data_1N1O # _entry.id 1N1O # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1N1O pdb_00001n1o 10.2210/pdb1n1o/pdb NDB BD0060 ? ? RCSB RCSB017407 ? ? WWPDB D_1000017407 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-11-15 2 'Structure model' 1 1 2008-04-28 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-11 5 'Structure model' 1 4 2019-07-24 6 'Structure model' 1 5 2024-02-14 7 'Structure model' 1 6 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Refinement description' 7 6 'Structure model' 'Data collection' 8 6 'Structure model' 'Database references' 9 6 'Structure model' 'Derived calculations' 10 7 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' software 3 5 'Structure model' struct_conn 4 6 'Structure model' chem_comp_atom 5 6 'Structure model' chem_comp_bond 6 6 'Structure model' database_2 7 6 'Structure model' pdbx_struct_conn_angle 8 6 'Structure model' struct_conn 9 6 'Structure model' struct_site 10 7 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_software.classification' 2 5 'Structure model' '_software.name' 3 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 6 'Structure model' '_database_2.pdbx_DOI' 5 6 'Structure model' '_database_2.pdbx_database_accession' 6 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 7 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 8 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 9 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 10 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 12 6 'Structure model' '_pdbx_struct_conn_angle.value' 13 6 'Structure model' '_struct_conn.pdbx_dist_value' 14 6 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 15 6 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 16 6 'Structure model' '_struct_conn.ptnr1_label_asym_id' 17 6 'Structure model' '_struct_conn.ptnr1_label_atom_id' 18 6 'Structure model' '_struct_conn.ptnr1_label_comp_id' 19 6 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 20 6 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 21 6 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 22 6 'Structure model' '_struct_conn.ptnr2_label_asym_id' 23 6 'Structure model' '_struct_conn.ptnr2_label_atom_id' 24 6 'Structure model' '_struct_conn.ptnr2_label_comp_id' 25 6 'Structure model' '_struct_site.pdbx_auth_asym_id' 26 6 'Structure model' '_struct_site.pdbx_auth_comp_id' 27 6 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1N1O _pdbx_database_status.recvd_initial_deposition_date 2002-10-18 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wilds, C.J.' 1 'Wawrzak, Z.' 2 'Krishnamurthy, R.' 3 'Eschenmoser, A.' 4 'Egli, M.' 5 # _citation.id primary _citation.title ;Crystal Structure of a B-Form DNA Duplex Containing (L)-alpha-Threofuranosyl (3'-->2') Nucleosides: A Four-Carbon Sugar Is Easily Accommodated into the Backbone of DNA ; _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 124 _citation.page_first 13716 _citation.page_last 13721 _citation.year 2002 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12431101 _citation.pdbx_database_id_DOI 10.1021/ja0207807 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wilds, C.J.' 1 ? primary 'Wawrzak, Z.' 2 ? primary 'Krishnamurthy, R.' 3 ? primary 'Eschenmoser, A.' 4 ? primary 'Egli, M.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*GP*CP*GP*AP*AP*(TFT)P*TP*CP*GP*CP*G)-3'" 3649.366 2 ? ? ? 