data_1LU3 # _entry.id 1LU3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1LU3 pdb_00001lu3 10.2210/pdb1lu3/pdb RCSB RCSB016269 ? ? WWPDB D_1000016269 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-06-26 2 'Structure model' 1 1 2008-04-28 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-07-18 5 'Structure model' 1 4 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' em_image_scans 2 4 'Structure model' em_software 3 5 'Structure model' chem_comp_atom 4 5 'Structure model' chem_comp_bond 5 5 'Structure model' database_2 6 5 'Structure model' em_3d_fitting_list 7 5 'Structure model' pdbx_initial_refinement_model 8 5 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_em_software.image_processing_id' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_em_3d_fitting_list.accession_code' 5 5 'Structure model' '_em_3d_fitting_list.initial_refinement_model_id' 6 5 'Structure model' '_em_3d_fitting_list.source_name' 7 5 'Structure model' '_em_3d_fitting_list.type' 8 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1LU3 _pdbx_database_status.recvd_initial_deposition_date 2002-05-21 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1LS2 ;1ls2 is Fitting of EF-Tu and tRNA in the low resolution cryo-EM map of an EF-Tu ternary complex (GDP and Kirromycin) bound to E.coli 70S ribosome ; unspecified PDB 1EFC '1efc is Intact Elongation Factor from E.coli' unspecified PDB 1TTT '1ttt is Phe-tRNA, Elongation Factor EF-Tu: GDPNP Ternary Complex' unspecified PDB 1EXM '1exm is Crystal Structure of Thermus Thermophilus Elongation Factor Tu(EF-Tu) in complex with the GTP Analog GPPNHP' unspecified EMDB EMD-1045 . 'associated EM volume' # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Valle, M.' 1 'Sengupta, J.' 2 'Swami, N.K.' 3 'Grassucci, R.A.' 4 'Burkhardt, N.' 5 'Nierhaus, K.H.' 6 'Agrawal, R.K.' 7 'Frank, J.' 8 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process.' 'EMBO J.' 21 3557 3567 2002 EMJODG UK 0261-4189 0897 ? 12093756 10.1093/emboj/cdf326 1 'Crystal structure of intact elongation factor EF-Tu from E.coli in GDP conformation at 2.05A resolution' J.Mol.Biol. 285 1245 1256 1999 JMOBAK UK 0022-2836 0070 ? ? ? 2 'Crystal structure of the ternary complex of the Phe-tRNAPhe, EF-Tu, and a GTP analog' Science 270 1464 1472 1995 SCIEAS US 0036-8075 0038 ? ? ? 3 'Visualization of elongation factor Tu on E.coli ribosome' Nature 389 403 406 1997 NATUAS UK 0028-0836 0006 ? ? ? 4 'The crystal structure of elongation factor EF-Tu from Thermus aquaticus in the GTP conformation' Structure 1 35 50 1993 STRUE6 UK 0969-2126 2005 ? ? ? 5 'Helix unwinding in the effector region of elongation factor EF-Tu-GDP' Structure 4 1141 1151 1996 STRUE6 UK 0969-2126 2005 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Valle, M.' 1 ? primary 'Sengupta, J.' 2 ? primary 'Swami, N.K.' 3 ? primary 'Grassucci, R.A.' 4 ? primary 'Burkhardt, N.' 5 ? primary 'Nierhaus, K.H.' 6 ? primary 'Agrawal, R.K.' 7 ? primary 'Frank, J.' 8 ? 1 'Song, H.' 9 ? 1 'Parsons, M.R.' 10 ? 1 'Rowsell, S.' 11 ? 1 'Leonard, G.' 12 ? 1 'Phillips, S.E.' 13 ? 2 'Nissen, P.' 14 ? 2 'Kjeldgaard, M.' 15 ? 2 'Thirup, S.' 16 ? 2 'Polekhina, G.' 17 ? 2 'Reshetnikova, L.' 18 ? 2 'Clark, B.F.C.' 19 ? 2 'Nyborg, J.' 20 ? 3 'Stark, H.' 21 ? 3 'Rodnina, M.V.' 22 ? 3 'Rinke-Appel, J.' 23 ? 3 'Brimacombe, R.' 24 ? 3 'Wintermeyer, W.' 25 ? 3 'van Heel, M.' 26 ? 4 'Kjeldgaard, M.' 27 ? 4 'Nissen, P.' 28 ? 4 'Thirup, S.' 29 ? 4 'Nyborg, J.' 30 ? 5 'Polekhina, G.' 31 ? 5 'Thirup, S.' 32 ? 5 'Kjeldgaard, M.' 33 ? 5 'Nissen, P.' 34 ? 5 'Lippmann, C.' 35 ? 