data_1MD7 # _entry.id 1MD7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1MD7 pdb_00001md7 10.2210/pdb1md7/pdb RCSB RCSB016830 ? ? WWPDB D_1000016830 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1GPZ '1GPZ contains The same protein, in the same zymogen state, A longer fragment(CCP1-CCP2-SP), A dimeric assembly' unspecified PDB 1MD8 '1MD8 contains the active catalytic domain of complement protease C1r' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1MD7 _pdbx_database_status.recvd_initial_deposition_date 2002-08-07 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Budayova-Spano, M.' 1 'Grabarse, W.' 2 'Thielens, N.M.' 3 'Hillen, H.' 4 'Lacroix, M.' 5 'Schmidt, M.' 6 'Fontecilla-Camps, J.' 7 'Arlaud, G.J.' 8 'Gaboriaud, C.' 9 # _citation.id primary _citation.title ;Monomeric structures of the zymogen and active catalytic domain of complement protease c1r: further insights into the c1 activation mechanism ; _citation.journal_abbrev Structure _citation.journal_volume 10 _citation.page_first 1509 _citation.page_last 1519 _citation.year 2002 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12429092 _citation.pdbx_database_id_DOI '10.1016/S0969-2126(02)00881-X' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Budayova-Spano, M.' 1 ? primary 'Grabarse, W.' 2 ? primary 'Thielens, N.M.' 3 ? primary 'Hillen, H.' 4 ? primary 'Lacroix, M.' 5 ? primary 'Schmidt, M.' 6 ? primary 'Fontecilla-Camps, J.' 7 ? primary 'Arlaud, G.J.' 8 ? primary 'Gaboriaud, C.' 9 ? # _cell.entry_id 1MD7 _cell.length_a 167.060 _cell.length_b 167.060 _cell.length_c 43.648 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MD7 _symmetry.space_group_name_H-M 'P 64' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'C1R COMPLEMENT SERINE PROTEASE' 37053.914 1 3.4.21.41 S637A 'C-terminal CCP-SP domain' ? 2 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 3 water nat water 18.015 117 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Complement C1r component' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;DCGQPRNLPNGDFRYTTTMGVNTYKARIQYYCHEPYYKMQTRAGSRESEQGVYTCTAQGIWKNEQKGEKIPRCLPVCGKP VNPVEQRQRIIGGQKAKMGNFPWQVFTNIHGRGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFLGHTNVEELMKLGN HPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEKIAHDLRFVRLPV ANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDAGGVFAVRDPNTDRWVATGIVSWGIGCSRGYGFYTKVLNYV DWIKKEME ; _entity_poly.pdbx_seq_one_letter_code_can ;DCGQPRNLPNGDFRYTTTMGVNTYKARIQYYCHEPYYKMQTRAGSRESEQGVYTCTAQGIWKNEQKGEKIPRCLPVCGKP VNPVEQRQRIIGGQKAKMGNFPWQVFTNIHGRGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFLGHTNVEELMKLGN HPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEKIAHDLRFVRLPV ANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDAGGVFAVRDPNTDRWVATGIVSWGIGCSRGYGFYTKVLNYV DWIKKEME ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 CYS n 1 3 GLY n 1 4 GLN n 1 5 PRO n 1 6 ARG n 1 7 ASN n 1 8 LEU n 1 9 PRO n 1 10 ASN n 1 11 GLY n 1 12 ASP n 1 13 PHE n 1 14 ARG n 1 15 TYR n 1 16 THR n 1 17 THR n 1 18 THR n 1 19 MET n 1 20 GLY n 1 21 VAL n 1 22 ASN n 1 23 THR n 1 24 TYR n 1 25 LYS n 1 26 ALA n 1 27 ARG n 1 28 ILE n 1 29 GLN n 1 30 TYR n 1 31 TYR n 1 32 CYS n 1 33 HIS n 1 34 GLU n 1 35 PRO n 1 36 TYR n 1 37 TYR n 1 38 LYS n 1 39 MET n 1 40 GLN n 1 41 THR n 1 42 ARG n 1 43 ALA n 1 44 GLY n 1 45 SER n 1 46 ARG n 1 47 GLU n 1 48 SER n 1 49 GLU n 1 50 GLN n 1 51 GLY n 1 52 VAL n 1 53 TYR n 1 54 THR n 1 55 CYS n 1 56 THR n 1 57 ALA n 1 58 GLN n 1 59 GLY n 1 60 ILE n 1 61 TRP n 1 62 LYS n 1 63 ASN n 1 64 GLU n 1 65 GLN n 1 66 LYS n 1 67 GLY n 1 68 GLU n 1 69 LYS n 1 70 ILE n 1 71 PRO n 1 72 ARG n 1 73 CYS n 1 74 LEU n 1 75 PRO n 1 76 VAL n 1 77 CYS n 1 78 GLY n 1 79 LYS n 1 80 PRO n 1 81 VAL n 1 82 ASN n 1 83 PRO n 1 84 VAL n 1 85 GLU n 1 86 GLN n 1 87 ARG n 1 88 GLN n 1 89 ARG n 1 90 ILE n 1 91 ILE n 1 92 GLY n 1 93 GLY n 1 94 GLN n 1 95 LYS n 1 96 ALA n 1 97 LYS n 1 98 MET n 1 99 GLY n 1 100 ASN n 1 101 PHE n 1 102 PRO n 1 103 TRP n 1 104 GLN n 1 105 VAL n 1 106 PHE n 1 107 THR n 1 108 ASN n 1 109 ILE n 1 110 HIS n 1 111 GLY n 1 112 ARG n 1 113 GLY n 1 114 GLY n 1 115 GLY n 1 116 ALA n 1 117 LEU n 1 118 LEU n 1 119 GLY n 1 120 ASP n 1 121 ARG n 1 122 TRP n 1 123 ILE n 1 124 LEU n 1 125 THR n 1 126 ALA n 1 127 ALA n 1 128 HIS n 1 129 THR n 1 130 LEU n 1 131 TYR n 1 132 PRO n 1 133 LYS n 1 134 GLU n 1 135 HIS n 1 136 GLU n 1 137 ALA n 1 138 GLN n 1 139 SER n 1 140 ASN n 1 141 ALA n 1 142 SER n 1 143 LEU n 1 144 ASP n 1 145 VAL n 1 146 PHE n 1 147 LEU n 1 148 GLY n 1 149 HIS n 1 150 THR n 1 151 ASN n 1 152 VAL n 1 153 GLU n 1 154 GLU n 1 155 LEU n 1 156 MET n 1 157 LYS n 1 158 LEU n 1 159 GLY n 1 160 ASN n 1 161 HIS n 1 162 PRO n 1 163 ILE n 1 164 ARG n 1 165 ARG n 1 166 VAL n 1 167 SER n 1 168 VAL n 1 169 HIS n 1 170 PRO n 1 