data_1ODG # _entry.id 1ODG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.382 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1ODG pdb_00001odg 10.2210/pdb1odg/pdb PDBE EBI-12201 ? ? WWPDB D_1290012201 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1CW0 unspecified 'CRYSTAL STRUCTURE ANALYSIS OF VERY SHORT PATCH REPAIR (VSR) ENDONUCLEASE IN COMPLEX WITH A DUPLEX DEOXYRIBONUCLEIC ACID' PDB 1VSR unspecified 'VERY SHORT PATCH REPAIR (VSR) ENDONUCLEASE FROM ESCHERICHIA COLI' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1ODG _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2003-02-19 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bunting, K.A.' 1 'Roe, S.M.' 2 'Headley, A.' 3 'Brown, T.' 4 'Savva, R.' 5 'Pearl, L.H.' 6 # _citation.id primary _citation.title ;Crystal Structure of the Escherichia Coli Dcm Very-Short-Patch DNA Repair Endonuclease Bound to its Reaction Product-Site in a DNA Superhelix ; _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 31 _citation.page_first 1633 _citation.page_last ? _citation.year 2003 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12626704 _citation.pdbx_database_id_DOI 10.1093/NAR/GKG273 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bunting, K.A.' 1 ? primary 'Roe, S.M.' 2 ? primary 'Headley, A.' 3 ? primary 'Brown, T.' 4 ? primary 'Savva, R.' 5 ? primary 'Pearl, L.H.' 6 ? # _cell.entry_id 1ODG _cell.length_a 102.805 _cell.length_b 102.805 _cell.length_c 64.290 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ODG _symmetry.space_group_name_H-M 'P 61' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DNA MISMATCH ENDONUCLEASE' 15568.826 1 ? ? ? ? 2 polymer nat "5'-D(*TP*AP*GP*GP*CP*5CM*TP*GP*GP*AP*TP*CP)-3'" 3692.430 2 ? ? ? ? 3 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 4 water nat water 18.015 81 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'VERY SHORT PATCH REPAIR PROTEIN, VSR MISMATCH ENDONUCLEASE, V.ECOKDCM, VSR, B1960' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;AIEKRLASLLTGQGLAFRVQDASLPGRPDFVVDEYRCVIFTHGCFWHHHHCYLFKVPATRTEFWLEKIGKNVERDRRDIS RLQELGWRVLIVWECALRGREKLTDEALTERLEEWICGEGASAQIDTQGIHLLA ; ;AIEKRLASLLTGQGLAFRVQDASLPGRPDFVVDEYRCVIFTHGCFWHHHHCYLFKVPATRTEFWLEKIGKNVERDRRDIS RLQELGWRVLIVWECALRGREKLTDEALTERLEEWICGEGASAQIDTQGIHLLA ; A ? 2 polydeoxyribonucleotide no yes '(DT)(DA)(DG)(DG)(DC)(5CM)(DT)(DG)(DG)(DA)(DT)(DC)' TAGGCCTGGATC F,W ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 ILE n 1 3 GLU n 1 4 LYS n 1 5 ARG n 1 6 LEU n 1 7 ALA n 1 8 SER n 1 9 LEU n 1 10 LEU n 1 11 THR n 1 12 GLY n 1 13 GLN n 1 14 GLY n 1 15 LEU n 1 16 ALA n 1 17 PHE n 1 18 ARG n 1 19 VAL n 1 20 GLN n 1 21 ASP n 1 22 ALA n 1 23 SER n 1 24 LEU n 1 25 PRO n 1 26 GLY n 1 27 ARG n 1 28 PRO n 1 29 ASP n 1 30 PHE n 1 31 VAL n 1 32 VAL n 1 33 ASP n 1 34 GLU n 1 35 TYR n 1 36 ARG n 1 37 CYS n 1 38 VAL n 1 39 ILE n 1 40 PHE n 1 41 THR n 1 42 HIS n 1 43 GLY n 1 44 CYS n 1 45 PHE n 1 46 TRP n 1 47 HIS n 1 48 HIS n 1 49 HIS n 1 50 HIS n 1 51 CYS n 1 52 TYR n 1 53 LEU n 1 54 PHE n 1 55 LYS n 1 56 VAL n 1 57 PRO n 1 58 ALA n 1 59 THR n 1 60 ARG n 1 61 THR n 1 62 GLU n 1 63 PHE n 1 64 TRP n 1 65 LEU n 1 66 GLU n 1 67 LYS n 1 68 ILE n 1 69 GLY n 1 70 LYS n 1 71 ASN n 1 72 VAL n 1 73 GLU n 1 74 ARG n 1 75 ASP n 1 76 ARG n 1 77 ARG n 1 78 ASP n 1 79 ILE n 1 80 SER n 1 81 ARG n 1 82 LEU n 1 83 GLN n 1 84 GLU n 1 85 LEU n 1 86 GLY n 1 87 TRP n 1 88 ARG n 1 89 VAL n 1 90 LEU n 1 91 ILE n 1 92 VAL n 1 93 TRP n 1 94 GLU n 1 95 CYS n 1 96 ALA n 1 97 LEU n 1 98 ARG n 1 99 GLY n 1 100 ARG n 1 101 GLU n 1 102 LYS n 1 103 LEU n 1 104 THR n 1 105 ASP n 1 106 GLU n 1 107 ALA n 1 108 LEU n 1 109 THR n 1 110 GLU n 1 111 ARG n 1 112 LEU n 1 113 GLU n 1 114 GLU n 1 115 TRP n 1 116 ILE n 1 117 CYS n 1 118 GLY n 1 119 GLU n 1 120 GLY n 1 121 ALA n 1 122 SER n 1 123 ALA n 1 124 GLN n 1 125 ILE n 1 126 ASP n 1 127 THR n 1 128 GLN n 1 129 GLY n 1 130 ILE n 1 131 HIS n 1 132 LEU n 1 133 LEU n 1 134 ALA n 2 1 DT n 2 2 DA n 2 3 DG n 2 4 DG n 2 5 DC n 2 6 5CM n 2 7 DT n 2 8 DG n 2 9 DG n 2 10 DA n 2 11 DT n 2 12 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'B834 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET28 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _entity_src_nat.entity_id 2 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'ESCHERICHIA COLI' _entity_src_nat.pdbx_ncbi_taxonomy_id 562 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP VSR_ECOLI 1 ? ? P09184 ? 2 PDB 1ODG 2 ? ? 1ODG ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1ODG A 1 ? 134 ? P09184 22 ? 155 ? 23 156 2 2 1ODG F 1 ? 12 ? 1ODG 1 ? 12 ? 1 12 3 2 1ODG W 1 ? 12 ? 1ODG 1 ? 12 ? 