'Dickerson-Drew dodecamer duplex' 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 water nat water 18.015 197 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DA)(DA)(TFT)(DT)(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGAATTCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DA n 1 6 DA n 1 7 TFT n 1 8 DT n 1 9 DC n 1 10 DG n 1 11 DC n 1 12 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'solid phase oligonucleotide synthesis was used.' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 TFT 'DNA linking' n "(L)-ALPHA-THREOFURANOSYL-THYMINE-3'-MONOPHOSPHATE" ? 'C9 H13 N2 O8 P' 308.182 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC CYT A . n A 1 2 DG 2 2 2 DG GUA A . n A 1 3 DC 3 3 3 DC CYT A . n A 1 4 DG 4 4 4 DG GUA A . n A 1 5 DA 5 5 5 DA ADE A . n A 1 6 DA 6 6 6 DA ADE A . n A 1 7 TFT 7 7 7 TFT THT A . n A 1 8 DT 8 8 8 DT THY A . n A 1 9 DC 9 9 9 DC CYT A . n A 1 10 DG 10 10 10 DG GUA A . n A 1 11 DC 11 11 11 DC CYT A . n A 1 12 DG 12 12 12 DG GUA A . n B 1 1 DC 1 113 113 DC CYT B . n B 1 2 DG 2 114 114 DG GUA B . n B 1 3 DC 3 115 115 DC CYT B . n B 1 4 DG 4 116 116 DG GUA B . n B 1 5 DA 5 117 117 DA ADE B . n B 1 6 DA 6 118 118 DA ADE B . n B 1 7 TFT 7 119 119 TFT THT B . n B 1 8 DT 8 120 120 DT THY B . n B 1 9 DC 9 121 121 DC CYT B . n B 1 10 DG 10 122 122 DG GUA B . n B 1 11 DC 11 123 123 DC CYT B . n B 1 12 DG 12 124 124 DG GUA B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 901 901 MG MG A . D 3 HOH 1 701 701 HOH TIP A . D 3 HOH 2 702 702 HOH TIP A . D 3 HOH 3 703 703 HOH TIP A . D 3 HOH 4 705 705 HOH TIP A . D 3 HOH 5 707 707 HOH TIP A . D 3 HOH 6 709 709 HOH TIP A . D 3 HOH 7 710 710 HOH TIP A . D 3 HOH 8 711 711 HOH TIP A . D 3 HOH 9 716 716 HOH TIP A . D 3 HOH 10 718 718 HOH TIP A . D 3 HOH 11 719 719 HOH TIP A . D 3 HOH 12 721 721 HOH TIP A . D 3 HOH 13 723 723 HOH TIP A . D 3 HOH 14 724 724 HOH TIP A . D 3 HOH 15 725 725 HOH TIP A . D 3 HOH 16 726 726 HOH TIP A . D 3 HOH 17 728 728 HOH TIP A . D 3 HOH 18 731 731 HOH TIP A . D 3 HOH 19 734 734 HOH TIP A . D 3 HOH 20 737 737 HOH TIP A . D 3 HOH 21 740 740 HOH TIP A . D 3 HOH 22 743 743 HOH TIP A . D 3 HOH 23 744 744 HOH TIP A . D 3 HOH 24 745 745 HOH TIP A . D 3 HOH 25 747 747 HOH TIP A . D 3 HOH 26 750 750 HOH TIP A . D 3 HOH 27 751 751 HOH TIP A . D 3 HOH 28 754 754 HOH TIP A . D 3 HOH 29 757 757 HOH TIP A . D 3 HOH 30 764 764 HOH TIP A . D 3 HOH 31 766 766 HOH TIP A . D 3 HOH 32 773 773 HOH TIP A . D 3 HOH 33 775 775 HOH TIP A . D 3 HOH 34 778 778 HOH TIP A . D 3 HOH 35 780 780 HOH TIP A . D 3 HOH 36 783 783 HOH TIP A . D 3 HOH 37 788 788 HOH TIP A . D 3 HOH 38 789 789 HOH TIP A . D 3 HOH 39 790 790 HOH TIP A . D 3 HOH 40 791 791 HOH TIP A . D 3 HOH 41 796 796 HOH TIP A . D 3 HOH 42 800 800 HOH TIP A . D 3 HOH 43 801 801 HOH TIP A . D 3 HOH 44 802 802 HOH TIP A . D 3 HOH 45 805 805 HOH TIP A . D 3 HOH 46 808 808 HOH TIP A . D 3 HOH 47 809 809 HOH TIP A . D 3 HOH 48 814 814 HOH TIP A . D 3 HOH 49 815 815 HOH TIP A . D 3 HOH 50 817 817 HOH TIP A . D 3 HOH 51 820 820 HOH TIP A . D 3 HOH 52 821 821 HOH TIP A . D 3 HOH 53 824 824 HOH TIP A . D 3 HOH 54 830 830 HOH TIP A . D 3 HOH 55 831 831 HOH TIP A . D 3 HOH 56 833 833 HOH TIP A . D 3 HOH 57 834 834 HOH TIP A . D 3 HOH 58 838 838 HOH TIP A . D 3 HOH 59 839 839 HOH TIP A . D 3 HOH 60 840 840 HOH TIP A . D 3 HOH 61 841 841 HOH TIP A . D 3 HOH 62 849 849 HOH TIP A . D 3 HOH 63 851 851 HOH TIP A . D 3 HOH 64 852 852 HOH TIP A . D 3 HOH 65 860 860 HOH TIP A . D 3 HOH 66 861 861 HOH TIP A . D 3 HOH 67 863 863 HOH TIP A . D 3 HOH 68 866 866 HOH TIP A . D 3 HOH 69 867 867 HOH TIP A . D 3 HOH 70 869 869 HOH