data_1LUH # _entry.id 1LUH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1LUH pdb_00001luh 10.2210/pdb1luh/pdb RCSB RCSB016282 ? ? WWPDB D_1000016282 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1LUH _pdbx_database_status.recvd_initial_deposition_date 2002-05-22 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Dooley, P.D.' 1 'Zhang, M.' 2 'Korbel, G.A.' 3 'Nechev, L.V.' 4 'Harris, C.M.' 5 'Stone, M.P.' 6 'Harris, T.M.' 7 # _citation.id primary _citation.title ;NMR Determination of the Conformation of a Trimethylene Interstrand Cross-Link in an Oligodeoxynucleotide Duplex Containing a 5'-d(GpC) Motif ; _citation.journal_abbrev J.AM.CHEM.SOC. _citation.journal_volume 125 _citation.page_first 62 _citation.page_last 72 _citation.year 2003 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12515507 _citation.pdbx_database_id_DOI 10.1021/ja0207798 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Dooley, P.D.' 1 ? primary 'Zhang, M.' 2 ? primary 'Korbel, G.A.' 3 ? primary 'Nechev, L.V.' 4 ? primary 'Harris, C.M.' 5 ? primary 'Stone, M.P.' 6 ? primary 'Harris, T.M.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*TP*CP*CP*(TME)GP*CP*GP*GP*A)-3'" 2427.605 2 ? ? ? ? 2 non-polymer syn PROPANE 44.096 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DT)(DC)(DC)(DG)(DC)(DG)(DG)(DA)' _entity_poly.pdbx_seq_one_letter_code_can TCCGCGGA _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DC n 1 3 DC n 1 4 DG n 1 5 DC n 1 6 DG n 1 7 DG n 1 8 DA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Details of the synthesis are described in the journal article.' # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1LUH _struct_ref.pdbx_db_accession 1LUH _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1LUH A 1 ? 8 ? 1LUH 1 ? 8 ? 1 8 2 1 1LUH B 1 ? 8 ? 1LUH 9 ? 16 ? 9 16 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 TME non-polymer . PROPANE ? 'C3 H8' 44.096 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 '2D NOESY' 2 2 2 DQF-COSY 3 3 3 PE-COSY # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 303 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.10 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '2 mM crosslinked duplex, 10 mM sodium phosphate buffer, 0.1 M NaCl, 50 mM EDTA, pH 7.1' '99.996 % D2O' 2 '2 mM crosslinked duplex, 10 mM sodium phosphate buffer, 0.1 M NaCl, 50 mM EDTA, pH 7.1' '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AMX _pdbx_nmr_spectrometer.field_strength 500 # _pdbx_nmr_refine.entry_id 1LUH _pdbx_nmr_refine.method 'NOE-restrained molecular dynamics; simulated annealing' _pdbx_nmr_refine.details 'Further details about the structural refinement including the trimethylene chain can be found in the journal article.' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1LUH _pdbx_nmr_ensemble.conformers_calculated_total_number ? _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria ? # _pdbx_nmr_representative.entry_id 1LUH _pdbx_nmr_representative.conformer_id ? _pdbx_nmr_representative.selection_criteria 'minimized average structure' # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal Felix 95 processing 'Biosym Technologies' 1 MARDIGRAS ? 