data_1ODF # _entry.id 1ODF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1ODF PDBE EBI-12211 WWPDB D_1290012211 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1ODF _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2003-02-19 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Li De La Sierra-Gallay, I.' 1 'Van Tilbeurgh, H.' 2 # _citation.id primary _citation.title 'Crystal Structure of the Ygr205W Protein from Saccharomyces Cerevisiae: Close Structural Resemblance to E.Coli Pantothenate Kinase' _citation.journal_abbrev 'Proteins: Struct.,Funct., Genet.' _citation.journal_volume 54 _citation.page_first 776 _citation.page_last ? _citation.year 2004 _citation.journal_id_ASTM PSFGEY _citation.country US _citation.journal_id_ISSN 0887-3585 _citation.journal_id_CSD 0867 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 14997573 _citation.pdbx_database_id_DOI 10.1002/PROT.10596 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Li De La Sierra-Gallay, I.' 1 primary 'Collinet, B.' 2 primary 'Graille, M.' 3 primary 'Quevillon-Cheruel, S.' 4 primary 'Liger, D.' 5 primary 'Minard, P.' 6 primary 'Blondeau, K.' 7 primary 'Henckes, G.' 8 primary 'Aufrere, R.' 9 primary 'Leulliot, N.' 10 primary 'Zhou, C.Z.' 11 primary 'Sorrel, I.' 12 primary 'Ferrer, J.L.' 13 primary 'Poupon, A.' 14 primary 'Janin, J.' 15 primary 'Van Tilbeurgh, H.' 16 # _cell.entry_id 1ODF _cell.length_a 64.850 _cell.length_b 64.850 _cell.length_c 140.130 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ODF _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'HYPOTHETICAL 33.3 KDA PROTEIN IN ADE3-SER2 INTERGENIC REGION' 33372.738 1 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 3 ? ? ? ? 4 water nat water 18.015 74 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name YGR205W # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MCDKSKTVLDYTIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQ LKLNEQFKNNKLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEG WFLGFNPILQGIENNDLLTGDMVDVNAKLFFYSDLLWRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTDEQ VHAFVDRYMPSYKLYLNDFVRSESLGSIATLTLGIDSNRNVYSTKTRCIE ; _entity_poly.pdbx_seq_one_letter_code_can ;MCDKSKTVLDYTIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQ LKLNEQFKNNKLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEG WFLGFNPILQGIENNDLLTGDMVDVNAKLFFYSDLLWRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTDEQ VHAFVDRYMPSYKLYLNDFVRSESLGSIATLTLGIDSNRNVYSTKTRCIE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 CYS n 1 3 ASP n 1 4 LYS n 1 5 SER n 1 6 LYS n 1 7 THR n 1 8 VAL n 1 9 LEU n 1 10 ASP n 1 11 TYR n 1 12 THR n 1 13 ILE n 1 14 GLU n 1 15 PHE n 1 16 LEU n 1 17 ASP n 1 18 LYS n 1 19 TYR n 1 20 ILE n 1 21 PRO n 1 22 GLU n 1 23 TRP n 1 24 PHE n 1 25 GLU n 1 26 THR n 1 27 GLY n 1 28 ASN n 1 29 LYS n 1 30 CYS n 1 31 PRO n 1 32 LEU n 1 33 PHE n 1 34 ILE n 1 35 PHE n 1 36 PHE n 1 37 SER n 1 38 GLY n 1 39 PRO n 1 40 GLN n 1 41 GLY n 1 42 SER n 1 43 GLY n 1 44 LYS n 1 45 SER n 1 46 PHE n 1 47 THR n 1 48 SER n 1 49 ILE n 1 50 GLN n 1 51 ILE n 1 52 TYR n 1 53 ASN n 1 54 HIS n 1 55 LEU n 1 56 MET n 1 57 GLU n 1 58 LYS n 1 59 TYR n 1 60 GLY n 1 61 GLY n 1 62 GLU n 1 63 LYS n 1 64 SER n 1 65 ILE n 1 66 GLY n 1 67 TYR n 1 68 ALA n 1 69 SER n 1 70 ILE n 1 71 ASP n 1 72 ASP n 1 73 PHE n 1 74 TYR n 1 75 LEU n 1 76 THR n 1 77 HIS n 1 78 GLU n 1 79 ASP n 1 80 GLN n 1 81 LEU n 1 82 LYS n 1 83 LEU n 1 84 ASN n 1 85 GLU n 1 86 GLN n 1 87 PHE n 1 88 LYS n 1 89 ASN n 1 90 ASN n 1 91 LYS n 1 92 LEU n 1 93 LEU n 