data_1NRF # _entry.id 1NRF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1NRF pdb_00001nrf 10.2210/pdb1nrf/pdb RCSB RCSB018140 ? ? WWPDB D_1000018140 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-01-24 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-03-13 5 'Structure model' 1 4 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_ref_seq_dif 5 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1NRF _pdbx_database_status.recvd_initial_deposition_date 2003-01-24 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kerff, F.' 1 'Charlier, P.' 2 'Columbo, M.L.' 3 'Sauvage, E.' 4 'Brans, A.' 5 'Frere, J.M.' 6 'Joris, B.' 7 'Fonze, E.' 8 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Crystal structure of the sensor domain of the BlaR penicillin receptor from Bacillus licheniformis.' Biochemistry 42 12835 12843 2003 BICHAW US 0006-2960 0033 ? 14596597 10.1021/bi034976a 1 ;The penicillin sensory transducer, BlaR, involved in the inducibility of beta-lactamase synthesis in Bacillus licheniformis is embedded in the plasma membrane via a four-alpha-helix bundle ; MOL.MICROBIOL. 23 935 944 1997 MOMIEE UK 0950-382X 2007 ? 9076730 10.1046/j.1365-2958.1997.2761642.x # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kerff, F.' 1 ? primary 'Charlier, P.' 2 ? primary 'Colombo, M.L.' 3 ? primary 'Sauvage, E.' 4 ? primary 'Brans, A.' 5 ? primary 'Frere, J.M.' 6 ? primary 'Joris, B.' 7 ? primary 'Fonze, E.' 8 ? 1 'Hardt, K.' 9 ? 1 'Joris, B.' 10 ? 1 'Lepage, S.' 11 ? 1 'Brasseur, R.' 12 ? 1 'Lampen, J.O.' 13 ? 1 'Frere, J.M.' 14 ? 1 'Fink, A.L.' 15 ? 1 'Ghuysen, J.M.' 16 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'REGULATORY PROTEIN BLAR1' 29902.072 1 ? ? 'C-terminal domain' ? 2 water nat water 18.015 81 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;QEGTSPMQKETRFLPGTNVEYEDYSTFFDKFSASGGFVLFNSNRKKYTIYNRKESTSRFAPASTYKVFSALLALESGIIT KNDSHMTWDGTQYPYKEWNQDQDLFSAMSSSTTWYFQKLDRQIGEDHLRHYLKSIHYGNEDFSVPADYWLDGSLQISPLE QVNILKKFYDNEFDFKQSNIETVKDSIRLEESNGRVLSGKTGTSVINGELHAGWFIGYVETADNTFFFAVHIQGEKRAAG SSAAEIALSILDKKGIYPSVSR ; _entity_poly.pdbx_seq_one_letter_code_can ;QEGTSPMQKETRFLPGTNVEYEDYSTFFDKFSASGGFVLFNSNRKKYTIYNRKESTSRFAPASTYKVFSALLALESGIIT KNDSHMTWDGTQYPYKEWNQDQDLFSAMSSSTTWYFQKLDRQIGEDHLRHYLKSIHYGNEDFSVPADYWLDGSLQISPLE QVNILKKFYDNEFDFKQSNIETVKDSIRLEESNGRVLSGKTGTSVINGELHAGWFIGYVETADNTFFFAVHIQGEKRAAG SSAAEIALSILDKKGIYPSVSR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 GLU n 1 3 GLY n 1 4 THR n 1 5 SER n 1 6 PRO n 1 7 MET n 1 8 GLN n 1 9 LYS n 1 10 GLU n 1 11 THR n 1 12 ARG n 1 13 PHE n 1 14 LEU n 1 15 PRO n 1 16 GLY n 1 17 THR n 1 18 ASN n 1 19 VAL n 1 20 GLU n 1 21 TYR n 1 22 GLU n 1 23 ASP n 1 24 TYR n 1 25 SER n 1 26 THR n 1 27 PHE n 1 28 PHE n 1 29 ASP n 1 30 LYS n 1 31 PHE n 1 32 SER n 1 33 ALA n 1 34 SER n 1 35 GLY n 1 36 GLY n 1 37 PHE n 1 38 VAL n 1 39 LEU n 1 40 PHE n 1 41 ASN n 1 42 SER n 1 43 ASN n 1 44 ARG n 1 45 LYS n 1 46 LYS n 1 47 TYR n 1 48 THR n 1 49 ILE n 1 50 TYR n 1 51 ASN n 1 52 ARG n 1 53 LYS n 1 54 GLU n 1 55 SER n 1 56 THR n 1 57 SER n 1 58 ARG n 1 59 PHE n 1 60 ALA n 1 61 PRO n 1 62 ALA n 1 63 SER n 1 64 THR n 1 65 TYR n 1 66 LYS n 1 67 VAL n 1 68 PHE n 1 69 SER n 1 70 ALA n 1 71 LEU n 1 72 LEU n 1 73 ALA n 1 74 LEU n 1 75 GLU n 1 76 SER n 1 77 GLY n 1 78 ILE n 1 79 ILE n 1 80 THR n 1 81 LYS n 1 82 ASN n 1 83 ASP n 1 84 SER n 1 85 HIS n 1 86 MET n 1 87 THR n 1 88 TRP n 1 89 ASP n 1 90 GLY n 1 91 THR n 1 92 GLN n 1 93 TYR n 1 94 PRO n 1 95 TYR n 1 96 LYS n 1 97 GLU n 1 98 TRP n 1 99 ASN n 1 100 GLN n 1 101 ASP n 1 102 GLN n 1 103 ASP n 1 104 LEU n 1 105 PHE n 1 106 SER n 1 107 ALA n 1 108 MET n 1 109 SER n 1 110 SER n 1 111 SER n 1 112 THR n 1 113 THR n 1 114 TRP n 1 115 TYR n 1 116 PHE n 1 117 GLN n 1 118 LYS n 1 119 LEU n 1 120 ASP n 1 121 ARG n 1 122 GLN n 1 123 ILE n 1 124 GLY n 1 125 GLU n 1 126 ASP n 1 127 HIS n 1 128 LEU n 1 129 ARG n 1 130 HIS n 1 131 TYR n 1 132 LEU n 1 133 LYS n 1 134 SER n 1 135 ILE n 1 136 HIS n 1 137 TYR n 1 138 GLY n 1 139 ASN n 1 140 GLU n 1 141 ASP n 1 142 PHE n 1 143 SER n 1 144 VAL n 1 145 PRO n 1 146 ALA n 1 147 ASP n 1 148 TYR n 1 149 TRP n 1 150 LEU n 1 151 ASP n 1 152 GLY n 1 153 SER n 1 154 LEU n 1 155 GLN n 1 156 ILE n 1 157 SER n 1 158 PRO n 1 159 LEU n 1 160 GLU n 1 161 GLN n 1 162 VAL n 1 163 ASN n 1 164 ILE n 1 165 LEU n 1 166 LYS n 1 167 LYS n 1 168 PHE n 1 169 TYR n 1 170 ASP n 1 171 ASN n 1 172 GLU n 1 173 PHE n 1 174 ASP n 1 175 PHE n 1 176 LYS n 1 177 GLN n 1 178 SER n 1 179 ASN n 1 180 ILE n 1 181 GLU n 1 182 THR n 1 183 VAL n 1 184 LYS n 1 185 ASP n 1 186 SER n 1 187 ILE n 1 188 ARG n 1 189 LEU n 1 190 GLU n 1 191 GLU n 1 192 SER n 1 193 ASN n 1 194 GLY n 1 195 ARG n 1 196 VAL n 1 197 LEU