5 'Nyborg, J.' 36 ? # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description 'PHENYLALANINE TRANSFER RNA' _entity.formula_weight 5466.326 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'anticodon loop region' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'GCCAGACUGAAGA(PSU)CUG' _entity_poly.pdbx_seq_one_letter_code_can GCCAGACUGAAGAUCUG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 C n 1 4 A n 1 5 G n 1 6 A n 1 7 C n 1 8 U n 1 9 G n 1 10 A n 1 11 A n 1 12 G n 1 13 A n 1 14 PSU n 1 15 C n 1 16 U n 1 17 G n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ;baker's yeast ; _entity_src_nat.pdbx_organism_scientific 'Saccharomyces cerevisiae' _entity_src_nat.pdbx_ncbi_taxonomy_id 4932 _entity_src_nat.genus Saccharomyces _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 PSU 'RNA linking' n "PSEUDOURIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 26 26 G G A . n A 1 2 C 2 27 27 C C A . n A 1 3 C 3 28 28 C C A . n A 1 4 A 4 29 29 A A A . n A 1 5 G 5 30 30 G G A . n A 1 6 A 6 31 31 A A A . n A 1 7 C 7 32 32 C C A . n A 1 8 U 8 33 33 U U A . n A 1 9 G 9 34 34 G G A . n A 1 10 A 10 35 35 A A A . n A 1 11 A 11 36 36 A A A . n A 1 12 G 12 37 37 G G A . n A 1 13 A 13 38 38 A A A . n A 1 14 PSU 14 39 39 PSU PSU A . n A 1 15 C 15 40 40 C C A . n A 1 16 U 16 41 41 U U A . n A 1 17 G 17 42 42 G G A . n # _exptl.entry_id 1LU3 _exptl.method 'ELECTRON MICROSCOPY' _exptl.crystals_number ? # _refine.entry_id 1LU3 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_work ? _refine.ls_d_res_high 16.8 _refine.ls_d_res_low ? _refine.ls_number_reflns_obs ? _refine.ls_percent_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_phase_error ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 365 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 365 _refine_hist.d_res_high 16.8 _refine_hist.d_res_low . # _database_PDB_matrix.entry_id 1LU3 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1LU3 _struct.title ;Separate Fitting of the Anticodon Loop Region of tRNA (nucleotide 26-42) in the Low Resolution Cryo-EM Map of an EF-Tu Ternary Complex (GDP and Kirromycin) Bound to E. coli 70S Ribosome ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1LU3 _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'tRNA, ternary complex, cryo-EM, 70S E.coli ribosome, conformational change, RNA' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1LU3 _struct_ref.pdbx_db_accession 1LU3 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1LU3 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 17 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1LU3 _struct_ref_seq.db_align_beg 26 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 42 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 26 _struct_ref_seq.pdbx_auth_seq_align_end 42 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A A 13 "O3'" ? ? ? 1_555 A PSU 14 P ? ? A A 38 A PSU 39 1_555 ? ? ? ? ? ? ? 1.599 ? ? covale2 covale both ? A PSU 14 "O3'" ? ? ? 1_555 A C 15 P ? ? A PSU 39 A C 40 1_555 ? ? ? ? ? ? ? 1.600 ? ? hydrog1 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 17 N1 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 17 O6 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 17 N2 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 16 N3 ? ? A A 29 A U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 16 O4 ? ? A A 29 A U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 15 N3 ? ? A G 30 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 15 O2 ? ? A G 30 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 15 N4 ? ? A G 30 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A A 6 N1 ? ? ? 1_555 A PSU 14 N3 ? ? A A 31 A PSU 39 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog10 hydrog ? ? A A 6 N6 ? ? ? 