data_1LVA # _entry.id 1LVA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1LVA RCSB RCSB016309 WWPDB D_1000016309 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1LVA _pdbx_database_status.recvd_initial_deposition_date 2002-05-28 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Selmer, M.' 1 'Su, X.-D.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Crystal structure of an mRNA-binding fragment of Moorella thermoacetica elongation factor SelB.' 'EMBO J.' 21 4145 4153 2002 EMJODG UK 0261-4189 0897 ? 12145214 10.1093/emboj/cdf408 1 'Preparation of a crystallizable mRNA-binding fragment of Moorella thermoacetica elongation factor SelB' 'Acta Crystallogr.,Sect.D' 58 1871 1873 2002 ABCRE6 DK 0907-4449 0766 ? ? 10.1107/S090744490201380X # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Selmer, M.' 1 primary 'Su, X.D.' 2 1 'Selmer, M.' 3 1 'Wilting, R.' 4 1 'Holmlund, D.' 5 1 'Su, X.-D.' 6 # _cell.entry_id 1LVA _cell.length_a 37.841 _cell.length_b 67.006 _cell.length_c 105.357 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LVA _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Selenocysteine-specific elongation factor' 29737.555 1 ? ? 'C-terminal fragment' ? 2 non-polymer syn 'YTTRIUM ION' 88.906 2 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 4 water nat water 18.015 108 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'SelB translation factor, SelB' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GSPEKILAQIIQEHREGLDWQEAATRASLSLEETRKLLQS(MSE)AAAGQVTLLRVENDLYAISTERYQAWWQAVTRALE EFHSRYPLRPGLAREELRSRYFSRLPARVYQALLEEWSREGRLQLAANTVALAGFTPSFSETQKKLLKDLEDKYRVSRWQ PPSFKEVAGSFNLDPSELEELLHYLVREGVLVKINDEFYWHRQALGEAREVIKNLASTGPFGLAEARDALGSSRKYVLPL LEYLDQVKFTRRVGDKRVVVGN ; _entity_poly.pdbx_seq_one_letter_code_can ;GSPEKILAQIIQEHREGLDWQEAATRASLSLEETRKLLQSMAAAGQVTLLRVENDLYAISTERYQAWWQAVTRALEEFHS RYPLRPGLAREELRSRYFSRLPARVYQALLEEWSREGRLQLAANTVALAGFTPSFSETQKKLLKDLEDKYRVSRWQPPSF KEVAGSFNLDPSELEELLHYLVREGVLVKINDEFYWHRQALGEAREVIKNLASTGPFGLAEARDALGSSRKYVLPLLEYL DQVKFTRRVGDKRVVVGN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 PRO n 1 4 GLU n 1 5 LYS n 1 6 ILE n 1 7 LEU n 1 8 ALA n 1 9 GLN n 1 10 ILE n 1 11 ILE n 1 12 GLN n 1 13 GLU n 1 14 HIS n 1 15 ARG n 1 16 GLU n 1 17 GLY n 1 18 LEU n 1 19 ASP n 1 20 TRP n 1 21 GLN n 1 22 GLU n 1 23 ALA n 1 24 ALA n 1 25 THR n 1 26 ARG n 1 27 ALA n 1 28 SER n 1 29 LEU n 1 30 SER n 1 31 LEU n 1 32 GLU n 1 33 GLU n 1 34 THR n 1 35 ARG n 1 36 LYS n 1 37 LEU n 1 38 LEU n 1 39 GLN n 1 40 SER n 1 41 MSE n 1 42 ALA n 1 43 ALA n 1 44 ALA n 1 45 GLY n 1 46 GLN n 1 47 VAL n 1 48 THR n 1 49 LEU n 1 50 LEU n 1 51 ARG n 1 52 VAL n 1 53 GLU n 1 54 ASN n 1 55 ASP n 1 56 LEU n 1 57 TYR n 1 58 ALA n 1 59 ILE n 1 60 SER n 1 61 THR n 1 62 GLU n 1 63 ARG n 1 64 TYR n 1 65 GLN n 1 66 ALA n 1 67 TRP n 1 68 TRP n 1 69 GLN n 1 70 ALA n 1 71 VAL n 1 72 THR n 1 73 ARG n 1 74 ALA n 1 75 LEU n 1 76 GLU n 1 77 GLU n 1 78 PHE n 1 79 HIS n 1 80 SER n 1 81 ARG n 1 82 TYR n 1 83 PRO n 1 84 LEU n 1 85 ARG n 1 86 PRO n 1 87 GLY n 1 88 LEU n 1 89 ALA n 1 90 ARG n 1 91 GLU n 1 92 GLU n 1 93 LEU n 1 94 ARG n 1 95 SER n 1 96 ARG n 1 97 TYR n 1 98 PHE n 1 99 SER n 1 100 ARG n 1 101 LEU n 1 102 PRO n 1 103 ALA n 1 104 ARG n 1 105 VAL n 1 106 TYR n 1 107 GLN n 1 108 ALA n 1 109 LEU n 1 110 LEU n 1 111 GLU n 1 112 GLU n 1 113 TRP n 1 114 SER n 1 115 ARG n 1 116 GLU n 1 117 GLY n 1 118 ARG n 1 119 LEU n 1 120 GLN n 1 121 LEU n 1 122 ALA n 1 123 ALA n 1 124 ASN n 1 125 THR n 1 126 VAL n 1 127 ALA n 1 128 LEU n 1 129 ALA n 1 130 GLY n 1 131 PHE n 1 132 THR n 1 133 PRO n 1 134 