171 ASP n 1 172 TYR n 1 173 ARG n 1 174 GLN n 1 175 ASP n 1 176 GLU n 1 177 SER n 1 178 TYR n 1 179 ASN n 1 180 PHE n 1 181 GLU n 1 182 GLY n 1 183 ASP n 1 184 ILE n 1 185 ALA n 1 186 LEU n 1 187 LEU n 1 188 GLU n 1 189 LEU n 1 190 GLU n 1 191 ASN n 1 192 SER n 1 193 VAL n 1 194 THR n 1 195 LEU n 1 196 GLY n 1 197 PRO n 1 198 ASN n 1 199 LEU n 1 200 LEU n 1 201 PRO n 1 202 ILE n 1 203 CYS n 1 204 LEU n 1 205 PRO n 1 206 ASP n 1 207 ASN n 1 208 ASP n 1 209 THR n 1 210 PHE n 1 211 TYR n 1 212 ASP n 1 213 LEU n 1 214 GLY n 1 215 LEU n 1 216 MET n 1 217 GLY n 1 218 TYR n 1 219 VAL n 1 220 SER n 1 221 GLY n 1 222 PHE n 1 223 GLY n 1 224 VAL n 1 225 MET n 1 226 GLU n 1 227 GLU n 1 228 LYS n 1 229 ILE n 1 230 ALA n 1 231 HIS n 1 232 ASP n 1 233 LEU n 1 234 ARG n 1 235 PHE n 1 236 VAL n 1 237 ARG n 1 238 LEU n 1 239 PRO n 1 240 VAL n 1 241 ALA n 1 242 ASN n 1 243 PRO n 1 244 GLN n 1 245 ALA n 1 246 CYS n 1 247 GLU n 1 248 ASN n 1 249 TRP n 1 250 LEU n 1 251 ARG n 1 252 GLY n 1 253 LYS n 1 254 ASN n 1 255 ARG n 1 256 MET n 1 257 ASP n 1 258 VAL n 1 259 PHE n 1 260 SER n 1 261 GLN n 1 262 ASN n 1 263 MET n 1 264 PHE n 1 265 CYS n 1 266 ALA n 1 267 GLY n 1 268 HIS n 1 269 PRO n 1 270 SER n 1 271 LEU n 1 272 LYS n 1 273 GLN n 1 274 ASP n 1 275 ALA n 1 276 CYS n 1 277 GLN n 1 278 GLY n 1 279 ASP n 1 280 ALA n 1 281 GLY n 1 282 GLY n 1 283 VAL n 1 284 PHE n 1 285 ALA n 1 286 VAL n 1 287 ARG n 1 288 ASP n 1 289 PRO n 1 290 ASN n 1 291 THR n 1 292 ASP n 1 293 ARG n 1 294 TRP n 1 295 VAL n 1 296 ALA n 1 297 THR n 1 298 GLY n 1 299 ILE n 1 300 VAL n 1 301 SER n 1 302 TRP n 1 303 GLY n 1 304 ILE n 1 305 GLY n 1 306 CYS n 1 307 SER n 1 308 ARG n 1 309 GLY n 1 310 TYR n 1 311 GLY n 1 312 PHE n 1 313 TYR n 1 314 THR n 1 315 LYS n 1 316 VAL n 1 317 LEU n 1 318 ASN n 1 319 TYR n 1 320 VAL n 1 321 ASP n 1 322 TRP n 1 323 ILE n 1 324 LYS n 1 325 LYS n 1 326 GLU n 1 327 MET n 1 328 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name 'cabbage looper' _entity_src_gen.pdbx_host_org_scientific_name 'Trichoplusia ni' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7111 _entity_src_gen.host_org_genus Trichoplusia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line 'High FiveTM' _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type BACULOVIRUS _entity_src_gen.pdbx_host_org_vector pNT-BAC _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code C1R_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DCGQPRNLPNGDFRYTTTMGVNTYKARIQYYCHEPYYKMQTRAGSRESEQGVYTCTAQGIWKNEQKGEKIPRCLPVCGKP VNPVEQRQRIIGGQKAKMGNFPWQVFTNIHGRGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFLGHTNVEELMKLGN HPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEKIAHDLRFVRLPV ANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSRGYGFYTKVLNYV DWIKKEME ; _struct_ref.pdbx_align_begin 375 _struct_ref.pdbx_db_accession P00736 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1MD7 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 328 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P00736 _struct_ref_seq.db_align_beg 375 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 702 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 358 _struct_ref_seq.pdbx_auth_seq_align_end 685 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 1MD7 _struct_ref_seq_dif.mon_id ALA _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 280 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P00736 _struct_ref_seq_dif.db_mon_id SER _struct_ref_seq_dif.pdbx_seq_db_seq_num 654 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 637 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1MD7 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 74.07 _exptl_crystal.density_Matthews 4.74 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.4 _exptl_crystal_grow.pdbx_details 'ammonium sulfate, TAPS, pH 8.4, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 77 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2000-10-28 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si (111) mirror' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.964 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID13' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID13 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.964 # _reflns.entry_id 1MD7 _reflns.observed_criterion_sigma_I 1.0 _reflns.observed_criterion_sigma_F 1.0 _reflns.d_resolution_low 30.0 _reflns.d_resolution_high 3.2 _reflns.number_obs 11104 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.12 _reflns.pdbx_netI_over_sigmaI 5.0 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 3.2 _reflns_shell.d_res_low 3.37 _reflns_shell.percent_possible_all 95.3 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.36 _reflns_shell.meanI_over_sigI_obs 1.8 _reflns_shell.pdbx_redundancy 3.