TIP A . D 3 HOH 71 871 871 HOH TIP A . D 3 HOH 72 872 872 HOH TIP A . D 3 HOH 73 873 873 HOH TIP A . D 3 HOH 74 875 875 HOH TIP A . D 3 HOH 75 876 876 HOH TIP A . D 3 HOH 76 878 878 HOH TIP A . D 3 HOH 77 879 879 HOH TIP A . D 3 HOH 78 882 882 HOH TIP A . D 3 HOH 79 887 887 HOH TIP A . D 3 HOH 80 888 888 HOH TIP A . D 3 HOH 81 890 890 HOH TIP A . D 3 HOH 82 892 892 HOH TIP A . D 3 HOH 83 893 893 HOH TIP A . D 3 HOH 84 898 898 HOH TIP A . D 3 HOH 85 900 900 HOH TIP A . D 3 HOH 86 902 902 HOH TIP A . D 3 HOH 87 903 903 HOH TIP A . D 3 HOH 88 905 905 HOH TIP A . D 3 HOH 89 906 906 HOH TIP A . D 3 HOH 90 911 911 HOH TIP A . D 3 HOH 91 912 912 HOH TIP A . D 3 HOH 92 913 913 HOH TIP A . D 3 HOH 93 914 914 HOH TIP A . D 3 HOH 94 917 917 HOH TIP A . D 3 HOH 95 918 918 HOH TIP A . D 3 HOH 96 920 920 HOH TIP A . D 3 HOH 97 924 924 HOH TIP A . D 3 HOH 98 925 925 HOH TIP A . D 3 HOH 99 927 927 HOH TIP A . D 3 HOH 100 931 931 HOH TIP A . D 3 HOH 101 936 936 HOH TIP A . D 3 HOH 102 937 937 HOH TIP A . D 3 HOH 103 939 939 HOH TIP A . D 3 HOH 104 943 943 HOH TIP A . D 3 HOH 105 949 949 HOH TIP A . D 3 HOH 106 950 950 HOH TIP A . E 3 HOH 1 706 706 HOH TIP B . E 3 HOH 2 708 708 HOH TIP B . E 3 HOH 3 712 712 HOH TIP B . E 3 HOH 4 713 713 HOH TIP B . E 3 HOH 5 714 714 HOH TIP B . E 3 HOH 6 715 715 HOH TIP B . E 3 HOH 7 717 717 HOH TIP B . E 3 HOH 8 720 720 HOH TIP B . E 3 HOH 9 727 727 HOH TIP B . E 3 HOH 10 729 729 HOH TIP B . E 3 HOH 11 730 730 HOH TIP B . E 3 HOH 12 733 733 HOH TIP B . E 3 HOH 13 735 735 HOH TIP B . E 3 HOH 14 738 738 HOH TIP B . E 3 HOH 15 741 741 HOH TIP B . E 3 HOH 16 742 742 HOH TIP B . E 3 HOH 17 746 746 HOH TIP B . E 3 HOH 18 748 748 HOH TIP B . E 3 HOH 19 749 749 HOH TIP B . E 3 HOH 20 753 753 HOH TIP B . E 3 HOH 21 755 755 HOH TIP B . E 3 HOH 22 758 758 HOH TIP B . E 3 HOH 23 759 759 HOH TIP B . E 3 HOH 24 760 760 HOH TIP B . E 3 HOH 25 761 761 HOH TIP B . E 3 HOH 26 763 763 HOH TIP B . E 3 HOH 27 765 765 HOH TIP B . E 3 HOH 28 769 769 HOH TIP B . E 3 HOH 29 772 772 HOH TIP B . E 3 HOH 30 774 774 HOH TIP B . E 3 HOH 31 776 776 HOH TIP B . E 3 HOH 32 777 777 HOH TIP B . E 3 HOH 33 782 782 HOH TIP B . E 3 HOH 34 784 784 HOH TIP B . E 3 HOH 35 787 787 HOH TIP B . E 3 HOH 36 792 792 HOH TIP B . E 3 HOH 37 797 797 HOH TIP B . E 3 HOH 38 798 798 HOH TIP B . E 3 HOH 39 799 799 HOH TIP B . E 3 HOH 40 803 803 HOH TIP B . E 3 HOH 41 804 804 HOH TIP B . E 3 HOH 42 806 806 HOH TIP B . E 3 HOH 43 807 807 HOH TIP B . E 3 HOH 44 810 810 HOH TIP B . E 3 HOH 45 811 811 HOH TIP B . E 3 HOH 46 812 812 HOH TIP B . E 3 HOH 47 813 813 HOH TIP B . E 3 HOH 48 819 819 HOH TIP B . E 3 HOH 49 822 822 HOH TIP B . E 3 HOH 50 823 823 HOH TIP B . E 3 HOH 51 832 832 HOH TIP B . E 3 HOH 52 835 835 HOH TIP B . E 3 HOH 53 837 837 HOH TIP B . E 3 HOH 54 843 843 HOH TIP B . E 3 HOH 55 846 846 HOH TIP B . E 3 HOH 56 847 847 HOH TIP B . E 3 HOH 57 848 848 HOH TIP B . E 3 HOH 58 850 850 HOH TIP B . E 3 HOH 59 854 854 HOH TIP B . E 3 HOH 60 855 855 HOH TIP B . E 3 HOH 61 858 858 HOH TIP B . E 3 HOH 62 859 859 HOH TIP B . E 3 HOH 63 862 862 HOH TIP B . E 3 HOH 64 865 865 HOH TIP B . E 3 HOH 65 868 868 HOH TIP B . E 3 HOH 66 870 870 HOH TIP B . E 3 HOH 67 874 874 HOH TIP B . E 3 HOH 68 877 877 HOH TIP B . E 3 HOH 69 880 880 HOH TIP B . E 3 HOH 70 884 884 HOH TIP B . E 3 HOH 71 885 885 HOH TIP B . E 3 HOH 72 889 889 HOH TIP B . E 3 HOH 73 891 891 HOH TIP B . E 3 HOH 74 895 895 HOH TIP B . E 3 HOH 75 899 899 HOH TIP B . E 3 HOH 76 907 907 HOH TIP B . E 3 HOH 77 908 908 HOH TIP B . E 3 HOH 78 909 909 HOH TIP B . E 3 HOH 79 910 910 HOH TIP B . E 3 HOH 80 916 916 HOH TIP B . E 3 HOH 81 919 919 HOH TIP B . E 3 HOH 82 921 921 HOH TIP B . E 3 HOH 83 922 922 HOH TIP B . E 3 HOH 84 928 928 HOH TIP B . E 3 HOH 85 933 933 HOH TIP B . E 3 HOH 86 935 935 HOH TIP B . E 3 HOH 87 938 938 HOH TIP B . E 3 HOH 88 941 941 HOH TIP B . E 3 HOH 89 942 942 HOH TIP B . E 3 HOH 90 945 945 HOH TIP B . E 3 HOH 91 952 952 HOH TIP B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELXL-97 refinement . ? 