1_555 A PSU 14 O2 ? ? A A 31 A PSU 39 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 N3 A G 26 ? ? C4 A G 26 ? ? 1.440 1.350 0.090 0.007 N 2 1 C4 A G 26 ? ? C5 A G 26 ? ? 1.332 1.379 -0.047 0.007 N 3 1 C5 A G 26 ? ? N7 A G 26 ? ? 1.437 1.388 0.049 0.006 N 4 1 N7 A G 26 ? ? C8 A G 26 ? ? 1.262 1.305 -0.043 0.006 N 5 1 C8 A G 26 ? ? N9 A G 26 ? ? 1.303 1.374 -0.071 0.007 N 6 1 N9 A G 26 ? ? C4 A G 26 ? ? 1.309 1.375 -0.066 0.008 N 7 1 C2 A C 27 ? ? N3 A C 27 ? ? 1.445 1.353 0.092 0.008 N 8 1 N3 A C 27 ? ? C4 A C 27 ? ? 1.271 1.335 -0.064 0.007 N 9 1 C4 A C 27 ? ? C5 A C 27 ? ? 1.475 1.425 0.050 0.008 N 10 1 C2 A C 28 ? ? N3 A C 28 ? ? 1.443 1.353 0.090 0.008 N 11 1 N3 A C 28 ? ? C4 A C 28 ? ? 1.270 1.335 -0.065 0.007 N 12 1 C4 A C 28 ? ? C5 A C 28 ? ? 1.475 1.425 0.050 0.008 N 13 1 C5 A A 29 ? ? N7 A A 29 ? ? 1.340 1.388 -0.048 0.006 N 14 1 N7 A A 29 ? ? C8 A A 29 ? ? 1.267 1.311 -0.044 0.007 N 15 1 C8 A A 29 ? ? N9 A A 29 ? ? 1.306 1.373 -0.067 0.008 N 16 1 N3 A G 30 ? ? C4 A G 30 ? ? 1.440 1.350 0.090 0.007 N 17 1 C4 A G 30 ? ? C5 A G 30 ? ? 1.332 1.379 -0.047 0.007 N 18 1 C5 A G 30 ? ? N7 A G 30 ? ? 1.436 1.388 0.048 0.006 N 19 1 N7 A G 30 ? ? C8 A G 30 ? ? 1.262 1.305 -0.043 0.006 N 20 1 C8 A G 30 ? ? N9 A G 30 ? ? 1.303 1.374 -0.071 0.007 N 21 1 N9 A G 30 ? ? C4 A G 30 ? ? 1.309 1.375 -0.066 0.008 N 22 1 C5 A A 31 ? ? N7 A A 31 ? ? 1.340 1.388 -0.048 0.006 N 23 1 N7 A A 31 ? ? C8 A A 31 ? ? 1.268 1.311 -0.043 0.007 N 24 1 C8 A A 31 ? ? N9 A A 31 ? ? 1.308 1.373 -0.065 0.008 N 25 1 C2 A C 32 ? ? N3 A C 32 ? ? 1.445 1.353 0.092 0.008 N 26 1 N3 A C 32 ? ? C4 A C 32 ? ? 1.270 1.335 -0.065 0.007 N 27 1 C4 A C 32 ? ? C5 A C 32 ? ? 1.475 1.425 0.050 0.008 N 28 1 N3 A G 34 ? ? C4 A G 34 ? ? 1.441 1.350 0.091 0.007 N 29 1 C4 A G 34 ? ? C5 A G 34 ? ? 1.331 1.379 -0.048 0.007 N 30 1 C5 A G 34 ? ? N7 A G 34 ? ? 1.435 1.388 0.047 0.006 N 31 1 N7 A G 34 ? ? C8 A G 34 ? ? 1.262 1.305 -0.043 0.006 N 32 1 C8 A G 34 ? ? N9 A G 34 ? ? 1.302 1.374 -0.072 0.007 N 33 1 N9 A G 34 ? ? C4 A G 34 ? ? 1.310 1.375 -0.065 0.008 N 34 1 C5 A A 35 ? ? N7 A A 35 ? ? 1.338 1.388 -0.050 0.006 N 35 1 N7 A A 35 ? ? C8 A A 35 ? ? 1.267 1.311 -0.044 0.007 N 36 1 C8 A A 35 ? ? N9 A A 35 ? ? 1.307 1.373 -0.066 0.008 N 37 1 C5 A A 36 ? ? N7 A A 36 ? ? 1.338 1.388 -0.050 0.006 N 38 1 N7 A A 36 ? ? C8 A A 36 ? ? 1.268 1.311 -0.043 0.007 N 39 1 C8 A A 36 ? ? N9 A A 36 ? ? 1.308 1.373 -0.065 0.008 N 40 1 C2 A G 37 ? ? N3 A G 37 ? ? 1.273 1.323 -0.050 0.008 N 41 1 N3 A G 37 ? ? C4 A G 37 ? ? 1.439 1.350 0.089 0.007 N 42 1 C4 A G 37 ? ? C5 A G 37 ? ? 1.332 1.379 -0.047 0.007 N 43 1 C5 A G 37 ? ? N7 A G 37 ? ? 1.436 1.388 0.048 0.006 N 44 1 N7 A G 37 ? ? C8 A G 37 ? ? 1.261 1.305 -0.044 0.006 N 45 1 C8 A G 37 ? ? N9 A G 37 ? ? 1.302 1.374 -0.072 0.007 N 46 1 N9 A G 37 ? ? C4 A G 37 ? ? 1.310 1.375 -0.065 0.008 N 47 1 C5 A A 38 ? ? N7 A A 38 ? ? 1.340 1.388 -0.048 0.006 N 48 1 N7 A A 38 ? ? C8 A A 38 ? ? 1.269 1.311 -0.042 0.007 N 49 1 C8 A A 38 ? ? N9 A A 38 ? ? 1.308 1.373 -0.065 0.008 N 50 1 C2 A C 40 ? ? N3 A C 40 ? ? 1.445 1.353 0.092 0.008 N 51 1 N3 A C 40 ? ? C4 A C 40 ? ? 1.271 1.335 -0.064 0.007 N 52 1 C4 A C 40 ? ? C5 A C 40 ? ? 1.474 1.425 0.049 0.008 N 53 1 N3 A G 42 ? ? C4 A G 42 ? ? 1.442 1.350 0.092 0.007 N 54 1 C4 A G 42 ? ? C5 A G 42 ? ? 1.332 1.379 -0.047 0.007 N 55 1 C5 A G 42 ? ? N7 A G 42 ? ? 1.437 1.388 0.049 0.006 N 56 1 N7 A G 42 ? ? C8 A G 42 ? ? 1.261 1.305 -0.044 0.006 N 57 1 C8 A G 42 ? ? N9 A G 42 ? ? 1.302 1.374 -0.072 0.007 N 58 1 N9 A G 42 ? ? C4 A G 42 ? ? 1.309 1.375 -0.066 0.008 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 OP1 A G 26 ? ? P A G 26 ? ? OP2 A G 26 ? ? 