data_1LFU # _entry.id 1LFU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1LFU pdb_00001lfu 10.2210/pdb1lfu/pdb RCSB RCSB015909 ? ? WWPDB D_1000015909 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1LFU _pdbx_database_status.recvd_initial_deposition_date 2002-04-12 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sprules, T.' 1 'Green, N.' 2 'Featherstone, M.' 3 'Gehring, K.' 4 # _citation.id primary _citation.title 'Lock and Key Binding of the HOX YPWM Peptide to the PBX Homeodomain' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 278 _citation.page_first 1053 _citation.page_last 1058 _citation.year 2003 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12409300 _citation.pdbx_database_id_DOI 10.1074/jbc.M207504200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sprules, T.' 1 ? primary 'Green, N.' 2 ? primary 'Featherstone, M.' 3 ? primary 'Gehring, K.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*GP*CP*GP*CP*AP*TP*GP*AP*TP*TP*GP*CP*CP*C)-3'" 4256.766 1 ? ? ? ? 2 polymer syn "5'-D(*GP*GP*GP*CP*AP*AP*TP*CP*AP*TP*GP*CP*GP*C)-3'" 4305.804 1 ? ? ? ? 3 polymer man 'homeobox protein PBX1' 9577.833 1 ? C42S 'homeodomain AND conserved C-terminus' ? # _entity_name_com.entity_id 3 _entity_name_com.name 'PBX, PRE-B-CELL LEUKEMIA TRANSCRIPTION FACTOR-1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DG)(DC)(DG)(DC)(DA)(DT)(DG)(DA)(DT)(DT)(DG)(DC)(DC)(DC)' GCGCATGATTGCCC A ? 2 polydeoxyribonucleotide no no '(DG)(DG)(DG)(DC)(DA)(DA)(DT)(DC)(DA)(DT)(DG)(DC)(DG)(DC)' GGGCAATCATGCGC B ? 3 'polypeptide(L)' no no ;MARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIRYKKNIGKFQEEANIYAAKTAV TA ; ;MARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIRYKKNIGKFQEEANIYAAKTAV TA ; P ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DG n 1 4 DC n 1 5 DA n 1 6 DT n 1 7 DG n 1 8 DA n 1 9 DT n 1 10 DT n 1 11 DG n 1 12 DC n 1 13 DC n 1 14 DC n 2 1 DG n 2 2 DG n 2 3 DG n 2 4 DC n 2 5 DA n 2 6 DA n 2 7 DT n 2 8 DC n 2 9 DA n 2 10 DT n 2 11 DG n 2 12 DC n 2 13 DG n 2 14 DC n 3 1 MET n 3 2 ALA n 3 3 ARG n 3 4 ARG n 3 5 LYS n 3 6 ARG n 3 7 ARG n 3 8 ASN n 3 9 PHE n 3 10 ASN n 3 11 LYS n 3 12 GLN n 3 13 ALA n 3 14 THR n 3 15 GLU n 3 16 ILE n 3 17 LEU n 3 18 ASN n 3 19 GLU n 3 20 TYR n 3 21 PHE n 3 22 TYR n 3 23 SER n 3 24 HIS n 3 25 LEU n 3 26 SER n 3 27 ASN n 3 28 PRO n 3 29 TYR n 3 30 PRO n 3 31 SER n 3 32 GLU n 3 33 GLU n 3 34 ALA n 3 35 LYS n 3 36 GLU n 3 37 GLU n 3 38 LEU n 3 39 ALA n 3 40 LYS n 3 41 LYS n 3 42 SER n 3 43 GLY n 3 44 ILE n 3 45 THR n 3 46 VAL n 3 47 SER n 3 48 GLN n 3 49 VAL n 3 50 SER n 3 51 ASN n 3 52 TRP n 3 53 PHE n 3 54 GLY n 3 55 ASN n 3 56 LYS n 3 57 ARG n 3 58 ILE n 3 59 ARG n 3 60 TYR n 3 61 LYS n 3 62 LYS n 3 63 ASN n 3 64 ILE n 3 65 GLY n 3 66 LYS n 3 67 PHE n 3 68 GLN n 3 69 GLU n 3 70 GLU n 3 71 ALA n 3 72 ASN n 3 73 ILE n 3 74 TYR n 3 75 ALA n 3 76 ALA n 3 77 LYS n 3 78 THR n 3 79 ALA n 3 80 VAL n 3 81 THR n 3 82 ALA n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene PBX1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)Gold' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pET 11a' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP PBX1_MOUSE 3 ;ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQEEANIYAAKTAVT A ; 233 P41778 ? 2 PDB 1LFU 1 ? ? 1LFU ? 3 PDB 1LFU 2 ? ? 1LFU ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1LFU P 2 ? 82 ? P41778 233 ? 313 ? 1 78 2 2 1LFU A 1 ? 14 ? 1LFU 1 ? 14 ? 1 14 3 3 1LFU B 1 ? 14 ? 1LFU 15 ? 28 ? 15 28 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1LFU MET P 1 ? UNP P41778 ? ? 