n 1 198 SER n 1 199 GLY n 1 200 LYS n 1 201 THR n 1 202 GLY n 1 203 THR n 1 204 SER n 1 205 VAL n 1 206 ILE n 1 207 ASN n 1 208 GLY n 1 209 GLU n 1 210 LEU n 1 211 HIS n 1 212 ALA n 1 213 GLY n 1 214 TRP n 1 215 PHE n 1 216 ILE n 1 217 GLY n 1 218 TYR n 1 219 VAL n 1 220 GLU n 1 221 THR n 1 222 ALA n 1 223 ASP n 1 224 ASN n 1 225 THR n 1 226 PHE n 1 227 PHE n 1 228 PHE n 1 229 ALA n 1 230 VAL n 1 231 HIS n 1 232 ILE n 1 233 GLN n 1 234 GLY n 1 235 GLU n 1 236 LYS n 1 237 ARG n 1 238 ALA n 1 239 ALA n 1 240 GLY n 1 241 SER n 1 242 SER n 1 243 ALA n 1 244 ALA n 1 245 GLU n 1 246 ILE n 1 247 ALA n 1 248 LEU n 1 249 SER n 1 250 ILE n 1 251 LEU n 1 252 ASP n 1 253 LYS n 1 254 LYS n 1 255 GLY n 1 256 ILE n 1 257 TYR n 1 258 PRO n 1 259 SER n 1 260 VAL n 1 261 SER n 1 262 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Bacillus _entity_src_gen.pdbx_gene_src_gene blaR1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 749-I _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus licheniformis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1402 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector pIN3-ompA _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 340 ? ? ? A . n A 1 2 GLU 2 341 ? ? ? A . n A 1 3 GLY 3 342 ? ? ? A . n A 1 4 THR 4 343 ? ? ? A . n A 1 5 SER 5 344 ? ? ? A . n A 1 6 PRO 6 345 ? ? ? A . n A 1 7 MET 7 346 ? ? ? A . n A 1 8 GLN 8 347 ? ? ? A . n A 1 9 LYS 9 348 ? ? ? A . n A 1 10 GLU 10 349 ? ? ? A . n A 1 11 THR 11 350 ? ? ? A . n A 1 12 ARG 12 351 ? ? ? A . n A 1 13 PHE 13 352 352 PHE PHE A . n A 1 14 LEU 14 353 353 LEU LEU A . n A 1 15 PRO 15 354 354 PRO PRO A . n A 1 16 GLY 16 355 355 GLY GLY A . n A 1 17 THR 17 356 356 THR THR A . n A 1 18 ASN 18 357 357 ASN ASN A . n A 1 19 VAL 19 358 358 VAL VAL A . n A 1 20 GLU 20 359 359 GLU GLU A . n A 1 21 TYR 21 360 360 TYR TYR A . n A 1 22 GLU 22 361 361 GLU GLU A . n A 1 23 ASP 23 362 362 ASP ASP A . n A 1 24 TYR 24 363 363 TYR TYR A . n A 1 25 SER 25 364 364 SER SER A . n A 1 26 THR 26 365 365 THR THR A . n A 1 27 PHE 27 366 366 PHE PHE A . n A 1 28 PHE 28 367 367 PHE PHE A . n A 1 29 ASP 29 368 368 ASP ASP A . n A 1 30 LYS 30 369 369 LYS LYS A . n A 1 31 PHE 31 370 370 PHE PHE A . n A 1 32 SER 32 371 371 SER SER A . n A 1 33 ALA 33 372 372 ALA ALA A . n A 1 34 SER 34 373 373 SER SER A . n A 1 35 GLY 35 374 374 GLY GLY A . n A 1 36 GLY 36 375 375 GLY GLY A . n A 1 37 PHE 37 376 376 PHE PHE A . n A 1 38 VAL 38 377 377 VAL VAL A . n A 1 39 LEU 39 378 378 LEU LEU A . n A 1 40 PHE 40 379 379 PHE PHE A . n A 1 41 ASN 41 380 380 ASN ASN A . n A 1 42 SER 42 381 381 SER SER A . n A 1 43 ASN 43 382 382 ASN ASN A . n A 1 44 ARG 44 383 383 ARG ARG A . n A 1 45 LYS 45 384 384 LYS LYS A . n A 1 46 LYS 46 385 385 LYS LYS A . n A 1 47 TYR 47 386 386 TYR TYR A . n A 1 48 THR 48 387 387 THR THR A . n A 1 49 ILE 49 388 388 ILE ILE A . n A 1 50 TYR 50 389 389 TYR TYR A . n A 1 51 ASN 51 390 390 ASN ASN A . n A 1 52 ARG 52 391 391 ARG ARG A . n A 1 53 LYS 53 392 392 LYS LYS A . n A 1 54 GLU 54 393 393 GLU GLU A . n A 1 55 SER 55 394 394 SER SER A . n A 1 56 THR 56 395 395 THR THR A . n A 1 57 SER 57 396 396 SER SER A . n A 1 58 ARG 58 397 397 ARG ARG A . n A 1 59 PHE 59 398 398 PHE PHE A . n A 1 60 ALA 60 399 399 ALA ALA A . n A 1 61 PRO 61 400 400 PRO PRO A . n A 1 62 ALA 62 401 401 ALA ALA A . n A 1 63 SER 63 402 402 SER SER A . n A 1 64 THR 64 403 403 THR THR A . n A 1 65 TYR 65 404 404 TYR TYR A . n A 1 66 LYS 66 405 405 LYS LYS A . n A 1 67 VAL 67 406 406 VAL VAL A . n A 1 68 PHE 68 407 407 PHE PHE A . n A 1 69 SER 69 408 408 SER SER A . n A 1 70 ALA 70 409 409 ALA ALA A . n A 1 71 LEU 71 410 410 LEU LEU A . n A 1 72 LEU 72 411 411 LEU LEU A . n A 1 73 ALA 73 412 412 ALA ALA A . n A 1 74 LEU 74 413 413 LEU LEU A . n A 1 75 GLU 75 414 414 GLU GLU A . n A 1 76 SER 76 415 415 SER SER A . n A 1 77 GLY 77 416 416 GLY GLY A . n A 1 78 ILE 78 417 417 ILE ILE A . n A 1 79 ILE 79 418 418 ILE ILE A . n A 1 80 THR 80 419 419 THR THR A . n A 1 81 LYS 81 420 420 LYS LYS A . n A 1 82 ASN 82 421 421 ASN ASN A . n A 1 83 ASP 83 422 422 ASP ASP A . n A 1 84 SER 84 423 423 SER SER A . n A 1 85 HIS 85 424 424 HIS HIS A . n A 1 86 MET 86 425 425 MET MET A . n A 1 87 THR 87 426 426 THR THR A . n A 1 88 TRP 88 427 427 TRP TRP A . n A 1 89 ASP 89 428 428 ASP ASP A . n A 1 90 GLY 90 429 429 GLY GLY A . n A 1 91 THR 91 430 430 THR THR A . n A 1 92 GLN 92 431 431 GLN GLN A . n A 1 93 TYR 93 432 432 TYR TYR A . n A 1 94 PRO 94 433 433 PRO PRO A . n A 1 95 TYR 95 434 434 TYR TYR A . n A 1 96 LYS 96 435 435 LYS LYS A . n A 1 97 GLU 97 436 436 GLU GLU A . n A 1 98 TRP 98 437 437 TRP TRP A . n A 1 99 ASN 99 438 438 ASN ASN A . n A 1 100 GLN 100 439 439 GLN