1 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5CM 'DNA linking' n "5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O7 P' 321.224 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 1ODG _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4.20 _exptl_crystal.density_percent_sol 70.70 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.50 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;25 MM HEPES PH7.0, 75 MM NACL, 15% PEG 8000, 50 MM SODIUM CACODYLATE PH 6.5, 75 MM AMMONIUM SULPHATE AND 10% GLYCEROL PROTEIN 2.5 MG/ML ; # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2000-02-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.933 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-2' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-2 _diffrn_source.pdbx_wavelength 0.933 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1ODG _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 2.750 _reflns.number_obs 10084 _reflns.number_all ? _reflns.percent_possible_obs 99.0 _reflns.pdbx_Rmerge_I_obs 0.07000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 6.9000 _reflns.B_iso_Wilson_estimate 105 _reflns.pdbx_redundancy 4.900 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.75 _reflns_shell.d_res_low 2.90 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.38400 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.000 _reflns_shell.pdbx_redundancy 5.00 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1ODG _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 9535 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 24.7 _refine.ls_d_res_high 2.8 _refine.ls_percent_reflns_obs 98.7 _refine.ls_R_factor_obs 0.2873 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2873 _refine.ls_R_factor_R_free 0.3561 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.0 _refine.ls_number_reflns_R_free 923 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] -15.190 _refine.aniso_B[2][2] -15.190 _refine.aniso_B[3][3] 30.380 _refine.aniso_B[1][2] -6.172 _refine.aniso_B[1][3] 0.0 _refine.aniso_B[2][3] 0.0 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.318 _refine.solvent_model_param_bsol 74.25 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1CW0' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1092 _refine_hist.pdbx_number_atoms_nucleic_acid 498 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 81 _refine_hist.number_atoms_total 1672 _refine_hist.d_res_high 2.8 _refine_hist.d_res_low 24.7 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.008265 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.30641 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.372 1.5 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.381 2.0 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.325 2.0 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 3.963 2.5 ? ? 'X-RAY DIFFRACTION' ? # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 LHP_DNA-RNA.PARAM LHP_DNA-RNA.TOP 'X-RAY DIFFRACTION' 3 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' 4 ION.PARAM ION.TOP # _struct.entry_id 1ODG _struct.title 'Very-short-patch DNA repair endonuclease bound to its reaction product site' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1ODG _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'HYDROLASE, DNA REPAIR, ENDONUCLEASE, VERY SHORT PATCH REPAIR, DNA REPAI HYDROLASE, NUCLEASE, ZINC, METAL-BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? # _struct_biol.id 1 _struct_biol.details ;THE TRIMERIC ASSEMBLY DESCRIBED HERE IS FORMED BYTHE COMPLEX OF PROTEIN CHAIN A WITH DNA CHAINS F,W ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ILE A 2 ? THR A 11 ? ILE A 24 THR A 33 1 ? 10 HELX_P HELX_P2 2 GLY A 12 ? GLY A 14 ? GLY A 34 GLY A 36 5 ? 3 HELX_P HELX_P3 3 ARG A 60 ? LEU A 85 ? ARG A 82 LEU A 107 1 ? 26 HELX_P HELX_P4 4 GLU A 94 ? LEU A 97 ? GLU A 116 LEU A 119 5 ? 4 HELX_P HELX_P5 5 THR A 104 ? CYS A 117 ? THR A 126 CYS A 139 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DC 5 "O3'" ? ? ? 1_555 B 5CM 6 P ? ? F DC 5 F 5CM 6 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale2 covale both ? B 5CM 6 "O3'" ? ? ? 1_555 B DT 7 P ? ? F 5CM 6 F DT 7 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale3 covale both ? C DC 5 "O3'" ? ? ? 1_555 C 5CM 6 P ? ? W DC 5 W 5CM 6 1_555 ? ? ? ? ? ? ? 1.614 ? ? covale4 covale both ? C 5CM 6 "O3'" ? ? ? 1_555 C DT 7 P ? ? W 5CM 6 W DT 7 1_555 ? ? ? ? ? ? ? 1.620 ? ? metalc1 metalc ? ? A CYS 44 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 66 A ZN 200 1_555 ? ? ? ? ? ? ? 2.145 ? ? metalc2 metalc ? ? A HIS 49 ND1 ? ? ? 1_555 D ZN . ZN ? ? A HIS 71 A ZN 200 1_555 ? ? ? ? ? ? ? 1.859 ? ? metalc3 metalc ? ? A CYS 51 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 73 A ZN 200 1_555 ? ? ? ? ? ? ? 1.948 ? ? metalc4 metalc ? ? A CYS 95 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 117 A ZN 200 1_555 ? ? ? ? ? ? ? 2.508 ? ? hydrog1 hydrog ? ? B DT 1 N3 ? ? ? 1_555 C DG 8 O6 ? ? F DT 1 W DG 8 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog2 hydrog ? ? B DT 1 O2 ? ? ? 1_555 C DG 8 N1 ? ? F DT 1 W DG 8 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog3 hydrog ? ? B DA 2 N6 ? ? ? 1_555 C DT 7 O4 ? ? F DA 2 W DT 7 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog4 hydrog ? ? B DA 2 N7 ? ? ? 1_555 C DT 7 N3 ? ? F DA 2 W DT 7 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog5 hydrog ? ? B DG 3 N1 ? ? ? 1_555 C 5CM 6 N3 ? ? F DG 3 W 5CM 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DG 3 N2 ? ? ? 