1 SCALEPACK 'data scaling' . ? 2 CNS refinement . ? 3 MAR345 'data collection' . ? 4 CNS phasing . ? 5 # _cell.entry_id 1N1O _cell.length_a 25.277 _cell.length_b 40.080 _cell.length_c 65.860 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1N1O _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 19 _symmetry.cell_setting ? # _exptl.entry_id 1N1O _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.75 _exptl_crystal.density_percent_sol 29.04 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pdbx_details ;oligonucleotide, sodium cacodylate, magnesium acetate, spermine tetrahydrochloride, 2-methyl-2,4-pentanediol (MPD), pH 7, VAPOR DIFFUSION, SITTING DROP, temperature 298K ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 oligonucleotide ? ? ? 1 2 1 'sodium cacodylate' ? ? ? 1 3 1 'magnesium acetate' ? ? ? 1 4 1 'spermine tetrahydrochloride' ? ? ? 1 5 1 MPD ? ? ? 1 6 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 120 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2001-02-20 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.978 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 5ID-B' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 5ID-B _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.978 # _reflns.entry_id 1N1O _reflns.observed_criterion_sigma_F 2 _reflns.observed_criterion_sigma_I 1 _reflns.d_resolution_high 1.20 _reflns.d_resolution_low 20.0 _reflns.number_all 21360 _reflns.number_obs 21311 _reflns.percent_possible_obs 99.2 _reflns.pdbx_Rmerge_I_obs 0.037 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.20 _reflns_shell.d_res_low 1.24 _reflns_shell.percent_possible_all 98.2 _reflns_shell.Rmerge_I_obs 0.327 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1N1O _refine.ls_d_res_high 1.20 _refine.ls_d_res_low 20 _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 21311 _refine.ls_number_reflns_obs 21311 _refine.ls_number_reflns_R_free ? _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_work 0.16 _refine.ls_R_factor_R_free ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'B-form DNA (native Dickerson-Drew dodecamer)' _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 484 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 197 _refine_hist.number_atoms_total 682 _refine_hist.d_res_high 1.20 _refine_hist.d_res_low 20 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.014 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 1N1O _pdbx_refine.R_factor_all_no_cutoff 0.16 _pdbx_refine.R_factor_obs_no_cutoff 0.16 _pdbx_refine.number_reflns_obs_no_cutoff 21311 _pdbx_refine.free_R_factor_no_cutoff 0.2 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 2130 _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 5.0 _pdbx_refine.R_factor_all_4sig_cutoff 0.156 _pdbx_refine.R_factor_obs_4sig_cutoff 0.156 _pdbx_refine.number_reflns_obs_4sig_cutoff 18649 _pdbx_refine.free_R_factor_4sig_cutoff 0.198 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 1866 