GLN A . n A 1 101 ASP 101 440 440 ASP ASP A . n A 1 102 GLN 102 441 441 GLN GLN A . n A 1 103 ASP 103 442 442 ASP ASP A . n A 1 104 LEU 104 443 443 LEU LEU A . n A 1 105 PHE 105 444 444 PHE PHE A . n A 1 106 SER 106 445 445 SER SER A . n A 1 107 ALA 107 446 446 ALA ALA A . n A 1 108 MET 108 447 447 MET MET A . n A 1 109 SER 109 448 448 SER SER A . n A 1 110 SER 110 449 449 SER SER A . n A 1 111 SER 111 450 450 SER SER A . n A 1 112 THR 112 451 451 THR THR A . n A 1 113 THR 113 452 452 THR THR A . n A 1 114 TRP 114 453 453 TRP TRP A . n A 1 115 TYR 115 454 454 TYR TYR A . n A 1 116 PHE 116 455 455 PHE PHE A . n A 1 117 GLN 117 456 456 GLN GLN A . n A 1 118 LYS 118 457 457 LYS LYS A . n A 1 119 LEU 119 458 458 LEU LEU A . n A 1 120 ASP 120 459 459 ASP ASP A . n A 1 121 ARG 121 460 460 ARG ARG A . n A 1 122 GLN 122 461 461 GLN GLN A . n A 1 123 ILE 123 462 462 ILE ILE A . n A 1 124 GLY 124 463 463 GLY GLY A . n A 1 125 GLU 125 464 464 GLU GLU A . n A 1 126 ASP 126 465 465 ASP ASP A . n A 1 127 HIS 127 466 466 HIS HIS A . n A 1 128 LEU 128 467 467 LEU LEU A . n A 1 129 ARG 129 468 468 ARG ARG A . n A 1 130 HIS 130 469 469 HIS HIS A . n A 1 131 TYR 131 470 470 TYR TYR A . n A 1 132 LEU 132 471 471 LEU LEU A . n A 1 133 LYS 133 472 472 LYS LYS A . n A 1 134 SER 134 473 473 SER SER A . n A 1 135 ILE 135 474 474 ILE ILE A . n A 1 136 HIS 136 475 475 HIS HIS A . n A 1 137 TYR 137 476 476 TYR TYR A . n A 1 138 GLY 138 477 477 GLY GLY A . n A 1 139 ASN 139 478 478 ASN ASN A . n A 1 140 GLU 140 479 479 GLU GLU A . n A 1 141 ASP 141 480 480 ASP ASP A . n A 1 142 PHE 142 481 481 PHE PHE A . n A 1 143 SER 143 482 482 SER SER A . n A 1 144 VAL 144 483 483 VAL VAL A . n A 1 145 PRO 145 484 484 PRO PRO A . n A 1 146 ALA 146 485 485 ALA ALA A . n A 1 147 ASP 147 486 486 ASP ASP A . n A 1 148 TYR 148 487 487 TYR TYR A . n A 1 149 TRP 149 488 488 TRP TRP A . n A 1 150 LEU 150 489 489 LEU LEU A . n A 1 151 ASP 151 490 490 ASP ASP A . n A 1 152 GLY 152 491 491 GLY GLY A . n A 1 153 SER 153 492 492 SER SER A . n A 1 154 LEU 154 493 493 LEU LEU A . n A 1 155 GLN 155 494 494 GLN GLN A . n A 1 156 ILE 156 495 495 ILE ILE A . n A 1 157 SER 157 496 496 SER SER A . n A 1 158 PRO 158 497 497 PRO PRO A . n A 1 159 LEU 159 498 498 LEU LEU A . n A 1 160 GLU 160 499 499 GLU GLU A . n A 1 161 GLN 161 500 500 GLN GLN A . n A 1 162 VAL 162 501 501 VAL VAL A . n A 1 163 ASN 163 502 502 ASN ASN A . n A 1 164 ILE 164 503 503 ILE ILE A . n A 1 165 LEU 165 504 504 LEU LEU A . n A 1 166 LYS 166 505 505 LYS LYS A . n A 1 167 LYS 167 506 506 LYS LYS A . n A 1 168 PHE 168 507 507 PHE PHE A . n A 1 169 TYR 169 508 508 TYR TYR A . n A 1 170 ASP 170 509 509 ASP ASP A . n A 1 171 ASN 171 510 510 ASN ASN A . n A 1 172 GLU 172 511 511 GLU GLU A . n A 1 173 PHE 173 512 512 PHE PHE A . n A 1 174 ASP 174 513 513 ASP ASP A . n A 1 175 PHE 175 514 514 PHE PHE A . n A 1 176 LYS 176 515 515 LYS LYS A . n A 1 177 GLN 177 516 516 GLN GLN A . n A 1 178 SER 178 517 517 SER SER A . n A 1 179 ASN 179 518 518 ASN ASN A . n A 1 180 ILE 180 519 519 ILE ILE A . n A 1 181 GLU 181 520 520 GLU GLU A . n A 1 182 THR 182 521 521 THR THR A . n A 1 183 VAL 183 522 522 VAL VAL A . n A 1 184 LYS 184 523 523 LYS LYS A . n A 1 185 ASP 185 524 524 ASP ASP A . n A 1 186 SER 186 525 525 SER SER A . n A 1 187 ILE 187 526 526 ILE ILE A . n A 1 188 ARG 188 527 527 ARG ARG A . n A 1 189 LEU 189 528 528 LEU LEU A . n A 1 190 GLU 190 529 529 GLU GLU A . n A 1 191 GLU 191 530 530 GLU GLU A . n A 1 192 SER 192 531 531 SER SER A . n A 1 193 ASN 193 532 532 ASN ASN A . n A 1 194 GLY 194 533 533 GLY GLY A . n A 1 195 ARG 195 534 534 ARG ARG A . n A 1 196 VAL 196 535 535 VAL VAL A . n A 1 197 LEU 197 536 536 LEU LEU A . n A 1 198 SER 198 537 537 SER SER A . n A 1 199 GLY 199 538 538 GLY GLY A . n A 1 200 LYS 200 539 539 LYS LYS A . n A 1 201 THR 201 540 540 THR THR A . n A 1 202 GLY 202 541 541 GLY GLY A . n A 1 203 THR 203 542 542 THR THR A . n A 1 204 SER 204 543 543 SER SER A . n A 1 205 VAL 205 544 544 VAL VAL A . n A 1 206 ILE 206 545 545 ILE ILE A . n A 1 207 ASN 207 546 546 ASN ASN A . n A 1 208 GLY 208 547 547 GLY GLY A . n A 1 209 GLU 209 548 548 GLU GLU A . n A 1 210 LEU 210 549 549 LEU LEU A . n A 1 211 HIS 211 550 550 HIS HIS A . n A 1 212 ALA 212 551 551 ALA ALA A . n A 1 213 GLY 213 552 552 GLY GLY A . n A 1 214 TRP 214 553 553 TRP TRP A . n A 1 215 PHE 215 554 554 PHE PHE A . n A 1 216 ILE 216 555 555 ILE ILE A . n A 1 217 GLY 217 556 556 GLY GLY A . n A 1 218 TYR 218 557 557 TYR TYR A . n A 1 219 VAL 219 558 558 VAL VAL A . n A 1 220 GLU 220 559 559 GLU GLU A . n A 1 221 THR 221 560 560 THR THR A . n A 1 222 ALA 222 561 561 ALA ALA A . n A 1 223 ASP 223 562 562 ASP ASP A . n A 1 224 ASN 224 563 563 ASN ASN A . n A 1 225 THR 225 564 564 THR THR A . n A 1 226 PHE 226 565 565 PHE PHE A . n A 1 227 PHE 227 566 566 PHE PHE A . n A 1 228 PHE 228 567 567 PHE PHE A . n A 1 229 ALA 229 568 568 ALA ALA A . n A 1 230 VAL 230 569 569 VAL VAL A . n A 1 231 HIS 231 570 570 HIS HIS A . n A 1 232 ILE 232 571 571 ILE ILE A . n A 1 233 GLN 233 572 572 GLN GLN A . n A 1 234 GLY 234 573 573 GLY GLY A . n A 1 235 GLU 235 574 574 GLU GLU A . n A 1 236 LYS 236 575 575 LYS LYS A . n A 1 237 ARG 237 576 576 ARG ARG A . n A 1 238 ALA 238 577 577 ALA ALA A . n A 1 239 ALA 239 578 578 ALA ALA A . n A 1 240 GLY 240 579 579 GLY GLY A . n A 1 241 SER 241 580 580 SER SER A . n A 1 242 SER 242 581 581 SER SER A . n A 1 243 ALA 243 582 582 ALA ALA A . n A 1 244 ALA 244 583 583 ALA ALA A . n A 1 245 GLU 245 584 584 GLU GLU A . n A 1 246 ILE 246 585 585 ILE ILE A . n A 1 247 ALA 247 586 586 ALA ALA A . n A 1 248 LEU 248 587 587 LEU LEU A . n A 1 249 SER 249 588 588 SER SER A . n A 1 250 ILE 250 589 589 ILE ILE A . n A 1 251 LEU 251 590 590 LEU LEU A . n A 1 252 ASP 252 591 591 ASP ASP A . n A 1 253 LYS 253 592 592 LYS LYS A . n A 1 254 LYS 254 593 593 LYS LYS A . n A 1 255 GLY 255 594 594 GLY GLY A . n A 1 256 ILE 256 595 595 ILE ILE A . n A 1 257 TYR 257 596 596 TYR TYR A . n A 1 258 PRO 258 597 597 PRO PRO A . n A 1 259 SER 259 598 ? ? ? A . n A 1 260 VAL 260 599 ? ? ? A . n A 1 261 SER 261 600 ? ? ? A . n A 1 262 ARG 262 601 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 700 700 HOH WAT A . B 2 HOH 2 701 701 HOH WAT A . B 2 HOH 3 702 702 HOH WAT A . B 2 HOH 4 703 703 HOH WAT A . B 2 HOH 5 704 704 HOH WAT A . B 2 HOH 6 705 705 HOH WAT A . B 2 HOH 7 706 706 HOH WAT A . B 2 HOH 8 707 707 HOH WAT A . B 2 HOH 9 708 708 HOH WAT A . B 2 HOH 10 709 709 HOH WAT A . B 2 HOH 11 710 710 HOH WAT A . B 2 HOH 12 711 711 HOH WAT A . B 2 HOH 13 712 712 HOH WAT A . B 2 HOH 14 713 713 HOH WAT A . B 2 HOH 15 714 714 HOH WAT A . B 2 HOH 16 715 715 HOH WAT A . B 2 HOH 17 716 716 HOH WAT A . B 2 HOH 18 717 717 HOH WAT A . B 2 HOH 19 718 718 HOH WAT A . B 2 HOH 20 719 719 HOH WAT A . B 2 HOH 21 720 720 HOH WAT A . B 2 HOH 22 721 721 HOH WAT A . B 2 HOH 23 722 722 HOH WAT A . B 2 HOH 24 723 723 HOH WAT A . B 2 HOH 25 724 724 HOH WAT A . B 2 HOH 26 725 725 HOH WAT A . B 2 HOH 27 726 726 HOH WAT A . B 2 HOH 28 727 727 HOH WAT A . B 2 HOH 29 728 728 HOH WAT A . B 2 HOH 30 729 729 HOH WAT A . B 2 HOH 31 730 730 HOH WAT A . B 2 HOH 32 731 731 HOH WAT A . B 2 HOH 33 732 732 HOH WAT A . B 2 HOH 34 733 733 HOH WAT A . B 2 HOH 35 734 734 HOH WAT A . B 2 HOH 36 735 735 HOH WAT A . B 2 HOH 37 736 736 HOH WAT A . B 2 HOH 38 737 737 HOH WAT A . B 2 HOH 39 738 738 HOH WAT A . B 2 HOH 40 739 739 HOH WAT A . B 2 HOH 41 740 740 HOH WAT A . B 2 HOH 42 741 741 HOH WAT A . B 2 HOH 43 742 742 HOH WAT A . B 2 HOH 44 743 743 HOH WAT A . B 2 HOH 45 744 744 HOH WAT A . B 2 HOH 46 745 745 HOH WAT A . B 2 HOH 47 746 746 HOH WAT A . B 2 HOH 48 747 747 HOH WAT A . B 2 HOH 49 748 748 HOH WAT A . B 2 HOH 50 749 749 HOH WAT A . B 2 HOH 51 750 750 HOH WAT A . B 2 HOH 52 751 751 HOH WAT A . B 2 HOH 53 752 752 HOH WAT A . B 2 HOH 54 753 753 HOH WAT A . B 2 HOH 55 754 754 HOH WAT A . B 2 HOH 56 755 755 HOH WAT A . B 2 HOH 57 756 756 HOH WAT A . B 2 HOH 58 757 757 HOH WAT A . B 2 HOH 59 758 758 HOH WAT A . B 2 HOH 60 759 759 HOH WAT A . B 2 HOH 61 760 760 HOH WAT A . B 2 HOH 62 761 761 HOH WAT A . B 2 HOH 63 762 762 HOH WAT A . B 2 HOH 64 763 763 HOH WAT A . B 2 HOH 65 764 764 HOH WAT A . B 2 HOH 66 765 765 HOH WAT A . B 2 HOH 67 766 766 HOH WAT A . B 2 HOH 68 767 767 HOH WAT A . B 2 HOH 69 768 768 HOH WAT A . B 2 HOH 70 769 769 HOH WAT A . B 2 HOH 71 770 770 HOH WAT A . B 2 HOH 72 771 771 HOH WAT A . B 2 HOH 73 772 772 HOH WAT A . B 2 HOH 74 773 773 HOH WAT A . B 2 HOH 75 774 774 HOH WAT A . B 2 HOH 76 775 775 HOH WAT A . B 2 HOH 77 776 776 HOH WAT A . B 2 HOH 78 777 777 HOH WAT A . B 2 HOH 79 778 778 HOH WAT A . B 2 HOH 80 779 779 HOH WAT A . B 2 HOH 81 780 780 HOH WAT A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.0 ? 1 MOSFLM 'data reduction' . ? 2 CCP4 'data scaling' '(SCALA)' ? 3 AMoRE phasing . ? 