1 94 GLN n 1 95 GLY n 1 96 ARG n 1 97 GLY n 1 98 LEU n 1 99 PRO n 1 100 GLY n 1 101 THR n 1 102 HIS n 1 103 ASP n 1 104 MET n 1 105 LYS n 1 106 LEU n 1 107 LEU n 1 108 GLN n 1 109 GLU n 1 110 VAL n 1 111 LEU n 1 112 ASN n 1 113 THR n 1 114 ILE n 1 115 PHE n 1 116 ASN n 1 117 ASN n 1 118 ASN n 1 119 GLU n 1 120 HIS n 1 121 PRO n 1 122 ASP n 1 123 GLN n 1 124 ASP n 1 125 THR n 1 126 VAL n 1 127 VAL n 1 128 LEU n 1 129 PRO n 1 130 LYS n 1 131 TYR n 1 132 ASP n 1 133 LYS n 1 134 SER n 1 135 GLN n 1 136 PHE n 1 137 LYS n 1 138 GLY n 1 139 GLU n 1 140 GLY n 1 141 ASP n 1 142 ARG n 1 143 CYS n 1 144 PRO n 1 145 THR n 1 146 GLY n 1 147 GLN n 1 148 LYS n 1 149 ILE n 1 150 LYS n 1 151 LEU n 1 152 PRO n 1 153 VAL n 1 154 ASP n 1 155 ILE n 1 156 PHE n 1 157 ILE n 1 158 LEU n 1 159 GLU n 1 160 GLY n 1 161 TRP n 1 162 PHE n 1 163 LEU n 1 164 GLY n 1 165 PHE n 1 166 ASN n 1 167 PRO n 1 168 ILE n 1 169 LEU n 1 170 GLN n 1 171 GLY n 1 172 ILE n 1 173 GLU n 1 174 ASN n 1 175 ASN n 1 176 ASP n 1 177 LEU n 1 178 LEU n 1 179 THR n 1 180 GLY n 1 181 ASP n 1 182 MET n 1 183 VAL n 1 184 ASP n 1 185 VAL n 1 186 ASN n 1 187 ALA n 1 188 LYS n 1 189 LEU n 1 190 PHE n 1 191 PHE n 1 192 TYR n 1 193 SER n 1 194 ASP n 1 195 LEU n 1 196 LEU n 1 197 TRP n 1 198 ARG n 1 199 ASN n 1 200 PRO n 1 201 GLU n 1 202 ILE n 1 203 LYS n 1 204 SER n 1 205 LEU n 1 206 GLY n 1 207 ILE n 1 208 VAL n 1 209 PHE n 1 210 THR n 1 211 THR n 1 212 ASP n 1 213 ASN n 1 214 ILE n 1 215 ASN n 1 216 ASN n 1 217 VAL n 1 218 TYR n 1 219 GLY n 1 220 TRP n 1 221 ARG n 1 222 LEU n 1 223 GLN n 1 224 GLN n 1 225 GLU n 1 226 HIS n 1 227 GLU n 1 228 LEU n 1 229 ILE n 1 230 SER n 1 231 LYS n 1 232 VAL n 1 233 GLY n 1 234 LYS n 1 235 GLY n 1 236 MET n 1 237 THR n 1 238 ASP n 1 239 GLU n 1 240 GLN n 1 241 VAL n 1 242 HIS n 1 243 ALA n 1 244 PHE n 1 245 VAL n 1 246 ASP n 1 247 ARG n 1 248 TYR n 1 249 MET n 1 250 PRO n 1 251 SER n 1 252 TYR n 1 253 LYS n 1 254 LEU n 1 255 TYR n 1 256 LEU n 1 257 ASN n 1 258 ASP n 1 259 PHE n 1 260 VAL n 1 261 ARG n 1 262 SER n 1 263 GLU n 1 264 SER n 1 265 LEU n 1 266 GLY n 1 267 SER n 1 268 ILE n 1 269 ALA n 1 270 THR n 1 271 LEU n 1 272 THR n 1 273 LEU n 1 274 GLY n 1 275 ILE n 1 276 ASP n 1 277 SER n 1 278 ASN n 1 279 ARG n 1 280 ASN n 1 281 VAL n 1 282 TYR n 1 283 SER n 1 284 THR n 1 285 LYS n 1 286 THR n 1 287 ARG n 1 288 CYS n 1 289 ILE n 1 290 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ;BAKER'S YEAST ; _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain S288C _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'SACCHAROMYCES CEREVISIAE' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4932 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'CLONED GENE' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code YG4F_YEAST _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P42938 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1ODF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 290 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P42938 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 290 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 290 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1ODF _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.8 _exptl_crystal.density_percent_sol 50 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.00 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '2.4M AMMONIUM SULFATE, 0.1M NA CITRATE PH5.6, pH 6.00' # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2001-04-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9719 