SER n 1 135 PHE n 1 136 SER n 1 137 GLU n 1 138 THR n 1 139 GLN n 1 140 LYS n 1 141 LYS n 1 142 LEU n 1 143 LEU n 1 144 LYS n 1 145 ASP n 1 146 LEU n 1 147 GLU n 1 148 ASP n 1 149 LYS n 1 150 TYR n 1 151 ARG n 1 152 VAL n 1 153 SER n 1 154 ARG n 1 155 TRP n 1 156 GLN n 1 157 PRO n 1 158 PRO n 1 159 SER n 1 160 PHE n 1 161 LYS n 1 162 GLU n 1 163 VAL n 1 164 ALA n 1 165 GLY n 1 166 SER n 1 167 PHE n 1 168 ASN n 1 169 LEU n 1 170 ASP n 1 171 PRO n 1 172 SER n 1 173 GLU n 1 174 LEU n 1 175 GLU n 1 176 GLU n 1 177 LEU n 1 178 LEU n 1 179 HIS n 1 180 TYR n 1 181 LEU n 1 182 VAL n 1 183 ARG n 1 184 GLU n 1 185 GLY n 1 186 VAL n 1 187 LEU n 1 188 VAL n 1 189 LYS n 1 190 ILE n 1 191 ASN n 1 192 ASP n 1 193 GLU n 1 194 PHE n 1 195 TYR n 1 196 TRP n 1 197 HIS n 1 198 ARG n 1 199 GLN n 1 200 ALA n 1 201 LEU n 1 202 GLY n 1 203 GLU n 1 204 ALA n 1 205 ARG n 1 206 GLU n 1 207 VAL n 1 208 ILE n 1 209 LYS n 1 210 ASN n 1 211 LEU n 1 212 ALA n 1 213 SER n 1 214 THR n 1 215 GLY n 1 216 PRO n 1 217 PHE n 1 218 GLY n 1 219 LEU n 1 220 ALA n 1 221 GLU n 1 222 ALA n 1 223 ARG n 1 224 ASP n 1 225 ALA n 1 226 LEU n 1 227 GLY n 1 228 SER n 1 229 SER n 1 230 ARG n 1 231 LYS n 1 232 TYR n 1 233 VAL n 1 234 LEU n 1 235 PRO n 1 236 LEU n 1 237 LEU n 1 238 GLU n 1 239 TYR n 1 240 LEU n 1 241 ASP n 1 242 GLN n 1 243 VAL n 1 244 LYS n 1 245 PHE n 1 246 THR n 1 247 ARG n 1 248 ARG n 1 249 VAL n 1 250 GLY n 1 251 ASP n 1 252 LYS n 1 253 ARG n 1 254 VAL n 1 255 VAL n 1 256 VAL n 1 257 GLY n 1 258 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Moorella _entity_src_gen.pdbx_gene_src_gene 'SelB(amino acids 370-634)' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Moorella thermoacetica' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1525 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SELB_MOOTH _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GSPEKILAQIIQEHREGLDWQEAATRASLSLEETRKLLQSMAAAGQVTLLRVENDLYAISTERYQAWWQAVTRALEEFHS RYPLRPGLAREELRSRYFSRLPARVYQALLEEWSREGRLQLAANTVALAGFTPSFSETQKKLLKDLEDKYRVSRWQPPSF KEVAGSFNLDPSELEELLHYLVREGVLVKINDEFYWHRQALGEAREVIKNLASTGPFGLAEARDALGSSRKYVLPLLEYL DQVKFTRRVGDKRVVVGN ; _struct_ref.pdbx_align_begin 377 _struct_ref.pdbx_db_accession Q46455 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1LVA _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 258 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q46455 _struct_ref_seq.db_align_beg 377 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 634 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 377 _struct_ref_seq.pdbx_auth_seq_align_end 634 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 1LVA _struct_ref_seq_dif.mon_id MSE _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 41 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q46455 _struct_ref_seq_dif.db_mon_id MET _struct_ref_seq_dif.pdbx_seq_db_seq_num 417 _struct_ref_seq_dif.details 'MODIFIED RESIDUE' _struct_ref_seq_dif.pdbx_auth_seq_num 417 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 Y1 non-polymer . 'YTTRIUM ION' ? 'Y 2' 88.906 # _exptl.entry_id 1LVA _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 45.21 _exptl_crystal.density_Matthews 2.25 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.2 _exptl_crystal_grow.pdbx_details 'PEG 8000, MES-Tris, yttrium chloride, pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2001-08-21 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.7250 1.0 2 0.7255 1.0 3 0.9773 1.0 4 0.9783 1.0 5 0.9840 1.0 6 0.9050 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE BW7A' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, Hamburg' _diffrn_source.pdbx_synchrotron_beamline BW7A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.7250, 0.7255, 0.9773, 0.9783, 0.9840, 0.9050' # _reflns.entry_id 1LVA _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20 _reflns.d_resolution_high 2.12 _reflns.number_obs 15941 _reflns.number_all 15941 _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.0680000 _reflns.pdbx_netI_over_sigmaI 28.2 _reflns.B_iso_Wilson_estimate 31 _reflns.pdbx_redundancy 8.