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1MD7 _refine.ls_number_reflns_obs 10900 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1854719.21 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.ls_d_res_low 11.94 _refine.ls_d_res_high 3.20 _refine.ls_percent_reflns_obs 93.9 _refine.ls_R_factor_obs 0.2428 _refine.ls_R_factor_all 0.2428 _refine.ls_R_factor_R_work 0.217 _refine.ls_R_factor_R_free 0.285 _refine.ls_R_factor_R_free_error 0.012 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.2 _refine.ls_number_reflns_R_free 568 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 29.2 _refine.aniso_B[1][1] 2.68 _refine.aniso_B[2][2] 2.68 _refine.aniso_B[3][3] -5.36 _refine.aniso_B[1][2] 10.90 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.233296 _refine.solvent_model_param_bsol 10.4649 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1MD7 _refine_analyze.Luzzati_coordinate_error_obs 0.34 _refine_analyze.Luzzati_sigma_a_obs 0.48 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.45 _refine_analyze.Luzzati_sigma_a_free 0.46 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2400 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 14 _refine_hist.number_atoms_solvent 117 _refine_hist.number_atoms_total 2531 _refine_hist.d_res_high 3.20 _refine_hist.d_res_low 11.94 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.4 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 25.0 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.99 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 6.96 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 11.49 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 3.82 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 5.83 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 3.20 _refine_ls_shell.d_res_low 3.40 _refine_ls_shell.number_reflns_R_work 1639 _refine_ls_shell.R_factor_R_work 0.281 _refine_ls_shell.percent_reflns_obs 90.6 _refine_ls_shell.R_factor_R_free 0.319 _refine_ls_shell.R_factor_R_free_error 0.033 _refine_ls_shell.percent_reflns_R_free 5.4 _refine_ls_shell.number_reflns_R_free 94 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 CARBOHYDRATE.PARAM CARBOHYDRATE.TOP 'X-RAY DIFFRACTION' 3 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 1MD7 _struct.title 'Monomeric structure of the zymogen of complement protease C1r' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1MD7 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'complement, innate immunity, serine protease, activation, substrate specificity, Hydrolase' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details 'The biological assembly is a monomer' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 126 ? TYR A 131 ? ALA A 483 TYR A 488 5 ? 6 HELX_P HELX_P2 2 ASN A 151 ? GLY A 159 ? ASN A 508 GLY A 516 1 ? 9 HELX_P HELX_P3 3 ASN A 207 ? TYR A 211 ? ASN A 564 TYR A 568 5 ? 5 HELX_P HELX_P4 4 LEU A 271 ? GLN A 277 ? LEU A 628 GLN A 634 5 ? 7 HELX_P HELX_P5 5 TYR A 319 ? GLU A 328 ? TYR A 676 GLU A 685 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 2 SG ? ? ? 1_555 A CYS 55 SG ? ? A CYS 359 A CYS 412 1_555 ? ? ? ? ? ? ? 2.026 ? ? disulf2 disulf ? ? A CYS 32 SG ? ? ? 1_555 A CYS 73 SG ? ? A CYS 389 A CYS 430 1_555 ? ? ? ? ? ? ? 2.038 ? ? disulf3 disulf ? ? A CYS 77 SG ? ? ? 1_555 A CYS 203 SG ? ? A CYS 434 A CYS 560 1_555 ? ? ? ? ? ? ? 2.042 ? ? disulf4 disulf ? ? A CYS 246 SG ? ? ? 1_555 A CYS 265 SG ? ? A CYS 603 A CYS 622 1_555 ? ? ? ? ? ? ? 2.042 ? ? disulf5 disulf ? ? A CYS 276 SG ? ? ? 1_555 A CYS 306 SG ? ? A CYS 633 A CYS 663 1_555 ? ? ? ? ? ? ? 2.030 ? ? covale1 covale one ? A ASN 140 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 497 A NAG 1001 1_555 ? ? ? ? ? ? ? 1.459 ? N-Glycosylation # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLU _struct_mon_prot_cis.label_seq_id 34 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLU _struct_mon_prot_cis.auth_seq_id 391 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 35 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 392 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.08 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? C ? 