1_555 C 5CM 6 O2 ? ? F DG 3 W 5CM 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DG 3 O6 ? ? ? 1_555 C 5CM 6 N4 ? ? F DG 3 W 5CM 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DG 4 N1 ? ? ? 1_555 C DC 5 N3 ? ? F DG 4 W DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DG 4 N2 ? ? ? 1_555 C DC 5 O2 ? ? F DG 4 W DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DG 4 O6 ? ? ? 1_555 C DC 5 N4 ? ? F DG 4 W DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DC 5 N3 ? ? ? 1_555 C DG 4 N1 ? ? F DC 5 W DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DC 5 N4 ? ? ? 1_555 C DG 4 O6 ? ? F DC 5 W DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DC 5 O2 ? ? ? 1_555 C DG 4 N2 ? ? F DC 5 W DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B 5CM 6 N3 ? ? ? 1_555 C DG 3 N1 ? ? F 5CM 6 W DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B 5CM 6 N4 ? ? ? 1_555 C DG 3 O6 ? ? F 5CM 6 W DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B 5CM 6 O2 ? ? ? 1_555 C DG 3 N2 ? ? F 5CM 6 W DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DT 7 N3 ? ? ? 1_555 C DA 2 N7 ? ? F DT 7 W DA 2 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog18 hydrog ? ? B DT 7 O4 ? ? ? 1_555 C DA 2 N6 ? ? F DT 7 W DA 2 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog19 hydrog ? ? B DG 8 N1 ? ? ? 1_555 C DT 1 O2 ? ? F DG 8 W DT 1 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog20 hydrog ? ? B DG 8 O6 ? ? ? 1_555 C DT 1 N3 ? ? F DG 8 W DT 1 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? parallel AA 4 5 ? parallel AA 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 PHE A 17 ? VAL A 19 ? PHE A 39 VAL A 41 AA 2 PHE A 30 ? VAL A 32 ? PHE A 52 VAL A 54 AA 3 CYS A 37 ? PHE A 40 ? CYS A 59 PHE A 62 AA 4 ARG A 88 ? VAL A 92 ? ARG A 110 VAL A 114 AA 5 ALA A 123 ? ASP A 126 ? ALA A 145 ASP A 148 AA 6 GLY A 129 ? LEU A 132 ? GLY A 151 LEU A 154 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N ARG A 18 ? N ARG A 40 O VAL A 31 ? O VAL A 53 AA 2 3 N VAL A 32 ? N VAL A 54 O CYS A 37 ? O CYS A 59 AA 3 4 N VAL A 38 ? N VAL A 60 O ARG A 88 ? O ARG A 110 AA 4 5 N ILE A 91 ? N ILE A 113 O ALA A 123 ? O ALA A 145 AA 5 6 N ASP A 126 ? N ASP A 148 O GLY A 129 ? O GLY A 151 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id ZN _struct_site.pdbx_auth_seq_id 200 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE ZN A 200' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 44 ? CYS A 66 . ? 1_555 ? 2 AC1 4 HIS A 49 ? HIS A 71 . ? 1_555 ? 3 AC1 4 CYS A 51 ? CYS A 73 . ? 1_555 ? 4 AC1 4 CYS A 95 ? CYS A 117 . ? 1_555 ? # _database_PDB_matrix.entry_id 1ODG _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1ODG _atom_sites.fract_transf_matrix[1][1] 0.009727 _atom_sites.fract_transf_matrix[1][2] 0.005616 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011232 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015554 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 23 23 ALA ALA A . n A 1 2 ILE 2 24 24 ILE ILE A . n A 1 3 GLU 3 25 25 GLU GLU A . n A 1 4 LYS 4 26 26 LYS LYS A . n A 1 5 ARG 5 27 27 ARG ARG A . n A 1 6 LEU 6 28 28 LEU LEU A . n A 1 7 ALA 7 29 29 ALA ALA A . n A 1 8 SER 8 30 30 SER SER A . n A 1 9 LEU 9 31 31 LEU LEU A . n A 1 10 LEU 10 32 32 LEU LEU A . n A 1 11 THR 11 33 33 THR THR A . n A 1 12 GLY 12 34 34 GLY GLY A . n A 1 13 GLN 13 35 35 GLN GLN A . n A 1 14 GLY 14 36 36 GLY GLY A . n A 1 15 LEU 15 37 37 LEU LEU A . n A 1 16 ALA 16 38 38 ALA ALA A . n A 1 17 PHE 17 39 39 PHE PHE A . n A 1 18 ARG 18 40 40 ARG ARG A . n A 1 19 VAL 19 41 41 VAL VAL A . n A 1 20 GLN 20 42 42 GLN GLN A . n A 1 21 ASP 21 43 43 ASP ASP A . n A 1 22 ALA 22 44 44 ALA ALA A . n A 1 23 SER 23 45 45 SER SER A . n A 1 24 LEU 24 46 46 LEU LEU A . n A 1 25 PRO 25 47 47 PRO PRO A . n A 1 26 GLY 26 48 48 GLY GLY A . n A 1 27 ARG 27 49 49 ARG ARG A . n A 1 28 PRO 28 50 50 PRO PRO A . n A 1 29 ASP 29 51 51 ASP ASP A . n A 1 30 PHE 30 52 52 PHE PHE A . n A 1 31 VAL 31 53 53 VAL VAL A . n A 1 32 VAL 32 54 54 VAL VAL A . n A 1 33 ASP 33 55 55 ASP ASP A . n A 1 34 GLU 34 56 56 GLU GLU A . n A 1 35 TYR 35 57 57 TYR TYR A . n A 1 36 ARG 36 58 58 ARG ARG A . n A 1 37 CYS 37 59 59 CYS CYS A . n A 1 38 VAL 38 60 60 VAL VAL A . n A 1 39 ILE 39 61 61 ILE ILE A . n A 1 40 PHE 40 62 62 PHE PHE A . n A 1 41 THR 41 63 63 THR THR A . n A 1 42 HIS 42 64 64 HIS HIS A . n A 1 43 GLY 43 65 65 GLY GLY A . n A 1 44 CYS 44 66 66 CYS CYS A . n A 1 45 PHE 45 67 67 PHE PHE A . n A 1 46 TRP 46 68 68 TRP TRP A . n A 1 47 HIS 47 69 69 HIS HIS A . n A 1 48 HIS 48 70 70 HIS HIS A . n A 1 49 HIS 49 71 71 HIS HIS A . n A 1 50 HIS 50 72 72 HIS HIS A . n A 1 51 CYS 51 73 73 CYS CYS A . n A 1 52 TYR 52 74 74 TYR TYR A . n A 1 53 LEU 53 75 75 LEU LEU A . n A 1 54 PHE 54 76 76 PHE PHE A . n A 1 55 LYS 55 77 77 LYS LYS A . n A 1 56 VAL 56 78 78 VAL VAL A . n A 1 57 PRO 57 79 79 PRO PRO A . n A 1 58 ALA 58 80 80 ALA ALA A . n A 1 59 THR 59 81 81 THR THR A . n A 1 60 ARG 60 82 82 ARG ARG A . n A 1 61 THR 61 83 83 THR THR A . n A 1 62 GLU 62 84 84 GLU GLU A . n A 1 63 PHE 63 85 85 PHE PHE A . n A 1 64 TRP 64 86 86 TRP TRP