109.39 119.60 -10.21 1.50 N 2 1 C2 A G 26 ? ? N3 A G 26 ? ? C4 A G 26 ? ? 120.25 111.90 8.35 0.50 N 3 1 N3 A G 26 ? ? C4 A G 26 ? ? C5 A G 26 ? ? 119.09 128.60 -9.51 0.50 N 4 1 C5 A G 26 ? ? C6 A G 26 ? ? N1 A G 26 ? ? 115.09 111.50 3.59 0.50 N 5 1 C4 A G 26 ? ? C5 A G 26 ? ? N7 A G 26 ? ? 101.17 110.80 -9.63 0.40 N 6 1 C5 A G 26 ? ? N7 A G 26 ? ? C8 A G 26 ? ? 109.49 104.30 5.19 0.50 N 7 1 N7 A G 26 ? ? C8 A G 26 ? ? N9 A G 26 ? ? 109.56 113.10 -3.54 0.50 N 8 1 N9 A G 26 ? ? C4 A G 26 ? ? C5 A G 26 ? ? 111.32 105.40 5.92 0.40 N 9 1 C6 A G 26 ? ? C5 A G 26 ? ? N7 A G 26 ? ? 138.28 130.40 7.88 0.60 N 10 1 N1 A G 26 ? ? C6 A G 26 ? ? O6 A G 26 ? ? 124.23 119.90 4.33 0.60 N 11 1 C5 A G 26 ? ? C6 A G 26 ? ? O6 A G 26 ? ? 120.68 128.60 -7.92 0.60 N 12 1 OP1 A C 27 ? ? P A C 27 ? ? OP2 A C 27 ? ? 109.22 119.60 -10.38 1.50 N 13 1 N3 A C 27 ? ? C4 A C 27 ? ? C5 A C 27 ? ? 117.70 121.90 -4.20 0.40 N 14 1 C4 A C 27 ? ? C5 A C 27 ? ? C6 A C 27 ? ? 120.46 117.40 3.06 0.50 N 15 1 N3 A C 27 ? ? C2 A C 27 ? ? O2 A C 27 ? ? 117.69 121.90 -4.21 0.70 N 16 1 N3 A C 27 ? ? C4 A C 27 ? ? N4 A C 27 ? ? 123.02 118.00 5.02 0.70 N 17 1 OP1 A C 28 ? ? P A C 28 ? ? OP2 A C 28 ? ? 109.48 119.60 -10.12 1.50 N 18 1 N3 A C 28 ? ? C4 A C 28 ? ? C5 A C 28 ? ? 117.64 121.90 -4.26 0.40 N 19 1 C4 A C 28 ? ? C5 A C 28 ? ? C6 A C 28 ? ? 120.44 117.40 3.04 0.50 N 20 1 N3 A C 28 ? ? C4 A C 28 ? ? N4 A C 28 ? ? 122.98 118.00 4.98 0.70 N 21 1 OP1 A A 29 ? ? P A A 29 ? ? OP2 A A 29 ? ? 109.35 119.60 -10.25 1.50 N 22 1 N1 A A 29 ? ? C2 A A 29 ? ? N3 A A 29 ? ? 122.63 129.30 -6.67 0.50 N 23 1 C2 A A 29 ? ? N3 A A 29 ? ? C4 A A 29 ? ? 117.85 110.60 7.25 0.50 N 24 1 N3 A A 29 ? ? C4 A A 29 ? ? C5 A A 29 ? ? 119.86 126.80 -6.94 0.70 N 25 1 C4 A A 29 ? ? C5 A A 29 ? ? C6 A A 29 ? ? 122.35 117.00 5.35 0.50 N 26 1 C4 A A 29 ? ? C5 A A 29 ? ? N7 A A 29 ? ? 105.51 110.70 -5.19 0.50 N 27 1 C5 A A 29 ? ? N7 A A 29 ? ? C8 A A 29 ? ? 109.88 103.90 5.98 0.50 N 28 1 N3 A A 29 ? ? C4 A A 29 ? ? N9 A A 29 ? ? 134.01 127.40 6.61 0.80 N 29 1 N1 A A 29 ? ? C6 A A 29 ? ? N6 A A 29 ? ? 122.99 118.60 4.39 0.60 N 30 1 OP1 A G 30 ? ? P A G 30 ? ? OP2 A G 30 ? ? 109.47 119.60 -10.13 1.50 N 31 1 C2 A G 30 ? ? N3 A G 30 ? ? C4 A G 30 ? ? 120.33 111.90 8.43 0.50 N 32 1 N3 A G 30 ? ? C4 A G 30 ? ? C5 A G 30 ? ? 118.92 128.60 -9.68 0.50 N 33 1 C5 A G 30 ? ? C6 A G 30 ? ? N1 A G 30 ? ? 115.22 111.50 3.72 0.50 N 34 1 C4 A G 30 ? ? C5 A G 30 ? ? N7 A G 30 ? ? 101.27 110.80 -9.53 0.40 N 35 1 C5 A G 30 ? ? N7 A G 30 ? ? C8 A G 30 ? ? 109.42 104.30 5.12 0.50 N 36 1 N7 A G 30 ? ? C8 A G 30 ? ? N9 A G 30 ? ? 109.60 113.10 -3.50 0.50 N 37 1 N9 A G 30 ? ? C4 A G 30 ? ? C5 A G 30 ? ? 111.26 105.40 5.86 0.40 N 38 1 N3 A G 30 ? ? C4 A G 30 ? ? N9 A G 30 ? ? 129.83 126.00 3.83 0.60 N 39 1 C6 A G 30 ? ? C5 A G 30 ? ? N7 A G 30 ? ? 138.10 130.40 7.70 0.60 N 40 1 N1 A G 30 ? ? C6 A G 30 ? ? O6 A G 30 ? ? 124.32 119.90 4.42 0.60 N 41 1 C5 A G 30 ? ? C6 A G 30 ? ? O6 A G 30 ? ? 120.46 128.60 -8.14 0.60 N 42 1 OP1 A A 31 ? ? P A A 31 ? ? OP2 A A 31 ? ? 109.50 119.60 -10.10 1.50 N 43 1 N1 A A 31 ? ? C2 A A 31 ? ? N3 A A 31 ? ? 122.66 129.30 -6.64 0.50 N 44 1 C2 A A 31 ? ? N3 A A 31 ? ? C4 A A 31 ? ? 117.83 110.60 7.23 0.50 N 45 1 N3 A A 31 ? ? C4 A A 31 ? ? C5 A A 31 ? ? 119.88 126.80 -6.92 0.70 N 46 1 C4 A A 31 ? ? C5 A A 31 ? ? C6 A A 31 ? ? 122.27 117.00 5.27 0.50 N 47 1 C4 A A 31 ? ? C5 A A 31 ? ? N7 A A 31 ? ? 105.51 110.70 -5.19 0.50 N 48 1 C5 A A 31 ? ? N7 A A 31 ? ? C8 A A 31 ? ? 109.94 103.90 6.04 0.50 N 49 1 N3 A A 31 ? ? C4 A A 31 ? ? N9 A A 31 ? ? 133.95 127.40 6.55 0.80 N 50 1 N1 A A 31 ? ? C6 A A 31 ? ? N6 A A 31 ? ? 122.84 118.60 4.24 0.60 N 51 1 OP1 A C 32 ? ? P A C 32 ? ? OP2 A C 32 ? ? 