'iterative matrix relaxation' 'B.A.Borgias, T.L.L.James' 2 X-PLOR 3.1 'structure solution' A.T.Brunger 3 CORMA 3.85 'data analysis' 'J.W.Keepers, T.L.James' 4 X-PLOR 3.1 refinement A.T.Brunger 5 # _exptl.entry_id 1LUH _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.crystal_id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1LUH _struct.title ;SOLUTION NMR STRUCTURE OF SELF-COMPLIMENTARY DUPLEX 5'-D(TCCG*CGGA)2 CONTAINING A TRIMETHYLENE CROSSLINK AT THE N2 POSITION OF G* ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details 'minimized average' # _struct_keywords.entry_id 1LUH _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DNA DUPLEX, GUANINE N2-GUANINE N2 INTERSTRAND CROSSLINK, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? A DG 4 N2 ? ? ? 1_555 C TME . C3 ? ? A DG 4 B TME 1 1_555 ? ? ? ? ? ? ? 1.488 ? ? covale2 covale none ? C TME . C1 ? ? ? 1_555 B DG 4 N2 ? ? B TME 1 B DG 12 1_555 ? ? ? ? ? ? ? 1.487 ? ? hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 B DA 8 N1 ? ? A DT 1 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DT 1 O4 ? ? ? 1_555 B DA 8 N6 ? ? A DT 1 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 7 N1 ? ? A DC 2 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 7 O6 ? ? A DC 2 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 7 N2 ? ? A DC 2 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 3 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 3 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 3 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 4 B DC 13 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog10 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DG 6 N1 ? ? A DG 4 B DG 14 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog11 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 5 B DG 12 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog12 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 6 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 6 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 6 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DG 4 O6 ? ? A DG 6 B DG 12 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog16 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 7 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 7 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 7 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 1 N3 ? ? A DA 8 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 1 O4 ? ? A DA 8 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id B _struct_site.pdbx_auth_comp_id TME _struct_site.pdbx_auth_seq_id 1 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE TME B 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 DG A 4 ? DG A 4 . ? 1_555 ? 2 AC1 4 DC A 5 ? DC A 5 . ? 1_555 ? 3 AC1 4 DG B 4 ? DG B 12 . ? 1_555 ? 4 AC1 4 DC B 5 ? DC B 13 . ? 1_555 ? # _database_PDB_matrix.entry_id 1LUH _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1LUH _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT T A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DG 6 6 6 DG G A . n A 1 7 DG 7 7 7 DG G A . n A 1 8 DA 8 8 8 DA A A . n B 1 1 DT 1 9 9 DT T B . n B 1 2 DC 2 10 10 DC C B . n B 1 3 DC 3 11 11 DC C B . n B 1 4 DG 4 12 12 DG +G B . n B 1 5 DC 5 13 13 DC C B . n B 1 6 DG 6 14 14 DG G B . n B 1 7 DG 7 15 15 DG G B . n B 1 8 DA 8 16 16 DA A B . n # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id TME _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id TME _pdbx_nonpoly_scheme.auth_mon_id TME _pdbx_nonpoly_scheme.pdb_strand_id B _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-02-11 2 'Structure model' 1 1 2008-04-28 