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 5.0 _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _database_PDB_matrix.entry_id 1N1O _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1N1O _struct.title ;Crystal Structure of a B-form DNA Duplex Containing (L)-alpha-threofuranosyl (3'-2') Nucleosides: A Four-Carbon Sugar is Easily Accommodated into the Backbone of DNA ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1N1O _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'B-DNA, hydrogen bonding, nucleic acid etiology, tetrose, four-carbon sugar, nucleic acid analogue, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1N1O _struct_ref.pdbx_db_accession 1N1O _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1N1O A 1 ? 12 ? 1N1O 1 ? 12 ? 1 12 2 1 1N1O B 1 ? 12 ? 1N1O 113 ? 124 ? 113 124 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DA 6 "O3'" ? ? ? 1_555 A TFT 7 P ? ? A DA 6 A TFT 7 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale2 covale one ? A TFT 7 O2T ? ? ? 1_555 A DT 8 P ? ? A TFT 7 A DT 8 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale3 covale both ? B DA 6 "O3'" ? ? ? 1_555 B TFT 7 P ? ? B DA 118 B TFT 119 1_555 ? ? ? ? ? ? ? 1.583 ? ? covale4 covale one ? B TFT 7 O2T ? ? ? 1_555 B DT 8 P ? ? B TFT 119 B DT 120 1_555 ? ? ? ? ? ? ? 1.548 ? ? metalc1 metalc ? ? D HOH . O ? ? ? 1_555 C MG . MG ? ? A HOH 702 A MG 901 1_555 ? ? ? ? ? ? ? 2.068 ? ? metalc2 metalc ? ? D HOH . O ? ? ? 1_555 C MG . MG ? ? A HOH 705 A MG 901 1_555 ? ? ? ? ? ? ? 2.050 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 901 B HOH 706 1_555 ? ? ? ? ? ? ? 2.119 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 901 B HOH 708 1_555 ? ? ? ? ? ? ? 2.056 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 901 B HOH 715 1_555 ? ? ? ? ? ? ? 2.066 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 901 B HOH 720 1_555 ? ? ? ? ? ? ? 2.031 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 4 B DC 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 4 B DC 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 4 B DC 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B TFT 7 N3 ? ? A DA 6 B TFT 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B TFT 7 O4 ? ? A DA 6 B TFT 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A TFT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A TFT 7 B DA 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A TFT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A TFT 7 B DA 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? D HOH . ? A HOH 702 ? 1_555 MG ? C MG . ? A MG 901 ? 1_555 O ? D HOH . ? A HOH 705 ? 1_555 92.4 ? 2 O ? D HOH . ? A HOH 702 ? 1_555 MG ? C MG . ? A MG 901 ? 1_555 O ? E HOH . ? B HOH 706 ? 1_555 174.8 ? 3 O ? D HOH . ? A HOH 705 ? 1_555 MG ? C MG . ? A MG 901 ? 1_555 O ? E HOH . ? B HOH 706 ? 1_555 88.6 ? 4 O ? D HOH . ? A HOH 702 ? 1_555 MG ? C MG . ? A MG 901 ? 1_555 O ? E HOH . ? B HOH 708 ? 1_555 94.0 ? 5 O ? D HOH . ? A HOH 705 ? 1_555 MG ? C MG . ? A MG 901 ? 1_555 O ? E HOH . ? B HOH 708 ? 1_555 86.2 ? 6 O ? E HOH . ? B HOH 706 ? 1_555 MG ? C MG . ? A MG 901 ? 1_555 O ? E HOH . ? B HOH 708 ? 1_555 91.1 ? 7 O ? D HOH . ? A HOH 702 ? 1_555 MG ? C MG . ? A MG 901 ? 1_555 O ? E HOH . ? B HOH 715 ? 1_555 89.9 ? 8 O ? D HOH . ? A HOH 705 ? 1_555 MG ? C MG . ? A MG 901 ? 1_555 O ? E HOH . ? B HOH 715 ? 1_555 91.5 ? 9 O ? E HOH . ? B HOH 706 ? 1_555 MG ? C MG . ? A MG 901 ? 1_555 O ? E HOH . ? B HOH 715 ? 1_555 85.1 ? 10 O ? E HOH . ? B HOH 708 ? 