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.12 _reflns_shell.d_res_low 2.20 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.3730000 _reflns_shell.meanI_over_sigI_obs 3.1 _reflns_shell.pdbx_redundancy 7.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1546 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1LVA _refine.ls_number_reflns_obs 28510 _refine.ls_number_reflns_all 29326 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 19.24 _refine.ls_d_res_high 2.12 _refine.ls_percent_reflns_obs 97.2 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2150000 _refine.ls_R_factor_R_free 0.2580000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 2755 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 29.9 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model restrained _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1LVA _refine_analyze.Luzzati_coordinate_error_obs 0.27 _refine_analyze.Luzzati_sigma_a_obs 0.18 _refine_analyze.Luzzati_d_res_low_obs 5.0 _refine_analyze.Luzzati_coordinate_error_free 0.32 _refine_analyze.Luzzati_sigma_a_free 0.22 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2075 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 7 _refine_hist.number_atoms_solvent 108 _refine_hist.number_atoms_total 2190 _refine_hist.d_res_high 2.12 _refine_hist.d_res_low 19.24 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.2 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 20.7 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 2.12 _refine_ls_shell.d_res_low 2.25 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.2390000 _refine_ls_shell.percent_reflns_obs 93.1 _refine_ls_shell.R_factor_R_free 0.2710000 _refine_ls_shell.R_factor_R_free_error 0.013 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 434 _refine_ls_shell.number_reflns_obs 4550 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1LVA _struct.title 'Crystal structure of a C-terminal fragment of Moorella thermoacetica elongation factor SelB' _struct.pdbx_descriptor 'Selenocysteine-specific elongation factor' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1LVA _struct_keywords.pdbx_keywords TRANSLATION _struct_keywords.text 'winged-helix, translation' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 2 ? GLU A 13 ? SER A 378 GLU A 389 1 ? 12 HELX_P HELX_P2 2 TRP A 20 ? SER A 28 ? TRP A 396 SER A 404 1 ? 9 HELX_P HELX_P3 3 SER A 30 ? ALA A 44 ? SER A 406 ALA A 420 1 ? 15 HELX_P HELX_P4 4 THR A 61 ? TYR A 82 ? THR A 437 TYR A 458 1 ? 22 HELX_P HELX_P5 5 ARG A 90 ? PHE A 98 ? ARG A 466 PHE A 474 1 ? 9 HELX_P HELX_P6 6 PRO A 102 ? GLU A 116 ? PRO A 478 GLU A 492 1 ? 15 HELX_P HELX_P7 7 SER A 136 ? ARG A 154 ? SER A 512 ARG A 530 1 ? 19 HELX_P HELX_P8 8 SER A 159 ? PHE A 167 ? SER A 535 PHE A 543 1 ? 9 HELX_P HELX_P9 9 ASP A 170 ? GLU A 184 ? ASP A 546 GLU A 560 1 ? 15 HELX_P HELX_P10 10 ARG A 198 ? SER A 213 ? ARG A 574 SER A 589 1 ? 16 HELX_P HELX_P11 11 GLY A 218 ? GLY A 227 ? GLY A 594 GLY A 603 1 ? 