 31 1 CA P MET 9 ? ? CA Q LEU 9 ? ? 0.45 32 1 CA P ALA 6 ? ? CA Q PRO 6 ? ? 0.46 33 1 C P ALA 8 ? ? C Q ASP 8 ? ? 0.46 34 1 C P ALA 5 ? ? C Q PHE 5 ? ? 0.53 35 1 CB P ALA 7 ? ? CB Q PHE 7 ? ? 0.54 36 1 O P MET 9 ? ? O Q LEU 9 ? ? 0.54 37 1 C P MET 9 ? ? C Q LEU 9 ? ? 0.55 38 1 CG P MET 9 ? ? CG Q LEU 9 ? ? 0.56 39 1 CB P MET 9 ? ? CB Q LEU 9 ? ? 0.57 40 1 O P ALA 5 ? ? O Q PHE 5 ? ? 0.58 41 1 N P ALA 5 ? ? N Q PHE 5 ? ? 0.58 42 1 CA P ALA 5 ? ? CA Q PHE 5 ? ? 0.62 43 1 CB P PRO 2 ? ? CB Q LEU 2 ? ? 0.63 44 1 N P ALA 1 ? ? N Q GLN 1 ? ? 0.64 45 1 OXT P MET 9 ? ? OXT Q LEU 9 ? ? 0.69 46 1 CB P ALA 5 ? ? CB Q PHE 5 ? ? 0.73 47 1 CB P ALA 5 ? ? CG Q PHE 5 ? ? 0.75 48 1 O P MET 9 ? ? C Q LEU 9 ? ? 0.79 49 1 SD P MET 9 ? ? CD2 Q LEU 9 ? ? 0.89 50 1 O P ALA 8 ? ? O Q ASP 8 ? ? 0.92 51 1 C P ALA 4 ? ? O Q PRO 4 ? ? 1.01 52 1 C P ALA 1 ? ? O Q GLN 1 ? ? 1.02 53 1 O P ALA 5 ? ? C Q PHE 5 ? ? 1.03 54 1 O P ALA 6 ? ? C Q PRO 6 ? ? 1.04 55 1 CA P ALA 6 ? ? N Q PRO 6 ? ? 1.05 56 1 CB P ALA 6 ? ? CG Q PRO 6 ? ? 1.05 57 1 C P ALA 3 ? ? O Q SER 3 ? ? 1.09 58 1 CG P MET 9 ? ? CD2 Q LEU 9 ? ? 1.11 59 1 N P ALA 4 ? ? C Q SER 3 ? ? 1.15 60 1 C P MET 9 ? ? CA Q LEU 9 ? ? 1.15 61 1 N P PRO 2 ? ? C Q GLN 1 ? ? 1.15 62 1 O P PRO 2 ? ? C Q LEU 2 ? ? 1.15 63 1 C P ALA 5 ? ? CA Q PHE 5 ? ? 1.17 64 1 O P ALA 7 ? ? C Q PHE 7 ? ? 1.18 65 1 N P ALA 8 ? ? C Q PHE 7 ? ? 1.21 66 1 CB P PRO 2 ? ? CG Q LEU 2 ? ? 1.23 67 1 CB P ALA 4 ? ? CA Q PRO 4 ? ? 1.24 68 1 CB P ALA 1 ? ? CG Q GLN 1 ? ? 1.27 69 1 CB P ALA 7 ? ? CG Q PHE 7 ? ? 1.28 70 1 C P ALA 8 ? ? N Q LEU 9 ? ? 1.28 71 1 CA P MET 9 ? ? CB Q LEU 9 ? ? 1.28 72 1 N P ALA 5 ? ? CA Q PHE 5 ? ? 1.28 73 1 N P ALA 6 ? ? CD Q PRO 6 ? ? 1.29 74 1 C P ALA 7 ? ? O Q PHE 7 ? ? 1.29 75 1 CA P ALA 7 ? ? N Q PHE 7 ? ? 1.29 76 1 C P ALA 6 ? ? CA Q PRO 6 ? ? 1.30 77 1 CA P ALA 5 ? ? CB Q PHE 5 ? ? 1.30 78 1 N P ALA 6 ? ? C Q PHE 5 ? ? 1.30 79 1 N P ALA 3 ? ? C Q LEU 2 ? ? 1.31 80 1 C P MET 9 ? ? OXT Q LEU 9 ? ? 1.32 81 1 CA P ALA 3 ? ? N Q SER 3 ? ? 1.32 82 1 C P PRO 2 ? ? O Q LEU 2 ? ? 1.33 83 1 CA P ALA 8 ? ? N Q ASP 8 ? ? 1.33 84 1 N P ALA 7 ? ? C Q PRO 6 ? ? 1.35 85 1 O P ALA 8 ? ? C Q ASP 8 ? ? 1.35 86 1 C P ALA 7 ? ? CA Q PHE 7 ? ? 1.35 87 1 CA P ALA 4 ? ? C Q PRO 4 ? ? 1.36 88 1 CA P ALA 1 ? ? CB Q GLN 1 ? ? 1.36 89 1 C P PRO 2 ? ? CA Q LEU 2 ? ? 1.36 90 1 N P ALA 5 ? ? C Q PRO 4 ? ? 