6 ? D ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel C 5 6 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel D 4 5 ? anti-parallel D 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 11 ? TYR A 15 ? GLY A 368 TYR A 372 A 2 ARG A 27 ? CYS A 32 ? ARG A 384 CYS A 389 A 3 VAL A 52 ? CYS A 55 ? VAL A 409 CYS A 412 A 4 TRP A 61 ? LYS A 62 ? TRP A 418 LYS A 419 B 1 TYR A 37 ? MET A 39 ? TYR A 394 MET A 396 B 2 CYS A 73 ? PRO A 75 ? CYS A 430 PRO A 432 C 1 VAL A 145 ? LEU A 147 ? VAL A 502 LEU A 504 C 2 GLN A 104 ? ASN A 108 ? GLN A 461 ASN A 465 C 3 ARG A 112 ? LEU A 118 ? ARG A 469 LEU A 475 C 4 TRP A 122 ? THR A 125 ? TRP A 479 THR A 482 C 5 ALA A 185 ? LEU A 189 ? ALA A 542 LEU A 546 C 6 ILE A 163 ? VAL A 168 ? ILE A 520 VAL A 525 D 1 ARG A 234 ? PRO A 239 ? ARG A 591 PRO A 596 D 2 MET A 216 ? GLY A 221 ? MET A 573 GLY A 578 D 3 PHE A 284 ? VAL A 286 ? PHE A 641 VAL A 643 D 4 VAL A 295 ? VAL A 300 ? VAL A 652 VAL A 657 D 5 TYR A 310 ? LYS A 315 ? TYR A 667 LYS A 672 D 6 MET A 263 ? GLY A 267 ? MET A 620 GLY A 624 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ARG A 14 ? N ARG A 371 O GLN A 29 ? O GLN A 386 A 2 3 N ILE A 28 ? N ILE A 385 O TYR A 53 ? O TYR A 410 A 3 4 N THR A 54 ? N THR A 411 O LYS A 62 ? O LYS A 419 B 1 2 N LYS A 38 ? N LYS A 395 O LEU A 74 ? O LEU A 431 C 1 2 O PHE A 146 ? O PHE A 503 N PHE A 106 ? N PHE A 463 C 2 3 N VAL A 105 ? N VAL A 462 O GLY A 115 ? O GLY A 472 C 3 4 N ALA A 116 ? N ALA A 473 O LEU A 124 ? O LEU A 481 C 4 5 N THR A 125 ? N THR A 482 O ALA A 185 ? O ALA A 542 C 5 6 O LEU A 186 ? O LEU A 543 N SER A 167 ? N SER A 524 D 1 2 O VAL A 236 ? O VAL A 593 N VAL A 219 ? N VAL A 576 D 2 3 N TYR A 218 ? N TYR A 575 O ALA A 285 ? O ALA A 642 D 3 4 N PHE A 284 ? N PHE A 641 O THR A 297 ? O THR A 654 D 4 5 N ILE A 299 ? N ILE A 656 O THR A 314 ? O THR A 671 D 5 6 O TYR A 313 ? O TYR A 670 N PHE A 264 ? N PHE A 621 # _database_PDB_matrix.entry_id 1MD7 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1MD7 _atom_sites.fract_transf_matrix[1][1] 0.005986 _atom_sites.fract_transf_matrix[1][2] 0.003456 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.006912 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022910 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _database_PDB_caveat.text 'NAG A 1001 HAS WRONG CHIRALITY AT ATOM C1' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 358 358 ASP ASP A . n A 1 2 CYS 2 359 359 CYS CYS A . n A 1 3 GLY 3 360 360 GLY GLY A . n A 1 4 GLN 4 361 361 GLN GLN A . n A 1 5 PRO 5 362 362 PRO PRO A . n A 1 6 ARG 6 363 363 ARG ARG A . n A 1 7 ASN 7 364 364 ASN ASN A . n A 1 8 LEU 8 365 365 LEU LEU A . n A 1 9 PRO 9 366 366 PRO PRO A . n A 1 10 ASN 10 367 367 ASN ASN A . n A 1 11 GLY 11 368 368 GLY GLY A . n A 1 12 ASP 12 369 369 ASP ASP A . n A 1 13 PHE 13 370 370 PHE PHE A . n A 1 14 ARG 14 371 371 ARG ARG A . n A 1 15 TYR 15 372 372 TYR TYR A . n A 1 16 THR 16 373 373 THR THR A . n A 1 17 THR 17 374 374 THR THR A . n A 1 18 THR 18 375 375 THR THR A . n A 1 19 MET 19 376 376 MET MET A . n A 1 20 GLY 20 377 377 GLY GLY A . n A 1 21 VAL 21 378 378 VAL VAL A . n A 1 22 ASN 22 379 379 ASN ASN A . n A 1 23 THR 23 380 380 THR THR A . n A 1 24 TYR 24 381 381 TYR TYR A . n A 1 25 LYS 25 382 382 LYS LYS A . n A 1 26 ALA 26 383 383 ALA ALA A . n A 1 27 ARG 27 384 384 ARG ARG A . n A 1 28 ILE 28 385 385 ILE ILE A . n A 1 29 GLN 29 386 386 GLN GLN A . n A 1 30 TYR 30 387 387 TYR TYR A . n A 1 31 TYR 31 388 388 TYR TYR A . n A 1 32 CYS 32 389 389 CYS CYS A . n A 1 33 HIS 33 390 390 HIS HIS A . n A 1 34 GLU 34 391 391 GLU GLU A . n A 1 35 PRO 35 392 392 PRO PRO A . n A 1 36 TYR 36 393 393 TYR TYR A . n A 1 37 TYR 37 394 394 TYR TYR A . n A 1 38 LYS 38 395 395 LYS LYS A . n A 1 39 MET 39 396 396 MET MET A . n A 1 40 GLN 40 397 397 GLN GLN A . n A 1 41 THR 41 398 398 THR THR A . n A 1 42 ARG 42 399 ? ? ? A . n A 1 43 ALA 43 400 ? ? ? A . n A 1 44 GLY 44 401 ? ? ? A . n A 1 45 SER 45 402 ? ? ? A . n A 1 46 ARG 46 403 ? ? ? A . n A 1 47 GLU 47 404 ? ? ? A . n A 1 48 SER 48 405 ? ? ? A . n A 1 49 GLU 49 406 ? ? ? A . n A 1 50 GLN 50 407 407 GLN GLN A . n A 1 51 GLY 51 408 408 GLY GLY A . n A 1 52 VAL 52 409 409 VAL VAL A . n A 1 53 TYR 53 410 410 TYR TYR A . n A 1 54 THR 54 411 411 THR THR A . n A 1 55 CYS 55 412 412 CYS CYS A . n A 1 56 THR 56 413 413 THR THR A . n A 1 57 ALA 57 414 414 ALA ALA A . n A 1 58 GLN 58 415 415 GLN GLN A . n A 1 59 GLY 59 416 416 GLY GLY A . n A 1 60 ILE 60 417 417 ILE ILE A . n A 1 61 TRP 61 418 418 TRP TRP A . n A 1 62 LYS 62 419 419 LYS LYS A . n A 1 63 ASN 63 420 420 ASN ASN A . n A 1 64 GLU 64 421 421 GLU GLU A . n A 1 65 GLN 65 422 422 GLN GLN A . n A 1 66 LYS 66 423 423 LYS LYS A . n A 1 67 GLY 67 424 424 GLY GLY A . n A 1 68 GLU 68 425 425 GLU GLU A . n A 1 69 LYS 69 426 426 LYS LYS A . n A 1 70 ILE 70 427 427 ILE ILE A . n A 1 71 PRO 71 428 428 PRO PRO A . n A 1 72 ARG 72 429 429 ARG ARG A . n A 1 73 CYS 73 430 430 CYS CYS A . n A 1 74 LEU 74 431 431 LEU LEU A . n A 1 75 PRO 75 432 432 PRO PRO A . n A 1 76 VAL 76 433 433 VAL VAL A . n A 1 77 CYS 77 434 434 CYS CYS A . n A 1 78 GLY 78 435 435 GLY GLY A . n A 1 79 LYS 79 436 436 LYS LYS A . n A 1 80 PRO 80 437 437 PRO PRO A . n A 1 81 VAL 81 438 438 VAL VAL A . n A 1 82 ASN 82 439 439 ASN ASN A . n A 1 83 PRO 83 440 440 PRO PRO A . n A 1 84 VAL 84 441 441 VAL VAL A . n A 1 85 GLU 85 442 442 GLU GLU A . n A 1 86 GLN 86 443 ? ? ? A . n A 1 87 ARG 87 444 ? ? ? A . n A 1 88 GLN 88 445 ? ? ? A . n A 1 89 ARG 89 446 ? ? ? A . n A 1 90 ILE 90 447 447 ILE ILE A . n A 1 91 ILE 91 448 448 ILE ILE A . n A 1 92 GLY 92 449 449 GLY GLY A . n A 1 93 GLY 93 450 450 GLY GLY A . n A 1 94 GLN 94 451 451 GLN GLN A . n A 1 95 LYS 95 452 452 LYS LYS A . n A 1 96 ALA 96 453 453 ALA ALA A . n A 1 97 LYS 97 454 454 LYS LYS A . n A 1 98 MET 98 455 455 MET MET A . n A 1 99 GLY 99 456 456 GLY GLY A . n A 1 100 ASN 100 457 457 ASN ASN A . n A 1 101 PHE 101 458 458 PHE PHE A . n A 1 102 PRO 102 459 459 PRO PRO A . n A 1 103 TRP 103 460 460 TRP TRP A . n A 1 104 GLN 104 461 461 GLN GLN A . n A 1 105 VAL 105 462 462 VAL VAL A . n A 1 106 PHE 106 463 463 PHE PHE A . n A 1 107 THR 107 464 464 THR THR A . n A 1 108 ASN 108 465 465 ASN ASN A . n A 1 109 ILE 109 466 466 ILE ILE A . n A 1 110 HIS 110 467 467 HIS HIS A . n A 1 111 GLY 111 468 468 GLY GLY A . n A 1 112 ARG 112 469 469 ARG ARG A . n A 1 113 GLY 113 470 470 GLY GLY A . n A 1 114 GLY 114 471 471 GLY GLY A . n A 1 115 GLY 115 472 472 GLY GLY A . n A 1 116 ALA 116 473 473 ALA ALA A . n A 1 117 LEU 117 474 474 LEU LEU A . n A 1 118 LEU 118 475 475 LEU LEU A . n A 1 119 GLY 119 476 476 GLY GLY A . n A 1 120 ASP 120 477 477 ASP ASP A . n A 1 121 ARG 121 478 478 ARG ARG A . n A 1 122 TRP 122 479 479 TRP TRP A . n A 1 123 ILE 123 480 480 ILE ILE A . n A 1 124 LEU 124 481 481 LEU LEU A . n A 1 125 THR 125 482 482 THR THR A . n A 1 126 ALA 126 483 483 ALA ALA A . n A 1 127 ALA 127 484 484 ALA ALA A . n A 1 128 HIS 128 485 485 HIS HIS A . n A 1 129 THR 129 486 486 THR THR A . n A 1 130 LEU 130 487 487 LEU LEU A . n A 1 131 TYR 131 488 488 TYR TYR A . n A 1 132 PRO 132 489 489 PRO PRO A . n A 1 133 LYS 133 490 490 LYS LYS A . n A 1 134 GLU 134 491 491 GLU GLU A . n A 1 135 HIS 135 492 492 HIS HIS A . n A 1 136 GLU 136 493 493 GLU GLU A . n A 1 137 ALA 137 494 494 ALA ALA A . n A 1 138 GLN 138 495 495 GLN GLN A . n A 1 139 SER 139 496 496 SER SER A . n A 1 140 ASN 140 497 497 ASN ASN A . n A 1 141 ALA 141 498 498 ALA ALA A . n A 1 142 SER 142 499 499 SER SER A . n A 1 143 LEU 143 500 500 LEU LEU A . n A 1 144 ASP 144 501 501 ASP ASP A . n A 1 145 VAL 145 502 502 VAL VAL A . n A 1 146 PHE 146 503 503 PHE PHE A . n A 1 147 LEU 147 504 504 LEU LEU A . n A 1 148 GLY 148 505 505 GLY GLY A . n A 1 149 HIS 149 506 506 HIS HIS A . n A 1 150 THR 150 507 507 THR THR A . n A 1 151 ASN 151 508 508 ASN ASN A . n A 1 152 VAL 152 509 509 VAL VAL A . n A 1 153 GLU 153 510 510 GLU GLU A . n A 1 154 GLU 154 511 511 GLU GLU A . n A 1 155 LEU 155 512 512 LEU LEU A . n A 1 156 MET 156 513 513 MET MET A . n A 1 157 LYS 157 514 514 LYS LYS A . n A 1 158 LEU 158 515 515 LEU LEU A . n A 1 159 GLY 159 516 516 GLY GLY A . n A 1 160 ASN 160 517 517 ASN ASN A . n A 1 161 HIS 161 518 518 HIS HIS A . n A 1 162 PRO 162 519 519 PRO PRO A . n A 1 163 ILE 163 520 520 ILE ILE A . n A 1 164 ARG 164 521 521 ARG ARG A . n A 1 165 ARG 165 522 522 ARG ARG A . n A 1 166 VAL 166 523 523 VAL VAL A . n A 1 167 SER 167 524 524 SER SER A . n A 1 168 VAL 168 525 525 VAL VAL A . n A 1 169 HIS 169 526 526 HIS HIS A . n A 1 170 PRO 170 527 527 PRO PRO A . n A 1 171 ASP 171 528 528 ASP ASP A . n A 1 172 TYR 172 529 529 TYR TYR A . n A 1 173 ARG 173 530 530 ARG ARG A . n A 1 174 GLN 174 531 531 GLN GLN A . n A 1 175 ASP 175 532 532 ASP ASP A . n A 1 176 GLU 176 533 533 GLU GLU A . n A 1 177 SER 177 534 534 SER SER A . n A 1 178 TYR 178 535 535 TYR TYR A . n A 1 179 ASN 179 536 536 ASN ASN A . n A 1 180 PHE 180 537 537 PHE PHE A . n A 1 181 GLU 181 538 538 GLU GLU A . n A 1 182 GLY 182 539 539 GLY GLY A . n A 1 183 ASP 183 540 540 ASP ASP A . n A 1 184 ILE 184 541 541 ILE ILE A . n A 1 185 ALA 185 542 542 ALA ALA A . n A 1 186 LEU 186 543 543 LEU LEU A . n A 1 187 LEU 187 544 544 LEU LEU A . n A 1 188 GLU 188 545 545 GLU GLU A . n A 1 189 LEU 189 546 546 LEU LEU A . n A 1 190 GLU 190 547 547 GLU GLU A . n A 1 191 ASN 191 548 548 ASN ASN A . n A 1 192 SER 192 549 549 SER SER A . n A 1 193 VAL 193 550 550 VAL VAL A . n A 1 194 THR 194 551 551 THR THR A . n A 1 195 LEU 195 552 552 LEU LEU A . n A 1 196 GLY 196 553 553 GLY GLY A . n A 1 197 PRO 197 554 554 PRO PRO A . n A 1 198 ASN 198 555 555 ASN ASN A . n A 1 199 LEU 199 556 556 LEU LEU A . n A 1 200 LEU 200 557 557 LEU LEU A . n A 1 201 PRO 201 558 558 PRO PRO A . n A 1 202 ILE 202 559 559 ILE ILE A . n A 1 203 CYS 203 560 560 CYS CYS A . n A 1 204 LEU 204 561 561 LEU LEU A . n A 1 205 PRO 205 562 562 PRO PRO A . n A 1 206 ASP 206 563 563 ASP ASP A . n A 1 207 ASN 207 564 564 ASN ASN A . n A 1 208 ASP 208 565 565 ASP ASP A . n A 1 209 THR 209 566 566 THR THR A . n A 1 210 PHE 210 567 567 PHE PHE A . n A 1 211 TYR 211 568 568 TYR TYR A . n A 1 212 ASP 212 569 569 ASP ASP A . n A 1 213 LEU 213 570 570 LEU LEU A . n A 1 214 GLY 214 571 