10 HELX_P HELX_P12 12 SER A 229 ? VAL A 243 ? SER A 605 VAL A 619 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A SER 40 C ? ? ? 1_555 A MSE 41 N ? ? A SER 416 A MSE 417 1_555 ? ? ? ? ? ? ? 1.328 ? covale2 covale ? ? A MSE 41 C ? ? ? 1_555 A ALA 42 N ? ? A MSE 417 A ALA 418 1_555 ? ? ? ? ? ? ? 1.327 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 3 ? C ? 2 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 18 ? ASP A 19 ? LEU A 394 ASP A 395 A 2 ASP A 55 ? SER A 60 ? ASP A 431 SER A 436 A 3 VAL A 47 ? VAL A 52 ? VAL A 423 VAL A 428 B 1 LEU A 88 ? ALA A 89 ? LEU A 464 ALA A 465 B 2 THR A 125 ? LEU A 128 ? THR A 501 LEU A 504 B 3 LEU A 119 ? ALA A 122 ? LEU A 495 ALA A 498 C 1 LEU A 187 ? LYS A 189 ? LEU A 563 LYS A 565 C 2 TYR A 195 ? HIS A 197 ? TYR A 571 HIS A 573 D 1 THR A 246 ? VAL A 249 ? THR A 622 VAL A 625 D 2 LYS A 252 ? VAL A 255 ? LYS A 628 VAL A 631 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 18 ? N LEU A 394 O ALA A 58 ? O ALA A 434 A 2 3 O TYR A 57 ? O TYR A 433 N LEU A 50 ? N LEU A 426 B 1 2 N LEU A 88 ? N LEU A 464 O VAL A 126 ? O VAL A 502 B 2 3 O ALA A 127 ? O ALA A 503 N GLN A 120 ? N GLN A 496 C 1 2 N VAL A 188 ? N VAL A 564 O TRP A 196 ? O TRP A 572 D 1 2 N ARG A 247 ? N ARG A 623 O VAL A 254 ? O VAL A 630 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE Y1 A 743' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE Y1 A 744' AC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE SO4 A 745' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 GLU A 111 ? GLU A 487 . ? 1_555 ? 2 AC1 5 GLU A 203 ? GLU A 579 . ? 4_445 ? 3 AC1 5 GLU A 206 ? GLU A 582 . ? 4_445 ? 4 AC1 5 HOH E . ? HOH A 656 . ? 4_445 ? 5 AC1 5 HOH E . ? HOH A 685 . ? 1_555 ? 6 AC2 5 ASP A 224 ? ASP A 600 . ? 4_435 ? 7 AC2 5 ASP A 251 ? ASP A 627 . ? 1_555 ? 8 AC2 5 HOH E . ? HOH A 729 . ? 1_555 ? 9 AC2 5 HOH E . ? HOH A 732 . ? 1_555 ? 10 AC2 5 HOH E . ? HOH A 738 . ? 1_555 ? 11 AC3 4 ARG A 223 ? ARG A 599 . ? 1_555 ? 12 AC3 4 SER A 229 ? SER A 605 . ? 1_555 ? 13 AC3 4 ARG A 230 ? ARG A 606 . ? 1_555 ? 14 AC3 4 LYS A 252 ? LYS A 628 . ? 4_535 ? # _database_PDB_matrix.entry_id 1LVA _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1LVA _atom_sites.fract_transf_matrix[1][1] 0.026426 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014924 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009492 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE Y # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 377 377 GLY GLY A . n A 1 2 SER 2 378 378 SER SER A . n A 1 3 PRO 3 379 379 PRO PRO A . n A 1 4 GLU 4 380 380 GLU GLU A . n A 1 5 LYS 5 381 381 LYS ALA A . n A 1 6 ILE 6 382 382 ILE ILE A . n A 1 7 LEU 7 383 383 LEU LEU A . n A 1 8 ALA 8 384 384 ALA ALA A . n A 1 9 GLN 9 385 385 GLN GLN A . n A 1 10 ILE 10 386 386 ILE ILE A . n A 1 11 ILE 11 387 387 ILE ILE A . n A 1 12 GLN 12 388 388 GLN GLN A . n A 1 13 GLU 13 389 389 GLU GLU A . n A 1 14 HIS 14 390 390 HIS HIS A . n A 1 15 ARG 15 391 391 ARG ALA A . n A 1 16 GLU 16 392 392 GLU GLU A . n A 1 17 GLY 17 393 393 GLY GLY A . n A 1 18 LEU 18 394 394 LEU LEU A . n A 1 19 ASP 19 395 395 ASP ASP A . n A 1 20 TRP 20 396 396 TRP TRP A . n A 1 21 GLN 21 397 397 GLN GLN A . n A 1 22 GLU 22 398 398 GLU GLU A . n A 1 23 ALA 23 399 399 ALA ALA A . n A 1 24 ALA 24 400 400 ALA ALA A . n A 1 25 THR 25 401 401 THR THR A . n A 1 26 ARG 26 402 402 ARG ARG A . n A 1 27 ALA 27 403 403 ALA ALA A . n A 1 28 SER 28 404 404 SER SER A . n A 1 29 LEU 29 405 405 LEU LEU A . n A 1 30 SER 30 406 406 SER SER A . n A 1 31 LEU 31 407 407 LEU LEU A . n A 1 32 GLU 32 408 408 GLU GLU A . n A 1 33 GLU 33 409 409 GLU