4 # _cell.entry_id 1NRF _cell.length_a 45.848 _cell.length_b 45.848 _cell.length_c 130.198 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NRF _symmetry.space_group_name_H-M 'P 41' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 # _exptl.entry_id 1NRF _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.34 _exptl_crystal.density_percent_sol 47.11 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.95 _exptl_crystal_grow.pdbx_details '18% PEG 8000, 5% Glycerol, 50mM CaCl2 in 0.1M Cacodylate, pH 6.95, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2002-09-07 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9786 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE BM30A' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline BM30A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9786 # _reflns.entry_id 1NRF _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 32.444 _reflns.d_resolution_high 2.44 _reflns.number_obs 9979 _reflns.number_all 9979 _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs 0.069 _reflns.pdbx_Rsym_value 0.059 _reflns.pdbx_netI_over_sigmaI 8.9 _reflns.B_iso_Wilson_estimate 40.3 _reflns.pdbx_redundancy 4.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.44 _reflns_shell.d_res_low 2.50 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.232 _reflns_shell.pdbx_Rsym_value 0.201 _reflns_shell.meanI_over_sigI_obs 3.7 _reflns_shell.pdbx_redundancy 4.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 745 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1NRF _refine.ls_number_reflns_obs 8827 _refine.ls_number_reflns_all 9234 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 31.52 _refine.ls_d_res_high 2.50 _refine.ls_percent_reflns_obs 95.0 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.204 _refine.ls_R_factor_R_free 0.257 _refine.ls_R_factor_R_free_error 0.012 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 442 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 40.0 _refine.aniso_B[1][1] 1.85 _refine.aniso_B[2][2] 1.85 _refine.aniso_B[3][3] -3.69 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.367659 _refine.solvent_model_param_bsol 53.7379 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'Class D beta-lactamase OXA-2 from Salmonella typhimurium' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1NRF _refine_analyze.Luzzati_coordinate_error_obs 0.27 _refine_analyze.Luzzati_sigma_a_obs 0.20 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.39 _refine_analyze.Luzzati_sigma_a_free 0.29 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2004 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 81 _refine_hist.number_atoms_total 2085 _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 31.52 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.1 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 23.1 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.74 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.72 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.79 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.00 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 2.95 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.50 _refine_ls_shell.d_res_low 2.66 _refine_ls_shell.number_reflns_R_work 1284 _refine_ls_shell.R_factor_R_work 0.213 _refine_ls_shell.percent_reflns_obs 89.1 _refine_ls_shell.R_factor_R_free 0.312 _refine_ls_shell.R_factor_R_free_error 0.036 _refine_ls_shell.percent_reflns_R_free 5.7 _refine_ls_shell.number_reflns_R_free 77 _refine_ls_shell.number_reflns_obs 1284 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 1NRF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1NRF _struct.title 'C-terminal domain of the Bacillus licheniformis BlaR penicillin-receptor' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1NRF _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' _struct_keywords.text 'Penicillin-receptor, Beta-lactamase induction, Bacillus licheniformis, Penicillin-Binding Protein, MEMBRANE PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BLAR_BACLI _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MQKETRFLPGTNVEYEDYSTFFDKFSASGGFVLFNSNRKKYTIYNRKESTSRFAPASTYKVFSALLALESGIITKNDSHM TWDGTQYPYKEWNQDQDLFSAMSSSTTWYFQKLDRQIGEDHLRHYLKSIHYGNEDFSVPADYWLDGSLQISPLEQVNILK KFYDNEFDFKQSNIETVKDSIRLEESNGRVLSGKTGTSVINGELHAGWFIGYVETADNTFFFAVHIQGEKRAAGSSAAEI ALSILDKKGIYPSVSR ; _struct_ref.pdbx_align_begin 346 _struct_ref.pdbx_db_accession P12287 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1NRF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 7 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 262 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P12287 _struct_ref_seq.db_align_beg 346 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 601 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 346 _struct_ref_seq.pdbx_auth_seq_align_end 601 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1NRF GLN A 1 ? UNP P12287 ? ? 'cloning artifact' 340 1 1 1NRF GLU A 2 ? UNP P12287 ? ? 'cloning artifact' 341 2 1 1NRF GLY A 3 ? UNP P12287 ? ? 'cloning artifact' 342 3 1 1NRF THR A 4 ? UNP P12287 ? ? 'cloning artifact' 343 4 1 1NRF SER A 5 ? UNP P12287 ? ? 'cloning artifact' 344 5 1 1NRF PRO A 6 ? UNP P12287 ? ? 