571 GLY GLY A . n A 1 215 LEU 215 572 572 LEU LEU A . n A 1 216 MET 216 573 573 MET MET A . n A 1 217 GLY 217 574 574 GLY GLY A . n A 1 218 TYR 218 575 575 TYR TYR A . n A 1 219 VAL 219 576 576 VAL VAL A . n A 1 220 SER 220 577 577 SER SER A . n A 1 221 GLY 221 578 578 GLY GLY A . n A 1 222 PHE 222 579 579 PHE PHE A . n A 1 223 GLY 223 580 580 GLY GLY A . n A 1 224 VAL 224 581 ? ? ? A . n A 1 225 MET 225 582 ? ? ? A . n A 1 226 GLU 226 583 ? ? ? A . n A 1 227 GLU 227 584 ? ? ? A . n A 1 228 LYS 228 585 ? ? ? A . n A 1 229 ILE 229 586 ? ? ? A . n A 1 230 ALA 230 587 587 ALA ALA A . n A 1 231 HIS 231 588 588 HIS HIS A . n A 1 232 ASP 232 589 589 ASP ASP A . n A 1 233 LEU 233 590 590 LEU LEU A . n A 1 234 ARG 234 591 591 ARG ARG A . n A 1 235 PHE 235 592 592 PHE PHE A . n A 1 236 VAL 236 593 593 VAL VAL A . n A 1 237 ARG 237 594 594 ARG ARG A . n A 1 238 LEU 238 595 595 LEU LEU A . n A 1 239 PRO 239 596 596 PRO PRO A . n A 1 240 VAL 240 597 597 VAL VAL A . n A 1 241 ALA 241 598 598 ALA ALA A . n A 1 242 ASN 242 599 599 ASN ASN A . n A 1 243 PRO 243 600 600 PRO PRO A . n A 1 244 GLN 244 601 601 GLN GLN A . n A 1 245 ALA 245 602 602 ALA ALA A . n A 1 246 CYS 246 603 603 CYS CYS A . n A 1 247 GLU 247 604 604 GLU GLU A . n A 1 248 ASN 248 605 605 ASN ASN A . n A 1 249 TRP 249 606 606 TRP TRP A . n A 1 250 LEU 250 607 607 LEU LEU A . n A 1 251 ARG 251 608 ? ? ? A . n A 1 252 GLY 252 609 ? ? ? A . n A 1 253 LYS 253 610 ? ? ? A . n A 1 254 ASN 254 611 ? ? ? A . n A 1 255 ARG 255 612 ? ? ? A . n A 1 256 MET 256 613 ? ? ? A . n A 1 257 ASP 257 614 614 ASP ASP A . n A 1 258 VAL 258 615 615 VAL VAL A . n A 1 259 PHE 259 616 616 PHE PHE A . n A 1 260 SER 260 617 617 SER SER A . n A 1 261 GLN 261 618 618 GLN GLN A . n A 1 262 ASN 262 619 619 ASN ASN A . n A 1 263 MET 263 620 620 MET MET A . n A 1 264 PHE 264 621 621 PHE PHE A . n A 1 265 CYS 265 622 622 CYS CYS A . n A 1 266 ALA 266 623 623 ALA ALA A . n A 1 267 GLY 267 624 624 GLY GLY A . n A 1 268 HIS 268 625 625 HIS HIS A . n A 1 269 PRO 269 626 626 PRO PRO A . n A 1 270 SER 270 627 627 SER SER A . n A 1 271 LEU 271 628 628 LEU LEU A . n A 1 272 LYS 272 629 629 LYS LYS A . n A 1 273 GLN 273 630 630 GLN GLN A . n A 1 274 ASP 274 631 631 ASP ASP A . n A 1 275 ALA 275 632 632 ALA ALA A . n A 1 276 CYS 276 633 633 CYS CYS A . n A 1 277 GLN 277 634 634 GLN GLN A . n A 1 278 GLY 278 635 635 GLY GLY A . n A 1 279 ASP 279 636 636 ASP ASP A . n A 1 280 ALA 280 637 637 ALA ALA A . n A 1 281 GLY 281 638 638 GLY GLY A . n A 1 282 GLY 282 639 639 GLY GLY A . n A 1 283 VAL 283 640 640 VAL VAL A . n A 1 284 PHE 284 641 641 PHE PHE A . n A 1 285 ALA 285 642 642 ALA ALA A . n A 1 286 VAL 286 643 643 VAL VAL A . n A 1 287 ARG 287 644 644 ARG ARG A . n A 1 288 ASP 288 645 645 ASP ASP A . n A 1 289 PRO 289 646 646 PRO PRO A . n A 1 290 ASN 290 647 647 ASN ASN A . n A 1 291 THR 291 648 648 THR THR A . n A 1 292 ASP 292 649 649 ASP ASP A . n A 1 293 ARG 293 650 650 ARG ARG A . n A 1 294 TRP 294 651 651 TRP TRP A . n A 1 295 VAL 295 652 652 VAL VAL A . n A 1 296 ALA 296 653 653 ALA ALA A . n A 1 297 THR 297 654 654 THR THR A . n A 1 298 GLY 298 655 655 GLY GLY A . n A 1 299 ILE 299 656 656 ILE ILE A . n A 1 300 VAL 300 657 657 VAL VAL A . n A 1 301 SER 301 658 658 SER SER A . n A 1 302 TRP 302 659 659 TRP TRP A . n A 1 303 GLY 303 660 660 GLY GLY A . n A 1 304 ILE 304 661 661 ILE ILE A . n A 1 305 GLY 305 662 662 GLY GLY A . n A 1 306 CYS 306 663 663 CYS CYS A . n A 1 307 SER 307 664 664 SER SER A . n A 1 308 ARG 308 665 665 ARG ARG A . n A 1 309 GLY 309 666 666 GLY GLY A . n A 1 310 TYR 310 667 667 TYR TYR A . n A 1 311 GLY 311 668 668 GLY GLY A . n A 1 312 PHE 312 669 669 PHE PHE A . n A 1 313 TYR 313 670 670 TYR TYR A . n A 1 314 THR 314 671 671 THR THR A . n A 1 315 LYS 315 672 672 LYS LYS A . n A 1 316 VAL 316 673 673 VAL VAL A . n A 1 317 LEU 317 674 674 LEU LEU A . n A 1 318 ASN 318 675 675 ASN ASN A . n A 1 319 TYR 319 676 676 TYR TYR A . n A 1 320 VAL 320 677 677 VAL VAL A . n A 1 321 ASP 321 678 678 ASP ASP A . n A 1 322 TRP 322 679 679 TRP TRP A . n A 1 323 ILE 323 680 680 ILE ILE A . n A 1 324 LYS 324 681 681 LYS LYS A . n A 1 325 LYS 325 682 682 LYS LYS A . n A 1 326 GLU 326 683 683 GLU GLU A . n A 1 327 MET 327 684 684 MET MET A . n A 1 328 GLU 328 685 685 GLU GLU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG 1 1001 1001 NAG NAG A . C 3 HOH 1 2001 2001 HOH WAT A . C 3 HOH 2 2002 2002 HOH WAT A . C 3 HOH 3 2003 2003 HOH WAT A . C 3 HOH 4 2004 2004 HOH WAT A . C 3 HOH 5 2005 2005 HOH WAT A . C 3 HOH 6 2006 2006 HOH WAT A . C 3 HOH 7 2007 2007 HOH WAT A . C 3 HOH 8 2008 2008 HOH WAT A . C 3 HOH 9 2009 2009 HOH WAT A . C 3 HOH 10 2010 2010 HOH WAT A . C 3 HOH 11 2011 2011 HOH WAT A . C 3 HOH 12 2012 2012 HOH WAT A . C 3 HOH 13 2013 2013 HOH WAT A . C 3 HOH 14 