'initiating methionine' 0 1 1 1LFU SER P 42 ? UNP P41778 CYS 273 'engineered mutation' 38 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 3D_15N-separated_NOESY 2 1 1 HNHA 3 3 3 3D_13C-separated_NOESY 4 4 4 '2D NOESY' 5 5 5 't1-1H coupled 15N HSQC' 6 6 6 't1-1H coupled 13C HSQC, 13C HMQC' 7 1 1 't1-1H coupled 15N HSQC' 8 4 4 't1-1H coupled 13C HSQC, 13C HMQC' 9 3 3 '13C filtered 2D NOESY' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 303 ambient 7.0 ? ? K 2 303 ambient 7.0 ? ? K 3 303 ambient 7.0 ? ? K 4 303 ambient 7.0 ? ? K 5 310 ambient 6.6 ? ? K 6 310 ambient 6.6 ? ? K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '1.5 mM U-15N PBX:DNA; 20 mM phophate buffer' '90% H2O/10% D2O' 2 '1 mM U-15N,13C PBX:DNA; 20 mM phosphate buffer' '90% H2O/10% D2O' 3 '1.9 mM U-15N,13C PBX:DNA; 20 mM phosphate buffer' '100% D2O' 4 '1.4 mM PBX:DNA; 20 mM phosphate buffer' '100% D2O' 5 '2.5 mM PBX:DNA; 5% q=3.0 DMPC:DHPC 20 mM phosphate buffer' '100% D2O' 6 '1 mM U-15N PBX:DNA; 5% q=3.0 DMPC:DHPC; 20 mM sodium phosphate' '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.field_strength 1 ? Bruker DRX 500 2 ? Varian INOVA 750 3 ? Varian INOVA 800 # _pdbx_nmr_refine.entry_id 1LFU _pdbx_nmr_refine.method 'dynamical annealing' _pdbx_nmr_refine.details ;Structures based on a total of 2747 restraints: 2508 NOE-derived distance restraints, 84 hydrogen bonds, 68 dihedral angle and J-coupling restraints and 87 residual dipolar couplings. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1LFU _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'lowest energy with acceptable geometry' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1LFU _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal XwinNMR 2.1 collection 'proprietary software' 1 VNMR 6.1B collection 'proprietary software' 2 Gifa 4.3 processing 'Pons, J. L., Malliavin, T. E., and Delsuc, M. A.' 3 XEASY 1.3.13 'data analysis' 'Bartels, C., Xia, T.-H., Billeter, M., Guntert, P., and Wuthrich K.' 4 ARIA 0.5 'data analysis' ;Nigles, M., Macias, M. J., O'Donoghue, S. I., and Oschkinat, H. ; 5 CNS '0.9, 1.1' refinement 'Brunger, A. T., et al.' 6 # _exptl.entry_id 1LFU _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.crystal_id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? # _struct.entry_id 1LFU _struct.title 'NMR Solution Structure of the Extended PBX Homeodomain Bound to DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1LFU _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'protein-dna complex, TRANSCRIPTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN C 10 ? TYR C 22 ? ASN P 9 TYR P 21 1 ? 13 HELX_P HELX_P2 2 SER C 31 ? GLY C 43 ? SER P 27 GLY P 39 1 ? 13 HELX_P HELX_P3 3 THR C 45 ? ASN C 63 ? THR P 41 ASN P 59 1 ? 19 HELX_P HELX_P4 4 ASN C 63 ? LYS C 77 ? ASN P 59 LYS P 73 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 13 N1 ? ? A DC 2 B DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 13 O6 ? ? A DC 2 B DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 13 N2 ? ? A DC 2 B DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 12 N3 ? ? A DG 3 B DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 12 O2 ? ? A DG 3 B DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 12 N4 ? ? A DG 3 B DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 11 N1 ? ? A DC 4 B DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 11 O6 ? ? A DC 4 B DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 11 N2 ? ? A DC 4 B DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 10 N3 ? ? A DA 5 B DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 10 O4 ? ? A DA 5 B DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 9 N1 ? ? A DT 6 B DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 9 N6 ? ? A DT 6 B DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 7 B DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 7 B DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 7 B DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 8 B DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 8 B DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 9 B DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 9 B DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 10 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 10 B DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DT 10 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 10 B DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DC 4 N3 ? ? A DG 11 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DC 4 O2 ? ? A DG 11 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 11 O6 ? ? ? 