GLU A . n A 1 34 THR 34 410 410 THR THR A . n A 1 35 ARG 35 411 411 ARG ARG A . n A 1 36 LYS 36 412 412 LYS LYS A . n A 1 37 LEU 37 413 413 LEU LEU A . n A 1 38 LEU 38 414 414 LEU LEU A . n A 1 39 GLN 39 415 415 GLN GLN A . n A 1 40 SER 40 416 416 SER SER A . n A 1 41 MSE 41 417 417 MSE MSE A . n A 1 42 ALA 42 418 418 ALA ALA A . n A 1 43 ALA 43 419 419 ALA ALA A . n A 1 44 ALA 44 420 420 ALA ALA A . n A 1 45 GLY 45 421 421 GLY GLY A . n A 1 46 GLN 46 422 422 GLN GLN A . n A 1 47 VAL 47 423 423 VAL VAL A . n A 1 48 THR 48 424 424 THR THR A . n A 1 49 LEU 49 425 425 LEU LEU A . n A 1 50 LEU 50 426 426 LEU LEU A . n A 1 51 ARG 51 427 427 ARG ARG A . n A 1 52 VAL 52 428 428 VAL VAL A . n A 1 53 GLU 53 429 429 GLU ALA A . n A 1 54 ASN 54 430 430 ASN ASN A . n A 1 55 ASP 55 431 431 ASP ASP A . n A 1 56 LEU 56 432 432 LEU LEU A . n A 1 57 TYR 57 433 433 TYR TYR A . n A 1 58 ALA 58 434 434 ALA ALA A . n A 1 59 ILE 59 435 435 ILE ILE A . n A 1 60 SER 60 436 436 SER SER A . n A 1 61 THR 61 437 437 THR THR A . n A 1 62 GLU 62 438 438 GLU GLU A . n A 1 63 ARG 63 439 439 ARG ARG A . n A 1 64 TYR 64 440 440 TYR TYR A . n A 1 65 GLN 65 441 441 GLN GLN A . n A 1 66 ALA 66 442 442 ALA ALA A . n A 1 67 TRP 67 443 443 TRP TRP A . n A 1 68 TRP 68 444 444 TRP TRP A . n A 1 69 GLN 69 445 445 GLN GLN A . n A 1 70 ALA 70 446 446 ALA ALA A . n A 1 71 VAL 71 447 447 VAL VAL A . n A 1 72 THR 72 448 448 THR THR A . n A 1 73 ARG 73 449 449 ARG ARG A . n A 1 74 ALA 74 450 450 ALA ALA A . n A 1 75 LEU 75 451 451 LEU LEU A . n A 1 76 GLU 76 452 452 GLU GLU A . n A 1 77 GLU 77 453 453 GLU GLU A . n A 1 78 PHE 78 454 454 PHE PHE A . n A 1 79 HIS 79 455 455 HIS HIS A . n A 1 80 SER 80 456 456 SER SER A . n A 1 81 ARG 81 457 457 ARG ARG A . n A 1 82 TYR 82 458 458 TYR TYR A . n A 1 83 PRO 83 459 459 PRO PRO A . n A 1 84 LEU 84 460 460 LEU LEU A . n A 1 85 ARG 85 461 461 ARG ARG A . n A 1 86 PRO 86 462 462 PRO PRO A . n A 1 87 GLY 87 463 463 GLY GLY A . n A 1 88 LEU 88 464 464 LEU LEU A . n A 1 89 ALA 89 465 465 ALA ALA A . n A 1 90 ARG 90 466 466 ARG ARG A . n A 1 91 GLU 91 467 467 GLU GLU A . n A 1 92 GLU 92 468 468 GLU ALA A . n A 1 93 LEU 93 469 469 LEU LEU A . n A 1 94 ARG 94 470 470 ARG ARG A . n A 1 95 SER 95 471 471 SER SER A . n A 1 96 ARG 96 472 472 ARG ALA A . n A 1 97 TYR 97 473 473 TYR TYR A . n A 1 98 PHE 98 474 474 PHE PHE A . n A 1 99 SER 99 475 475 SER SER A . n A 1 100 ARG 100 476 476 ARG ARG A . n A 1 101 LEU 101 477 477 LEU LEU A . n A 1 102 PRO 102 478 478 PRO PRO A . n A 1 103 ALA 103 479 479 ALA ALA A . n A 1 104 ARG 104 480 480 ARG ARG A . n A 1 105 VAL 105 481 481 VAL VAL A . n A 1 106 TYR 106 482 482 TYR TYR A . n A 1 107 GLN 107 483 483 GLN GLN A . n A 1 108 ALA 108 484 484 ALA ALA A . n A 1 109 LEU 109 485 485 LEU LEU A . n A 1 110 LEU 110 486 486 LEU LEU A . n A 1 111 GLU 111 487 487 GLU GLU A . n A 1 112 GLU 112 488 488 GLU GLU A . n A 1 113 TRP 113 489 489 TRP TRP A . n A 1 114 SER 114 490 490 SER SER A . n A 1 115 ARG 115 491 491 ARG ARG A . n A 1 116 GLU 116 492 492 GLU GLU A . n A 1 117 GLY 117 493 493 GLY GLY A . n A 1 118 ARG 118 494 494 ARG ARG A . n A 1 119 LEU 119 495 495 LEU LEU A . n A 1 120 GLN 120 496 496 GLN GLN A . n A 1 121 LEU 121 497 497 LEU LEU A . n A 1 122 ALA 122 498 498 ALA ALA A . n A 1 123 ALA 123 499 499 ALA ALA A . n A 1 124 ASN 124 500 500 ASN ASN A . n A 1 125 THR 125 501 501 THR THR A . n A 1 126 VAL 126 502 502 VAL VAL A . n A 1 127 ALA 127 503 503 ALA ALA A . n A 1 128 LEU 128 504 504 LEU LEU A . n A 1 129 ALA 129 505 505 ALA ALA A . n A 1 130 GLY 130 506 506 GLY GLY A . n A 1 131 PHE 131 507 507 PHE PHE A . n A 1 132 THR 132 508 508 THR THR A . n A 1 133 PRO 133 509 509 PRO PRO A . n A 1 134 SER 134 510 510 SER SER A . n A 1 135 PHE 135 511 511 PHE PHE A . n A 1 136 SER 136 512 512 SER SER A . n A 1 137 GLU 137 513 513 GLU GLU A . n A 1 138 THR 138 514 514 THR THR A . n A 1 139 GLN 139 515 515 GLN GLN A . n A 1 140 LYS 140 516 516 LYS LYS A . n A 1 141 LYS 141 517 517 LYS LYS A . n A 1 142 LEU 142 518 518 LEU LEU A . n A 1 143 LEU 143 519 519 LEU LEU A . n A 1 144 LYS 144 520 520 LYS LYS A . n A 1 145 ASP 145 521 521 ASP ASP A . n A 1 146 LEU 146 522 522 LEU LEU A . n A 1 147 GLU 147 523 523 GLU GLU A . n A 1 148 ASP 148 524 524 ASP ASP A . n A 1 149 LYS 149 525 525 LYS LYS A . n A 1 150 TYR 150 526 526 TYR TYR A . n A 1 151 ARG 151 527 527 ARG ARG A . n A 1 152 VAL 152 528 528 VAL VAL A . n A 1 153 SER 153 529 529 SER SER A . n A 1 154 ARG 154 530 530 ARG ARG A . n A 1 155 TRP 155 531 531 TRP TRP A . n A 1 156 GLN 156 532 532 GLN GLN A . n A 1 157 PRO 157 533 533 PRO PRO A . n A 1 158 PRO 158 534 534 PRO PRO A . n A 1 159 SER 159 535 535 SER SER A . n A 1 160 PHE 160 536 536 PHE PHE A . n A 1 161 LYS 161 537 537 LYS LYS A . n A 1 162 GLU 162 538 538 GLU GLU A . n A 1 163 VAL 163 539 539 VAL VAL A . n A 1 164 ALA 164 540 540 ALA ALA A . n A 1 165 GLY 165 541 541 GLY GLY A . n A 1 166 SER 166 542 542 SER SER A . n A 1 167 PHE 167 543 543 PHE PHE A . n A 1 168 ASN 168 544 544 ASN ASN A . n A 1 169 LEU 169 545 545 LEU LEU A . n A 1 170 ASP 170 546 546 ASP ASP A . n A 1 171 PRO 171 547 547 PRO PRO A . n A 1 172 SER 172 548 548 SER SER A . n A 1 173 GLU 173 549 549 GLU GLU A . n A 1 174 LEU 174 550 550 LEU LEU A . n A 1 175 GLU 175 551 551 GLU GLU A . n A 1 176 GLU 176 552 552 GLU GLU A . n A 1 177 LEU 177 553 553 LEU LEU A . n A 1 178 LEU 178 554 554 LEU LEU A . n A 1 179 HIS 179 555 555 HIS HIS A . n A 1 180 TYR 180 556 556 TYR TYR A . n A 1 181 LEU 181 557 557 LEU LEU A . n A 1 182 VAL 182 558 558 VAL VAL A . n A 1 183 ARG 183 559 559 ARG ARG A . n A 1 184 GLU 184 560 560 GLU GLU A . n A 1 185 GLY 185 561 561 GLY GLY A . n A 1 186 VAL 186 562 562 VAL VAL A . n A 1 187 LEU 187 563 563 LEU LEU A . n A 1 188 VAL 188 564 564 VAL VAL A . n A 1 189 LYS 189 565 565 LYS LYS A . n A 1 190 ILE 190 566 566 ILE ILE A . n A 1 191 ASN 191 567 567 ASN ASN A . n A 1 192 ASP 192 568 568 ASP ASP A . n A 1 193 GLU 193 569 569 GLU GLU A . n A 1 194 PHE 194 570 570 PHE PHE A . n A 1 195 TYR 195 571 571 TYR TYR A . n A 1 196 TRP 196 572 572 TRP TRP A . n A 1 197 HIS 197 573 573 HIS HIS A . n A 1 198 ARG 198 574 574 ARG ARG A . n A 1 199 GLN 199 575 575 GLN GLN A . n A 1 200 ALA 200 576 576 ALA ALA A . n A 1 201 LEU 201 577 577 LEU LEU A . n A 1 202 GLY 202 578 578 GLY GLY A . n A 1 203 GLU 203 579 579 GLU GLN A . n A 1 204 ALA 204 580 580 ALA ALA A . n A 1 205 ARG 205 581 581 ARG ARG A . n A 1 206 GLU 206 582 582 GLU GLU A . n A 1 207 VAL 207 583 583 VAL VAL A . n A 1 208 ILE 208 584 584 ILE ILE A . n A 1 209 LYS 209 585 585 LYS LYS A . n A 1 210 ASN 210 586 586 ASN ASN A . n A 1 211 LEU 211 587 587 LEU LEU A . n A 1 212 ALA 212 588 588 ALA ALA A . n A 1 213 SER 213 589 589 SER SER A . n A 1 214 THR 214 590 590 THR THR A . n A 1 215 GLY 215 591 591 GLY GLY A . n A 1 216 PRO 216 592 592 PRO PRO A . n A 1 217 PHE 217 593 593 PHE PHE A . n A 1 218 GLY 218 594 594 GLY GLY A . n A 1 219 LEU 219 595 595 LEU LEU A . n A 1 220 ALA 220 596 596 ALA ALA A . n A 1 221 GLU 221 597 597 GLU GLU A . n A 1 222 ALA 222 598 598 ALA ALA A . n A 1 223 ARG 223 599 599 ARG ARG A . n A 1 224 ASP 224 600 