2014 2014 HOH WAT A . C 3 HOH 15 2015 2015 HOH WAT A . C 3 HOH 16 2016 2016 HOH WAT A . C 3 HOH 17 2017 2017 HOH WAT A . C 3 HOH 18 2018 2018 HOH WAT A . C 3 HOH 19 2019 2019 HOH WAT A . C 3 HOH 20 2020 2020 HOH WAT A . C 3 HOH 21 2021 2021 HOH WAT A . C 3 HOH 22 2022 2022 HOH WAT A . C 3 HOH 23 2023 2023 HOH WAT A . C 3 HOH 24 2024 2024 HOH WAT A . C 3 HOH 25 2025 2025 HOH WAT A . C 3 HOH 26 2026 2026 HOH WAT A . C 3 HOH 27 2027 2027 HOH WAT A . C 3 HOH 28 2028 2028 HOH WAT A . C 3 HOH 29 2029 2029 HOH WAT A . C 3 HOH 30 2030 2030 HOH WAT A . C 3 HOH 31 2031 2031 HOH WAT A . C 3 HOH 32 2032 2032 HOH WAT A . C 3 HOH 33 2033 2033 HOH WAT A . C 3 HOH 34 2034 2034 HOH WAT A . C 3 HOH 35 2035 2035 HOH WAT A . C 3 HOH 36 2036 2036 HOH WAT A . C 3 HOH 37 2037 2037 HOH WAT A . C 3 HOH 38 2038 2038 HOH WAT A . C 3 HOH 39 2039 2039 HOH WAT A . C 3 HOH 40 2040 2040 HOH WAT A . C 3 HOH 41 2041 2041 HOH WAT A . C 3 HOH 42 2042 2042 HOH WAT A . C 3 HOH 43 2043 2043 HOH WAT A . C 3 HOH 44 2044 2044 HOH WAT A . C 3 HOH 45 2045 2045 HOH WAT A . C 3 HOH 46 2046 2046 HOH WAT A . C 3 HOH 47 2047 2047 HOH WAT A . C 3 HOH 48 2048 2048 HOH WAT A . C 3 HOH 49 2049 2049 HOH WAT A . C 3 HOH 50 2050 2050 HOH WAT A . C 3 HOH 51 2051 2051 HOH WAT A . C 3 HOH 52 2052 2052 HOH WAT A . C 3 HOH 53 2053 2053 HOH WAT A . C 3 HOH 54 2054 2054 HOH WAT A . C 3 HOH 55 2055 2055 HOH WAT A . C 3 HOH 56 2056 2056 HOH WAT A . C 3 HOH 57 2057 2057 HOH WAT A . C 3 HOH 58 2058 2058 HOH WAT A . C 3 HOH 59 2059 2059 HOH WAT A . C 3 HOH 60 2060 2060 HOH WAT A . C 3 HOH 61 2061 2061 HOH WAT A . C 3 HOH 62 2062 2062 HOH WAT A . C 3 HOH 63 2063 2063 HOH WAT A . C 3 HOH 64 2064 2064 HOH WAT A . C 3 HOH 65 2065 2065 HOH WAT A . C 3 HOH 66 2066 2066 HOH WAT A . C 3 HOH 67 2067 2067 HOH WAT A . C 3 HOH 68 2068 2068 HOH WAT A . C 3 HOH 69 2069 2069 HOH WAT A . C 3 HOH 70 2070 2070 HOH WAT A . C 3 HOH 71 2071 2071 HOH WAT A . C 3 HOH 72 2072 2072 HOH WAT A . C 3 HOH 73 2073 2073 HOH WAT A . C 3 HOH 74 2074 2074 HOH WAT A . C 3 HOH 75 2075 2075 HOH WAT A . C 3 HOH 76 2076 2076 HOH WAT A . C 3 HOH 77 2077 2077 HOH WAT A . C 3 HOH 78 2078 2078 HOH WAT A . C 3 HOH 79 2079 2079 HOH WAT A . C 3 HOH 80 2080 2080 HOH WAT A . C 3 HOH 81 2081 2081 HOH WAT A . C 3 HOH 82 2082 2082 HOH WAT A . C 3 HOH 83 2083 2083 HOH WAT A . C 3 HOH 84 2084 2084 HOH WAT A . C 3 HOH 85 2085 2085 HOH WAT A . C 3 HOH 86 2086 2086 HOH WAT A . C 3 HOH 87 2087 2087 HOH WAT A . C 3 HOH 88 2088 2088 HOH WAT A . C 3 HOH 89 2089 2089 HOH WAT A . C 3 HOH 90 2090 2090 HOH WAT A . C 3 HOH 91 2091 2091 HOH WAT A . C 3 HOH 92 2092 2092 HOH WAT A . C 3 HOH 93 2093 2093 HOH WAT A . C 3 HOH 94 2094 2094 HOH WAT A . C 3 HOH 95 2095 2095 HOH WAT A . C 3 HOH 96 2096 2096 HOH WAT A . C 3 HOH 97 2097 2097 HOH WAT A . C 3 HOH 98 2098 2098 HOH WAT A . C 3 HOH 99 2099 2099 HOH WAT A . C 3 HOH 100 2100 2100 HOH WAT A . C 3 HOH 101 2101 2101 HOH WAT A . C 3 HOH 102 2102 2102 HOH WAT A . C 3 HOH 103 2103 2103 HOH WAT A . C 3 HOH 104 2104 2104 HOH WAT A . C 3 HOH 105 2105 2105 HOH WAT A . C 3 HOH 106 2106 2106 HOH WAT A . C 3 HOH 107 2107 2107 HOH WAT A . C 3 HOH 108 2108 2108 HOH WAT A . C 3 HOH 109 2109 2109 HOH WAT A . C 3 HOH 110 2110 2110 HOH WAT A . C 3 HOH 111 2111 2111 HOH WAT A . C 3 HOH 112 2112 2112 HOH WAT A . C 3 HOH 113 2113 2113 HOH WAT A . C 3 HOH 114 2114 2114 HOH WAT A . C 3 HOH 115 2115 2115 HOH WAT A . C 3 HOH 116 2116 2116 HOH WAT A . C 3 HOH 117 2117 2117 HOH WAT A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id ASN _pdbx_struct_mod_residue.label_seq_id 140 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id ASN _pdbx_struct_mod_residue.auth_seq_id 497 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id ASN _pdbx_struct_mod_residue.details 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-08-07 2 'Structure model' 1 1 2008-04-28 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2020-07-29 5 'Structure model' 2 1 2021-11-10 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Atomic model' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Non-polymer description' 8 4 'Structure model' 'Structure summary' 9 5 'Structure model' Advisory 10 5 'Structure model' 'Database references' 11 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp 3 4 'Structure model' database_PDB_caveat 4 4 'Structure model' entity 5 4 'Structure model' pdbx_chem_comp_identifier 6 4 'Structure model' pdbx_entity_nonpoly 7 4 'Structure model' pdbx_nonpoly_scheme 8 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 9 4 'Structure model' pdbx_validate_chiral 10 4 'Structure model' struct_conn 11 4 'Structure model' struct_site 12 4 'Structure model' struct_site_gen 13 5 'Structure model' chem_comp 14 5 'Structure model' database_2 15 5 'Structure model' pdbx_unobs_or_zero_occ_atoms 16 