1_555 B DC 4 N4 ? ? A DG 11 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 12 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 12 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 12 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 12 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 12 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 12 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 13 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 13 B DG 16 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog30 hydrog ? ? A DC 14 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 14 B DG 15 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 1LFU _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1LFU _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DC 4 4 4 DC C A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DT 6 6 6 DT T A . n A 1 7 DG 7 7 7 DG G A . n A 1 8 DA 8 8 8 DA A A . n A 1 9 DT 9 9 9 DT T A . n A 1 10 DT 10 10 10 DT T A . n A 1 11 DG 11 11 11 DG G A . n A 1 12 DC 12 12 12 DC C A . n A 1 13 DC 13 13 13 DC C A . n A 1 14 DC 14 14 14 DC C A . n B 2 1 DG 1 15 15 DG G B . n B 2 2 DG 2 16 16 DG G B . n B 2 3 DG 3 17 17 DG G B . n B 2 4 DC 4 18 18 DC C B . n B 2 5 DA 5 19 19 DA A B . n B 2 6 DA 6 20 20 DA A B . n B 2 7 DT 7 21 21 DT T B . n B 2 8 DC 8 22 22 DC C B . n B 2 9 DA 9 23 23 DA A B . n B 2 10 DT 10 24 24 DT T B . n B 2 11 DG 11 25 25 DG G B . n B 2 12 DC 12 26 26 DC C B . n B 2 13 DG 13 27 27 DG G B . n B 2 14 DC 14 28 28 DC C B . n C 3 1 MET 1 0 0 MET MET P . n C 3 2 ALA 2 1 1 ALA ALA P . n C 3 3 ARG 3 2 2 ARG ARG P . n C 3 4 ARG 4 3 3 ARG ARG P . n C 3 5 LYS 5 4 4 LYS LYS P . n C 3 6 ARG 6 5 5 ARG ARG P . n C 3 7 ARG 7 6 6 ARG ARG P . n C 3 8 ASN 8 7 7 ASN ASN P . n C 3 9 PHE 9 8 8 PHE PHE P . n C 3 10 ASN 10 9 9 ASN ASN P . n C 3 11 LYS 11 10 10 LYS LYS P . n C 3 12 GLN 12 11 11 GLN GLN P . n C 3 13 ALA 13 12 12 ALA ALA P . n C 3 14 THR 14 13 13 THR THR P . n C 3 15 GLU 15 14 14 GLU GLU P . n C 3 16 ILE 16 15 15 ILE ILE P . n C 3 17 LEU 17 16 16 LEU LEU P . n C 3 18 ASN 18 17 17 ASN ASN P . n C 3 19 GLU 19 18 18 GLU GLU P . n C 3 20 TYR 20 19 19 TYR TYR P . n C 3 21 PHE 21 20 20 PHE PHE P . n C 3 22 TYR 22 21 21 TYR TYR P . n C 3 23 SER 23 22 22 SER SER P . n C 3 24 HIS 24 23 23 HIS HIS P . n C 3 25 LEU 25 23 23 LEU LEU P A n C 3 26 SER 26 23 23 SER SER P B n C 3 27 ASN 27 23 23 ASN ASN P C n C 3 28 PRO 28 24 24 PRO PRO P . n C 3 29 TYR 29 25 25 TYR TYR P . n C 3 30 PRO 30 26 26 PRO PRO P . n C 3 31 SER 31 27 27 SER SER P . n C 3 32 GLU 32 28 28 GLU GLU P . n C 3 33 GLU 33 29 29 GLU GLU P . n C 3 34 ALA 34 30 30 ALA ALA P . n C 3 35 LYS 35 31 31 LYS LYS P . n C 3 36 GLU 36 32 32 GLU GLU P . n C 3 37 GLU 37 33 33 GLU GLU P . n C 3 38 LEU 38 34 34 LEU LEU P . n C 3 39 ALA 39 35 35 ALA ALA P . n C 3 40 LYS 40 36 36 LYS LYS P . n C 3 41 LYS 41 37 37 LYS LYS P . n C 3 42 SER 42 38 38 SER SER P . n C 3 43 GLY 43 39 39 GLY GLY P . n C 3 44 ILE 44 40 40 ILE ILE P . n C 3 45 THR 45 41 41 THR THR P . n C 3 46 VAL 46 42 42 VAL VAL P . n C 3 47 SER 47 43 43 SER SER P . n C 3 48 GLN 48 44 44 GLN GLN P . n C 3 49 VAL 49 45 45 VAL VAL P . n C 3 50 SER 50 46 46 SER SER P . n C 3 51 ASN 51 47 47 ASN ASN P . n C 3 52 TRP 52 48 48 TRP TRP P . n C 3 53 PHE 53 49 49 PHE PHE P . n C 3 54 GLY 54 50 50 GLY GLY P . n C 3 55 