600 ASP ASP A . n A 1 225 ALA 225 601 601 ALA ALA A . n A 1 226 LEU 226 602 602 LEU LEU A . n A 1 227 GLY 227 603 603 GLY GLY A . n A 1 228 SER 228 604 604 SER SER A . n A 1 229 SER 229 605 605 SER SER A . n A 1 230 ARG 230 606 606 ARG ARG A . n A 1 231 LYS 231 607 607 LYS LYS A . n A 1 232 TYR 232 608 608 TYR TYR A . n A 1 233 VAL 233 609 609 VAL VAL A . n A 1 234 LEU 234 610 610 LEU LEU A . n A 1 235 PRO 235 611 611 PRO PRO A . n A 1 236 LEU 236 612 612 LEU LEU A . n A 1 237 LEU 237 613 613 LEU LEU A . n A 1 238 GLU 238 614 614 GLU GLU A . n A 1 239 TYR 239 615 615 TYR TYR A . n A 1 240 LEU 240 616 616 LEU LEU A . n A 1 241 ASP 241 617 617 ASP ASP A . n A 1 242 GLN 242 618 618 GLN GLN A . n A 1 243 VAL 243 619 619 VAL VAL A . n A 1 244 LYS 244 620 620 LYS LYS A . n A 1 245 PHE 245 621 621 PHE PHE A . n A 1 246 THR 246 622 622 THR THR A . n A 1 247 ARG 247 623 623 ARG ARG A . n A 1 248 ARG 248 624 624 ARG ARG A . n A 1 249 VAL 249 625 625 VAL VAL A . n A 1 250 GLY 250 626 626 GLY GLY A . n A 1 251 ASP 251 627 627 ASP ASP A . n A 1 252 LYS 252 628 628 LYS LYS A . n A 1 253 ARG 253 629 629 ARG ARG A . n A 1 254 VAL 254 630 630 VAL VAL A . n A 1 255 VAL 255 631 631 VAL VAL A . n A 1 256 VAL 256 632 632 VAL VAL A . n A 1 257 GLY 257 633 633 GLY GLY A . n A 1 258 ASN 258 634 634 ASN ASN A . n # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id MSE _pdbx_struct_mod_residue.label_seq_id 41 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id MSE _pdbx_struct_mod_residue.auth_seq_id 417 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id MET _pdbx_struct_mod_residue.details SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-08-21 2 'Structure model' 1 1 2008-04-28 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 CNS refinement . ? 3 CNS phasing . ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 Y A Y1 743 ? ? O A HOH 685 ? ? 2.08 2 1 Y A Y1 744 ? ? O A HOH 732 ? ? 2.18 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CD _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 GLU _pdbx_validate_rmsd_bond.auth_seq_id_1 579 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OE2 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 GLU _pdbx_validate_rmsd_bond.auth_seq_id_2 579 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.333 _pdbx_validate_rmsd_bond.bond_target_value 1.252 _pdbx_validate_rmsd_bond.bond_deviation 0.081 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.011 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 429 ? ? 71.45 -125.01 2 1 ALA A 499 ? ? 58.01 -114.94 3 1 ARG A 530 ? ? 49.98 -108.90 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 381 ? CG ? A LYS 5 CG 2 1 Y 1 A LYS 381 ? CD ? A LYS 5 CD 3 1 Y 1 A LYS 381 ? CE ? A LYS 5 CE 4 1 Y 1 A LYS 381 ? NZ ? A LYS 5 NZ 5 1 Y 1 A ARG 391 ? CG ? A ARG 15 CG 6 1 Y 1 A ARG 391 ? CD ? A ARG 15 CD 7 1 Y 1 A ARG 391 ? NE ? A ARG 15 NE 8 1 Y 1 A ARG 391 ? CZ ? A ARG 15 CZ 9 1 Y 1 A ARG 391 ? NH1 ? A ARG 15 NH1 10 1 Y 1 A ARG 391 ? NH2 ? A ARG 15 NH2 11 1 Y 1 A GLU 429 ? CG ? A GLU 53 CG 12 1 Y 1 A GLU 429 ? CD ? A GLU 53 CD 13 1 Y 1 A GLU 429 ? OE1 ? A GLU 53 OE1 14 1 Y 1 A GLU 429 ? OE2 ? A GLU 53 OE2 15 1 Y 1 A GLU 468 ? CG ? A GLU 92 CG 16 1 Y 1 A GLU 468 ? CD ? A GLU 92 CD 17 1 Y 1 A GLU 468 ? OE1 ? A GLU 92 OE1 18 1 Y 1 A GLU 468 ? OE2 ? A GLU 92 OE2 19 1 Y 1 A ARG 472 ? CG ? A ARG 96 CG 20 1 Y 1 A ARG 472 ? CD ? A ARG 96 CD 21 1 Y 1 A ARG 472 ? NE ? A ARG 96 NE 22 1 Y 1 A ARG 472 ? CZ ? A ARG 96 CZ 23 1 Y 1 A ARG 472 ? NH1 ? A ARG 96 NH1 24 1 Y 1 A ARG 472 ? NH2 ? A ARG 96 