'cloning artifact' 345 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 TYR A 24 ? LYS A 30 ? TYR A 363 LYS A 369 1 ? 7 HELX_P HELX_P2 2 ASN A 51 ? SER A 57 ? ASN A 390 SER A 396 1 ? 7 HELX_P HELX_P3 3 PRO A 61 ? THR A 64 ? PRO A 400 THR A 403 5 ? 4 HELX_P HELX_P4 4 TYR A 65 ? SER A 76 ? TYR A 404 SER A 415 1 ? 12 HELX_P HELX_P5 5 ASP A 103 ? SER A 111 ? ASP A 442 SER A 450 1 ? 9 HELX_P HELX_P6 6 THR A 112 ? GLY A 124 ? THR A 451 GLY A 463 1 ? 13 HELX_P HELX_P7 7 GLY A 124 ? ILE A 135 ? GLY A 463 ILE A 474 1 ? 12 HELX_P HELX_P8 8 SER A 157 ? ASP A 170 ? SER A 496 ASP A 509 1 ? 14 HELX_P HELX_P9 9 LYS A 176 ? ILE A 187 ? LYS A 515 ILE A 526 1 ? 12 HELX_P HELX_P10 10 ALA A 238 ? LYS A 254 ? ALA A 577 LYS A 593 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASN A 18 ? TYR A 21 ? ASN A 357 TYR A 360 A 2 LYS A 46 ? TYR A 50 ? LYS A 385 TYR A 389 A 3 ALA A 33 ? ASN A 41 ? ALA A 372 ASN A 380 A 4 THR A 225 ? GLY A 234 ? THR A 564 GLY A 573 A 5 HIS A 211 ? GLU A 220 ? HIS A 550 GLU A 559 A 6 ARG A 195 ? VAL A 205 ? ARG A 534 VAL A 544 A 7 ARG A 188 ? SER A 192 ? ARG A 527 SER A 531 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 20 ? N GLU A 359 O TYR A 47 ? O TYR A 386 A 2 3 O LYS A 46 ? O LYS A 385 N ASN A 41 ? N ASN A 380 A 3 4 N PHE A 40 ? N PHE A 379 O PHE A 227 ? O PHE A 566 A 4 5 O PHE A 226 ? O PHE A 565 N VAL A 219 ? N VAL A 558 A 5 6 O ALA A 212 ? O ALA A 551 N SER A 204 ? N SER A 543 A 6 7 O ARG A 195 ? O ARG A 534 N SER A 192 ? N SER A 531 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 C A ASN 546 ? ? CA A GLY 547 ? ? 1.64 2 1 CA A ASN 546 ? ? N A GLY 547 ? ? 1.68 3 1 O A VAL 544 ? ? N A ILE 545 ? ? 1.73 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C A VAL 544 ? ? N A ILE 545 ? ? 1.135 1.336 -0.201 0.023 Y 2 1 C A ASN 546 ? ? N A GLY 547 ? ? 1.098 1.336 -0.238 0.023 Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 O A VAL 544 ? ? C A VAL 544 ? ? N A ILE 545 ? ? 93.70 122.70 -29.00 1.60 Y 2 1 CA A ASN 546 ? ? C A ASN 546 ? ? N A GLY 547 ? ? 77.33 116.20 -38.87 2.00 Y 3 1 O A ASN 546 ? ? C A ASN 546 ? ? N A GLY 547 ? ? 154.11 123.20 30.91 1.70 Y 4 1 C A ASN 546 ? ? N A GLY 547 ? ? CA A GLY 547 ? ? 78.45 122.30 -43.85 2.10 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 390 ? ? 63.90 79.83 2 1 ALA A 401 ? ? 54.54 -149.04 3 1 ASP A 428 ? ? -36.78 -73.96 4 1 PRO A 433 ? ? -58.95 -6.69 5 1 THR A 451 ? ? -67.67 94.44 6 1 HIS A 475 ? ? 39.75 67.49 7 1 SER A 482 ? ? -105.68 -81.42 8 1 ASP A 486 ? ? -147.15 17.85 9 1 LEU A 489 ? ? -130.32 -35.33 10 1 ASN A 532 ? ? 38.33 -89.14 11 1 ASN A 546 ? ? -169.39 -112.16 12 1 GLU A 548 ? ? -77.85 37.76 # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id VAL _pdbx_validate_main_chain_plane.auth_asym_id A _pdbx_validate_main_chain_plane.auth_seq_id 544 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id ? _pdbx_validate_main_chain_plane.improper_torsion_angle 34.33 # loop_ _pdbx_validate_polymer_linkage.id _pdbx_validate_polymer_linkage.PDB_model_num _pdbx_validate_polymer_linkage.auth_atom_id_1 _pdbx_validate_polymer_linkage.auth_asym_id_1 _pdbx_validate_polymer_linkage.auth_comp_id_1 _pdbx_validate_polymer_linkage.auth_seq_id_1 _pdbx_validate_polymer_linkage.PDB_ins_code_1 _pdbx_validate_polymer_linkage.label_alt_id_1 _pdbx_validate_polymer_linkage.auth_atom_id_2 _pdbx_validate_polymer_linkage.auth_asym_id_2 _pdbx_validate_polymer_linkage.auth_comp_id_2 _pdbx_validate_polymer_linkage.auth_seq_id_2 _pdbx_validate_polymer_linkage.PDB_ins_code_2 _pdbx_validate_polymer_linkage.label_alt_id_2 _pdbx_validate_polymer_linkage.dist 1 1 C A VAL 544 ? ? N A ILE 545 ? ? 1.13 2 1 C A ASN 546 ? ? N A GLY 547 ? ? 1.10 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLN 340 ? A GLN 1 2 1 Y 1 A GLU 341 ? A GLU 2 3 1 Y 1 A GLY 342 ? A GLY 3 4 1 Y 1 A THR 343 ? A THR 4 5 1 Y 1 A SER 344 ? A SER 5 6 1 Y 1 A PRO 345 ? A PRO 6 7 1 Y 1 A MET 346 ? A MET 7 8 1 Y 1 A GLN 347 ? A GLN 8 9 1 Y 1 A LYS 348 ? A LYS 9 10 1 Y 1 A GLU 349 ? A GLU 10 11 1 Y 1 A THR 350 ? A THR 11 12 1 Y 1 A ARG 351 ? A ARG 12 13 1 Y 1 A SER 598 ? A SER 259 14 1 Y 1 A VAL 599 ? A VAL 260 15 1 Y 1 A SER 600 ? A SER 261 16 1 Y 1 A ARG 601 ? A ARG 262 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 ILE N N N N 147 ILE CA C N S 148 ILE C C N N 149 ILE O O N N 150 ILE CB C N S 151 ILE CG1 C N N 152 ILE CG2 C N N 153 ILE CD1 C N N 154 ILE OXT O N N 155 ILE H H N N 156 ILE H2 H N N 157 ILE HA H N N 158 ILE HB H N N 159 ILE HG12 H N N 160 ILE HG13 H N N 161 ILE HG21 H N N 162 ILE HG22 H N N 163 ILE HG23 H N N 164 ILE HD11 H N N 165 ILE HD12 H N N 166 ILE HD13 H N N 167 ILE HXT H N N 168 LEU N N N N 169 LEU CA C N S 170 LEU C C N N 171 LEU