109.55 119.60 -10.05 1.50 N 52 1 N3 A C 32 ? ? C4 A C 32 ? ? C5 A C 32 ? ? 117.48 121.90 -4.42 0.40 N 53 1 C4 A C 32 ? ? C5 A C 32 ? ? C6 A C 32 ? ? 120.66 117.40 3.26 0.50 N 54 1 N1 A C 32 ? ? C2 A C 32 ? ? O2 A C 32 ? ? 122.51 118.90 3.61 0.60 N 55 1 N3 A C 32 ? ? C4 A C 32 ? ? N4 A C 32 ? ? 122.90 118.00 4.90 0.70 N 56 1 OP1 A U 33 ? ? P A U 33 ? ? OP2 A U 33 ? ? 109.40 119.60 -10.20 1.50 N 57 1 N1 A U 33 ? ? C2 A U 33 ? ? N3 A U 33 ? ? 118.70 114.90 3.80 0.60 N 58 1 C2 A U 33 ? ? N3 A U 33 ? ? C4 A U 33 ? ? 122.13 127.00 -4.87 0.60 N 59 1 C5 A U 33 ? ? C4 A U 33 ? ? O4 A U 33 ? ? 119.45 125.90 -6.45 0.60 N 60 1 OP1 A G 34 ? ? P A G 34 ? ? OP2 A G 34 ? ? 109.46 119.60 -10.14 1.50 N 61 1 C2 A G 34 ? ? N3 A G 34 ? ? C4 A G 34 ? ? 120.31 111.90 8.41 0.50 N 62 1 N3 A G 34 ? ? C4 A G 34 ? ? C5 A G 34 ? ? 118.95 128.60 -9.65 0.50 N 63 1 C5 A G 34 ? ? C6 A G 34 ? ? N1 A G 34 ? ? 115.37 111.50 3.87 0.50 N 64 1 C4 A G 34 ? ? C5 A G 34 ? ? N7 A G 34 ? ? 101.19 110.80 -9.61 0.40 N 65 1 C5 A G 34 ? ? N7 A G 34 ? ? C8 A G 34 ? ? 109.47 104.30 5.17 0.50 N 66 1 N7 A G 34 ? ? C8 A G 34 ? ? N9 A G 34 ? ? 109.63 113.10 -3.47 0.50 N 67 1 N9 A G 34 ? ? C4 A G 34 ? ? C5 A G 34 ? ? 111.36 105.40 5.96 0.40 N 68 1 N3 A G 34 ? ? C4 A G 34 ? ? N9 A G 34 ? ? 129.69 126.00 3.69 0.60 N 69 1 C6 A G 34 ? ? C5 A G 34 ? ? N7 A G 34 ? ? 138.17 130.40 7.77 0.60 N 70 1 N1 A G 34 ? ? C6 A G 34 ? ? O6 A G 34 ? ? 124.32 119.90 4.42 0.60 N 71 1 C5 A G 34 ? ? C6 A G 34 ? ? O6 A G 34 ? ? 120.30 128.60 -8.30 0.60 N 72 1 OP1 A A 35 ? ? P A A 35 ? ? OP2 A A 35 ? ? 109.40 119.60 -10.20 1.50 N 73 1 N1 A A 35 ? ? C2 A A 35 ? ? N3 A A 35 ? ? 122.64 129.30 -6.66 0.50 N 74 1 C2 A A 35 ? ? N3 A A 35 ? ? C4 A A 35 ? ? 118.02 110.60 7.42 0.50 N 75 1 N3 A A 35 ? ? C4 A A 35 ? ? C5 A A 35 ? ? 119.58 126.80 -7.22 0.70 N 76 1 C4 A A 35 ? ? C5 A A 35 ? ? C6 A A 35 ? ? 122.50 117.00 5.50 0.50 N 77 1 C4 A A 35 ? ? C5 A A 35 ? ? N7 A A 35 ? ? 105.41 110.70 -5.29 0.50 N 78 1 C5 A A 35 ? ? N7 A A 35 ? ? C8 A A 35 ? ? 110.05 103.90 6.15 0.50 N 79 1 N3 A A 35 ? ? C4 A A 35 ? ? N9 A A 35 ? ? 134.15 127.40 6.75 0.80 N 80 1 N1 A A 35 ? ? C6 A A 35 ? ? N6 A A 35 ? ? 122.86 118.60 4.26 0.60 N 81 1 OP1 A A 36 ? ? P A A 36 ? ? OP2 A A 36 ? ? 109.17 119.60 -10.43 1.50 N 82 1 N1 A A 36 ? ? C2 A A 36 ? ? N3 A A 36 ? ? 122.57 129.30 -6.73 0.50 N 83 1 C2 A A 36 ? ? N3 A A 36 ? ? C4 A A 36 ? ? 117.81 110.60 7.21 0.50 N 84 1 N3 A A 36 ? ? C4 A A 36 ? ? C5 A A 36 ? ? 120.01 126.80 -6.79 0.70 N 85 1 C4 A A 36 ? ? C5 A A 36 ? ? C6 A A 36 ? ? 122.21 117.00 5.21 0.50 N 86 1 C4 A A 36 ? ? C5 A A 36 ? ? N7 A A 36 ? ? 105.45 110.70 -5.25 0.50 N 87 1 C5 A A 36 ? ? N7 A A 36 ? ? C8 A A 36 ? ? 110.00 103.90 6.10 0.50 N 88 1 N3 A A 36 ? ? C4 A A 36 ? ? N9 A A 36 ? ? 133.75 127.40 6.35 0.80 N 89 1 N1 A A 36 ? ? C6 A A 36 ? ? N6 A A 36 ? ? 122.71 118.60 4.11 0.60 N 90 1 OP1 A G 37 ? ? P A G 37 ? ? OP2 A G 37 ? ? 109.24 119.60 -10.36 1.50 N 91 1 C2 A G 37 ? ? N3 A G 37 ? ? C4 A G 37 ? ? 120.30 111.90 8.40 0.50 N 92 1 N3 A G 37 ? ? C4 A G 37 ? ? C5 A G 37 ? ? 119.29 128.60 -9.31 0.50 N 93 1 C5 A G 37 ? ? C6 A G 37 ? ? N1 A G 37 ? ? 115.23 111.50 3.73 0.50 N 94 1 C4 A G 37 ? ? C5 A G 37 ? ? N7 A G 37 ? ? 101.13 110.80 -9.67 0.40 N 95 1 C5 A G 37 ? ? N7 A G 37 ? ? C8 A G 37 ? ? 109.57 104.30 5.27 0.50 N 96 1 N7 A G 37 ? ? C8 A G 37 ? ? N9 A G 37 ? ? 109.52 113.10 -3.58 0.50 N 97 1 N9 A G 37 ? ? C4 A G 37 ? ? C5 A G 37 ? ? 111.33 105.40 5.93 0.40 N 98 1 C6 A G 37 ? ? C5 A G 37 ? ? N7 A G 37 ? ? 138.55 130.40 8.15 0.60 N 99 1 N1 A G 37 ? ? C6 A G 37 ? ? O6 A G 37 ? ? 123.83 119.90 3.93 0.60 N 100 1 C5 A G 37 ? ? C6 A G 37 ? ? O6 A G 37 ? ? 120.94 128.60 -7.66 0.60 N 101 1 OP1 A A 38 ? ? P A A 38 ? ? OP2 A A 38 ? ? 