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-1' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-1 _diffrn_source.pdbx_wavelength 0.9719 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1ODF _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.000 _reflns.d_resolution_high 2.250 _reflns.number_obs 14707 _reflns.number_all ? _reflns.percent_possible_obs 98.9 _reflns.pdbx_Rmerge_I_obs 0.05500 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 33.2000 _reflns.B_iso_Wilson_estimate 27.2 _reflns.pdbx_redundancy 6.450 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.25 _reflns_shell.d_res_low 2.32 _reflns_shell.percent_possible_all 98.4 _reflns_shell.Rmerge_I_obs 0.49900 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.900 _reflns_shell.pdbx_redundancy ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1ODF _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 13955 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF 10000 _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20 _refine.ls_d_res_high 2.25 _refine.ls_percent_reflns_obs 94 _refine.ls_R_factor_obs 0.2063 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2063 _refine.ls_R_factor_R_free 0.2597 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.7 _refine.ls_number_reflns_R_free 700 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 47 _refine.aniso_B[1][1] 7.698 _refine.aniso_B[2][2] 7.698 _refine.aniso_B[3][3] -15.395 _refine.aniso_B[1][2] 0 _refine.aniso_B[1][3] 0 _refine.aniso_B[2][3] 0 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'REGIONS A1-A4 AND A117-A122 DISORDERED' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 1ODF _refine_analyze.Luzzati_coordinate_error_obs 0.28 _refine_analyze.Luzzati_sigma_a_obs 0.30 _refine_analyze.Luzzati_d_res_low_obs 5 _refine_analyze.Luzzati_coordinate_error_free 0.38 _refine_analyze.Luzzati_sigma_a_free 0.36 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2270 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 28 _refine_hist.number_atoms_solvent 74 _refine_hist.number_atoms_total 2372 _refine_hist.d_res_high 2.25 _refine_hist.d_res_low 20 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.2 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 22.4 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.74 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 14 _refine_ls_shell.d_res_high 2.25 _refine_ls_shell.d_res_low 2.31 _refine_ls_shell.number_reflns_R_work 786 _refine_ls_shell.R_factor_R_work 0.2983 _refine_ls_shell.percent_reflns_obs 83.3 _refine_ls_shell.R_factor_R_free 0.3755 _refine_ls_shell.R_factor_R_free_error 0.037 _refine_ls_shell.percent_reflns_R_free 4.6 _refine_ls_shell.number_reflns_R_free 39 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 1ODF _struct.title 'Structure of YGR205w protein.' _struct.pdbx_descriptor 'HYPOTHETICAL 33.3 KDA PROTEIN IN ADE3-SER2 INTERGENIC REGION' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1ODF _struct_keywords.pdbx_keywords 'YEAST PROTEIN' _struct_keywords.text 'YEAST PROTEIN, ATP BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 7 ? GLU A 25 ? THR A 7 GLU A 25 1 ? 19 HELX_P HELX_P2 2 GLY A 43 ? GLY A 60 ? GLY A 43 GLY A 60 1 ? 18 HELX_P HELX_P3 3 GLY A 61 ? LYS A 63 ? GLY A 61 LYS A 63 5 ? 3 HELX_P HELX_P4 4 ASP A 71 ? PHE A 73 ? ASP A 71 PHE A 73 5 ? 3 HELX_P HELX_P5 5 THR A 76 ? PHE A 87 ? THR A 76 PHE A 87 1 ? 12 HELX_P HELX_P6 6 ASN A 90 ? GLN A 94 ? ASN A 90 GLN A 94 5 ? 