O O N N 172 LEU CB C N N 173 LEU CG C N N 174 LEU CD1 C N N 175 LEU CD2 C N N 176 LEU OXT O N N 177 LEU H H N N 178 LEU H2 H N N 179 LEU HA H N N 180 LEU HB2 H N N 181 LEU HB3 H N N 182 LEU HG H N N 183 LEU HD11 H N N 184 LEU HD12 H N N 185 LEU HD13 H N N 186 LEU HD21 H N N 187 LEU HD22 H N N 188 LEU HD23 H N N 189 LEU HXT H N N 190 LYS N N N N 191 LYS CA C N S 192 LYS C C N N 193 LYS O O N N 194 LYS CB C N N 195 LYS CG C N N 196 LYS CD C N N 197 LYS CE C N N 198 LYS NZ N N N 199 LYS OXT O N N 200 LYS H H N N 201 LYS H2 H N N 202 LYS HA H N N 203 LYS HB2 H N N 204 LYS HB3 H N N 205 LYS HG2 H N N 206 LYS HG3 H N N 207 LYS HD2 H N N 208 LYS HD3 H N N 209 LYS HE2 H N N 210 LYS HE3 H N N 211 LYS HZ1 H N N 212 LYS HZ2 H N N 213 LYS HZ3 H N N 214 LYS HXT H N N 215 MET N N N N 216 MET CA C N S 217 MET C C N N 218 MET O O N N 219 MET CB C N N 220 MET CG C N N 221 MET SD S N N 222 MET CE C N N 223 MET OXT O N N 224 MET H H N N 225 MET H2 H N N 226 MET HA H N N 227 MET HB2 H N N 228 MET HB3 H N N 229 MET HG2 H N N 230 MET HG3 H N N 231 MET HE1 H N N 232 MET HE2 H N N 233 MET HE3 H N N 234 MET HXT H N N 235 PHE N N N N 236 PHE CA C N S 237 PHE C C N N 238 PHE O O N N 239 PHE CB C N N 240 PHE CG C Y N 241 PHE CD1 C Y N 242 PHE CD2 C Y N 243 PHE CE1 C Y N 244 PHE CE2 C Y N 245 PHE CZ C Y N 246 PHE OXT O N N 247 PHE H H N N 248 PHE H2 H N N 249 PHE HA H N N 250 PHE HB2 H N N 251 PHE HB3 H N N 252 PHE HD1 H N N 253 PHE HD2 H N N 254 PHE HE1 H N N 255 PHE HE2 H N N 256 PHE HZ H N N 257 PHE HXT H N N 258 PRO N N N N 259 PRO CA C N S 260 PRO C C N N 261 PRO O O N N 262 PRO CB C N N 263 PRO CG C N N 264 PRO CD C N N 265 PRO OXT O N N 266 PRO H H N N 267 PRO HA H N N 268 PRO HB2 H N N 269 PRO HB3 H N N 270 PRO HG2 H N N 271 PRO HG3 H N N 272 PRO HD2 H N N 273 PRO HD3 H N N 274 PRO HXT H N N 275 SER N N N N 276 SER CA C N S 277 SER C C N N 278 SER O O N N 279 SER CB C N N 280 SER OG O N N 281 SER OXT O N N 282 SER H H N N 283 SER H2 H N N 284 SER HA H N N 285 SER HB2 H N N 286 SER HB3 H N N 287 SER HG H N N 288 SER HXT H N N 289 THR N N N N 290 THR CA C N S 291 THR C C N N 292 THR O O N N 293 THR CB C N R 294 THR OG1 O N N 295 THR CG2 C N N 296 THR OXT O N N 297 THR H H N N 298 THR H2 H N N 299 THR HA H N N 300 THR HB H N N 301 THR HG1 H N N 302 THR HG21 H N N 303 THR HG22 H N N 304 THR HG23 H N N 305 THR HXT H N N 306 TRP N N N N 307 TRP CA C N S 308 TRP C C N N 309 TRP O O N N 310 TRP CB C N N 311 TRP CG C Y N 312 TRP CD1 C Y N 313 TRP CD2 C Y N 314 TRP NE1 N Y N 315 TRP CE2 C Y N 316 TRP CE3 C Y N 317 TRP CZ2 C Y N 318 TRP CZ3 C Y N 319 TRP CH2 C Y N 320 TRP OXT O N N 321 TRP H H N N 322 TRP H2 H N N 323 TRP HA H N N 324 TRP HB2 H N N 325 TRP HB3 H N N 326 TRP HD1 H N N 327 TRP HE1 H N N 328 TRP HE3 H N N 329 TRP HZ2 H N N 330 TRP HZ3 H N N 331 TRP HH2 H N N 332 TRP HXT H N N 333 TYR N N N N 334 TYR CA C N S 335 TYR C C N N 336 TYR O O N N 337 TYR CB C N N 338 TYR CG C Y N 339 TYR CD1 C Y N 340 TYR CD2 C Y N 341 TYR CE1 C Y N 342 TYR CE2 C Y N 343 TYR CZ C Y N 344 TYR OH O N N 345 TYR OXT O N N 346 TYR H H N N 347 TYR H2 H N N 348 TYR HA H N N 349 TYR HB2 H N N 350 TYR HB3 H N N 351 TYR HD1 H N N 352 TYR HD2 H N N 353 TYR HE1 H N N 354 TYR HE2 H N N 355 TYR HH H N N 356 TYR HXT H N N 357 VAL N N N N 358 VAL CA C N S 359 VAL C C N N 360 VAL O O N N 361 VAL CB C N N 362 VAL CG1 C N N 363 VAL CG2 C N N 364 VAL OXT O N N 365 VAL H H N N 366 VAL H2 H N N 367 VAL HA H N N 368 VAL HB H N N 369 VAL HG11 H N N 370 VAL HG12 H N N 371 VAL HG13 H N N 372 VAL HG21 H N N 373 VAL HG22 H N N 374 VAL HG23 H N N 375 VAL HXT H N N 376 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 HOH O H1 sing N N 137 HOH O H2 sing N N 138 ILE N CA sing N N 139 ILE N H sing N N 140 ILE N H2 sing N N 141 ILE CA C sing N N 142 ILE CA CB sing N N 143 ILE CA HA sing N N 144 ILE C O doub N N 145 ILE C OXT sing N N 146 ILE CB CG1 sing N N 147 ILE CB CG2 sing N N 148 ILE CB HB sing N N 149 ILE CG1 CD1 sing N N 150 ILE CG1 HG12 sing N N 151 ILE CG1 HG13 sing N N 152 ILE CG2 HG21 sing N N 153 ILE CG2 HG22 sing N N 154 ILE CG2 HG23 sing N N 155 ILE CD1 HD11 sing N N 156 ILE CD1 HD12 sing N N 157 ILE CD1 HD13 sing N N 158 ILE OXT HXT sing N N 159 LEU N CA sing N N 160 LEU N H sing N N 161 LEU N H2 sing N N 162 LEU CA C sing N N 163 LEU CA CB sing N N 164 LEU CA HA sing N N 165 LEU C O doub N N 166 LEU C OXT sing N N 167 LEU CB CG sing N N 168 LEU CB HB2 sing N N 169 LEU CB HB3 sing N N 170 LEU CG CD1 sing N N 171 LEU CG CD2 sing N N 172 LEU CG HG sing N N 173 LEU CD1 HD11 sing N N 174 LEU CD1 HD12 sing N N 175 LEU CD1 HD13 sing N N 176 LEU CD2 HD21 sing N N 177 LEU CD2 HD22 sing N N 178 LEU CD2 HD23 sing N N 179 LEU OXT HXT sing N N 180 LYS N CA