109.43 119.60 -10.17 1.50 N 102 1 N1 A A 38 ? ? C2 A A 38 ? ? N3 A A 38 ? ? 122.78 129.30 -6.52 0.50 N 103 1 C2 A A 38 ? ? N3 A A 38 ? ? C4 A A 38 ? ? 117.81 110.60 7.21 0.50 N 104 1 N3 A A 38 ? ? C4 A A 38 ? ? C5 A A 38 ? ? 119.87 126.80 -6.93 0.70 N 105 1 C4 A A 38 ? ? C5 A A 38 ? ? C6 A A 38 ? ? 122.33 117.00 5.33 0.50 N 106 1 C4 A A 38 ? ? C5 A A 38 ? ? N7 A A 38 ? ? 105.38 110.70 -5.32 0.50 N 107 1 C5 A A 38 ? ? N7 A A 38 ? ? C8 A A 38 ? ? 109.98 103.90 6.08 0.50 N 108 1 N3 A A 38 ? ? C4 A A 38 ? ? N9 A A 38 ? ? 133.82 127.40 6.42 0.80 N 109 1 N1 A A 38 ? ? C6 A A 38 ? ? N6 A A 38 ? ? 122.71 118.60 4.11 0.60 N 110 1 OP1 A C 40 ? ? P A C 40 ? ? OP2 A C 40 ? ? 109.28 119.60 -10.32 1.50 N 111 1 N3 A C 40 ? ? C4 A C 40 ? ? C5 A C 40 ? ? 117.75 121.90 -4.15 0.40 N 112 1 N1 A C 40 ? ? C2 A C 40 ? ? O2 A C 40 ? ? 122.53 118.90 3.63 0.60 N 113 1 N3 A C 40 ? ? C2 A C 40 ? ? O2 A C 40 ? ? 117.67 121.90 -4.23 0.70 N 114 1 N3 A C 40 ? ? C4 A C 40 ? ? N4 A C 40 ? ? 123.04 118.00 5.04 0.70 N 115 1 OP1 A U 41 ? ? P A U 41 ? ? OP2 A U 41 ? ? 109.38 119.60 -10.22 1.50 N 116 1 N1 A U 41 ? ? C2 A U 41 ? ? N3 A U 41 ? ? 118.74 114.90 3.84 0.60 N 117 1 C2 A U 41 ? ? N3 A U 41 ? ? C4 A U 41 ? ? 121.95 127.00 -5.05 0.60 N 118 1 C5 A U 41 ? ? C4 A U 41 ? ? O4 A U 41 ? ? 119.16 125.90 -6.74 0.60 N 119 1 OP1 A G 42 ? ? P A G 42 ? ? OP2 A G 42 ? ? 109.39 119.60 -10.21 1.50 N 120 1 C2 A G 42 ? ? N3 A G 42 ? ? C4 A G 42 ? ? 120.10 111.90 8.20 0.50 N 121 1 N3 A G 42 ? ? C4 A G 42 ? ? C5 A G 42 ? ? 119.16 128.60 -9.44 0.50 N 122 1 C5 A G 42 ? ? C6 A G 42 ? ? N1 A G 42 ? ? 115.10 111.50 3.60 0.50 N 123 1 C4 A G 42 ? ? C5 A G 42 ? ? N7 A G 42 ? ? 101.13 110.80 -9.67 0.40 N 124 1 C5 A G 42 ? ? N7 A G 42 ? ? C8 A G 42 ? ? 109.50 104.30 5.20 0.50 N 125 1 N7 A G 42 ? ? C8 A G 42 ? ? N9 A G 42 ? ? 109.56 113.10 -3.54 0.50 N 126 1 N9 A G 42 ? ? C4 A G 42 ? ? C5 A G 42 ? ? 111.36 105.40 5.96 0.40 N 127 1 C6 A G 42 ? ? C5 A G 42 ? ? N7 A G 42 ? ? 138.31 130.40 7.91 0.60 N 128 1 N1 A G 42 ? ? C6 A G 42 ? ? O6 A G 42 ? ? 124.19 119.90 4.29 0.60 N 129 1 C5 A G 42 ? ? C6 A G 42 ? ? O6 A G 42 ? ? 120.71 128.60 -7.89 0.60 N # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id PSU _pdbx_struct_mod_residue.label_seq_id 14 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id PSU _pdbx_struct_mod_residue.auth_seq_id 39 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id U _pdbx_struct_mod_residue.details "PSEUDOURIDINE-5'-MONOPHOSPHATE" # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 1LU3 _em_3d_fitting.ref_protocol OTHER _em_3d_fitting.ref_space ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details METHOD--Manual _em_3d_fitting.method ? # _em_3d_fitting_list.id 1 _em_3d_fitting_list.pdb_entry_id 1TTT _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.pdb_chain_id ? _em_3d_fitting_list.initial_refinement_model_id 1 _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.source_name PDB _em_3d_fitting_list.type 'experimental model' _em_3d_fitting_list.accession_code 1TTT _em_3d_fitting_list.details ? # _em_3d_reconstruction.entry_id 1LU3 _em_3d_reconstruction.id 1 _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.num_particles 7985 _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.method 'reference based alignment' _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size 2.69 _em_3d_reconstruction.resolution 16.8 _em_3d_reconstruction.magnification_calibration TMV _em_3d_reconstruction.details 'SPIDER package' _em_3d_reconstruction.resolution_method ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.algorithm ? # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name 