ASN 55 51 51 ASN ASN P . n C 3 56 LYS 56 52 52 LYS LYS P . n C 3 57 ARG 57 53 53 ARG ARG P . n C 3 58 ILE 58 54 54 ILE ILE P . n C 3 59 ARG 59 55 55 ARG ARG P . n C 3 60 TYR 60 56 56 TYR TYR P . n C 3 61 LYS 61 57 57 LYS LYS P . n C 3 62 LYS 62 58 58 LYS LYS P . n C 3 63 ASN 63 59 59 ASN ASN P . n C 3 64 ILE 64 60 60 ILE ILE P . n C 3 65 GLY 65 61 61 GLY GLY P . n C 3 66 LYS 66 62 62 LYS LYS P . n C 3 67 PHE 67 63 63 PHE PHE P . n C 3 68 GLN 68 64 64 GLN GLN P . n C 3 69 GLU 69 65 65 GLU GLU P . n C 3 70 GLU 70 66 66 GLU GLU P . n C 3 71 ALA 71 67 67 ALA ALA P . n C 3 72 ASN 72 68 68 ASN ASN P . n C 3 73 ILE 73 69 69 ILE ILE P . n C 3 74 TYR 74 70 70 TYR TYR P . n C 3 75 ALA 75 71 71 ALA ALA P . n C 3 76 ALA 76 72 72 ALA ALA P . n C 3 77 LYS 77 73 73 LYS LYS P . n C 3 78 THR 78 74 74 THR THR P . n C 3 79 ALA 79 75 75 ALA ALA P . n C 3 80 VAL 80 76 76 VAL VAL P . n C 3 81 THR 81 77 77 THR THR P . n C 3 82 ALA 82 78 78 ALA ALA P . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-01-14 2 'Structure model' 1 1 2008-04-28 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-02-01 5 'Structure model' 1 4 2021-10-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Structure summary' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' database_2 2 5 'Structure model' pdbx_nmr_software 3 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_nmr_software.name' 4 5 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 "H1'" B DT 24 ? ? HG2 P LYS 4 ? ? 1.23 2 1 O P ARG 5 ? ? H P ASN 7 ? ? 1.31 3 1 O P ASN 59 ? ? H P LYS 62 ? ? 1.52 4 1 O P LEU 34 ? ? H P SER 38 ? ? 1.53 5 1 "H2''" A DG 7 ? ? "O5'" A DA 8 ? ? 1.53 6 1 "H1'" A DG 7 ? ? O P LYS 4 ? ? 1.57 7 2 O P LEU 34 ? ? H P SER 38 ? ? 1.55 8 2 O P ASN 59 ? ? H P LYS 62 ? ? 1.56 9 2 O P PHE 63 ? ? H P ALA 67 ? ? 1.57 10 2 H61 A DA 5 ? ? O4 B DT 24 ? ? 1.58 11 3 O P ASN 59 ? ? H P LYS 62 ? ? 1.52 12 3 O P LEU 34 ? ? H P SER 38 ? ? 1.56 13 3 O4 A DT 9 ? ? H61 B DA 20 ? ? 1.58 14 4 O P LEU 34 ? ? H P SER 38 ? ? 1.50 15 4 O2 B DT 24 ? ? HG2 P LYS 4 ? ? 1.52 16 4 O P ASN 59 ? ? H P LYS 62 ? ? 1.54 17 4 "H2''" A DG 7 ? ? "O5'" A DA 8 ? ? 1.55 18 4 O P THR 41 ? ? H P GLN 44 ? ? 1.57 19 4 "H1'" B DC 18 ? ? "O4'" B DA 19 ? ? 1.57 20 4 O4 A DT 9 ? ? H61 B DA 20 ? ? 1.59 21 4 O P ALA 30 ? ? H P LEU 34 ? ? 1.59 22 5 O P THR 41 ? ? H P GLN 44 ? ? 1.46 23 5 O P LEU 34 ? ? H P SER 38 ? ? 1.48 24 5 O P ASN 59 ? ? H P LYS 62 ? ? 1.50 25 5 O P PHE 63 ? ? H P ALA 67 ? ? 1.53 26 5 "H1'" B DC 18 ? ? "O5'" B DA 19 ? ? 1.59 27 6 "H2''" A DG 7 ? ? "O5'" A DA 8 ? ? 1.56 28 6 H61 A DA 5 ? ? O4 B DT 24 ? ? 1.57 29 6 O P LEU 34 ? ? H P SER 38 ? ? 1.58 30 6 O P ASN 59 ? ? H P LYS 62 ? ? 1.58 31 6 O4 A DT 9 ? ? H61 B DA 20 ? ? 1.59 32 7 O P ASN 59 ? ? H P LYS 62 ? ? 1.51 33 7 O P LEU 34 ? ? H P SER 38 ? ? 1.56 34 7 "H2''" A DG 7 ? ? "O5'" A DA 8 ? ? 1.57 35 7 O4 A DT 9 ? ? H61 B DA 20 ? ? 1.59 36 7 O P PHE 63 ? ? H P ALA 67 ? ? 1.60 37 8 O P ARG 5 ? ? H P ASN 7 ? ? 1.42 38 8 O P ASN 59 ? ? H P LYS 62 ? ? 1.52 39 8 O P LEU 34 ? ? H P SER 38 ? ? 1.55 40 8 O P THR 41 ? ? H P GLN 44 ? ? 1.55 41 8 H61 A DA 5 ? ? O4 B DT 24 ? ? 1.56 42 8 O4 A DT 9 ? ? H61 B DA 20 ? ? 1.57 43 8 O P PHE 63 ? ? H P ALA 67 ? ? 1.58 44 9 "H1'" B DT 24 ? ? HG2 P LYS 4 ? ? 1.10 45 9 "H2''" A DG 7 ? ? "O5'" A DA 8 ? ? 1.43 46 9 O P ASN 59 ? ? H P LYS 62 ? ? 1.52 47 9 O P LEU 34 ? ? H P SER 38 ? ? 1.57 48 10 O P ALA 1 ? ? HH11 P ARG 3 ? ? 1.51 49 10 O P ASN 59 ? ? H P LYS 62 ? ? 1.52 50 10 O P LEU 34 ? ? H P SER 38 ? ? 1.54 51 10 H61 A DA 5 ? ? O4 B DT 24 ? ? 1.54 52 10 O P PHE 63 ? ? H P ALA 67 ? ? 1.58 53 10 O4 A DT 9 ? ? H61 B DA 20 ? ? 1.60 54 11 O P ASN 59 ? ? H P LYS 62 ? ? 1.50 55 11 O P LEU 34 ? ? H P SER 38 ? ? 1.57 56 11 H61 A DA 5 ? ? O4 B DT 24 ? ? 1.59 57 12 O P ASN 59 ? ? H P LYS 62 ? ? 1.49 58 12 O P LEU 34 ? ? H P SER 38 ? ? 1.52 59 12 "H2''" A DG 7 ? ? "O5'" A DA 8 ? ? 