sing N N 181 LYS N H sing N N 182 LYS N H2 sing N N 183 LYS CA C sing N N 184 LYS CA CB sing N N 185 LYS CA HA sing N N 186 LYS C O doub N N 187 LYS C OXT sing N N 188 LYS CB CG sing N N 189 LYS CB HB2 sing N N 190 LYS CB HB3 sing N N 191 LYS CG CD sing N N 192 LYS CG HG2 sing N N 193 LYS CG HG3 sing N N 194 LYS CD CE sing N N 195 LYS CD HD2 sing N N 196 LYS CD HD3 sing N N 197 LYS CE NZ sing N N 198 LYS CE HE2 sing N N 199 LYS CE HE3 sing N N 200 LYS NZ HZ1 sing N N 201 LYS NZ HZ2 sing N N 202 LYS NZ HZ3 sing N N 203 LYS OXT HXT sing N N 204 MET N CA sing N N 205 MET N H sing N N 206 MET N H2 sing N N 207 MET CA C sing N N 208 MET CA CB sing N N 209 MET CA HA sing N N 210 MET C O doub N N 211 MET C OXT sing N N 212 MET CB CG sing N N 213 MET CB HB2 sing N N 214 MET CB HB3 sing N N 215 MET CG SD sing N N 216 MET CG HG2 sing N N 217 MET CG HG3 sing N N 218 MET SD CE sing N N 219 MET CE HE1 sing N N 220 MET CE HE2 sing N N 221 MET CE HE3 sing N N 222 MET OXT HXT sing N N 223 PHE N CA sing N N 224 PHE N H sing N N 225 PHE N H2 sing N N 226 PHE CA C sing N N 227 PHE CA CB sing N N 228 PHE CA HA sing N N 229 PHE C O doub N N 230 PHE C OXT sing N N 231 PHE CB CG sing N N 232 PHE CB HB2 sing N N 233 PHE CB HB3 sing N N 234 PHE CG CD1 doub Y N 235 PHE CG CD2 sing Y N 236 PHE CD1 CE1 sing Y N 237 PHE CD1 HD1 sing N N 238 PHE CD2 CE2 doub Y N 239 PHE CD2 HD2 sing N N 240 PHE CE1 CZ doub Y N 241 PHE CE1 HE1 sing N N 242 PHE CE2 CZ sing Y N 243 PHE CE2 HE2 sing N N 244 PHE CZ HZ sing N N 245 PHE OXT HXT sing N N 246 PRO N CA sing N N 247 PRO N CD sing N N 248 PRO N H sing N N 249 PRO CA C sing N N 250 PRO CA CB sing N N 251 PRO CA HA sing N N 252 PRO C O doub N N 253 PRO C OXT sing N N 254 PRO CB CG sing N N 255 PRO CB HB2 sing N N 256 PRO CB HB3 sing N N 257 PRO CG CD sing N N 258 PRO CG HG2 sing N N 259 PRO CG HG3 sing N N 260 PRO CD HD2 sing N N 261 PRO CD HD3 sing N N 262 PRO OXT HXT sing N N 263 SER N CA sing N N 264 SER N H sing N N 265 SER N H2 sing N N 266 SER CA C sing N N 267 SER CA CB sing N N 268 SER CA HA sing N N 269 SER C O doub N N 270 SER C OXT sing N N 271 SER CB OG sing N N 272 SER CB HB2 sing N N 273 SER CB HB3 sing N N 274 SER OG HG sing N N 275 SER OXT HXT sing N N 276 THR N CA sing N N 277 THR N H sing N N 278 THR N H2 sing N N 279 THR CA C sing N N 280 THR CA CB sing N N 281 THR CA HA sing N N 282 THR C O doub N N 283 THR C OXT sing N N 284 THR CB OG1 sing N N 285 THR CB CG2 sing N N 286 THR CB HB sing N N 287 THR OG1 HG1 sing N N 288 THR CG2 HG21 sing N N 289 THR CG2 HG22 sing N N 290 THR CG2 HG23 sing N N 291 THR OXT HXT sing N N 292 TRP N CA sing N N 293 TRP N H sing N N 294 TRP N H2 sing N N 295 TRP CA C sing N N 296 TRP CA CB sing N N 297 TRP CA HA sing N N 298 TRP C O doub N N 299 TRP C OXT sing N N 300 TRP CB CG sing N N 301 TRP CB HB2 sing N N 302 TRP CB HB3 sing N N 303 TRP CG CD1 doub Y N 304 TRP CG CD2 sing Y N 305 TRP CD1 NE1 sing Y N 306 TRP CD1 HD1 sing N N 307 TRP CD2 CE2 doub Y N 308 TRP CD2 CE3 sing Y N 309 TRP NE1 CE2 sing Y N 310 TRP NE1 HE1 sing N N 311 TRP CE2 CZ2 sing Y N 312 TRP CE3 CZ3 doub Y N 313 TRP CE3 HE3 sing N N 314 TRP CZ2 CH2 doub Y N 315 TRP CZ2 HZ2 sing N N 316 TRP CZ3 CH2 sing Y N 317 TRP CZ3 HZ3 sing N N 318 TRP CH2 HH2 sing N N 319 TRP OXT HXT sing N N 320 TYR N CA sing N N 321 TYR N H sing N N 322 TYR N H2 sing N N 323 TYR CA C sing N N 324 TYR CA CB sing N N 325 TYR CA HA sing N N 326 TYR C O doub N N 327 TYR C OXT sing N N 328 TYR CB CG sing N N 329 TYR CB HB2 sing N N 330 TYR CB HB3 sing N N 331 TYR CG CD1 doub Y N 332 TYR CG CD2 sing Y N 333 TYR CD1 CE1 sing Y N 334 TYR CD1 HD1 sing N N 335 TYR CD2 CE2 doub Y N 336 TYR CD2 HD2 sing N N 337 TYR CE1 CZ doub Y N 338 TYR CE1 HE1 sing N N 339 TYR CE2 CZ sing Y N 340 TYR CE2 HE2 sing N N 341 TYR CZ OH sing N N 342 TYR OH HH sing N N 343 TYR OXT HXT sing N N 344 VAL N CA sing N N 345 VAL N H sing N N 346 VAL N H2 sing N N 347 VAL CA C sing N N 348 VAL CA CB sing N N 349 VAL CA HA sing N N 350 VAL C O doub N N 351 VAL C OXT sing N N 352 VAL CB CG1 sing N N 353 VAL CB CG2 sing N N 354 VAL CB HB sing N N 355 VAL CG1 HG11 sing N N 356 VAL CG1 HG12 sing N N 357 VAL CG1 HG13 sing N N 358 VAL CG2 HG21 sing N N 359 VAL CG2 HG22 sing N N 360 VAL CG2 HG23 sing N N 361 VAL OXT HXT sing N N 362 # _pdbx_initial_refinement_model.accession_code 1K38 _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.details 'Class D beta-lactamase OXA-2 from Salmonella typhimurium' # _atom_sites.entry_id 1NRF _atom_sites.fract_transf_matrix[1][1] 0.021811 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021811 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007681 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_