A . n A 1 65 LEU 65 87 87 LEU LEU A . n A 1 66 GLU 66 88 88 GLU GLU A . n A 1 67 LYS 67 89 89 LYS LYS A . n A 1 68 ILE 68 90 90 ILE ILE A . n A 1 69 GLY 69 91 91 GLY GLY A . n A 1 70 LYS 70 92 92 LYS LYS A . n A 1 71 ASN 71 93 93 ASN ASN A . n A 1 72 VAL 72 94 94 VAL VAL A . n A 1 73 GLU 73 95 95 GLU GLU A . n A 1 74 ARG 74 96 96 ARG ARG A . n A 1 75 ASP 75 97 97 ASP ASP A . n A 1 76 ARG 76 98 98 ARG ARG A . n A 1 77 ARG 77 99 99 ARG ARG A . n A 1 78 ASP 78 100 100 ASP ASP A . n A 1 79 ILE 79 101 101 ILE ILE A . n A 1 80 SER 80 102 102 SER SER A . n A 1 81 ARG 81 103 103 ARG ARG A . n A 1 82 LEU 82 104 104 LEU LEU A . n A 1 83 GLN 83 105 105 GLN GLN A . n A 1 84 GLU 84 106 106 GLU GLU A . n A 1 85 LEU 85 107 107 LEU LEU A . n A 1 86 GLY 86 108 108 GLY GLY A . n A 1 87 TRP 87 109 109 TRP TRP A . n A 1 88 ARG 88 110 110 ARG ARG A . n A 1 89 VAL 89 111 111 VAL VAL A . n A 1 90 LEU 90 112 112 LEU LEU A . n A 1 91 ILE 91 113 113 ILE ILE A . n A 1 92 VAL 92 114 114 VAL VAL A . n A 1 93 TRP 93 115 115 TRP TRP A . n A 1 94 GLU 94 116 116 GLU GLU A . n A 1 95 CYS 95 117 117 CYS CYS A . n A 1 96 ALA 96 118 118 ALA ALA A . n A 1 97 LEU 97 119 119 LEU LEU A . n A 1 98 ARG 98 120 120 ARG ARG A . n A 1 99 GLY 99 121 121 GLY GLY A . n A 1 100 ARG 100 122 122 ARG ARG A . n A 1 101 GLU 101 123 123 GLU GLU A . n A 1 102 LYS 102 124 124 LYS LYS A . n A 1 103 LEU 103 125 125 LEU LEU A . n A 1 104 THR 104 126 126 THR THR A . n A 1 105 ASP 105 127 127 ASP ASP A . n A 1 106 GLU 106 128 128 GLU GLU A . n A 1 107 ALA 107 129 129 ALA ALA A . n A 1 108 LEU 108 130 130 LEU LEU A . n A 1 109 THR 109 131 131 THR THR A . n A 1 110 GLU 110 132 132 GLU GLU A . n A 1 111 ARG 111 133 133 ARG ARG A . n A 1 112 LEU 112 134 134 LEU LEU A . n A 1 113 GLU 113 135 135 GLU GLU A . n A 1 114 GLU 114 136 136 GLU GLU A . n A 1 115 TRP 115 137 137 TRP TRP A . n A 1 116 ILE 116 138 138 ILE ILE A . n A 1 117 CYS 117 139 139 CYS CYS A . n A 1 118 GLY 118 140 140 GLY GLY A . n A 1 119 GLU 119 141 141 GLU GLU A . n A 1 120 GLY 120 142 142 GLY GLY A . n A 1 121 ALA 121 143 143 ALA ALA A . n A 1 122 SER 122 144 144 SER SER A . n A 1 123 ALA 123 145 145 ALA ALA A . n A 1 124 GLN 124 146 146 GLN GLN A . n A 1 125 ILE 125 147 147 ILE ILE A . n A 1 126 ASP 126 148 148 ASP ASP A . n A 1 127 THR 127 149 149 THR THR A . n A 1 128 GLN 128 150 150 GLN GLN A . n A 1 129 GLY 129 151 151 GLY GLY A . n A 1 130 ILE 130 152 152 ILE ILE A . n A 1 131 HIS 131 153 153 HIS HIS A . n A 1 132 LEU 132 154 154 LEU LEU A . n A 1 133 LEU 133 155 155 LEU LEU A . n A 1 134 ALA 134 156 156 ALA ALA A . n B 2 1 DT 1 1 1 DT DT F . n B 2 2 DA 2 2 2 DA DA F . n B 2 3 DG 3 3 3 DG DG F . n B 2 4 DG 4 4 4 DG DG F . n B 2 5 DC 5 5 5 DC DC F . n B 2 6 5CM 6 6 6 5CM 5CM F . n B 2 7 DT 7 7 7 DT DT F . n B 2 8 DG 8 8 8 DG DG F . n B 2 9 DG 9 9 9 DG DG F . n B 2 10 DA 10 10 10 DA DA F . n B 2 11 DT 11 11 11 DT DT F . n B 2 12 DC 12 12 12 DC DC F . n C 2 1 DT 1 1 1 DT DT W . n C 2 2 DA 2 2 2 DA DA W . n C 2 3 DG 3 3 3 DG DG W . n C 2 4 DG 4 4 4 DG DG W . n C 2 5 DC 5 5 5 DC DC W . n C 2 6 5CM 6 6 6 5CM 5CM W . n C 2 7 DT 7 7 7 DT DT W . n C 2 8 DG 8 8 8 DG DG W . n C 2 9 DG 9 9 9 DG DG W . n C 2 10 DA 10 10 10 DA DA W . n C 2 11 DT 11 11 11 DT DT W . n C 2 12 DC 12 12 12 DC DC W . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 ZN 1 200 200 ZN ZN A . E 4 HOH 1 2001 2001 HOH HOH A . E 4 HOH 2 2002 2002 HOH HOH A . E 4 HOH 3 2003 2003 HOH HOH A . E 4 HOH 4 2004 2004 HOH HOH A . E 4 HOH 5 2005 2005 HOH HOH A . E 4 HOH 6 2006 2006 HOH HOH A . E 4 HOH 7 2007 2007 HOH HOH A . E 4 HOH 8 2008 2008 HOH HOH A . E 4 HOH 9 2009 2009 HOH HOH A . E 4 HOH 10 2010 2010 HOH HOH A . E 4 HOH 11 2011 2011 HOH HOH A . E 4 HOH 12 2012 2012 HOH HOH A . E 4 HOH 13 2013 2013 HOH HOH A . E 4 HOH 14 2014 2014 HOH HOH A . E 4 HOH 15 2015 2015 HOH HOH A . E 4 HOH 16 2016 2016 HOH HOH A . E 4 HOH 17 2017 2017 HOH HOH A . E 4 HOH 18 2018 2018 HOH HOH A . E 4 HOH 19 2019 2019 HOH HOH A . E 4 HOH 20 2020 2020 HOH HOH A . E 4 HOH 21 2021 2021 HOH HOH A . E 4 HOH 22 2022 2022 HOH HOH A . E 4 HOH 23 2023 2023 HOH HOH A . E 4 HOH 24 2024 2024 HOH HOH A . E 4 HOH 25 2025 2025 HOH HOH A . E 4 HOH 26 2026 2026 HOH HOH A . E 4 HOH 27 2027 2027 HOH HOH A . E 4 HOH 28 2028 2028 HOH HOH A . E 4 HOH 29 2029 2029 HOH HOH A . E 4 HOH 30 2030 2030 HOH HOH A . E 4 HOH 31 2031 2031 HOH HOH A . E 4 HOH 32 2032 2032 HOH HOH A . E 4 HOH 33 2033 2033 HOH HOH A . E 4 HOH 34 2034 2034 HOH HOH A . F 4 HOH 1 2001 2001 HOH HOH F . F 4 HOH 2 2002 2002 HOH HOH F . F 4 HOH 3 2003 2003 HOH HOH F . F 4 HOH 4 2004 2004 HOH HOH F . F 4 HOH 5 2005 2005 HOH HOH F . F 4 HOH 6 2006 2006 HOH HOH F . F 4 HOH 7 2007 2007 HOH HOH F . F 4 HOH 8 2008 2008 HOH HOH F . F 4 HOH 9 2009 2009 HOH HOH F . F 4 HOH 10 2010 2010 HOH HOH F . F 4 HOH 11 2011 2011 HOH HOH F . F 4 HOH 12 2012 2012 HOH HOH F . F 4 HOH 13 2013 2013 HOH HOH F . F 4 HOH 14 2014 2014 HOH HOH F . F 4 HOH 15 2015 2015 HOH HOH F . F 4 HOH 16 2016 2016 HOH HOH F . F 4 HOH 17 2017 2017 HOH HOH F . F 4 HOH 18 2018 2018 HOH HOH F . F 4 HOH 19 2019 2019 HOH HOH F . F 4 HOH 20 2020 2020 HOH