1_555 MG ? C MG . ? A MG 901 ? 1_555 O ? E HOH . ? B HOH 715 ? 1_555 175.5 ? 11 O ? D HOH . ? A HOH 702 ? 1_555 MG ? C MG . ? A MG 901 ? 1_555 O ? E HOH . ? B HOH 720 ? 1_555 88.6 ? 12 O ? D HOH . ? A HOH 705 ? 1_555 MG ? C MG . ? A MG 901 ? 1_555 O ? E HOH . ? B HOH 720 ? 1_555 174.9 ? 13 O ? E HOH . ? B HOH 706 ? 1_555 MG ? C MG . ? A MG 901 ? 1_555 O ? E HOH . ? B HOH 720 ? 1_555 90.8 ? 14 O ? E HOH . ? B HOH 708 ? 1_555 MG ? C MG . ? A MG 901 ? 1_555 O ? E HOH . ? B HOH 720 ? 1_555 88.8 ? 15 O ? E HOH . ? B HOH 715 ? 1_555 MG ? C MG . ? A MG 901 ? 1_555 O ? E HOH . ? B HOH 720 ? 1_555 93.5 ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id MG _struct_site.pdbx_auth_seq_id 901 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE MG A 901' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH D . ? HOH A 702 . ? 1_555 ? 2 AC1 6 HOH D . ? HOH A 705 . ? 1_555 ? 3 AC1 6 HOH E . ? HOH B 706 . ? 1_555 ? 4 AC1 6 HOH E . ? HOH B 708 . ? 1_555 ? 5 AC1 6 HOH E . ? HOH B 715 . ? 1_555 ? 6 AC1 6 HOH E . ? HOH B 720 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? 1.496 1.420 0.076 0.011 N 2 1 "C2'" A DC 3 ? ? "C1'" A DC 3 ? ? 1.455 1.518 -0.063 0.010 N 3 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? 1.529 1.420 0.109 0.011 N 4 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? 1.518 1.420 0.098 0.011 N 5 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? 1.497 1.420 0.077 0.011 N 6 1 "C2'" A DC 9 ? ? "C1'" A DC 9 ? ? 1.430 1.518 -0.088 0.010 N 7 1 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? 1.569 1.420 0.149 0.011 N 8 1 "C2'" A DC 11 ? ? "C1'" A DC 11 ? ? 1.449 1.518 -0.069 0.010 N 9 1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? 1.546 1.420 0.126 0.011 N 10 1 "C2'" A DG 12 ? ? "C1'" A DG 12 ? ? 1.445 1.518 -0.073 0.010 N 11 1 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? 1.512 1.420 0.092 0.011 N 12 1 "O4'" B DC 113 ? ? "C1'" B DC 113 ? ? 1.499 1.420 0.079 0.011 N 13 1 "O4'" B DC 115 ? ? "C1'" B DC 115 ? ? 1.524 1.420 0.104 0.011 N 14 1 "C2'" B DA 117 ? ? "C1'" B DA 117 ? ? 1.458 1.518 -0.060 0.010 N 15 1 "O4'" B DA 117 ? ? "C1'" B DA 117 ? ? 1.543 1.420 0.123 0.011 N 16 1 "O4'" B DA 118 ? ? "C1'" B DA 118 ? ? 1.499 1.420 0.079 0.011 N 17 1 "C2'" B DT 120 ? ? "C1'" B DT 120 ? ? 1.452 1.518 -0.066 0.010 N 18 1 "O4'" B DT 120 ? ? "C1'" B DT 120 ? ? 1.519 1.420 0.099 0.011 N 19 1 "C2'" B DC 121 ? ? "C1'" B DC 121 ? ? 1.439 1.518 -0.079 0.010 N 20 1 "O4'" B DC 121 ? ? "C1'" B DC 121 ? ? 1.549 1.420 0.129 0.011 N 21 1 "C2'" B DC 123 ? ? "C1'" B DC 123 ? ? 1.415 1.518 -0.103 0.010 N 22 1 "O4'" B DC 123 ? ? "C1'" B DC 123 ? ? 1.557 1.420 0.137 0.011 N 23 1 "C2'" B DG 124 ? ? "C1'" B DG 124 ? ? 1.424 1.518 -0.094 0.010 N 24 1 "O4'" B DG 124 ? ? "C1'" B DG 124 ? ? 1.552 1.420 0.132 0.011 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? 110.01 106.00 4.01 0.60 N 2 1 N1 A DC 1 ? ? "C1'" A DC 1 ? ? "C2'" A DC 1 ? ? 123.26 114.30 8.96 1.40 N 3 1 OP1 A DG 2 ? ? P A DG 2 ? ? OP2 A DG 2 ? ? 128.75 119.60 9.15 1.50 N 4 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 102.45 108.00 -5.55 0.70 N 5 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.12 108.30 1.82 0.30 N 6 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 103.74 108.00 -4.26 0.70 N 7 1 N1 A DC 9 ? ? "C1'" A DC 9 ? ? "C2'" A DC 9 ? ? 126.23 114.30 11.93 1.40 N 8 1 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 97.15 108.00 -10.85 0.70 N 9 1 N1 A DC 11 ? ? "C1'" A DC 11 ? ? "C2'" A DC 11 ? ? 