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 6 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 7 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 9 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 10 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 11 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 12 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 13 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 14 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 15 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 16 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 17 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 18 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 19 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 20 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 21 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C3'" A DT 1 ? ? "C2'" A DT 1 ? ? 1.599 1.518 0.081 0.012 N 2 1 C5 A DT 1 ? ? C7 A DT 1 ? ? 1.533 1.496 0.037 0.006 N 3 1 "C2'" A DC 2 ? ? "C1'" A DC 2 ? ? 1.588 1.519 0.069 0.010 N 4 1 N1 A DC 5 ? ? C6 A DC 5 ? ? 1.262 1.367 -0.105 0.006 N 5 1 C8 A DG 6 ? ? N9 A DG 6 ? ? 1.290 1.374 -0.084 0.007 N 6 1 "C3'" A DG 7 ? ? "C2'" A DG 7 ? ? 1.445 1.516 -0.071 0.008 N 7 1 "C3'" A DA 8 ? ? "C2'" A DA 8 ? ? 1.630 1.518 0.112 0.012 N 8 1 "C2'" A DA 8 ? ? "C1'" A DA 8 ? ? 1.630 1.519 0.111 0.010 N 9 1 "C3'" B DT 9 ? ? "C2'" B DT 9 ? ? 1.599 1.518 0.081 0.012 N 10 1 C5 B DT 9 ? ? C7 B DT 9 ? ? 1.533 1.496 0.037 0.006 N 11 1 "C2'" B DC 10 ? ? "C1'" B DC 10 ? ? 1.587 1.519 0.068 0.010 N 12 1 N1 B DC 13 ? ? C6 B DC 13 ? ? 1.263 1.367 -0.104 0.006 N 13 1 C8 B DG 14 ? ? N9 B DG 14 ? ? 1.290 1.374 -0.084 0.007 N 14 1 "C3'" B DG 15 ? ? "C2'" B DG 15 ? ? 1.445 1.516 -0.071 0.008 N 15 1 "C3'" B DA 16 ? ? "C2'" B DA 16 ? ? 1.630 1.518 0.112 0.012 N 16 1 "C2'" B DA 16 ? ? "C1'" B DA 16 ? ? 1.630 1.519 0.111 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 2 ? ? "C4'" A DC 2 ? ? "C3'" A DC 2 ? ? 109.97 106.00 3.97 0.60 N 2 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 112.66 108.30 4.36 0.30 N 3 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 112.78 108.30 4.48 0.30 N 4 1 N7 A DG 4 ? ? C8 A DG 4 ? ? N9 A DG 4 ? ? 118.20 113.10 5.10 0.50 N 5 1 C8 A DG 4 ? ? N9 A DG 4 ? ? C4 A DG 4 ? ? 103.60 106.40 -2.80 0.40 N 6 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 110.78 108.30 2.48 0.30 N 7 1 C6 A DC 5 ? ? N1 A DC 5 ? ? C2 A DC 5 ? ? 123.11 120.30 2.81 0.40 N 8 1 C6 A DC 5 ? ? N1 A DC 5 ? ? "C1'" A DC 5 ? ? 112.99 120.80 -7.81 1.20 N 9 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 111.52 108.30 3.22 0.30 N 10 1 C5 A DG 6 ? ? N7 A DG 6 ? ? C8 A DG 6 ? ? 100.56 104.30 -3.74 0.50 N 11 1 N7 A DG 6 ? ? C8 A DG 6 ? ? N9 A DG 6 ? ? 119.14 113.10 6.04 0.50 N 12 1 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 114.11 108.30 5.81 0.30 N 13 1 N7 A DG 7 ? ? C8 A DG 7 ? ? N9 A DG 7 ? ? 117.74 113.10 4.64 0.50 N 14 1 C8 A DG 7 ? ? N9 A DG 7 ? ? C4 A DG 7 ? ? 103.83 106.40 -2.57 0.40 N 15 1 N7 A DA 8 ? ? C8 A DA 8 ? ? N9 A DA 8 ? ? 117.61 113.80 3.81 0.50 N 16 1 C8 A DA 8 ? ? N9 A DA 8 ? ? C4 A DA 8 ? ? 103.22 105.80 -2.58 0.40 N 17 1 "O4'" B DC 10 ? ? "C4'" B DC 10 ? ? "C3'" B DC 10 ? ? 109.98 106.00 3.98 0.60 N 18 1 "O4'" B DC 10 ? ? "C1'" B DC 10 ? ? N1 B DC 10 ? ? 112.77 108.30 4.47 0.30 N 19 1 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 112.67 108.30 4.37 0.30 N 20 1 N7 B DG 12 ? ? C8 B DG 12 ? ? N9 B DG 12 ? ? 