5 HELX_P HELX_P7 7 ASP A 103 ? PHE A 115 ? ASP A 103 PHE A 115 1 ? 13 HELX_P HELX_P8 8 GLN A 135 ? GLU A 139 ? GLN A 135 GLU A 139 5 ? 5 HELX_P HELX_P9 9 ASP A 181 ? LEU A 196 ? ASP A 181 LEU A 196 1 ? 16 HELX_P HELX_P10 10 ASN A 215 ? GLY A 233 ? ASN A 215 GLY A 233 1 ? 19 HELX_P HELX_P11 11 THR A 237 ? ARG A 247 ? THR A 237 ARG A 247 1 ? 11 HELX_P HELX_P12 12 TYR A 248 ? GLU A 263 ? TYR A 248 GLU A 263 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LEU _struct_mon_prot_cis.label_seq_id 151 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LEU _struct_mon_prot_cis.auth_seq_id 151 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 152 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 152 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.30 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 6 ? AB ? 2 ? AC ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? parallel AA 2 3 ? parallel AA 3 4 ? parallel AA 4 5 ? parallel AA 5 6 ? anti-parallel AB 1 2 ? anti-parallel AC 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 ILE A 65 ? SER A 69 ? ILE A 65 SER A 69 AA 2 ILE A 155 ? GLY A 160 ? ILE A 155 GLY A 160 AA 3 LEU A 32 ? SER A 37 ? LEU A 32 SER A 37 AA 4 SER A 204 ? THR A 211 ? SER A 204 THR A 211 AA 5 ALA A 269 ? ILE A 275 ? ALA A 269 ILE A 275 AA 6 VAL A 281 ? ARG A 287 ? VAL A 281 ARG A 287 AB 1 THR A 125 ? LEU A 128 ? THR A 125 LEU A 128 AB 2 GLN A 147 ? LYS A 150 ? GLN A 147 LYS A 150 AC 1 TYR A 131 ? ASP A 132 ? TYR A 131 ASP A 132 AC 2 ASP A 141 ? ARG A 142 ? ASP A 141 ARG A 142 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N GLY A 66 ? N GLY A 66 O ILE A 155 ? O ILE A 155 AA 2 3 N PHE A 156 ? N PHE A 156 O LEU A 32 ? O LEU A 32 AA 3 4 N PHE A 35 ? N PHE A 35 O LEU A 205 ? O LEU A 205 AA 4 5 N GLY A 206 ? N GLY A 206 O ALA A 269 ? O ALA A 269 AA 5 6 O GLY A 274 ? O GLY A 274 N TYR A 282 ? N TYR A 282 AB 1 2 N LEU A 128 ? N LEU A 128 O GLN A 147 ? O GLN A 147 AC 1 2 N ASP A 132 ? N ASP A 132 O ASP A 141 ? O ASP A 141 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 11 'BINDING SITE FOR RESIDUE SO4 A 501' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE SO4 A 502' AC3 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE GOL A 504' AC4 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE GOL A 505' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 GLN A 40 ? GLN A 40 . ? 1_555 ? 2 AC1 11 GLY A 41 ? GLY A 41 . ? 1_555 ? 3 AC1 11 SER A 42 ? SER A 42 . ? 1_555 ? 4 AC1 11 GLY A 43 ? GLY A 43 . ? 1_555 ? 5 AC1 11 LYS A 44 ? LYS A 44 . ? 1_555 ? 6 AC1 11 SER A 45 ? SER A 45 . ? 1_555 ? 7 AC1 11 GLN A 170 ? GLN A 170 . ? 1_555 ? 8 AC1 11 GLY A 171 ? GLY A 171 . ? 1_555 ? 9 AC1 11 ILE A 172 ? ILE A 172 . ? 1_555 ? 10 AC1 11 HOH G . ? HOH A 2073 . ? 1_555 ? 11 AC1 11 HOH G . ? HOH A 2074 . ? 1_555 ? 12 AC2 4 TYR A 74 ? TYR A 74 . ? 1_555 ? 13 AC2 4 ARG A 96 ? ARG A 96 . ? 1_555 ? 14 AC2 4 LYS A 133 ? LYS A 133 . ? 1_555 ? 15 AC2 4 ASN A 174 ? ASN A 174 . ? 1_555 ? 16 AC3 3 THR A 284 ? THR A 284 . ? 1_555 ? 17 AC3 3 LYS A 285 ? LYS A 285 . ? 1_555 ? 18 AC3 3 THR A 286 ? THR A 286 . ? 1_555 ? 19 AC4 6 GLN A 108 ? GLN A 108 . ? 1_555 ? 20 AC4 6 LEU A 111 ? LEU A 111 . ? 1_555 ? 21 AC4 6 ASN A 112 ? ASN A 112 . ? 1_555 ? 22 AC4 6 LEU A 195 ? LEU A 195 . ? 1_555 ? 23 AC4 6 ASN A 199 ? ASN A 199 . ? 1_555 ? 24 AC4 6 GLU A 201 ? GLU A 201 . ? 