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.B_iso_or_equiv' 2 4 'Structure model' '_atom_site.Cartn_x' 3 4 'Structure model' '_atom_site.Cartn_y' 4 4 'Structure model' '_atom_site.Cartn_z' 5 4 'Structure model' '_atom_site.auth_atom_id' 6 4 'Structure model' '_atom_site.auth_comp_id' 7 4 'Structure model' '_atom_site.label_atom_id' 8 4 'Structure model' '_atom_site.label_comp_id' 9 4 'Structure model' '_atom_site.type_symbol' 10 4 'Structure model' '_chem_comp.id' 11 4 'Structure model' '_chem_comp.name' 12 4 'Structure model' '_chem_comp.type' 13 4 'Structure model' '_entity.pdbx_description' 14 4 'Structure model' '_pdbx_entity_nonpoly.comp_id' 15 4 'Structure model' '_pdbx_entity_nonpoly.name' 16 4 'Structure model' '_pdbx_nonpoly_scheme.mon_id' 17 4 'Structure model' '_pdbx_nonpoly_scheme.pdb_mon_id' 18 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 19 4 'Structure model' '_struct_conn.pdbx_role' 20 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 21 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 22 5 'Structure model' '_chem_comp.pdbx_synonyms' 23 5 'Structure model' '_database_2.pdbx_DOI' 24 5 'Structure model' '_database_2.pdbx_database_accession' 25 5 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MOSFLM 'data reduction' . ? 1 SCALA 'data scaling' . ? 2 AMoRE phasing . ? 3 CNS refinement 1.1 ? 4 CCP4 'data scaling' '(SCALA)' ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS A 359 ? ? -74.86 -137.37 2 1 ASP A 369 ? ? -149.64 -157.55 3 1 THR A 375 ? ? -36.17 125.74 4 1 ASN A 379 ? ? -85.81 34.61 5 1 TYR A 381 ? ? -30.91 144.55 6 1 LYS A 382 ? ? 73.07 -5.58 7 1 CYS A 412 ? ? -54.24 93.86 8 1 GLU A 421 ? ? -44.86 17.74 9 1 GLN A 422 ? ? -131.05 -47.43 10 1 GLU A 425 ? ? 81.28 -19.04 11 1 PRO A 428 ? ? -63.43 -179.84 12 1 LYS A 436 ? ? -176.32 68.13 13 1 ASN A 439 ? ? -160.59 59.18 14 1 PRO A 440 ? ? -66.88 -163.63 15 1 GLN A 451 ? ? -103.34 -162.16 16 1 MET A 455 ? ? -36.81 110.56 17 1 ASN A 465 ? ? -159.59 66.30 18 1 ILE A 466 ? ? -90.64 -92.03 19 1 HIS A 467 ? ? -104.55 62.58 20 1 ARG A 478 ? ? -152.69 42.64 21 1 GLU A 491 ? ? -46.22 158.30 22 1 ALA A 498 ? ? -178.44 93.96 23 1 HIS A 506 ? ? 176.85 172.20 24 1 ASP A 563 ? ? -145.76 -16.32 25 1 TYR A 568 ? ? -105.51 51.76 26 1 PRO A 600 ? ? -48.77 -18.03 27 1 ALA A 623 ? ? -177.37 137.84 28 1 PRO A 626 ? ? -49.54 -11.03 29 1 LYS A 629 ? ? 65.68 -140.69 30 1 ALA A 637 ? ? 154.69 121.18 31 1 ARG A 650 ? ? -104.17 -134.62 32 1 TRP A 651 ? ? -172.67 116.10 33 1 SER A 658 ? ? -103.01 -153.64 34 1 ILE A 661 ? ? -130.79 -32.76 # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id C1 _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id A _pdbx_validate_chiral.auth_comp_id NAG _pdbx_validate_chiral.auth_seq_id 1001 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details 'WRONG HAND' _pdbx_validate_chiral.omega . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A GLN 407 ? CG ? A GLN 50 CG 2 1 Y 0 A GLN 407 ? CD ? A GLN 50 CD 3 1 Y 0 A GLN 407 ? OE1 ? A GLN 50 OE1 4 1 Y 0 A GLN 407 ? NE2 ? A GLN 50 NE2 5 1 Y 0 A GLU 421 ? CG ? A GLU 64 CG 6 1 Y 0 A GLU 421 ? CD ? A GLU 64 CD 7 1 Y 0 A GLU 421 ? OE1 ? A GLU 64 OE1 8 1 Y 0 A GLU 421 ? OE2 ? A GLU 64 OE2 9 1 Y 0 A GLN 422 ? CG ? A GLN 65 CG 10 1 Y 0 A GLN 422 ? CD ? A GLN 65 CD 11 1 Y 0 A GLN 422 ? OE1 ? A GLN 65 OE1 12 1 Y 0 A GLN 422 ? NE2 ? A GLN 65 NE2 13 1 Y 0 A LYS 423 ? CB ? A LYS 66 CB 14 1 Y 0 A LYS 423 ? NZ ? A LYS 66 NZ 15 1 Y 0 A GLU 491 ? CB ? A GLU 134 CB 16 1 Y 0 A GLU 491 ? CG ? A GLU 134 CG 17 1 Y 0 A GLU 491 ? CD ? A GLU 134 CD 18 1 Y 0 A GLU 491 ? OE1 ? A GLU 134 OE1 19 1 Y 0 A GLU 491 ? OE2 ? A GLU 134 OE2 20 1 Y 0 A LYS 629 ? CG ? A LYS 272 CG 21 1 Y 0 A LYS 629 ? CD ? A LYS 272 CD 22 1 Y 0 A LYS 629 ? CE ? A LYS 272 CE 23 1 Y 0 A LYS 629 ? NZ ? A LYS 272 NZ 24 1 Y 0 A ASN 647 ? CB ? A ASN 290 CB 25 1 Y 0 A ASN 647 ? CG ? A ASN 290 CG 26 1 Y 0 A ASN 647 ? OD1 ? A ASN 290 OD1 27 1 Y 0 A ASN 647 ? ND2 ? A ASN 290 ND2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ARG 399 ? A ARG 42 2 1 Y 1 A ALA 400 ? A ALA 43 3 1 Y 1 A GLY 401 ? A GLY 44 4 1 Y 1 A SER 402 ? A SER 45 5 1 Y 1 A ARG 403 ? A ARG 46 6 1 Y 1 A GLU 404 ? A GLU 47 7 1 Y 1 A SER 405 ? A SER 48 8 1 Y 1 A GLU 406 ? A GLU 49 9 1 Y 1 A GLN 443 ? A GLN 86 10 1 Y 1 A ARG 444 ? A ARG 87 11 1 Y 1 A GLN 445 ? A GLN 88 12 1 Y 1 A ARG 446 ? A ARG 89 13 1 Y 1 A VAL 581 ? A VAL 224 14 1 Y 1 A MET 582 ? A MET 225 15 1 Y 1 A GLU 583 ? A GLU 226 16 1 Y 1 A GLU 584 ? A GLU 227 17 1 Y 1 A LYS 585 ? A LYS 228 18 1 Y 1 A ILE 586 ? A ILE 229 19 1 Y 1 A ARG 608 ? A ARG 251 20 1 Y 1 A GLY 609 ? A GLY 252 21 1 Y 1 A LYS 610 ? A LYS 253 22 1 Y 1 A ASN 611 ? A ASN 254 23 1 Y 1 A ARG 612 ? A ARG 255 24 1 Y 1 A MET 613 ? A MET 256 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 3 water HOH #