1.59 60 13 "H1'" B DT 24 ? ? HG2 P LYS 4 ? ? 1.19 61 13 O P LEU 34 ? ? H P SER 38 ? ? 1.52 62 13 O P ASN 59 ? ? H P LYS 62 ? ? 1.53 63 13 O P ALA 30 ? ? H P LEU 34 ? ? 1.59 64 13 O4 A DT 9 ? ? H61 B DA 20 ? ? 1.60 65 14 "H1'" B DT 24 ? ? HG2 P LYS 4 ? ? 1.16 66 14 O P ASN 59 ? ? H P LYS 62 ? ? 1.51 67 14 O P LEU 34 ? ? H P SER 38 ? ? 1.52 68 14 O P THR 41 ? ? H P GLN 44 ? ? 1.53 69 14 O P PHE 63 ? ? H P ALA 67 ? ? 1.56 70 14 O4 A DT 9 ? ? H61 B DA 20 ? ? 1.58 71 15 O2 B DT 24 ? ? HG2 P LYS 4 ? ? 1.45 72 15 O P LEU 34 ? ? H P SER 38 ? ? 1.52 73 15 O P THR 41 ? ? H P GLN 44 ? ? 1.56 74 15 O P ALA 30 ? ? H P LEU 34 ? ? 1.57 75 15 O P ASN 59 ? ? H P LYS 62 ? ? 1.57 76 16 "H1'" B DT 24 ? ? HG2 P LYS 4 ? ? 1.26 77 16 O P ASN 59 ? ? H P LYS 62 ? ? 1.55 78 16 O4 A DT 9 ? ? H61 B DA 20 ? ? 1.58 79 17 O P ASN 59 ? ? H P LYS 62 ? ? 1.50 80 17 O P LEU 34 ? ? H P SER 38 ? ? 1.51 81 17 H61 A DA 5 ? ? O4 B DT 24 ? ? 1.53 82 17 O4 A DT 9 ? ? H61 B DA 20 ? ? 1.58 83 17 O P LYS 73 ? ? HG1 P THR 74 ? ? 1.59 84 18 "H1'" B DT 24 ? ? HG2 P LYS 4 ? ? 1.26 85 18 O P ASN 59 ? ? H P LYS 62 ? ? 1.48 86 18 O P LEU 34 ? ? H P SER 38 ? ? 1.54 87 18 O4 A DT 9 ? ? H61 B DA 20 ? ? 1.57 88 18 O P PHE 63 ? ? H P ALA 67 ? ? 1.59 89 19 O P LEU 34 ? ? H P SER 38 ? ? 1.51 90 19 O P PHE 63 ? ? H P ALA 67 ? ? 1.55 91 19 H61 A DA 5 ? ? O4 B DT 24 ? ? 1.56 92 19 O4 A DT 9 ? ? H61 B DA 20 ? ? 1.56 93 19 O P ALA 30 ? ? H P LEU 34 ? ? 1.57 94 19 O P ASN 59 ? ? H P LYS 62 ? ? 1.59 95 20 O P LEU 34 ? ? H P SER 38 ? ? 1.52 96 20 O4 A DT 9 ? ? H61 B DA 20 ? ? 1.57 97 20 O P PHE 63 ? ? H P ALA 67 ? ? 1.59 98 20 O P ASN 59 ? ? H P LYS 62 ? ? 1.60 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA P 1 ? ? 77.14 178.90 2 1 ARG P 2 ? ? -50.56 -83.38 3 1 LYS P 4 ? ? -177.44 -49.91 4 1 ARG P 5 ? ? -161.39 -100.09 5 1 ARG P 6 ? ? 48.36 -48.64 6 1 ASN P 7 ? ? -55.27 -98.10 7 1 PHE P 8 ? ? -57.00 100.49 8 1 TYR P 21 ? ? -63.66 11.02 9 1 SER P 23 B ? -58.21 -7.54 10 1 PRO P 24 ? ? -63.88 48.93 11 1 PRO P 26 ? ? -51.45 -150.57 12 1 ILE P 40 ? ? -107.59 -163.51 13 1 VAL P 42 ? ? -26.38 -74.45 14 1 LYS P 57 ? ? -46.27 -17.41 15 1 ILE P 60 ? ? -13.86 -72.05 16 1 LYS P 73 ? ? -99.24 40.56 17 1 THR P 77 ? ? 53.29 96.33 18 2 ALA P 1 ? ? -167.57 26.61 19 2 ARG P 2 ? ? -63.38 37.04 20 2 ARG P 3 ? ? -177.02 -175.42 21 2 LYS P 4 ? ? -178.92 -41.25 22 2 ARG P 6 ? ? 155.94 -28.39 23 2 ASN P 7 ? ? -67.61 -83.62 24 2 TYR P 21 ? ? -59.35 6.93 25 2 ASN P 23 C ? -156.04 70.20 26 2 PRO P 24 ? ? -74.96 49.36 27 2 PRO P 26 ? ? -48.80 -154.30 28 2 ILE P 40 ? ? -107.28 -163.02 29 2 VAL P 42 ? ? -27.08 -75.52 30 2 ILE P 60 ? ? -13.88 -69.79 31 2 LYS P 73 ? ? -68.59 -172.76 32 2 THR P 74 ? ? 53.68 120.39 33 3 ARG P 2 ? ? -52.47 -96.55 34 3 LYS P 4 ? ? 179.49 -36.94 35 3 ARG P 6 ? ? 79.36 -36.30 36 3 ASN P 7 ? ? -55.78 -101.33 37 3 TYR P 21 ? ? -59.90 11.39 38 3 SER P 23 B ? -58.22 -3.10 39 3 ASN P 23 C ? -153.97 72.42 40 3 PRO P 24 ? ? -69.47 70.52 41 3 PRO P 26 ? ? -54.81 -150.56 42 3 ILE P 40 ? ? -104.08 -166.10 43 3 VAL P 42 ? ? -25.16 -76.36 44 3 LYS P 57 ? ? -44.96 -17.28 45 3 ASN P 59 ? ? -143.15 45.80 46 3 ILE P 60 ? ? -13.90 -71.03 47 3 LYS P 73 ? ? -68.92 72.48 48 3 ALA P 75 ? ? -78.99 -75.88 49 3 THR P 77 ? ? -93.30 -66.66 50 4 ALA P 1 ? ? -167.28 108.03 51 4 ARG P 2 ? ? -54.56 -70.13 52 4 LYS P 4 ? ? -171.09 -78.03 53 4 ARG P 6 ? ? 138.88 -30.10 54 4 ASN P 7 ? ? -59.11 -97.03 55 4 TYR P 21 ? ? -57.97 10.56 56 4 SER P 23 B ? -58.72 -9.96 57 4 ASN P 23 C ? -173.03 70.52 58 4 PRO P 26 ? ? -66.31 91.11 59 4 SER P 27 ? ? -37.73 167.62 60 4 ILE P 40 ? ? -104.88 -165.64 61 4 VAL P 42 ? ? -21.86 -78.32 62 4 LYS P 57 ? ? -46.29 -19.59 63 4 ILE P 60 ? ? -13.69 -71.59 64 4 LYS P 73 ? ? -68.89 -142.50 65 4 THR P 74 ? ? 60.23 157.51 66 5 ALA P 1 ? ? -167.26 -162.03 67 5 ARG P 2 ? ? -45.71 -87.62 68 5 LYS P 4 ? ? -179.31 -67.87 69 5 ARG P 6 ? ? 