'Hepes-KOH buffer at pH 7.5' _em_buffer.pH 7.5 _em_buffer.details 'Hepes-KOH buffer at pH 7.5' # _em_entity_assembly.id 1 _em_entity_assembly.name 'E.coli 70S ribosome-Ternary complex-GDP-Kirromycin' _em_entity_assembly.type RIBOSOME _em_entity_assembly.parent_id 0 _em_entity_assembly.synonym ? _em_entity_assembly.details 'E.coli 70S ribosome-Ternary complex-GDP-Kirromycin' _em_entity_assembly.oligomeric_details ? # _em_imaging.entry_id 1LU3 _em_imaging.id 1 _em_imaging.microscope_model 'FEI/PHILIPS EM420' _em_imaging.specimen_id 1 _em_imaging.date 2001-03-01 _em_imaging.temperature 93 _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_defocus_max 3500 _em_imaging.tilt_angle_min 0 _em_imaging.tilt_angle_max 0 _em_imaging.nominal_cs 2 _em_imaging.mode 'BRIGHT FIELD' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.nominal_magnification 50000 _em_imaging.calibrated_magnification 52000 _em_imaging.electron_source LAB6 _em_imaging.accelerating_voltage 100 _em_imaging.details ? _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.citation_id ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? # _em_vitrification.entry_id 1LU3 _em_vitrification.id 1 _em_vitrification.instrument 'HOMEMADE PLUNGER' _em_vitrification.cryogen_name ETHANE _em_vitrification.specimen_id 1 _em_vitrification.details 'Rapid-freezing in liquid ethane' _em_vitrification.citation_id ? _em_vitrification.humidity ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 1LU3 _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' # _em_single_particle_entity.entry_id 1LU3 _em_single_particle_entity.id 1 _em_single_particle_entity.point_symmetry C1 _em_single_particle_entity.image_processing_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 PSU N1 N N N 111 PSU C2 C N N 112 PSU N3 N N N 113 PSU C4 C N N 114 PSU C5 C N N 115 PSU C6 C N N 116 PSU O2 O N N 117 PSU O4 O N N 118 PSU "C1'" C N S 119 PSU "C2'" C N R 120 PSU "O2'" O N N 121 PSU "C3'" C N S 122 PSU "C4'" C N R 123 PSU "O3'" O N N 124 PSU "O4'" O N N 125 PSU "C5'" C N N 126 PSU "O5'" O N N 127 PSU P P N N 128 PSU OP1 O N N 129 PSU OP2 O N N 130 PSU OP3 O N N 131 PSU HN1 H N N 132 PSU HN3 H N N 133 PSU H6 H N N 134 PSU "H1'" H N N 135 PSU "H2'" H N N 136 PSU "HO2'" H N N 137 PSU "H3'" H N N 138 PSU "H4'" H N N 139 PSU "HO3'" H N N 140 PSU "H5'" H N N 141 PSU "H5''" H N N 142 PSU HOP2 H N N 143 PSU HOP3 H N N 144 U OP3 O N N 145 U P P N N 146 U OP1 O N N 147 U OP2 O N N 148 U "O5'" O N N 149 U "C5'" C N N 150 U "C4'" C N R 151 U "O4'" O N N 152 U "C3'" C N S 153 U "O3'" O N N 154 U "C2'" C N R 155 U "O2'" O N N 156 U "C1'" C N R 157 U N1 N N N 158 U C2 C N N 159 U O2 O N N 160 U N3 N N N 161 U C4 C N N 162 U O4 O N N 163 U C5 C N N 164 U C6 C N N 165 U HOP3 H N N 166 U HOP2 H N N 167 U "H5'" H N N 168 U "H5''" H N N 169 U "H4'" H N N 170 U "H3'" H N N 171 U "HO3'" H N N 172 U "H2'" H N N 173 U "HO2'" H N N 174 U "H1'" H N N 175 U H3 H N N 176 U H5 H N N 177 U H6 H N N 178 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 PSU N1 C2 sing N N 116 PSU N1 C6 sing N N 117 PSU N1 HN1 sing N N 118 PSU C2 N3 sing N N 119 PSU C2 O2 doub N N 120 PSU N3 C4 sing N N 121 PSU N3 HN3 sing N N 122 PSU C4 C5 sing N N 123 PSU C4 O4 doub N N 124 PSU C5 C6 doub N N 125 PSU C5 "C1'" sing N N 126 PSU C6 H6 sing N N 127 PSU "C1'" "C2'" sing N N 128 PSU "C1'" "O4'" sing N N 129 PSU "C1'" "H1'" sing N N 130 PSU "C2'" "O2'" sing N N 131 PSU "C2'" "C3'" sing N N 132 PSU "C2'" "H2'" sing N N 133 PSU "O2'" "HO2'" sing N N 134 PSU "C3'" "C4'" sing N N 135 PSU "C3'" "O3'" sing N N 136 PSU "C3'" "H3'" sing N N 137 PSU "C4'" "O4'" sing N N 138 PSU "C4'" "C5'" sing N N 139 PSU "C4'" "H4'" sing