1.36 91 1 C P ALA 6 ? ? N Q PHE 7 ? ? 1.37 92 1 C P PRO 2 ? ? N Q SER 3 ? ? 1.37 93 1 CD P PRO 2 ? ? N Q LEU 2 ? ? 1.38 94 1 CB P ALA 8 ? ? CA Q ASP 8 ? ? 1.38 95 1 O P ALA 3 ? ? C Q SER 3 ? ? 1.41 96 1 CA P PRO 2 ? ? N Q LEU 2 ? ? 1.42 97 1 C P ALA 7 ? ? N Q ASP 8 ? ? 1.43 98 1 C P ALA 4 ? ? N Q PHE 5 ? ? 1.43 99 1 O P ALA 1 ? ? C Q GLN 1 ? ? 1.44 100 1 C P ALA 8 ? ? O Q ASP 8 ? ? 1.44 101 1 N P MET 9 ? ? C Q ASP 8 ? ? 1.44 102 1 CA P PRO 2 ? ? CB Q LEU 2 ? ? 1.45 103 1 CB P ALA 3 ? ? CA Q SER 3 ? ? 1.45 104 1 CA P ALA 4 ? ? N Q PRO 4 ? ? 1.45 105 1 OXT P MET 9 ? ? C Q LEU 9 ? ? 1.46 106 1 CA P ALA 1 ? ? N Q GLN 1 ? ? 1.46 107 1 CB P ALA 7 ? ? CA Q PHE 7 ? ? 1.47 108 1 CB P ALA 3 ? ? OG Q SER 3 ? ? 1.47 109 1 O P ALA 4 ? ? C Q PRO 4 ? ? 1.48 110 1 C P ALA 6 ? ? O Q PRO 6 ? ? 1.48 111 1 CA P MET 9 ? ? N Q LEU 9 ? ? 1.48 112 1 N P PRO 2 ? ? CA Q LEU 2 ? ? 1.50 113 1 CG P MET 9 ? ? CB Q LEU 9 ? ? 1.50 114 1 N P MET 9 ? ? CA Q LEU 9 ? ? 1.52 115 1 C P ALA 3 ? ? CA Q SER 3 ? ? 1.52 116 1 CA P ALA 1 ? ? C Q GLN 1 ? ? 1.53 117 1 C P ALA 3 ? ? N Q PRO 4 ? ? 1.53 118 1 C P ALA 8 ? ? CA Q ASP 8 ? ? 1.53 119 1 N P ALA 4 ? ? CA Q PRO 4 ? ? 1.53 120 1 N P ALA 8 ? ? CA Q ASP 8 ? ? 1.53 121 1 C P ALA 1 ? ? N Q LEU 2 ? ? 1.53 122 1 C P ALA 5 ? ? N Q PRO 6 ? ? 1.53 123 1 C P ALA 1 ? ? CA Q GLN 1 ? ? 1.54 124 1 CA P ALA 8 ? ? C Q ASP 8 ? ? 1.54 125 1 CA P ALA 3 ? ? C Q SER 3 ? ? 1.56 126 1 CA P ALA 6 ? ? CB Q PRO 6 ? ? 1.56 127 1 N P ALA 1 ? ? CA Q GLN 1 ? ? 1.58 128 1 C P ALA 5 ? ? O Q PHE 5 ? ? 1.60 129 1 CB P PRO 2 ? ? CA Q LEU 2 ? ? 1.61 130 1 N P ALA 3 ? ? CA Q SER 3 ? ? 1.62 131 1 CA P ALA 3 ? ? CB Q SER 3 ? ? 1.62 132 1 CG P PRO 2 ? ? CD2 Q LEU 2 ? ? 1.62 133 1 N P ALA 7 ? ? CA Q PHE 7 ? ? 1.64 134 1 CA P ALA 8 ? ? CB Q ASP 8 ? ? 1.64 135 1 CA P PRO 2 ? ? C Q LEU 2 ? ? 1.65 136 1 CB P ALA 6 ? ? CA Q PRO 6 ? ? 1.65 137 1 CA P ALA 7 ? ? CB Q PHE 7 ? ? 1.66 138 1 CB P ALA 1 ? ? CA Q GLN 1 ? ? 1.68 139 1 CB P MET 9 ? ? CG Q LEU 9 ? ? 1.70 140 1 CA P ALA 7 ? ? C Q PHE 7 ? ? 1.71 141 1 N P ALA 4 ? ? CD Q PRO 4 ? ? 1.72 142 1 C P MET 9 ? ? O Q LEU 9 ? ? 1.75 143 1 C P ALA 4 ? ? CA Q PRO 4 ? ? 1.77 144 1 CA P ALA 5 ? ? N Q PHE 5 ? ? 1.82 145 1 CB P ALA 5 ? ? CD1 Q PHE 5 ? ? 1.83 146 1 CA P ALA 4 ? ? CB Q PRO 4 ? ? 1.84 147 1 NH2 H ARG 62 ? ? OE1 Q GLN 1 ? ? 1.84 148 1 CA P ALA 6 ? ? C Q PRO 6 ? ? 