125.18 114.30 10.88 1.40 N 10 1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 98.92 108.00 -9.08 0.70 N 11 1 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 99.93 108.00 -8.07 0.70 N 12 1 "O4'" B DC 113 ? ? "C1'" B DC 113 ? ? N1 B DC 113 ? ? 103.54 108.00 -4.46 0.70 N 13 1 "O4'" B DG 114 ? ? "C1'" B DG 114 ? ? N9 B DG 114 ? ? 103.79 108.00 -4.21 0.70 N 14 1 "O4'" B DC 115 ? ? "C1'" B DC 115 ? ? N1 B DC 115 ? ? 100.73 108.00 -7.27 0.70 N 15 1 "O4'" B DG 116 ? ? "C1'" B DG 116 ? ? N9 B DG 116 ? ? 113.03 108.30 4.73 0.30 N 16 1 "C3'" B DG 116 ? ? "O3'" B DG 116 ? ? P B DA 117 ? ? 128.93 119.70 9.23 1.20 Y 17 1 "O4'" B DA 117 ? ? "C1'" B DA 117 ? ? N9 B DA 117 ? ? 100.77 108.00 -7.23 0.70 N 18 1 "C3'" B DA 118 ? ? "O3'" B DA 118 ? ? P B TFT 119 ? ? 128.15 119.70 8.45 1.20 Y 19 1 "O5'" B DT 120 ? ? "C5'" B DT 120 ? ? "C4'" B DT 120 ? ? 102.56 109.40 -6.84 0.80 N 20 1 "O4'" B DT 120 ? ? "C1'" B DT 120 ? ? N1 B DT 120 ? ? 100.25 108.00 -7.75 0.70 N 21 1 "C1'" B DC 121 ? ? "O4'" B DC 121 ? ? "C4'" B DC 121 ? ? 101.45 110.10 -8.65 1.00 N 22 1 N1 B DC 121 ? ? "C1'" B DC 121 ? ? "C2'" B DC 121 ? ? 123.74 114.30 9.44 1.40 N 23 1 "O4'" B DC 121 ? ? "C1'" B DC 121 ? ? N1 B DC 121 ? ? 99.97 108.00 -8.03 0.70 N 24 1 N1 B DC 123 ? ? "C1'" B DC 123 ? ? "C2'" B DC 123 ? ? 123.59 114.30 9.29 1.40 N 25 1 "O4'" B DC 123 ? ? "C1'" B DC 123 ? ? N1 B DC 123 ? ? 98.87 108.00 -9.13 0.70 N 26 1 N9 B DG 124 ? ? "C1'" B DG 124 ? ? "C2'" B DG 124 ? ? 123.44 114.30 9.14 1.40 N 27 1 "O4'" B DG 124 ? ? "C1'" B DG 124 ? ? N9 B DG 124 ? ? 99.77 108.00 -8.23 0.70 N # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A TFT 7 A TFT 7 ? DT ? 2 B TFT 7 B TFT 119 ? DT ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 MG MG MG N N 147 TFT P P N N 148 TFT OP1 O N N 149 TFT OP2 O N N 150 TFT O3T O N N 151 TFT N1 N N N 152 TFT C6 C N N 153 TFT C2 C N N 154 TFT O2 O N N 155 TFT N3 N N N 156 TFT C4 C N N 157 TFT O4 O N N 158 TFT C5 C N N 159 TFT C5M C N N 160 TFT C2T C N R 161 TFT C4T C N N 162 TFT O4T O N N 163 TFT C1T C N R 164 TFT C3T C N S 165 TFT O2T O N N 166 TFT OP3 O N N 167 TFT HOP2 H N N 168 TFT H6 H N N 169 TFT H3 H N N 170 TFT H71 H N N 171 TFT H72 H N N 172 TFT H73 H N N 173 TFT H2TC H N N 174 TFT H4T1 H N N 175 TFT H4T2 H N N 176 TFT H1TC H N N 177 TFT H3TC H N N 178 TFT H2T H N N 179 TFT HOP3 H N N 180 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 TFT P OP1 doub N N 152 TFT P OP2 sing N N 153 TFT P O3T sing N N 154 TFT P OP3 sing N N 155 TFT OP2 HOP2 sing N N 156 TFT O3T C3T sing N N 157 TFT N1 C6 sing N N 158 TFT N1 C2 sing N N 159 TFT N1 C1T sing N N 160 TFT C6 C5 doub N N 161 TFT C6 H6 sing N N 162 TFT C2 O2 doub N N 163 TFT C2 N3 sing N N 164 TFT N3 C4 sing N N 165 TFT N3 H3 sing N N 166 TFT C4 O4 doub N N 167 TFT C4 C5 sing N N 168 TFT C5 C5M sing N N 169 TFT C5M H71 sing N N 170 TFT C5M H72 sing N N 171 TFT C5M H73 sing N N 172 TFT C2T C1T sing N N 173 TFT C2T C3T sing N N 174 TFT C2T O2T sing N N 175 TFT C2T H2TC sing N N 176 TFT C4T O4T sing N N 177 TFT C4T C3T sing N N 178 TFT C4T H4T1 sing N N 179 TFT C4T H4T2 sing N N 180 TFT O4T C1T sing N N 181 TFT C1T H1TC sing N N 182 TFT C3T H3TC sing N N 183 TFT O2T H2T sing N N 184 TFT OP3 HOP3 sing N N 185 # _ndb_struct_conf_na.entry_id 1N1O _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.218 -0.106 0.115 4.713 -13.772 -0.442 1 A_DC1:DG124_B A 1 ? B 124 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.178 -0.176 0.446 6.936 -11.760 -2.598 2 A_DG2:DC123_B A 2 ? B 123 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 0.147 -0.175 0.176 -4.299 -4.342 -0.681 3 A_DC3:DG122_B A 3 ? B 122 ? 