1_555 ? # _database_PDB_matrix.entry_id 1ODF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1ODF _atom_sites.fract_transf_matrix[1][1] 0.015420 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015420 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007136 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 CYS 2 2 ? ? ? A . n A 1 3 ASP 3 3 ? ? ? A . n A 1 4 LYS 4 4 ? ? ? A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 LYS 6 6 6 LYS LYS A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 ASP 10 10 10 ASP ASP A . n A 1 11 TYR 11 11 11 TYR TYR A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 PHE 15 15 15 PHE PHE A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 ASP 17 17 17 ASP ASP A . n A 1 18 LYS 18 18 18 LYS LYS A . n A 1 19 TYR 19 19 19 TYR TYR A . n A 1 20 ILE 20 20 20 ILE ILE A . n A 1 21 PRO 21 21 21 PRO PRO A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 TRP 23 23 23 TRP TRP A . n A 1 24 PHE 24 24 24 PHE PHE A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 ASN 28 28 28 ASN ASN A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 CYS 30 30 30 CYS CYS A . n A 1 31 PRO 31 31 31 PRO PRO A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 PHE 33 33 33 PHE PHE A . n A 1 34 ILE 34 34 34 ILE ILE A . n A 1 35 PHE 35 35 35 PHE PHE A . n A 1 36 PHE 36 36 36 PHE PHE A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 GLY 38 38 38 GLY GLY A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 GLN 40 40 40 GLN GLN A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 SER 42 42 42 SER SER A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 LYS 44 44 44 LYS LYS A . n A 1 45 SER 45 45 45 SER SER A . n A 1 46 PHE 46 46 46 PHE PHE A . n A 1 47 THR 47 47 47 THR THR A . n A 1 48 SER 48 48 48 SER SER A . n A 1 49 ILE 49 49 49 ILE ILE A . n A 1 50 GLN 50 50 50 GLN GLN A . n A 1 51 ILE 51 51 51 ILE ILE A . n A 1 52 TYR 52 52 52 TYR TYR A . n A 1 53 ASN 53 53 53 ASN ASN A . n A 1 54 HIS 54 54 54 HIS HIS A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 MET 56 56 56 MET MET A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 LYS 58 58 58 LYS LYS A . n A 1 59 TYR 59 59 59 TYR TYR A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 GLY 61 61 61 GLY GLY A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 LYS 63 63 63 LYS LYS A . n A 1 64 SER 64 64 64 SER SER A . n A 1 65 ILE 65 65 65 ILE ILE A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 TYR 67 67 67 TYR TYR A . n A 1 68 ALA 68 68 68 ALA ALA A . n A 1 69 SER 69 69 69 SER SER A . n A 1 70 ILE 70 70 70 ILE ILE A . n A 1 71 ASP 71 71 71 ASP ASP A . n A 1 72 ASP 72 72 72 ASP ASP A . n A 1 73 PHE 73 73 73 PHE PHE A . n A 1 74 TYR 74 74 74 TYR TYR A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 THR 76 76 76 THR THR A . n A 1 77 HIS 77 77 77 HIS HIS A . n A 1 78 GLU 78 78 78 GLU GLU A . n A 1 79 ASP 79 79 79 ASP ASP A . n A 1 80 GLN 80 80 80 GLN GLN A . n A 1 81 LEU 81 81 81 LEU LEU A . n A 1 82 LYS 82 82 82 LYS LYS A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 ASN 84 84 84 ASN ASN A . n A 1 85 GLU 85 85 85 GLU GLU A . n A 1 86 GLN 86 86 86 GLN GLN A . n A 1 87 PHE 87 87 87 PHE PHE A . n A 1 88 LYS 88 88 88 LYS LYS A . n A 1 89 ASN 89 89 89 ASN ASN A . n A 1 90 ASN 90 90 90 ASN ASN A . n A 1 91 LYS 91 91 91 LYS LYS A . n A 1 92 LEU 92 92 92 LEU LEU A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 GLN 94 94 94 GLN GLN A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 ARG 96 96 96 ARG ARG A . n A 1 97 GLY 97 97 97 GLY GLY A . n A 1 98 LEU 98 98 98 LEU LEU A . n A 1 99 PRO 99 99 99 PRO PRO A . n A 1 100 GLY 100 100 100 GLY GLY A . n A 1 101 THR 101 101 101 THR THR A . n A 1 102 HIS 102 102 102 HIS HIS A . n A 1 103 ASP 103 