N N 140 PSU "O3'" "HO3'" sing N N 141 PSU "C5'" "O5'" sing N N 142 PSU "C5'" "H5'" sing N N 143 PSU "C5'" "H5''" sing N N 144 PSU "O5'" P sing N N 145 PSU P OP1 doub N N 146 PSU P OP2 sing N N 147 PSU P OP3 sing N N 148 PSU OP2 HOP2 sing N N 149 PSU OP3 HOP3 sing N N 150 U OP3 P sing N N 151 U OP3 HOP3 sing N N 152 U P OP1 doub N N 153 U P OP2 sing N N 154 U P "O5'" sing N N 155 U OP2 HOP2 sing N N 156 U "O5'" "C5'" sing N N 157 U "C5'" "C4'" sing N N 158 U "C5'" "H5'" sing N N 159 U "C5'" "H5''" sing N N 160 U "C4'" "O4'" sing N N 161 U "C4'" "C3'" sing N N 162 U "C4'" "H4'" sing N N 163 U "O4'" "C1'" sing N N 164 U "C3'" "O3'" sing N N 165 U "C3'" "C2'" sing N N 166 U "C3'" "H3'" sing N N 167 U "O3'" "HO3'" sing N N 168 U "C2'" "O2'" sing N N 169 U "C2'" "C1'" sing N N 170 U "C2'" "H2'" sing N N 171 U "O2'" "HO2'" sing N N 172 U "C1'" N1 sing N N 173 U "C1'" "H1'" sing N N 174 U N1 C2 sing N N 175 U N1 C6 sing N N 176 U C2 O2 doub N N 177 U C2 N3 sing N N 178 U N3 C4 sing N N 179 U N3 H3 sing N N 180 U C4 O4 doub N N 181 U C4 C5 sing N N 182 U C5 C6 doub N N 183 U C5 H5 sing N N 184 U C6 H6 sing N N 185 # _em_ctf_correction.id 1 _em_ctf_correction.details 'CTF correction of 3D-maps' _em_ctf_correction.type . # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.details ? _em_image_recording.id 1 _em_image_recording.avg_electron_dose_per_image 10 _em_image_recording.film_or_detector_model 'KODAK SO-163 FILM' _em_image_recording.imaging_id 1 _em_image_recording.detector_mode ? _em_image_recording.average_exposure_time ? _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.name _em_software.version _em_software.category _em_software.details _em_software.image_processing_id 1 O ? 'MODEL FITTING' Manual ? 2 SPIDER ? RECONSTRUCTION ? 1 # _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.concentration ? _em_specimen.vitrification_applied YES _em_specimen.staining_applied NO _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.details ? # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1LU3 'a-form double helix' 1LU3 'hairpin loop' 1LU3 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 3 1_555 A G 17 1_555 -0.155 -0.336 -1.123 18.124 -5.261 -1.690 1 A_C28:G42_A A 28 ? A 42 ? 19 1 1 A A 4 1_555 A U 16 1_555 0.424 -0.356 -0.944 -11.369 9.170 -9.272 2 A_A29:U41_A A 29 ? A 41 ? 20 1 1 A G 5 1_555 A C 15 1_555 -0.328 -0.183 -0.522 -18.822 -5.476 -9.858 3 A_G30:C40_A A 30 ? A 40 ? 19 1 1 A A 6 1_555 A PSU 14 1_555 1.382 -0.235 -0.303 -11.199 -2.069 -10.542 4 A_A31:PSU39_A A 31 ? A 39 ? 21 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 3 1_555 A G 17 1_555 A A 4 1_555 A U 16 1_555 -0.304 -1.568 4.300 -4.602 13.459 33.490 -4.843 -0.308 3.450 22.156 7.575 36.305 1 AA_C28A29:U41G42_AA A 28 ? A 42 ? A 29 ? A 41 ? 1 A A 4 1_555 A U 16 1_555 A G 5 1_555 A C 15 1_555 -0.096 -2.220 3.468 0.074 4.955 26.379 -6.060 0.225 3.007 10.737 -0.161 26.832 2 AA_A29G30:C40U41_AA A 29 ? A 41 ? A 30 ? A 40 ? 1 A G 5 1_555 A C 15 1_555 A A 6 1_555 A PSU 14 1_555 0.315 -1.474 2.922 2.339 1.905 40.349 -2.320 -0.223 2.866 2.757 -3.385 40.457 3 AA_G30A31:PSU39C40_AA A 30 ? A 40 ? A 31 ? A 39 ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1TTT # _pdbx_struct_chem_comp_diagnostics.ordinal 1 _pdbx_struct_chem_comp_diagnostics.asym_id A _pdbx_struct_chem_comp_diagnostics.auth_comp_id PSU _pdbx_struct_chem_comp_diagnostics.auth_seq_id 39 _pdbx_struct_chem_comp_diagnostics.pdb_ins_code ? _pdbx_struct_chem_comp_diagnostics.pdb_strand_id A _pdbx_struct_chem_comp_diagnostics.seq_num 14 _pdbx_struct_chem_comp_diagnostics.type GEOMETRY # _atom_sites.entry_id 1LU3 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_