157.18 -28.89 70 5 ASN P 7 ? ? -60.10 -89.66 71 5 TYR P 21 ? ? -61.39 4.98 72 5 SER P 23 B ? -59.91 -8.79 73 5 PRO P 24 ? ? -66.91 61.53 74 5 SER P 27 ? ? -36.19 159.75 75 5 ILE P 40 ? ? -101.75 -168.88 76 5 VAL P 42 ? ? 17.43 -83.00 77 5 ILE P 54 ? ? -60.42 6.03 78 5 ILE P 60 ? ? -14.20 -67.49 79 5 THR P 77 ? ? -146.22 -46.77 80 6 ALA P 1 ? ? -71.60 -151.09 81 6 ARG P 2 ? ? -49.77 -99.03 82 6 LYS P 4 ? ? -178.19 -76.13 83 6 ARG P 6 ? ? 143.31 -25.07 84 6 ASN P 7 ? ? -56.99 -94.77 85 6 TYR P 21 ? ? -56.84 6.04 86 6 SER P 23 B ? -58.12 -8.44 87 6 ASN P 23 C ? -159.60 66.88 88 6 PRO P 26 ? ? -44.42 -151.96 89 6 ILE P 40 ? ? -105.68 -163.82 90 6 VAL P 42 ? ? -26.00 -75.47 91 6 ILE P 60 ? ? -14.21 -71.52 92 6 LYS P 73 ? ? -68.98 -169.28 93 6 THR P 74 ? ? 52.23 120.18 94 7 ARG P 2 ? ? -51.42 -94.20 95 7 ARG P 3 ? ? -176.34 148.74 96 7 LYS P 4 ? ? 179.95 -55.18 97 7 ARG P 6 ? ? 148.19 -29.93 98 7 ASN P 7 ? ? -61.28 -95.66 99 7 TYR P 21 ? ? -56.19 2.43 100 7 SER P 23 B ? -58.26 -4.09 101 7 PRO P 24 ? ? -67.53 55.84 102 7 PRO P 26 ? ? -60.14 -151.16 103 7 ILE P 40 ? ? -108.71 -162.13 104 7 VAL P 42 ? ? -27.23 -74.13 105 7 ASN P 51 ? ? -65.24 -77.96 106 7 LYS P 57 ? ? -46.43 -15.89 107 7 ILE P 60 ? ? -13.71 -69.38 108 8 ALA P 1 ? ? -167.05 -29.46 109 8 ARG P 2 ? ? -48.36 89.37 110 8 LYS P 4 ? ? -178.54 -28.14 111 8 ARG P 5 ? ? -147.86 -155.70 112 8 ARG P 6 ? ? 57.09 -31.82 113 8 ASN P 7 ? ? -55.01 -90.05 114 8 TYR P 21 ? ? -62.77 8.69 115 8 ASN P 23 C ? -150.74 69.70 116 8 PRO P 26 ? ? -46.36 -151.63 117 8 ILE P 40 ? ? -103.15 -166.50 118 8 VAL P 42 ? ? -21.41 -77.29 119 8 LYS P 57 ? ? -47.54 -18.13 120 8 ASN P 59 ? ? -140.93 44.25 121 8 ILE P 60 ? ? -13.88 -69.07 122 8 LYS P 73 ? ? -68.91 86.31 123 8 THR P 77 ? ? 47.83 -171.20 124 9 ALA P 1 ? ? -166.25 -157.73 125 9 ARG P 2 ? ? -47.69 -87.02 126 9 LYS P 4 ? ? -177.36 -60.12 127 9 ARG P 6 ? ? 132.17 -31.87 128 9 ASN P 7 ? ? -60.24 -91.76 129 9 TYR P 21 ? ? -66.90 14.53 130 9 SER P 23 B ? -57.84 -9.71 131 9 PRO P 24 ? ? -63.38 56.15 132 9 PRO P 26 ? ? -49.95 -150.59 133 9 ILE P 40 ? ? -109.08 -162.19 134 9 VAL P 42 ? ? -27.29 -74.31 135 9 LYS P 57 ? ? -45.78 -18.35 136 9 ILE P 60 ? ? -13.79 -72.71 137 9 ALA P 72 ? ? -67.54 4.37 138 10 ALA P 1 ? ? -167.83 -24.32 139 10 ARG P 2 ? ? -61.99 82.47 140 10 ARG P 3 ? ? -171.01 145.72 141 10 LYS P 4 ? ? -178.52 -40.34 142 10 ARG P 6 ? ? 139.21 -24.23 143 10 ASN P 7 ? ? -70.77 -97.55 144 10 TYR P 21 ? ? -58.52 7.00 145 10 ASN P 23 C ? -153.36 67.18 146 10 PRO P 26 ? ? -49.64 -150.00 147 10 ILE P 40 ? ? -108.93 -161.88 148 10 VAL P 42 ? ? -28.04 -74.64 149 10 ILE P 60 ? ? -13.90 -71.64 150 10 LYS P 73 ? ? -68.96 -169.18 151 10 THR P 74 ? ? 52.53 121.10 152 10 THR P 77 ? ? 62.89 -78.04 153 11 ARG P 2 ? ? -54.48 -81.42 154 11 LYS P 4 ? ? -171.80 -77.62 155 11 ARG P 5 ? ? -172.97 15.99 156 11 ASN P 7 ? ? -55.36 -94.63 157 11 TYR P 21 ? ? -58.00 6.64 158 11 ASN P 23 C ? -155.89 70.42 159 11 PRO P 26 ? ? -61.71 94.55 160 11 SER P 27 ? ? -37.58 166.42 161 11 ILE P 40 ? ? -106.54 -163.74 162 11 VAL P 42 ? ? -23.72 -76.10 163 11 ILE P 60 ? ? -13.50 -64.74 164 11 LYS P 73 ? ? -69.01 -145.60 165 11 THR P 74 ? ? 80.29 -25.35 166 11 THR P 77 ? ? 59.75 98.24 167 12 ALA P 1 ? ? 79.61 155.61 168 12 ARG P 2 ? ? -51.68 -92.87 169 12 ARG P 3 ? ? -176.44 145.86 170 12 LYS P 4 ? ? -179.79 -52.90 171 12 ARG P 6 ? ? 136.89 -28.43 172 12 ASN P 7 ? ? -63.30 -92.33 173 12 PHE P 8 ? ? -58.90 107.21 174 12 TYR P 21 ? ? -57.26 5.41 175 12 SER P 23 B ? -57.77 -8.48 176 12 ASN P 23 C ? -150.05 65.96 177 12 PRO P 24 ? ? -69.92 50.29 178 12 PRO P 26 ? ? -47.20 -152.62 179 12 ILE P 40 ? ? -107.04 -162.55 180 12 VAL P 42 ? ? -26.73 -74.56 181 12 ILE P 60 ? ? -13.37 -69.67 182 12 GLN P 64 ? ? -57.77 -70.20 183 12 THR P 77 ? ? 