HOH F . F 4 HOH 21 2021 2021 HOH HOH F . F 4 HOH 22 2022 2022 HOH HOH F . F 4 HOH 23 2023 2023 HOH HOH F . F 4 HOH 24 2024 2024 HOH HOH F . F 4 HOH 25 2025 2025 HOH HOH F . F 4 HOH 26 2026 2026 HOH HOH F . F 4 HOH 27 2027 2027 HOH HOH F . G 4 HOH 1 2001 2001 HOH HOH W . G 4 HOH 2 2002 2002 HOH HOH W . G 4 HOH 3 2003 2003 HOH HOH W . G 4 HOH 4 2004 2004 HOH HOH W . G 4 HOH 5 2005 2005 HOH HOH W . G 4 HOH 6 2006 2006 HOH HOH W . G 4 HOH 7 2007 2007 HOH HOH W . G 4 HOH 8 2008 2008 HOH HOH W . G 4 HOH 9 2009 2009 HOH HOH W . G 4 HOH 10 2010 2010 HOH HOH W . G 4 HOH 11 2011 2011 HOH HOH W . G 4 HOH 12 2012 2012 HOH HOH W . G 4 HOH 13 2013 2013 HOH HOH W . G 4 HOH 14 2014 2014 HOH HOH W . G 4 HOH 15 2015 2015 HOH HOH W . G 4 HOH 16 2016 2016 HOH HOH W . G 4 HOH 17 2017 2017 HOH HOH W . G 4 HOH 18 2018 2018 HOH HOH W . G 4 HOH 19 2019 2019 HOH HOH W . G 4 HOH 20 2020 2020 HOH HOH W . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 B 5CM 6 F 5CM 6 ? DC ? 2 C 5CM 6 W 5CM 6 ? DC ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 44 ? A CYS 66 ? 1_555 ZN ? D ZN . ? A ZN 200 ? 1_555 ND1 ? A HIS 49 ? A HIS 71 ? 1_555 113.7 ? 2 SG ? A CYS 44 ? A CYS 66 ? 1_555 ZN ? D ZN . ? A ZN 200 ? 1_555 SG ? A CYS 51 ? A CYS 73 ? 1_555 99.1 ? 3 ND1 ? A HIS 49 ? A HIS 71 ? 1_555 ZN ? D ZN . ? A ZN 200 ? 1_555 SG ? A CYS 51 ? A CYS 73 ? 1_555 124.2 ? 4 SG ? A CYS 44 ? A CYS 66 ? 1_555 ZN ? D ZN . ? A ZN 200 ? 1_555 SG ? A CYS 95 ? A CYS 117 ? 1_555 104.2 ? 5 ND1 ? A HIS 49 ? A HIS 71 ? 1_555 ZN ? D ZN . ? A ZN 200 ? 1_555 SG ? A CYS 95 ? A CYS 117 ? 1_555 100.1 ? 6 SG ? A CYS 51 ? A CYS 73 ? 1_555 ZN ? D ZN . ? A ZN 200 ? 1_555 SG ? A CYS 95 ? A CYS 117 ? 1_555 114.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-03-13 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-12-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' Other 7 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_database_status 5 4 'Structure model' pdbx_initial_refinement_model 6 4 'Structure model' pdbx_struct_conn_angle 7 4 'Structure model' struct_conn 8 4 'Structure model' struct_conn_type 9 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.status_code_sf' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.value' 15 4 'Structure model' '_struct_conn.conn_type_id' 16 4 'Structure model' '_struct_conn.id' 17 4 'Structure model' '_struct_conn.pdbx_dist_value' 18 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 19 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 20 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 21 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 23 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 24 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 26 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 27 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 28 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 29 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 30 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 31 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 32 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 33 4 'Structure model' '_struct_conn_type.id' 34 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 35 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 36 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.0 ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 AMoRE phasing . ? 4 # _pdbx_entry_details.entry_id 1ODG _pdbx_entry_details.compound_details ;FUNCTIONS IN THE DEAMINATION OF 5-METHYLCYTOSINE IN DNA CAUSING MISMATCHES IN T/G WHICH CAN LEAD TO C-TO-T TRANSITION MUTATIONS IF UNREPAIRED. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 2014 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 F _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 2017 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.13 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P F DT 1 ? ? OP3 F DT 1 ? ? 1.522 1.607 -0.085 0.012 N 2 1 P W DT 1 ? ? OP3 W DT 1 ? ? 1.516 1.607 -0.091 0.012 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ILE A 24 ? ? -152.07 -22.59 2 1 ARG A 27 ? ? -31.57 -39.33 3 1 LEU A 37 ? ? -4.33 117.32 4 1 GLN A 42 ? ? 20.72 85.71 5 1 PRO A 47 ? ? -49.51 155.89 6 1 ARG A 49 ? ? 26.45 78.26 7 1 PRO A 50 ? ? -47.20 169.74 8 1 TYR A 57 ? ? -155.85 0.13 9 1 THR A 63 ? ? -117.93 75.98 10 1 HIS A 70 ? ? 39.24 66.50 11 1 CYS A 117 ? ? -46.86 -18.66 12 1 LEU A 119 ? ? -148.53 -0.61 13 1 ARG A 122 ? ? -76.05 47.95 14 1 GLU A 123 ? ? -173.87 -3.81 15 1 ASP A 127 ? ? -44.81 -15.26 16 1 ALA A 129 ? ? -34.05 -35.64 17 1 LEU A 130 ? ? -63.90 -70.74 18 1 TRP A 137 ? ? -92.86 -99.98 19 1 ILE A 138 ? ? -7.46 -63.26 20 1 GLU A 141 ? ? 47.60 174.26 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG F 8 ? ? 0.065 'SIDE CHAIN' 2 1 DG F 9 ? ? 