118.17 113.10 5.07 0.50 N 21 1 C8 B DG 12 ? ? N9 B DG 12 ? ? C4 B DG 12 ? ? 103.63 106.40 -2.77 0.40 N 22 1 "O4'" B DC 13 ? ? "C1'" B DC 13 ? ? N1 B DC 13 ? ? 110.78 108.30 2.48 0.30 N 23 1 C6 B DC 13 ? ? N1 B DC 13 ? ? C2 B DC 13 ? ? 123.09 120.30 2.79 0.40 N 24 1 C6 B DC 13 ? ? N1 B DC 13 ? ? "C1'" B DC 13 ? ? 112.95 120.80 -7.85 1.20 N 25 1 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? N9 B DG 14 ? ? 111.46 108.30 3.16 0.30 N 26 1 C5 B DG 14 ? ? N7 B DG 14 ? ? C8 B DG 14 ? ? 100.56 104.30 -3.74 0.50 N 27 1 N7 B DG 14 ? ? C8 B DG 14 ? ? N9 B DG 14 ? ? 119.19 113.10 6.09 0.50 N 28 1 "O4'" B DG 15 ? ? "C1'" B DG 15 ? ? N9 B DG 15 ? ? 114.08 108.30 5.78 0.30 N 29 1 N7 B DG 15 ? ? C8 B DG 15 ? ? N9 B DG 15 ? ? 117.79 113.10 4.69 0.50 N 30 1 C8 B DG 15 ? ? N9 B DG 15 ? ? C4 B DG 15 ? ? 103.74 106.40 -2.66 0.40 N 31 1 N7 B DA 16 ? ? C8 B DA 16 ? ? N9 B DA 16 ? ? 117.56 113.80 3.76 0.50 N 32 1 C8 B DA 16 ? ? N9 B DA 16 ? ? C4 B DA 16 ? ? 103.27 105.80 -2.53 0.40 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DC A 3 ? ? 0.060 'SIDE CHAIN' 2 1 DC B 11 ? ? 0.062 'SIDE CHAIN' # _ndb_struct_conf_na.entry_id 1LUH _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 1 1_555 B DA 8 1_555 0.102 -0.752 1.338 21.248 29.536 19.915 1 A_DT1:DA16_B A 1 ? B 16 ? 20 1 1 A DC 2 1_555 B DG 7 1_555 1.340 -0.543 0.152 18.318 21.244 6.241 2 A_DC2:DG15_B A 2 ? B 15 ? 19 1 1 A DC 3 1_555 B DG 6 1_555 0.032 0.056 -0.306 -52.815 -1.146 3.073 3 A_DC3:DG14_B A 3 ? B 14 ? 19 1 1 A DG 4 1_555 B DC 5 1_555 0.631 -0.026 -0.868 -15.073 53.576 -38.363 4 A_DG4:DC13_B A 4 ? B 13 ? ? ? 1 A DC 5 1_555 B DG 4 1_555 -0.504 -0.041 -0.908 16.107 52.672 -38.598 5 A_DC5:DG12_B A 5 ? B 12 ? ? ? 1 A DG 6 1_555 B DC 3 1_555 -0.147 -0.027 -0.433 50.652 -1.397 3.551 6 A_DG6:DC11_B A 6 ? B 11 ? 19 1 1 A DG 7 1_555 B DC 2 1_555 -1.233 -0.452 -0.031 -19.314 22.218 5.416 7 A_DG7:DC10_B A 7 ? B 10 ? 19 1 1 A DA 8 1_555 B DT 1 1_555 0.207 -0.664 1.220 -21.810 32.032 18.911 8 A_DA8:DT9_B A 8 ? B 9 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 1 1_555 B DA 8 1_555 A DC 2 1_555 B DG 7 1_555 0.053 1.246 4.037 4.991 12.287 21.738 -1.901 1.802 4.065 29.328 -11.913 25.423 1 AA_DT1DC2:DG15DA16_BB A 1 ? B 16 ? A 2 ? B 15 ? 1 A DC 2 1_555 B DG 7 1_555 A DC 3 1_555 B DG 6 1_555 -0.396 -1.428 5.746 12.000 50.244 16.352 -6.327 1.571 0.393 71.612 -17.104 54.014 2 AA_DC2DC3:DG14DG15_BB A 2 ? B 15 ? A 3 ? B 14 ? 1 A DC 3 1_555 B DG 6 1_555 A DG 4 1_555 B DC 5 1_555 -1.508 0.584 2.943 0.673 3.477 18.961 0.159 4.808 2.945 10.436 -2.020 19.286 3 AA_DC3DG4:DC13DG14_BB A 3 ? B 14 ? A 4 ? B 13 ? 1 A DG 4 1_555 B DC 5 1_555 A DC 5 1_555 B DG 4 1_555 -0.004 -0.229 3.863 0.265 9.509 15.630 -6.900 0.185 3.188 31.451 -0.876 18.282 4 AA_DG4DC5:DG12DC13_BB A 4 ? B 13 ? A 5 ? B 12 ? 1 A DC 5 1_555 B DG 4 1_555 A DG 6 1_555 B DC 3 1_555 1.530 0.582 3.088 -0.223 4.117 17.982 -0.357 -4.892 3.122 12.952 0.703 18.445 5 AA_DC5DG6:DC11DG12_BB A 5 ? B 12 ? A 6 ? B 11 ? 1 A DG 6 1_555 B DC 3 1_555 A DG 7 1_555 B DC 2 1_555 0.409 -1.451 5.673 -11.883 50.767 16.393 -6.216 -1.531 0.336 71.813 16.809 54.483 6 AA_DG6DG7:DC10DC11_BB A 6 ? B 11 ? A 7 ? B 10 ? 1 A DG 7 1_555 B DC 2 1_555 A DA 8 1_555 B DT 1 1_555 -0.065 1.241 4.036 -5.278 12.714 21.832 -1.994 -1.838 4.046 30.030 12.468 25.765 7 AA_DG7DA8:DT9DC10_BB A 7 ? B 10 ? A 8 ? B 9 ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name PROPANE _pdbx_entity_nonpoly.comp_id TME #