19 1 1 A DG 4 1_555 B DC 9 1_555 -0.224 -0.066 0.039 12.715 -7.773 0.581 4 A_DG4:DC121_B A 4 ? B 121 ? 19 1 1 A DA 5 1_555 B DT 8 1_555 -0.070 -0.102 0.006 10.520 -12.652 4.520 5 A_DA5:DT120_B A 5 ? B 120 ? 20 1 1 A DA 6 1_555 B TFT 7 1_555 0.200 -0.040 0.021 5.108 -15.361 1.042 6 A_DA6:TFT119_B A 6 ? B 119 ? 20 1 1 A TFT 7 1_555 B DA 6 1_555 -0.116 -0.116 0.051 -0.110 -15.226 2.172 7 A_TFT7:DA118_B A 7 ? B 118 ? 20 1 1 A DT 8 1_555 B DA 5 1_555 -0.028 -0.148 -0.088 -1.918 -12.344 3.586 8 A_DT8:DA117_B A 8 ? B 117 ? 20 1 1 A DC 9 1_555 B DG 4 1_555 0.232 -0.111 0.124 -13.576 -7.098 -1.593 9 A_DC9:DG116_B A 9 ? B 116 ? 19 1 1 A DG 10 1_555 B DC 3 1_555 -0.149 -0.105 0.273 5.561 -6.742 2.149 10 A_DG10:DC115_B A 10 ? B 115 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 0.126 -0.177 0.213 0.884 -15.718 -2.131 11 A_DC11:DG114_B A 11 ? B 114 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 -0.280 -0.132 0.306 4.294 -5.894 -0.990 12 A_DG12:DC113_B A 12 ? B 113 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 0.099 0.067 3.232 -2.414 5.203 34.432 -0.668 -0.527 3.194 8.714 4.042 34.893 1 AA_DC1DG2:DC123DG124_BB A 1 ? B 124 ? A 2 ? B 123 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 0.588 0.453 3.605 2.849 -6.771 42.508 1.348 -0.492 3.526 -9.256 -3.895 43.109 2 AA_DG2DC3:DG122DC123_BB A 2 ? B 123 ? A 3 ? B 122 ? 1 A DC 3 1_555 B DG 10 1_555 A DG 4 1_555 B DC 9 1_555 -0.221 0.552 3.008 1.683 9.321 26.296 -0.958 0.839 3.004 19.694 -3.556 27.922 3 AA_DC3DG4:DC121DG122_BB A 3 ? B 122 ? A 4 ? B 121 ? 1 A DG 4 1_555 B DC 9 1_555 A DA 5 1_555 B DT 8 1_555 -0.102 -0.239 3.317 -0.548 2.402 35.034 -0.759 0.086 3.295 3.983 0.909 35.117 4 AA_DG4DA5:DT120DC121_BB A 4 ? B 121 ? A 5 ? B 120 ? 1 A DA 5 1_555 B DT 8 1_555 A DA 6 1_555 B TFT 7 1_555 0.077 -0.607 3.356 -0.657 3.117 37.318 -1.362 -0.207 3.295 4.860 1.025 37.448 5 AA_DA5DA6:TFT119DT120_BB A 5 ? B 120 ? A 6 ? B 119 ? 1 A DA 6 1_555 B TFT 7 1_555 A TFT 7 1_555 B DA 6 1_555 0.127 -0.281 3.345 -0.235 -4.861 32.830 0.348 -0.263 3.350 -8.542 0.413 33.179 6 AA_DA6TFT7:DA118TFT119_BB A 6 ? B 119 ? A 7 ? B 118 ? 1 A TFT 7 1_555 B DA 6 1_555 A DT 8 1_555 B DA 5 1_555 -0.124 -0.419 3.241 1.444 0.425 35.176 -0.755 0.417 3.228 0.703 -2.388 35.207 7 AA_TFT7DT8:DA117DA118_BB A 7 ? B 118 ? A 8 ? B 117 ? 1 A DT 8 1_555 B DA 5 1_555 A DC 9 1_555 B DG 4 1_555 -0.306 -0.363 3.507 -0.595 -0.937 42.801 -0.396 0.356 3.517 -1.284 0.815 42.815 8 AA_DT8DC9:DG116DA117_BB A 8 ? B 117 ? A 9 ? B 116 ? 1 A DC 9 1_555 B DG 4 1_555 A DG 10 1_555 B DC 3 1_555 0.615 0.728 2.962 -3.162 2.544 25.505 0.986 -2.174 2.923 5.715 7.105 25.820 9 AA_DC9DG10:DC115DG116_BB A 9 ? B 116 ? A 10 ? B 115 ? 1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -1.256 0.480 3.423 -2.394 -9.327 42.677 1.576 1.448 3.315 -12.624 3.241 43.700 10 AA_DG10DC11:DG114DC115_BB A 10 ? B 115 ? A 11 ? B 114 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 -0.129 0.253 3.196 -1.110 4.807 32.666 -0.356 0.041 3.202 8.486 1.959 33.026 11 AA_DC11DG12:DC113DG114_BB A 11 ? B 114 ? A 12 ? B 113 ? # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'B-form DNA (native Dickerson-Drew dodecamer)' # _atom_sites.entry_id 1N1O _atom_sites.fract_transf_matrix[1][1] 0.039562 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024950 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015184 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C MG N O P # loop_