0.054 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 77 ? CG ? A LYS 55 CG 2 1 Y 1 A LYS 77 ? CD ? A LYS 55 CD 3 1 Y 1 A LYS 77 ? CE ? A LYS 55 CE 4 1 Y 1 A LYS 77 ? NZ ? A LYS 55 NZ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5CM N1 N N N 1 5CM C2 C N N 2 5CM N3 N N N 3 5CM C4 C N N 4 5CM C5 C N N 5 5CM C5A C N N 6 5CM C6 C N N 7 5CM O2 O N N 8 5CM N4 N N N 9 5CM "C1'" C N R 10 5CM "C2'" C N N 11 5CM "C3'" C N S 12 5CM "C4'" C N R 13 5CM "O4'" O N N 14 5CM "O3'" O N N 15 5CM "C5'" C N N 16 5CM "O5'" O N N 17 5CM P P N N 18 5CM OP1 O N N 19 5CM OP2 O N N 20 5CM OP3 O N N 21 5CM H5A1 H N N 22 5CM H5A2 H N N 23 5CM H5A3 H N N 24 5CM H6 H N N 25 5CM HN41 H N N 26 5CM HN42 H N N 27 5CM "H1'" H N N 28 5CM "H2'" H N N 29 5CM "H2''" H N N 30 5CM "H3'" H N N 31 5CM "H4'" H N N 32 5CM "HO3'" H N N 33 5CM "H5'" H N N 34 5CM "H5''" H N N 35 5CM HOP2 H N N 36 5CM HOP3 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 CYS N N N N 111 CYS CA C N R 112 CYS C C N N 113 CYS O O N N 114 CYS CB C N N 115 CYS SG S N N 116 CYS OXT O N N 117 CYS H H N N 118 CYS H2 H N N 119 CYS HA H N N 120 CYS HB2 H N N 121 CYS HB3 H N N 122 CYS HG H N N 123 CYS HXT H N N 124 DA OP3 O N N 125 DA P P N N 126 DA OP1 O N N 127 DA OP2 O N N 128 DA "O5'" O N N 129 DA "C5'" C N N 130 DA "C4'" C N R 131 DA "O4'" O N N 132 DA "C3'" C N S 133 DA "O3'" O N N 134 DA "C2'" C N N 135 DA "C1'" C N R 136 DA N9 N Y N 137 DA C8 C Y N 138 DA N7 N Y N 139 DA C5 C Y N 140 DA C6 C Y N 141 DA N6 N N N 142 DA N1 N Y N 143 DA C2 C Y N 144 DA N3 N Y N 145 DA C4 C Y N 146 DA HOP3 H N N 147 DA HOP2 H N N 148 DA "H5'" H N N 149 DA "H5''" H N N 150 DA "H4'" H N N 151 DA "H3'" H N N 152 DA "HO3'" H N N 153 DA "H2'" H N N 154 DA "H2''" H N N 155 DA "H1'" H N N 156 DA H8 H N N 157 DA H61 H N N 158 DA H62 H N N 159 DA H2 H N N 160 DC OP3 O N N 161 DC P P N N 162 DC OP1 O N N 163 DC OP2 O N N 164 DC "O5'" O N N 165 DC "C5'" C N N 166 DC "C4'" C N R 167 DC "O4'" O N N 168 DC "C3'" C N S 169 DC "O3'" O N N 170 DC "C2'" C N N 171 DC "C1'" C N R 172 DC N1 N N N 173 DC C2 C N N 174 DC O2 O N N 175 DC N3 N N N 176 DC C4 C N N 177 DC N4 N N N 178 DC C5 C N N 179 DC C6 C N N 180 DC HOP3 H N N 181 DC HOP2 H N N 182 DC "H5'" H N N 183 DC "H5''" H N N 184 DC "H4'" H N N 185 DC "H3'" H N N 186 DC "HO3'" H N N 187 DC "H2'" H N N 188 DC "H2''" H N N 189 DC "H1'" H N N 190 DC H41 H N N 191 DC H42 H N N 192 DC H5 H N N 193 DC H6 H N N 194 DG OP3 O N N 195 DG P P N N 196 DG OP1 O N N 197 DG OP2 O N N 198 DG "O5'" O N N 199 DG "C5'" C N N 200 DG "C4'" C N R 201 DG "O4'" O N N 202 DG "C3'" C N S 203 DG "O3'" O N N 204 DG "C2'" C N N 205 DG "C1'" C N R 206 DG N9 N Y N 207 DG C8 C Y N 208 DG N7 N Y N 209 DG C5 C Y N 210 DG C6 C N N 211 DG O6 O N N 212 DG N1 N N N 213 DG C2 C N N 214 DG N2 N N N 215 DG N3 N N N 216 DG C4 C Y N 217 DG HOP3 H N N 218 DG HOP2 H N N 219 DG "H5'" H N N 220 DG "H5''" H N N 221 DG "H4'" H N N 222 DG "H3'" H N N 223 DG "HO3'" H N N 224 DG "H2'" H N N 225 DG "H2''" H N N 226 DG "H1'" H N N 227 DG H8 H N N 228 DG H1 H N N 229 DG H21 H N N 230 DG H22 H N N 231 DT OP3 O N N 232 DT P P N N 233 DT OP1 O N N 234 DT OP2 O N N 235 DT "O5'" O N N 236 DT "C5'" C N N 237 DT "C4'" C N R 238 DT "O4'" O N N 239 DT "C3'" C N S 240 DT "O3'" O N N 241 DT "C2'" C N N 242 DT "C1'" C N R 243 DT N1 N N N 244 DT C2 C N N 245 DT O2 O N N 246 DT N3 N N N 247 DT C4 C N N 248 DT O4 O N N 249 DT C5 C N N 250 DT C7 C N N 251 DT C6 C N N 252 DT HOP3 H N N 253 DT HOP2 H N N 254 DT "H5'" H N N 255 DT "H5''" H N N 256 DT "H4'" H N N 257 DT "H3'" H N N 258 DT "HO3'" H N N 259 DT "H2'" H N N 260 DT "H2''" H N N 261 DT "H1'" H N N 262 DT H3 H N N 263 DT H71 H N N 264 DT H72 H N N 265 DT H73 H N N 266 DT H6 H N N 267 GLN N N N N 268 GLN CA C N S 269 GLN C C N N 270 GLN O O N N 271 GLN CB C N N 272 GLN CG C N N 273 GLN CD C N N 274 GLN OE1 O N N 275 GLN NE2 N N N 276 GLN OXT O N N 277 GLN H H N N 278 GLN H2 H N N 279 GLN HA H N N 280 GLN HB2 H N N 281 GLN HB3 H N N 282 GLN HG2 H N N 283 GLN HG3 H N N 284 GLN HE21 H N N 285 GLN HE22 H N N 286 GLN HXT H N N 287 GLU N N N N 288 GLU CA C N S 289 GLU C C N N 290 GLU O O N N 291 GLU CB C N N 292 GLU CG C N N 293 GLU CD C N N 294 GLU OE1 O N N 295 GLU OE2 O N N 296 GLU OXT O N N 297 GLU H H N N 298 GLU H2 H N N 299 GLU HA H N N 300 GLU HB2 H N N 301 GLU HB3 H N N 302 GLU HG2 H N N 303 GLU HG3 H N N 304 GLU HE2 H N N 305 GLU HXT H N N 306 GLY N N N N 307 GLY CA C N N 308 GLY C C N N 309 GLY O O N N 310 GLY OXT O N N 311 GLY H H N N 312 GLY H2 H N N 313 GLY HA2 H N N 314 GLY HA3 H N N 315 GLY HXT H N N 316 HIS N N N N 317 HIS CA C N S 318 HIS C C N N 319 HIS O O N N 320 HIS CB C N N 321 HIS CG C Y N 322 HIS ND1 N Y N 323 HIS CD2 C Y N 324 HIS CE1 C Y N 325 HIS NE2 N Y N 326 HIS OXT O N N 327 HIS H H N N 328 HIS H2 H N N 329 HIS HA H N N 330 HIS HB2 H N N 331 HIS HB3 H N N 332 HIS HD1 H N N 333 HIS HD2 H N N 334 HIS HE1 H N N 335 HIS HE2 H N N 336 HIS HXT H N N 337 HOH O O N N 338 HOH H1 H N N 339 HOH H2 H N N 340 ILE N N N N 341 ILE CA C N S 342 ILE C C N N 343 ILE O O N N 344 ILE CB C N S 345 ILE CG1 C N N 346 ILE CG2 C N N 347 ILE CD1 C N N 348 ILE OXT O N N 349 ILE H H N N 350 ILE H2 H N N 351 ILE HA H N N 352 ILE HB H N N 353 ILE HG12 H N N 354 ILE HG13 H N N 355 ILE HG21 H N N 356 ILE HG22 H N N 357 ILE HG23 H N N 358 ILE HD11 H N N 359 ILE HD12 H N N 360 ILE HD13 H N N 361 ILE HXT H N N 362 LEU N N N N 