60.47 73.03 184 13 ARG P 2 ? ? -50.91 -91.54 185 13 LYS P 4 ? ? -177.68 -58.90 186 13 ARG P 5 ? ? -164.97 102.33 187 13 ARG P 6 ? ? -161.17 -41.10 188 13 ASN P 7 ? ? -54.25 -89.55 189 13 TYR P 21 ? ? -65.80 11.42 190 13 ASN P 23 C ? -161.07 69.59 191 13 PRO P 26 ? ? -64.19 92.08 192 13 SER P 27 ? ? -39.36 166.20 193 13 ILE P 40 ? ? -108.05 -162.89 194 13 VAL P 42 ? ? -24.13 -76.80 195 13 LYS P 57 ? ? -46.88 -18.17 196 13 ILE P 60 ? ? -13.59 -71.93 197 13 LYS P 73 ? ? -68.82 -106.82 198 13 THR P 74 ? ? 57.99 146.89 199 13 ALA P 75 ? ? 73.60 -77.79 200 13 VAL P 76 ? ? 43.27 94.70 201 14 ARG P 2 ? ? -51.53 -92.01 202 14 LYS P 4 ? ? -177.38 -49.29 203 14 ARG P 5 ? ? -161.08 -122.30 204 14 ARG P 6 ? ? 44.92 5.90 205 14 ASN P 7 ? ? -87.13 -83.81 206 14 TYR P 21 ? ? -59.86 7.60 207 14 PRO P 24 ? ? -66.23 63.94 208 14 SER P 27 ? ? -37.03 158.45 209 14 ILE P 40 ? ? -101.56 -168.64 210 14 VAL P 42 ? ? 19.59 -81.60 211 14 LYS P 57 ? ? -47.07 -19.03 212 14 ILE P 60 ? ? -13.58 -71.57 213 14 LYS P 73 ? ? -68.92 -117.54 214 14 THR P 74 ? ? 56.13 149.82 215 15 ALA P 1 ? ? 78.78 168.84 216 15 ARG P 2 ? ? -52.91 -95.64 217 15 LYS P 4 ? ? -177.32 -64.58 218 15 ARG P 6 ? ? 157.87 -28.95 219 15 ASN P 7 ? ? -66.06 -98.53 220 15 PHE P 8 ? ? -56.17 100.35 221 15 TYR P 21 ? ? -59.08 5.40 222 15 ASN P 23 C ? -157.89 72.07 223 15 PRO P 26 ? ? -65.16 89.61 224 15 SER P 27 ? ? -35.52 166.36 225 15 ILE P 40 ? ? -104.40 -166.07 226 15 VAL P 42 ? ? -21.46 -78.03 227 15 ILE P 60 ? ? -13.80 -72.06 228 15 LYS P 73 ? ? -68.86 -112.88 229 15 THR P 74 ? ? 62.13 138.32 230 16 ARG P 2 ? ? -51.85 -82.67 231 16 LYS P 4 ? ? -177.74 -44.26 232 16 ARG P 5 ? ? -164.54 -40.55 233 16 ARG P 6 ? ? -28.94 -34.38 234 16 ASN P 7 ? ? -56.14 -95.88 235 16 TYR P 21 ? ? -63.97 10.64 236 16 PRO P 26 ? ? -54.96 -152.81 237 16 ILE P 40 ? ? -105.15 -165.97 238 16 VAL P 42 ? ? -23.82 -75.04 239 16 LYS P 57 ? ? -48.04 -19.81 240 16 ILE P 60 ? ? -13.91 -71.34 241 16 LYS P 73 ? ? -99.24 36.88 242 16 THR P 77 ? ? 60.71 85.87 243 17 ALA P 1 ? ? -165.95 29.62 244 17 ARG P 2 ? ? -62.87 41.49 245 17 ARG P 3 ? ? -177.89 -173.88 246 17 LYS P 4 ? ? -179.23 -43.97 247 17 ARG P 6 ? ? 150.73 -27.29 248 17 ASN P 7 ? ? -61.46 -92.58 249 17 TYR P 21 ? ? -60.83 8.42 250 17 SER P 23 B ? -58.39 -9.41 251 17 ASN P 23 C ? -160.51 65.74 252 17 PRO P 26 ? ? -47.73 -151.34 253 17 ILE P 40 ? ? -105.77 -164.01 254 17 VAL P 42 ? ? -25.23 -76.18 255 17 ILE P 60 ? ? -13.95 -70.25 256 17 LYS P 73 ? ? -68.92 -144.88 257 17 THR P 74 ? ? 76.37 -11.83 258 18 ARG P 2 ? ? -52.00 -85.38 259 18 ARG P 3 ? ? -176.37 -179.55 260 18 LYS P 4 ? ? -177.47 -49.18 261 18 ARG P 5 ? ? -159.86 -37.23 262 18 ARG P 6 ? ? -31.00 -31.22 263 18 ASN P 7 ? ? -55.71 -94.15 264 18 TYR P 21 ? ? -61.05 14.19 265 18 ASN P 23 C ? -165.13 60.94 266 18 PRO P 26 ? ? -63.73 91.12 267 18 SER P 27 ? ? -41.22 168.74 268 18 ILE P 40 ? ? -107.01 -165.27 269 18 VAL P 42 ? ? -24.36 -75.71 270 18 ILE P 60 ? ? -13.37 -68.98 271 19 ARG P 2 ? ? -51.31 85.37 272 19 LYS P 4 ? ? -177.25 -73.47 273 19 ARG P 6 ? ? 142.96 -25.19 274 19 ASN P 7 ? ? -64.29 -93.53 275 19 TYR P 21 ? ? -61.48 9.12 276 19 ASN P 23 C ? -155.59 66.74 277 19 PRO P 24 ? ? -68.18 87.87 278 19 PRO P 26 ? ? -64.05 86.14 279 19 SER P 27 ? ? -39.88 168.91 280 19 ILE P 40 ? ? -109.76 -162.06 281 19 VAL P 42 ? ? -26.00 -75.18 282 19 ASN P 59 ? ? -140.54 46.56 283 19 ILE P 60 ? ? -13.79 -71.05 284 19 THR P 74 ? ? 52.13 125.45 285 20 ARG P 3 ? ? -177.74 145.48 286 20 LYS P 4 ? ? -178.54 -65.69 287 20 ARG P 6 ? ? 136.21 -28.77 288 20 ASN P 7 ? ? -56.60 -84.51 289 20 TYR P 21 ? ? -59.67 12.32 290 20 ASN P 23 C ? -173.50 56.07 291 20 SER P 27 ? ? -42.17 162.51 292 20 ILE P 40 ? ? -109.26 -162.80 293 20 VAL P 42 ? ? -25.49 -75.14 294 20 ILE P 60 ? ? -13.51 -72.67 295 20 LYS P 73 ? ? -68.91 -101.87 296 20 THR P 74 ? ? 