1.85 149 1 CB P ALA 4 ? ? CG Q PRO 4 ? ? 1.85 150 1 CG P MET 9 ? ? CD1 Q LEU 9 ? ? 1.85 151 1 O P MET 9 ? ? OXT Q LEU 9 ? ? 1.85 152 1 CB P MET 9 ? ? CA Q LEU 9 ? ? 1.89 153 1 CB P ALA 5 ? ? CD2 Q PHE 5 ? ? 1.89 154 1 N P ALA 6 ? ? CA Q PRO 6 ? ? 1.90 155 1 CB P ALA 8 ? ? CG Q ASP 8 ? ? 1.92 156 1 CG P PRO 2 ? ? CB Q LEU 2 ? ? 1.92 157 1 CB P ALA 5 ? ? CA Q PHE 5 ? ? 1.94 158 1 CB P PRO 2 ? ? CD2 Q LEU 2 ? ? 1.94 159 1 CA P ALA 5 ? ? CG Q PHE 5 ? ? 1.94 160 1 CE P MET 9 ? ? CD2 Q LEU 9 ? ? 1.96 161 1 O P MET 9 ? ? CA Q LEU 9 ? ? 1.97 162 1 CA P ALA 6 ? ? CD Q PRO 6 ? ? 1.97 163 1 CA P MET 9 ? ? C Q LEU 9 ? ? 1.98 164 1 CA P ALA 5 ? ? C Q PHE 5 ? ? 1.98 165 1 O P ALA 5 ? ? CA Q PHE 5 ? ? 2.00 166 1 C P MET 9 ? ? CB Q LEU 9 ? ? 2.02 167 1 CB P ALA 6 ? ? CD Q PRO 6 ? ? 2.03 168 1 N P PRO 2 ? ? O Q GLN 1 ? ? 2.03 169 1 N P ALA 4 ? ? O Q SER 3 ? ? 2.04 170 1 N P ALA 5 ? ? CB Q PHE 5 ? ? 2.05 171 1 N P ALA 5 ? ? O Q PRO 4 ? ? 2.06 172 1 CB P ALA 7 ? ? CD1 Q PHE 7 ? ? 2.06 173 1 C P ALA 5 ? ? CB Q PHE 5 ? ? 2.07 174 1 OH H TYR 156 ? ? CZ Q PHE 5 ? ? 2.08 175 1 O P ALA 6 ? ? CA Q PRO 6 ? ? 2.10 176 1 CA P ALA 6 ? ? CG Q PRO 6 ? ? 2.12 177 1 OXT P MET 9 ? ? CA Q LEU 9 ? ? 2.12 178 1 CG P PRO 2 ? ? CG Q LEU 2 ? ? 2.13 179 1 N P ALA 8 ? ? O Q PHE 7 ? ? 2.14 180 1 N P ALA 6 ? ? CA Q PHE 5 ? ? 2.16 181 1 CA P ALA 6 ? ? C Q PHE 5 ? ? 2.17 182 1 CB P PRO 2 ? ? N Q LEU 2 ? ? 2.18 183 1 O P ALA 8 ? ? N Q LEU 9 ? ? 2.19 184 1 C P ALA 6 ? ? N Q PRO 6 ? ? 2.19 185 1 O H ARG 170 ? ? ND2 H ASN 174 ? ? 2.19 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C H GLY 56 ? ? N H PRO 57 ? ? CA H PRO 57 ? ? 129.01 119.30 9.71 1.50 Y 2 1 C H ARG 234 ? ? N H PRO 235 ? ? CA H PRO 235 ? ? 128.96 119.30 9.66 1.50 Y 3 1 C P ALA 1 ? ? N P PRO 2 ? ? CA P PRO 2 ? ? 128.52 119.30 9.22 1.50 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO H 2 ? ? -46.66 163.53 2 1 PRO H 15 ? ? -34.98 -71.49 3 1 GLU H 19 ? ? -170.84 140.87 4 1 ARG H 21 ? ? -104.33 67.56 5 1 ASP H 29 ? ? 60.31 65.52 6 1 ASN H 30 ? ? 59.57 2.97 7 1 ASP H 37 ? ? -167.69 89.56 8 1 SER H 38 ? ? -58.56 26.77 9 1 GLN H 48 ? ? -99.70 -60.14 10 1 TRP H 51 ? ? -59.68 -2.16 11 1 GLN H 54 ? ? -62.37 10.89 12 1 THR H 64 ? ? -43.68 -17.51 13 1 ASN H 77 ? ? -51.31 -77.29 14 1 LEU H 78 ? ? -26.07 -37.98 15 1 ASN H 86 ? ? 