363 LEU CA C N S 364 LEU C C N N 365 LEU O O N N 366 LEU CB C N N 367 LEU CG C N N 368 LEU CD1 C N N 369 LEU CD2 C N N 370 LEU OXT O N N 371 LEU H H N N 372 LEU H2 H N N 373 LEU HA H N N 374 LEU HB2 H N N 375 LEU HB3 H N N 376 LEU HG H N N 377 LEU HD11 H N N 378 LEU HD12 H N N 379 LEU HD13 H N N 380 LEU HD21 H N N 381 LEU HD22 H N N 382 LEU HD23 H N N 383 LEU HXT H N N 384 LYS N N N N 385 LYS CA C N S 386 LYS C C N N 387 LYS O O N N 388 LYS CB C N N 389 LYS CG C N N 390 LYS CD C N N 391 LYS CE C N N 392 LYS NZ N N N 393 LYS OXT O N N 394 LYS H H N N 395 LYS H2 H N N 396 LYS HA H N N 397 LYS HB2 H N N 398 LYS HB3 H N N 399 LYS HG2 H N N 400 LYS HG3 H N N 401 LYS HD2 H N N 402 LYS HD3 H N N 403 LYS HE2 H N N 404 LYS HE3 H N N 405 LYS HZ1 H N N 406 LYS HZ2 H N N 407 LYS HZ3 H N N 408 LYS HXT H N N 409 PHE N N N N 410 PHE CA C N S 411 PHE C C N N 412 PHE O O N N 413 PHE CB C N N 414 PHE CG C Y N 415 PHE CD1 C Y N 416 PHE CD2 C Y N 417 PHE CE1 C Y N 418 PHE CE2 C Y N 419 PHE CZ C Y N 420 PHE OXT O N N 421 PHE H H N N 422 PHE H2 H N N 423 PHE HA H N N 424 PHE HB2 H N N 425 PHE HB3 H N N 426 PHE HD1 H N N 427 PHE HD2 H N N 428 PHE HE1 H N N 429 PHE HE2 H N N 430 PHE HZ H N N 431 PHE HXT H N N 432 PRO N N N N 433 PRO CA C N S 434 PRO C C N N 435 PRO O O N N 436 PRO CB C N N 437 PRO CG C N N 438 PRO CD C N N 439 PRO OXT O N N 440 PRO H H N N 441 PRO HA H N N 442 PRO HB2 H N N 443 PRO HB3 H N N 444 PRO HG2 H N N 445 PRO HG3 H N N 446 PRO HD2 H N N 447 PRO HD3 H N N 448 PRO HXT H N N 449 SER N N N N 450 SER CA C N S 451 SER C C N N 452 SER O O N N 453 SER CB C N N 454 SER OG O N N 455 SER OXT O N N 456 SER H H N N 457 SER H2 H N N 458 SER HA H N N 459 SER HB2 H N N 460 SER HB3 H N N 461 SER HG H N N 462 SER HXT H N N 463 THR N N N N 464 THR CA C N S 465 THR C C N N 466 THR O O N N 467 THR CB C N R 468 THR OG1 O N N 469 THR CG2 C N N 470 THR OXT O N N 471 THR H H N N 472 THR H2 H N N 473 THR HA H N N 474 THR HB H N N 475 THR HG1 H N N 476 THR HG21 H N N 477 THR HG22 H N N 478 THR HG23 H N N 479 THR HXT H N N 480 TRP N N N N 481 TRP CA C N S 482 TRP C C N N 483 TRP O O N N 484 TRP CB C N N 485 TRP CG C Y N 486 TRP CD1 C Y N 487 TRP CD2 C Y N 488 TRP NE1 N Y N 489 TRP CE2 C Y N 490 TRP CE3 C Y N 491 TRP CZ2 C Y N 492 TRP CZ3 C Y N 493 TRP CH2 C Y N 494 TRP OXT O N N 495 TRP H H N N 496 TRP H2 H N N 497 TRP HA H N N 498 TRP HB2 H N N 499 TRP HB3 H N N 500 TRP HD1 H N N 501 TRP HE1 H N N 502 TRP HE3 H N N 503 TRP HZ2 H N N 504 TRP HZ3 H N N 505 TRP HH2 H N N 506 TRP HXT H N N 507 TYR N N N N 508 TYR CA C N S 509 TYR C C N N 510 TYR O O N N 511 TYR CB C N N 512 TYR CG C Y N 513 TYR CD1 C Y N 514 TYR CD2 C Y N 515 TYR CE1 C Y N 516 TYR CE2 C Y N 517 TYR CZ C Y N 518 TYR OH O N N 519 TYR OXT O N N 520 TYR H H N N 521 TYR H2 H N N 522 TYR HA H N N 523 TYR HB2 H N N 524 TYR HB3 H N N 525 TYR HD1 H N N 526 TYR HD2 H N N 527 TYR HE1 H N N 528 TYR HE2 H N N 529 TYR HH H N N 530 TYR HXT H N N 531 VAL N N N N 532 VAL CA C N S 533 VAL C C N N 534 VAL O O N N 535 VAL CB C N N 536 VAL CG1 C N N 537 VAL CG2 C N N 538 VAL OXT O N N 539 VAL H H N N 540 VAL H2 H N N 541 VAL HA H N N 542 VAL HB H N N 543 VAL HG11 H N N 544 VAL HG12 H N N 545 VAL HG13 H N N 546 VAL HG21 H N N 547 VAL HG22 H N N 548 VAL HG23 H N N 549 VAL HXT H N N 550 ZN ZN ZN N N 551 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5CM N1 C2 sing N N 1 5CM N1 C6 sing N N 2 5CM N1 "C1'" sing N N 3 5CM C2 N3 sing N N 4 5CM C2 O2 doub N N 5 5CM N3 C4 doub N N 6 5CM C4 C5 sing N N 7 5CM C4 N4 sing N N 8 5CM C5 C5A sing N N 9 5CM C5 C6 doub N N 10 5CM C5A H5A1 sing N N 11 5CM C5A H5A2 sing N N 12 5CM C5A H5A3 sing N N 13 5CM C6 H6 sing N N 14 5CM N4 HN41 sing N N 15 5CM N4 HN42 sing N N 16 5CM "C1'" "C2'" sing N N 17 5CM "C1'" "O4'" sing N N 18 5CM "C1'" "H1'" sing N N 19 5CM "C2'" "C3'" sing N N 20 5CM "C2'" "H2'" sing N N 21 5CM "C2'" "H2''" sing N N 22 5CM "C3'" "C4'" sing N N 23 5CM "C3'" "O3'" sing N N 24 5CM "C3'" "H3'" sing N N 25 5CM "C4'" "O4'" sing N N 26 5CM "C4'" "C5'" sing N N 27 5CM "C4'" "H4'" sing N N 28 5CM "O3'" "HO3'" sing N N 29 5CM "C5'" "O5'" sing N N 30 5CM "C5'" "H5'" sing N N 31 5CM "C5'" "H5''" sing N N 32 5CM "O5'" P sing N N 33 5CM P OP1 doub N N 34 5CM P OP2 sing N N 35 5CM P OP3 sing N N 36 5CM OP2 HOP2 sing N N 37 5CM OP3 HOP3 sing N N 38 ALA N CA sing N N 39 ALA N H sing N N 40 ALA N H2 sing N N 41 ALA CA C sing N N 42 ALA CA CB sing N N 43 ALA CA HA sing N N 44 ALA C O doub N N 45 ALA C OXT sing N N 46 ALA CB HB1 sing N N 47 ALA CB HB2 sing N N 48 ALA CB HB3 sing N N 49 ALA OXT HXT sing N N 50 ARG N CA sing N N 51 ARG N H sing N N 52 ARG N H2 sing N N 53 ARG CA C sing N N 54 ARG CA CB sing N N 55 ARG CA HA sing N N 56 ARG C O doub N N 57 ARG C OXT sing N N 58 ARG CB CG sing N N 59 ARG CB HB2 sing N N 60 ARG CB HB3 sing N N 61 ARG CG CD sing N N 62 ARG CG HG2 sing N N 63 ARG CG HG3 sing N N 64 ARG CD NE sing N N 65 ARG CD HD2 sing N N 66 ARG CD HD3 sing N N 67 ARG NE CZ sing N N 68 ARG NE HE sing N N 69 ARG CZ NH1 sing N N 70 ARG CZ NH2 doub N N 71 ARG NH1 HH11 sing N N 72 ARG NH1 HH12 sing N N 73 ARG NH2 HH21 sing N N 74 