NH2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'YTTRIUM ION' Y1 3 'SULFATE ION' SO4 4 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 Y1 1 743 743 Y1 Y1 A . C 2 Y1 1 744 744 Y1 Y1 A . D 3 SO4 1 745 745 SO4 SO4 A . E 4 HOH 1 635 635 HOH HOH A . E 4 HOH 2 636 636 HOH HOH A . E 4 HOH 3 637 637 HOH HOH A . E 4 HOH 4 638 638 HOH HOH A . E 4 HOH 5 639 639 HOH HOH A . E 4 HOH 6 640 640 HOH HOH A . E 4 HOH 7 641 641 HOH HOH A . E 4 HOH 8 642 642 HOH HOH A . E 4 HOH 9 643 643 HOH HOH A . E 4 HOH 10 644 644 HOH HOH A . E 4 HOH 11 645 645 HOH HOH A . E 4 HOH 12 646 646 HOH HOH A . E 4 HOH 13 647 647 HOH HOH A . E 4 HOH 14 648 648 HOH HOH A . E 4 HOH 15 649 649 HOH HOH A . E 4 HOH 16 650 650 HOH HOH A . E 4 HOH 17 651 651 HOH HOH A . E 4 HOH 18 652 652 HOH HOH A . E 4 HOH 19 653 653 HOH HOH A . E 4 HOH 20 654 654 HOH HOH A . E 4 HOH 21 655 655 HOH HOH A . E 4 HOH 22 656 656 HOH HOH A . E 4 HOH 23 657 657 HOH HOH A . E 4 HOH 24 658 658 HOH HOH A . E 4 HOH 25 659 659 HOH HOH A . E 4 HOH 26 660 660 HOH HOH A . E 4 HOH 27 661 661 HOH HOH A . E 4 HOH 28 662 662 HOH HOH A . E 4 HOH 29 663 663 HOH HOH A . E 4 HOH 30 664 664 HOH HOH A . E 4 HOH 31 665 665 HOH HOH A . E 4 HOH 32 666 666 HOH HOH A . E 4 HOH 33 667 667 HOH HOH A . E 4 HOH 34 668 668 HOH HOH A . E 4 HOH 35 669 669 HOH HOH A . E 4 HOH 36 670 670 HOH HOH A . E 4 HOH 37 671 671 HOH HOH A . E 4 HOH 38 672 672 HOH HOH A . E 4 HOH 39 673 673 HOH HOH A . E 4 HOH 40 674 674 HOH HOH A . E 4 HOH 41 675 675 HOH HOH A . E 4 HOH 42 676 676 HOH HOH A . E 4 HOH 43 677 677 HOH HOH A . E 4 HOH 44 678 678 HOH HOH A . E 4 HOH 45 679 679 HOH HOH A . E 4 HOH 46 680 680 HOH HOH A . E 4 HOH 47 681 681 HOH HOH A . E 4 HOH 48 682 682 HOH HOH A . E 4 HOH 49 683 683 HOH HOH A . E 4 HOH 50 684 684 HOH HOH A . E 4 HOH 51 685 685 HOH HOH A . E 4 HOH 52 686 686 HOH HOH A . E 4 HOH 53 687 687 HOH HOH A . E 4 HOH 54 688 688 HOH HOH A . E 4 HOH 55 689 689 HOH HOH A . E 4 HOH 56 690 690 HOH HOH A . E 4 HOH 57 691 691 HOH HOH A . E 4 HOH 58 692 692 HOH HOH A . E 4 HOH 59 693 693 HOH HOH A . E 4 HOH 60 694 694 HOH HOH A . E 4 HOH 61 695 695 HOH HOH A . E 4 HOH 62 696 696 HOH HOH A . E 4 HOH 63 697 697 HOH HOH A . E 4 HOH 64 698 698 HOH HOH A . E 4 HOH 65 699 699 HOH HOH A . E 4 HOH 66 700 700 HOH HOH A . E 4 HOH 67 701 701 HOH HOH A . E 4 HOH 68 702 702 HOH HOH A . E 4 HOH 69 703 703 HOH HOH A . E 4 HOH 70 704 704 HOH HOH A . E 4 HOH 71 705 705 HOH HOH A . E 4 HOH 72 706 706 HOH HOH A . E 4 HOH 73 707 707 HOH HOH A . E 4 HOH 74 708 708 HOH HOH A . E 4 HOH 75 709 709 HOH HOH A . E 4 HOH 76 710 710 HOH HOH A . E 4 HOH 77 711 711 HOH HOH A . E 4 HOH 78 712 712 HOH HOH A . E 4 HOH 79 713 713 HOH HOH A . E 4 HOH 80 714 714 HOH HOH A . E 4 HOH 81 715 715 HOH HOH A . E 4 HOH 82 716 716 HOH HOH A . E 4 HOH 83 717 717 HOH HOH A . E 4 HOH 84 718 718 HOH HOH A . E 4 HOH 85 719 719 HOH HOH A . E 4 HOH 86 720 720 HOH HOH A . E 4 HOH 87 721 721 HOH HOH A . E 4 HOH 88 722 722 HOH HOH A . E 4 HOH 89 723 723 HOH HOH A . E 4 HOH 90 724 724 HOH HOH A . E 4 HOH 91 725 725 HOH HOH A . E 4 HOH 92 726 726 HOH HOH A . E 4 HOH 93 727 727 HOH HOH A . E 4 HOH 94 728 728 HOH HOH A . E 4 HOH 95 729 729 HOH HOH A . E 4 HOH 96 730 730 HOH HOH A . E 4 HOH 97 731 731 HOH HOH A . E 4 HOH 98 732 732 HOH HOH A . E 4 HOH 99 733 733 HOH HOH A . E 4 HOH 100 734 734 HOH HOH A . E 4 HOH 101 735 735 HOH HOH A . E 4 HOH 102 736 736 HOH HOH A . E 4 HOH 103 737 737 HOH HOH A . E 4 HOH 104 738 738 HOH HOH A . E 4 HOH 105 739 739 HOH HOH A . E 4 HOH 106 740 740 HOH HOH A . E 4 HOH 107 741 741 HOH HOH A . E 4 HOH 108 742 742 HOH HOH A . #