103 103 ASP ASP A . n A 1 104 MET 104 104 104 MET MET A . n A 1 105 LYS 105 105 105 LYS LYS A . n A 1 106 LEU 106 106 106 LEU LEU A . n A 1 107 LEU 107 107 107 LEU LEU A . n A 1 108 GLN 108 108 108 GLN GLN A . n A 1 109 GLU 109 109 109 GLU GLU A . n A 1 110 VAL 110 110 110 VAL VAL A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 ASN 112 112 112 ASN ASN A . n A 1 113 THR 113 113 113 THR THR A . n A 1 114 ILE 114 114 114 ILE ILE A . n A 1 115 PHE 115 115 115 PHE PHE A . n A 1 116 ASN 116 116 116 ASN ASN A . n A 1 117 ASN 117 117 ? ? ? A . n A 1 118 ASN 118 118 ? ? ? A . n A 1 119 GLU 119 119 ? ? ? A . n A 1 120 HIS 120 120 ? ? ? A . n A 1 121 PRO 121 121 ? ? ? A . n A 1 122 ASP 122 122 ? ? ? A . n A 1 123 GLN 123 123 123 GLN GLN A . n A 1 124 ASP 124 124 124 ASP ASP A . n A 1 125 THR 125 125 125 THR THR A . n A 1 126 VAL 126 126 126 VAL VAL A . n A 1 127 VAL 127 127 127 VAL VAL A . n A 1 128 LEU 128 128 128 LEU LEU A . n A 1 129 PRO 129 129 129 PRO PRO A . n A 1 130 LYS 130 130 130 LYS LYS A . n A 1 131 TYR 131 131 131 TYR TYR A . n A 1 132 ASP 132 132 132 ASP ASP A . n A 1 133 LYS 133 133 133 LYS LYS A . n A 1 134 SER 134 134 134 SER SER A . n A 1 135 GLN 135 135 135 GLN GLN A . n A 1 136 PHE 136 136 136 PHE PHE A . n A 1 137 LYS 137 137 137 LYS LYS A . n A 1 138 GLY 138 138 138 GLY GLY A . n A 1 139 GLU 139 139 139 GLU GLU A . n A 1 140 GLY 140 140 140 GLY GLY A . n A 1 141 ASP 141 141 141 ASP ASP A . n A 1 142 ARG 142 142 142 ARG ARG A . n A 1 143 CYS 143 143 143 CYS CYS A . n A 1 144 PRO 144 144 144 PRO PRO A . n A 1 145 THR 145 145 145 THR THR A . n A 1 146 GLY 146 146 146 GLY GLY A . n A 1 147 GLN 147 147 147 GLN GLN A . n A 1 148 LYS 148 148 148 LYS LYS A . n A 1 149 ILE 149 149 149 ILE ILE A . n A 1 150 LYS 150 150 150 LYS LYS A . n A 1 151 LEU 151 151 151 LEU LEU A . n A 1 152 PRO 152 152 152 PRO PRO A . n A 1 153 VAL 153 153 153 VAL VAL A . n A 1 154 ASP 154 154 154 ASP ASP A . n A 1 155 ILE 155 155 155 ILE ILE A . n A 1 156 PHE 156 156 156 PHE PHE A . n A 1 157 ILE 157 157 157 ILE ILE A . n A 1 158 LEU 158 158 158 LEU LEU A . n A 1 159 GLU 159 159 159 GLU GLU A . n A 1 160 GLY 160 160 160 GLY GLY A . n A 1 161 TRP 161 161 161 TRP TRP A . n A 1 162 PHE 162 162 162 PHE PHE A . n A 1 163 LEU 163 163 163 LEU LEU A . n A 1 164 GLY 164 164 164 GLY GLY A . n A 1 165 PHE 165 165 165 PHE PHE A . n A 1 166 ASN 166 166 166 ASN ASN A . n A 1 167 PRO 167 167 167 PRO PRO A . n A 1 168 ILE 168 168 168 ILE ILE A . n A 1 169 LEU 169 169 169 LEU LEU A . n A 1 170 GLN 170 170 170 GLN GLN A . n A 1 171 GLY 171 171 171 GLY GLY A . n A 1 172 ILE 172 172 172 ILE ILE A . n A 1 173 GLU 173 173 173 GLU GLU A . n A 1 174 ASN 174 174 174 ASN ASN A . n A 1 175 ASN 175 175 175 ASN ASN A . n A 1 176 ASP 176 176 176 ASP ASP A . n A 1 177 LEU 177 177 177 LEU LEU A . n A 1 178 LEU 178 178 178 LEU LEU A . n A 1 179 THR 179 179 179 THR THR A . n A 1 180 GLY 180 180 180 GLY GLY A . n A 1 181 ASP 181 181 181 ASP ASP A . n A 1 182 MET 182 182 182 MET MET A . n A 1 183 VAL 183 183 183 VAL VAL A . n A 1 184 ASP 184 184 184 ASP ASP A . n A 1 185 VAL 185 185 185 VAL VAL A . n A 1 186 ASN 186 186 186 ASN ASN A . n A 1 187 ALA 187 187 187 ALA ALA A . n A 1 188 LYS 188 188 188 LYS LYS A . n A 1 189 LEU 189 189 189 LEU LEU A . n A 1 190 PHE 190 190 190 PHE PHE A . n A 1 191 PHE 191 191 191 PHE PHE A . n A 1 192 TYR 192 192 192 TYR TYR A . n A 1 193 SER 193 193 193 SER SER A . n A 1 194 ASP 194 194 194 ASP ASP A . n A 1 195 LEU 195 195 195 LEU LEU A . n A 1 196 LEU 196 196 196 LEU LEU A . n A 1 197 TRP 197 197 197 TRP TRP A . n A 1 198 ARG 198 198 198 ARG ARG A . n A 1 199 ASN 199 199 199 ASN ASN A . n A 1 200 PRO 200 200 200 PRO PRO A . n A 1 201 GLU 201 201 201 GLU GLU A . n A 1 202 ILE 202 202 202 ILE ILE A . n A 1 203 LYS 203 203 203 LYS LYS A . n A 1 204 SER 204 204 204 SER SER A . n A 1 205 LEU 205 205 205 LEU LEU A . n A 1 206 GLY 206 206 206 GLY GLY A . n A 1 207 ILE 207 207 207 ILE ILE A . n A 1 208 VAL 208 208 208 VAL VAL A . n A 1 209 PHE 209 209 209 PHE PHE A . n A 1 210 THR 210 210 210 THR THR A . n A 1 211 THR 211 211 211 THR THR A . n A 1 212 ASP 212 212 212 ASP ASP A . n A 1 213 ASN 213 213 213 ASN ASN A . n A 1 214 ILE 214 214 214 ILE ILE A . n A 1 215 ASN 215 215 215 ASN ASN A . n A 1 216 ASN 216 216 216 ASN ASN A . n A 1 217 VAL 217 217 217 VAL VAL A . n A 1 218 TYR 218 218 218 TYR TYR A . n A 1 219 GLY 219 219 219 GLY GLY A . n A 1 220 TRP 220 220 220 TRP TRP A . n A 1 221 ARG 221 221 221 ARG ARG A . n A 1 222 LEU 222 222 222 LEU LEU A . n A 1 223 GLN 223 223 223 GLN GLN A . n A 1 224 GLN 224 224 224 GLN GLN A . n A 1 225 GLU 225 225 225 GLU GLU A . n A 1 226 HIS 226 226 226 HIS HIS A . n A 1 227 GLU 227 227 227 GLU GLU A . n A 1 228 LEU 228 228 228 LEU LEU A . n A 1 229 ILE 229 229 229 ILE ILE A . n A 1 230 SER 230 230 230 SER SER A . n A 1 231 LYS 231 231 231 LYS LYS A . n A 1 232 VAL 232 232 232 VAL VAL A . n A 1 233 GLY 233 233 233 GLY GLY A . n A 1 234 LYS 234 234 234 LYS LYS A . n A 1 235 GLY 235 235 235 GLY GLY A . n A 1 236 MET 236 236 236 MET MET A . n A 1 237 THR 237 237 237 THR THR A . n A 1 238 ASP 238 238 238 ASP ASP A . n A 1 239 GLU 239 239 239 GLU GLU A . n A 1 240 GLN 240 240 240 GLN GLN A . n A 1 241 VAL 241 241 241 VAL VAL A . n A 1 242 HIS 242 242 242 HIS HIS A . n A 1 243 ALA 243 243 243 ALA ALA A . n A 1 244 PHE 244 244 244 PHE PHE A . n A 1 245 VAL 245 245 245 VAL VAL A . n A 1 246 ASP 246 246 246 ASP ASP A . n A 1 247 ARG 247 247 247 ARG ARG A . n A 1 248 TYR 248 248 248 TYR TYR A . n A 1 249 MET 249 249 249 MET MET A . n A 1 250 PRO 250 250 250 PRO PRO A . n A 1 251 SER 251 251 251 SER SER A . n A 1 252 TYR 252 252 252 TYR TYR A . n A 1 253 LYS 253 253 253 LYS LYS A . n A 1 254 LEU 254 254 254 LEU LEU A . n A 1 255 TYR 255 255 255 TYR TYR A . n A 1 256 LEU 256 256 256 LEU LEU A . n A 1 257 ASN 257 257 257 ASN ASN A . n A 1 258 ASP 258 258 258 ASP ASP A . n A 1 259 PHE 259 259 259 PHE PHE A . n A 1 260 VAL 260 260 260 VAL VAL A . n A 1 261 ARG 261 261 261 ARG ARG A . n A 1 262 SER 262 262 262 SER SER A . n A 1 263 GLU 263 263 263 GLU GLU A . n A 1 264 SER 264 264 264 SER SER A . n A 1 265 LEU 265 265 265 LEU LEU A . n A 1 266 GLY 266 266 266 GLY GLY A . n A 1 267 SER 267 267 267 SER SER A . n A 1 268 ILE 268 268 268 ILE ILE A . n A 1 269 ALA 269 269 269 ALA ALA A . n A 1 270 THR 270 270 270 THR THR A . n A 1 271 LEU 271 271 271 LEU LEU A . n A 1 272 THR 272 272 272 THR THR A . n A 1 273 LEU 273 273 273 LEU LEU A . n A 1 274 GLY 274 274 274 GLY GLY A . n A 1 275 ILE 275 275 275 ILE ILE A . n A 1 276 ASP 276 276 276 ASP ASP A . n A 1 277 SER 277 277 277 SER SER A . n A 1 278 ASN 278 278 278 ASN ASN A . n A 1 279 ARG 279 279 279 ARG ARG A . n A 1 280 ASN 280 280 280 ASN ASN A . n A 1 281 VAL 281 281 281 VAL VAL A . n A 1 282 TYR 282 282 282 TYR TYR A . n A 1 283 SER 283 283 283 SER SER A . n A 1 284 THR 284 284 284 THR THR A . n A 1 285 LYS 285 285 285 LYS LYS A . n A 1 286 THR 286 286 286 THR THR A . n A 1 287 ARG 287 287 287 ARG ARG A . n A 1 288 CYS 288 288 288 CYS CYS A . n A 1 289 ILE 289 289 