59.45 151.18 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 9 _pdbx_validate_planes.auth_comp_id DT _pdbx_validate_planes.auth_asym_id B _pdbx_validate_planes.auth_seq_id 24 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.061 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1LFU 'double helix' 1LFU 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 2 1_555 B DG 13 1_555 0.103 -0.071 -0.030 0.555 0.623 -0.271 1 A_DC2:DG27_B A 2 ? B 27 ? 19 1 1 A DG 3 1_555 B DC 12 1_555 -0.147 -0.026 -0.040 -0.631 0.701 0.950 2 A_DG3:DC26_B A 3 ? B 26 ? 19 1 1 A DC 4 1_555 B DG 11 1_555 0.146 -0.081 -0.003 0.374 -0.206 -0.170 3 A_DC4:DG25_B A 4 ? B 25 ? 19 1 1 A DA 5 1_555 B DT 10 1_555 -0.022 -0.071 -0.088 -0.902 0.583 -10.212 4 A_DA5:DT24_B A 5 ? B 24 ? 20 1 1 A DT 6 1_555 B DA 9 1_555 0.059 -0.064 0.030 0.208 0.785 -11.197 5 A_DT6:DA23_B A 6 ? B 23 ? 20 1 1 A DG 7 1_555 B DC 8 1_555 -0.250 -0.015 0.055 0.471 -0.800 2.529 6 A_DG7:DC22_B A 7 ? B 22 ? 19 1 1 A DA 8 1_555 B DT 7 1_555 0.119 -0.107 0.046 1.087 0.325 -8.403 7 A_DA8:DT21_B A 8 ? B 21 ? 20 1 1 A DT 9 1_555 B DA 6 1_555 0.053 0.001 0.006 -0.005 0.353 -17.480 8 A_DT9:DA20_B A 9 ? B 20 ? 20 1 1 A DT 10 1_555 B DA 5 1_555 0.143 -0.167 0.157 -2.938 0.465 17.161 9 A_DT10:DA19_B A 10 ? B 19 ? 20 1 1 A DG 11 1_555 B DC 4 1_555 -0.150 -0.066 -0.004 -0.065 0.105 -0.713 10 A_DG11:DC18_B A 11 ? B 18 ? 19 1 1 A DC 12 1_555 B DG 3 1_555 0.131 -0.064 -0.005 0.053 0.097 -1.064 11 A_DC12:DG17_B A 12 ? B 17 ? 19 1 1 A DC 13 1_555 B DG 2 1_555 -0.705 0.164 -0.003 0.002 0.546 -10.946 12 A_DC13:DG16_B A 13 ? B 16 ? ? ? 1 A DC 14 1_555 B DG 1 1_555 0.266 2.291 -0.006 -0.058 -0.019 -56.734 13 A_DC14:DG15_B A 14 ? B 15 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 2 1_555 B DG 13 1_555 A DG 3 1_555 B DC 12 1_555 0.100 -0.196 4.478 0.280 -40.924 32.998 3.744 -0.086 3.045 -52.724 -0.360 52.123 1 AA_DC2DG3:DC26DG27_BB A 2 ? B 27 ? A 3 ? B 26 ? 1 A DG 3 1_555 B DC 12 1_555 A DC 4 1_555 B DG 11 1_555 -0.034 0.582 2.900 0.361 4.012 40.392 0.439 0.085 2.942 5.793 -0.521 40.584 2 AA_DG3DC4:DG25DC26_BB A 3 ? B 26 ? A 4 ? B 25 ? 1 A DC 4 1_555 B DG 11 1_555 A DA 5 1_555 B DT 10 1_555 -0.851 -0.552 2.701 -3.069 17.004 39.568 -2.108 0.915 2.341 23.791 4.294 43.037 3 AA_DC4DA5:DT24DG25_BB A 4 ? B 25 ? A 5 ? B 24 ? 1 A DA 5 1_555 B DT 10 1_555 A DT 6 1_555 B DA 9 1_555 -0.316 -0.719 3.106 2.716 -1.720 36.028 -0.927 0.874 3.105 -2.774 -4.381 36.167 4 AA_DA5DT6:DA23DT24_BB A 5 ? B 24 ? A 6 ? B 23 ? 1 A DT 6 1_555 B DA 9 1_555 A DG 7 1_555 B DC 8 1_555 0.755 0.822 4.084 0.754 -15.910 32.760 3.988 -1.085 3.359 -26.356 -1.250 36.331 5 AA_DT6DG7:DC22DA23_BB A 6 ? B 23 ? A 7 ? B 22 ? 1 A DG 7 1_555 B DC 8 1_555 A DA 8 1_555 B DT 7 1_555 -0.730 0.367 3.399 2.318 -10.380 41.750 1.549 1.230 3.181 -14.288 -3.190 43.025 6 AA_DG7DA8:DT21DC22_BB A 7 ? B 22 ? A 8 ? B 21 ? 1 A DA 8 1_555 B DT 7 1_555 A DT 9 1_555 B DA 6 1_555 -0.328 -0.050 3.503 0.045 0.845 39.272 -0.182 0.493 3.501 1.258 -0.067 39.281 7 AA_DA8DT9:DA20DT21_BB A 8 ? B 21 ? A 9 ? B 20 ? 1 A DT 9 1_555 B DA 6 1_555 A DT 10 1_555 B DA 5 1_555 1.652 -0.399 3.467 -2.590 15.920 34.956 -2.639 -2.842 2.899 24.928 4.055 38.392 8 AA_DT9DT10:DA19DA20_BB A 9 ? B 20 ? A 10 ? B 19 ? 1 A DT 10 1_555 B DA 5 1_555 A DG 11 1_555 B DC 4 1_555 -1.195 -0.633 3.152 -1.660 -3.141 27.756 -0.576 2.083 3.266 -6.513 3.443 27.978 9 AA_DT10DG11:DC18DA19_BB A 10 ? B 19 ? A 11 ? B 18 ? 1 A DG 11 1_555 B DC 4 1_555 A DC 12 1_555 B DG 3 1_555 -0.308 -0.280 3.783 -0.216 -18.520 40.146 1.691 0.386 3.576 -25.409 0.296 44.052 10 AA_DG11DC12:DG17DC18_BB A 11 ? B 18 ? A 12 ? B 17 ? 1 A DC 12 1_555 B DG 3 1_555 A DC 13 1_555 B DG 2 1_555 -0.683 -0.411 3.076 0.827 15.094 28.839 -3.147 1.354 2.534 28.008 -1.535 32.486 11 AA_DC12DC13:DG16DG17_BB A 12 ? B 17 ? A 13 ? B 16 ? 1 A DC 13 1_555 B DG 2 1_555 A DC 14 1_555 B DG 1 1_555 -1.783 1.183 3.358 -1.763 -29.451 32.292 4.225 2.250 1.812 -43.360 2.596 43.474 12 AA_DC13DC14:DG15DG16_BB A 13 ? B 16 ? A 14 ? B 15 ? #