33.82 45.17 16 1 ALA H 89 ? ? -50.71 90.73 17 1 THR H 94 ? ? -160.54 105.79 18 1 ASP H 119 ? ? 81.05 24.84 19 1 ASP H 129 ? ? -52.76 -6.42 20 1 LEU H 160 ? ? -50.79 -74.94 21 1 HIS H 188 ? ? -172.22 133.36 22 1 SER H 195 ? ? -44.96 -9.89 23 1 PRO H 210 ? ? -65.26 -174.50 24 1 ASP H 212 ? ? -48.44 100.36 25 1 LEU H 219 ? ? -174.00 92.15 26 1 ASN H 220 ? ? 58.85 71.26 27 1 LEU H 224 ? ? -67.73 52.38 28 1 THR H 233 ? ? -42.65 108.53 29 1 PHE H 241 ? ? -100.65 -163.43 30 1 GLN H 255 ? ? -37.40 -21.84 31 1 GLU H 264 ? ? -69.37 87.96 32 1 PRO H 269 ? ? -39.35 151.10 33 1 TYR L 10 ? ? 179.05 158.05 34 1 ASN L 17 ? ? -23.69 115.08 35 1 PRO L 20 ? ? -50.99 103.30 36 1 CYS L 25 ? ? -160.31 75.86 37 1 HIS L 31 ? ? -178.88 130.82 38 1 PRO L 33 ? ? -43.24 -15.36 39 1 LYS L 41 ? ? -167.51 110.13 40 1 MET L 54 ? ? -58.89 85.68 41 1 ASP L 59 ? ? -68.96 8.99 42 1 GLU L 74 ? ? -37.11 -22.02 43 1 HIS L 84 ? ? -162.07 119.72 44 1 ASP L 85 ? ? -26.03 -40.64 45 1 SER L 86 ? ? -72.40 41.91 46 1 MET L 87 ? ? -176.51 141.65 47 1 ARG L 97 ? ? -21.15 -58.59 48 1 ALA P 7 ? ? -54.64 106.43 49 1 PHE Q 7 ? ? -43.92 99.79 # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 C1 ? A NAG 1 ? 'WRONG HAND' . 2 1 C1 ? H NAG 273 ? 'WRONG HAND' . # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero E 5 NAG 1 A NAG 1 H NAG 100 n E 5 NDG 2 A NDG 2 H NAG 101 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc NDG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAca NDG 'COMMON NAME' GMML 1.0 N-acetyl-a-D-glucopyranosamine NDG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-GlcpNAc NDG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 5 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 5 DGlcpNAca1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 2 5 'WURCS=2.0/2,2,1/[a2122h-1b_1-5_2*NCC/3=O][a2122h-1a_1-5_2*NCC/3=O]/1-2/a4-b1' WURCS PDB2Glycan 1.1.0 3 5 '[]{[(4+1)][a-D-GlcpNAc]{[(4+1)][a-D-GlcpNAc]{}}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 5 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 NDG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 5 NAG 1 n 5 NDG 2 n # _pdbx_entity_nonpoly.entity_id 6 _pdbx_entity_nonpoly.name 2-acetamido-2-deoxy-beta-D-glucopyranose _pdbx_entity_nonpoly.comp_id NAG # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1HOC _pdbx_initial_refinement_model.details 'PDB ENTRY 1HOC' #