289 ILE ILE A . n A 1 290 GLU 290 290 290 GLU GLU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 501 501 SO4 SO4 A . C 2 SO4 1 502 502 SO4 SO4 A . D 3 GOL 1 503 503 GOL GOL A . E 3 GOL 1 504 504 GOL GOL A . F 3 GOL 1 505 505 GOL GOL A . G 4 HOH 1 2001 2001 HOH HOH A . G 4 HOH 2 2002 2002 HOH HOH A . G 4 HOH 3 2003 2003 HOH HOH A . G 4 HOH 4 2004 2004 HOH HOH A . G 4 HOH 5 2005 2005 HOH HOH A . G 4 HOH 6 2006 2006 HOH HOH A . G 4 HOH 7 2007 2007 HOH HOH A . G 4 HOH 8 2008 2008 HOH HOH A . G 4 HOH 9 2009 2009 HOH HOH A . G 4 HOH 10 2010 2010 HOH HOH A . G 4 HOH 11 2011 2011 HOH HOH A . G 4 HOH 12 2012 2012 HOH HOH A . G 4 HOH 13 2013 2013 HOH HOH A . G 4 HOH 14 2014 2014 HOH HOH A . G 4 HOH 15 2015 2015 HOH HOH A . G 4 HOH 16 2016 2016 HOH HOH A . G 4 HOH 17 2017 2017 HOH HOH A . G 4 HOH 18 2018 2018 HOH HOH A . G 4 HOH 19 2019 2019 HOH HOH A . G 4 HOH 20 2020 2020 HOH HOH A . G 4 HOH 21 2021 2021 HOH HOH A . G 4 HOH 22 2022 2022 HOH HOH A . G 4 HOH 23 2023 2023 HOH HOH A . G 4 HOH 24 2024 2024 HOH HOH A . G 4 HOH 25 2025 2025 HOH HOH A . G 4 HOH 26 2026 2026 HOH HOH A . G 4 HOH 27 2027 2027 HOH HOH A . G 4 HOH 28 2028 2028 HOH HOH A . G 4 HOH 29 2029 2029 HOH HOH A . G 4 HOH 30 2030 2030 HOH HOH A . G 4 HOH 31 2031 2031 HOH HOH A . G 4 HOH 32 2032 2032 HOH HOH A . G 4 HOH 33 2033 2033 HOH HOH A . G 4 HOH 34 2034 2034 HOH HOH A . G 4 HOH 35 2035 2035 HOH HOH A . G 4 HOH 36 2036 2036 HOH HOH A . G 4 HOH 37 2037 2037 HOH HOH A . G 4 HOH 38 2038 2038 HOH HOH A . G 4 HOH 39 2039 2039 HOH HOH A . G 4 HOH 40 2040 2040 HOH HOH A . G 4 HOH 41 2041 2041 HOH HOH A . G 4 HOH 42 2042 2042 HOH HOH A . G 4 HOH 43 2043 2043 HOH HOH A . G 4 HOH 44 2044 2044 HOH HOH A . G 4 HOH 45 2045 2045 HOH HOH A . G 4 HOH 46 2046 2046 HOH HOH A . G 4 HOH 47 2047 2047 HOH HOH A . G 4 HOH 48 2048 2048 HOH HOH A . G 4 HOH 49 2049 2049 HOH HOH A . G 4 HOH 50 2050 2050 HOH HOH A . G 4 HOH 51 2051 2051 HOH HOH A . G 4 HOH 52 2052 2052 HOH HOH A . G 4 HOH 53 2053 2053 HOH HOH A . G 4 HOH 54 2054 2054 HOH HOH A . G 4 HOH 55 2055 2055 HOH HOH A . G 4 HOH 56 2056 2056 HOH HOH A . G 4 HOH 57 2057 2057 HOH HOH A . G 4 HOH 58 2058 2058 HOH HOH A . G 4 HOH 59 2059 2059 HOH HOH A . G 4 HOH 60 2060 2060 HOH HOH A . G 4 HOH 61 2061 2061 HOH HOH A . G 4 HOH 62 2062 2062 HOH HOH A . G 4 HOH 63 2063 2063 HOH HOH A . G 4 HOH 64 2064 2064 HOH HOH A . G 4 HOH 65 2065 2065 HOH HOH A . G 4 HOH 66 2066 2066 HOH HOH A . G 4 HOH 67 2067 2067 HOH HOH A . G 4 HOH 68 2068 2068 HOH HOH A . G 4 HOH 69 2069 2069 HOH HOH A . G 4 HOH 70 2070 2070 HOH HOH A . G 4 HOH 71 2071 2071 HOH HOH A . G 4 HOH 72 2072 2072 HOH HOH A . G 4 HOH 73 2073 2073 HOH HOH A . G 4 HOH 74 2074 2074 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-12-12 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.0 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SOLVE/RESOLVE phasing . ? 4 # _pdbx_entry_details.entry_id 1ODF _pdbx_entry_details.compound_details 'NUCLEOTIDE BINDING DOMAIN' _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE A 136 ? ? 37.04 58.48 2 1 LEU A 196 ? ? -117.70 -93.01 3 1 SER A 264 ? ? -140.47 26.97 4 1 ILE A 289 ? ? -31.38 104.04 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A CYS 2 ? A CYS 2 3 1 Y 1 A ASP 3 ? A ASP 3 4 1 Y 1 A LYS 4 ? A LYS 4 5 1 Y 1 A ASN 117 ? A ASN 117 6 1 Y 1 A ASN 118 ? A ASN 118 7 1 Y 1 A GLU 119 ? A GLU 119 8 1 Y 1 A HIS 120 ? A HIS 120 9 1 Y 1 A PRO 121 ? A PRO 121 10 1 Y 1 A ASP 122 ? A ASP 122 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 GLYCEROL GOL 4 water HOH #