ARG NH2 HH22 sing N N 75 ARG OXT HXT sing N N 76 ASN N CA sing N N 77 ASN N H sing N N 78 ASN N H2 sing N N 79 ASN CA C sing N N 80 ASN CA CB sing N N 81 ASN CA HA sing N N 82 ASN C O doub N N 83 ASN C OXT sing N N 84 ASN CB CG sing N N 85 ASN CB HB2 sing N N 86 ASN CB HB3 sing N N 87 ASN CG OD1 doub N N 88 ASN CG ND2 sing N N 89 ASN ND2 HD21 sing N N 90 ASN ND2 HD22 sing N N 91 ASN OXT HXT sing N N 92 ASP N CA sing N N 93 ASP N H sing N N 94 ASP N H2 sing N N 95 ASP CA C sing N N 96 ASP CA CB sing N N 97 ASP CA HA sing N N 98 ASP C O doub N N 99 ASP C OXT sing N N 100 ASP CB CG sing N N 101 ASP CB HB2 sing N N 102 ASP CB HB3 sing N N 103 ASP CG OD1 doub N N 104 ASP CG OD2 sing N N 105 ASP OD2 HD2 sing N N 106 ASP OXT HXT sing N N 107 CYS N CA sing N N 108 CYS N H sing N N 109 CYS N H2 sing N N 110 CYS CA C sing N N 111 CYS CA CB sing N N 112 CYS CA HA sing N N 113 CYS C O doub N N 114 CYS C OXT sing N N 115 CYS CB SG sing N N 116 CYS CB HB2 sing N N 117 CYS CB HB3 sing N N 118 CYS SG HG sing N N 119 CYS OXT HXT sing N N 120 DA OP3 P sing N N 121 DA OP3 HOP3 sing N N 122 DA P OP1 doub N N 123 DA P OP2 sing N N 124 DA P "O5'" sing N N 125 DA OP2 HOP2 sing N N 126 DA "O5'" "C5'" sing N N 127 DA "C5'" "C4'" sing N N 128 DA "C5'" "H5'" sing N N 129 DA "C5'" "H5''" sing N N 130 DA "C4'" "O4'" sing N N 131 DA "C4'" "C3'" sing N N 132 DA "C4'" "H4'" sing N N 133 DA "O4'" "C1'" sing N N 134 DA "C3'" "O3'" sing N N 135 DA "C3'" "C2'" sing N N 136 DA "C3'" "H3'" sing N N 137 DA "O3'" "HO3'" sing N N 138 DA "C2'" "C1'" sing N N 139 DA "C2'" "H2'" sing N N 140 DA "C2'" "H2''" sing N N 141 DA "C1'" N9 sing N N 142 DA "C1'" "H1'" sing N N 143 DA N9 C8 sing Y N 144 DA N9 C4 sing Y N 145 DA C8 N7 doub Y N 146 DA C8 H8 sing N N 147 DA N7 C5 sing Y N 148 DA C5 C6 sing Y N 149 DA C5 C4 doub Y N 150 DA C6 N6 sing N N 151 DA C6 N1 doub Y N 152 DA N6 H61 sing N N 153 DA N6 H62 sing N N 154 DA N1 C2 sing Y N 155 DA C2 N3 doub Y N 156 DA C2 H2 sing N N 157 DA N3 C4 sing Y N 158 DC OP3 P sing N N 159 DC OP3 HOP3 sing N N 160 DC P OP1 doub N N 161 DC P OP2 sing N N 162 DC P "O5'" sing N N 163 DC OP2 HOP2 sing N N 164 DC "O5'" "C5'" sing N N 165 DC "C5'" "C4'" sing N N 166 DC "C5'" "H5'" sing N N 167 DC "C5'" "H5''" sing N N 168 DC "C4'" "O4'" sing N N 169 DC "C4'" "C3'" sing N N 170 DC "C4'" "H4'" sing N N 171 DC "O4'" "C1'" sing N N 172 DC "C3'" "O3'" sing N N 173 DC "C3'" "C2'" sing N N 174 DC "C3'" "H3'" sing N N 175 DC "O3'" "HO3'" sing N N 176 DC "C2'" "C1'" sing N N 177 DC "C2'" "H2'" sing N N 178 DC "C2'" "H2''" sing N N 179 DC "C1'" N1 sing N N 180 DC "C1'" "H1'" sing N N 181 DC N1 C2 sing N N 182 DC N1 C6 sing N N 183 DC C2 O2 doub N N 184 DC C2 N3 sing N N 185 DC N3 C4 doub N N 186 DC C4 N4 sing N N 187 DC C4 C5 sing N N 188 DC N4 H41 sing N N 189 DC N4 H42 sing N N 190 DC C5 C6 doub N N 191 DC C5 H5 sing N N 192 DC C6 H6 sing N N 193 DG OP3 P sing N N 194 DG OP3 HOP3 sing N N 195 DG P OP1 doub N N 196 DG P OP2 sing N N 197 DG P "O5'" sing N N 198 DG OP2 HOP2 sing N N 199 DG "O5'" "C5'" sing N N 200 DG "C5'" "C4'" sing N N 201 DG "C5'" "H5'" sing N N 202 DG "C5'" "H5''" sing N N 203 DG "C4'" "O4'" sing N N 204 DG "C4'" "C3'" sing N N 205 DG "C4'" "H4'" sing N N 206 DG "O4'" "C1'" sing N N 207 DG "C3'" "O3'" sing N N 208 DG "C3'" "C2'" sing N N 209 DG "C3'" "H3'" sing N N 210 DG "O3'" "HO3'" sing N N 211 DG "C2'" "C1'" sing N N 212 DG "C2'" "H2'" sing N N 213 DG "C2'" "H2''" sing N N 214 DG "C1'" N9 sing N N 215 DG "C1'" "H1'" sing N N 216 DG N9 C8 sing Y N 217 DG N9 C4 sing Y N 218 DG C8 N7 doub Y N 219 DG C8 H8 sing N N 220 DG N7 C5 sing Y N 221 DG C5 C6 sing N N 222 DG C5 C4 doub Y N 223 DG C6 O6 doub N N 224 DG C6 N1 sing N N 225 DG N1 C2 sing N N 226 DG N1 H1 sing N N 227 DG C2 N2 sing N N 228 DG C2 N3 doub N N 229 DG N2 H21 sing N N 230 DG N2 H22 sing N N 231 DG N3 C4 sing N N 232 DT OP3 P sing N N 233 DT OP3 HOP3 sing N N 234 DT P OP1 doub N N 235 DT P OP2 sing N N 236 DT P "O5'" sing N N 237 DT OP2 HOP2 sing N N 238 DT "O5'" "C5'" sing N N 239 DT "C5'" "C4'" sing N N 240 DT "C5'" "H5'" sing N N 241 DT "C5'" "H5''" sing N N 242 DT "C4'" "O4'" sing N N 243 DT "C4'" "C3'" sing N N 244 DT "C4'" "H4'" sing N N 245 DT "O4'" "C1'" sing N N 246 DT "C3'" "O3'" sing N N 247 DT "C3'" "C2'" sing N N 248 DT "C3'" "H3'" sing N N 249 DT "O3'" "HO3'" sing N N 250 DT "C2'" "C1'" sing N N 251 DT "C2'" "H2'" sing N N 252 DT "C2'" "H2''" sing N N 253 DT "C1'" N1 sing N N 254 DT "C1'" "H1'" sing N N 255 DT N1 C2 sing N N 256 DT N1 C6 sing N N 257 DT C2 O2 doub N N 258 DT C2 N3 sing N N 259 DT N3 C4 sing N N 260 DT N3 H3 sing N N 261 DT C4 O4 doub N N 262 DT C4 C5 sing N N 263 DT C5 C7 sing N N 264 DT C5 C6 doub N N 265 DT C7 H71 sing N N 266 DT C7 H72 sing N N 267 DT C7 H73 sing N N 268 DT C6 H6 sing N N 269 GLN N CA sing N N 270 GLN N H sing N N 271 GLN N H2 sing N N 272 GLN CA C sing N N 273 GLN CA CB sing N N 274 GLN CA HA sing N N 275 GLN C O doub N N 276 GLN C OXT sing N N 277 GLN CB CG sing N N 278 GLN CB HB2 sing N N 279 GLN CB HB3 sing N N 280 GLN CG CD sing N N 281 GLN CG HG2 sing N N 282 GLN CG HG3 sing N N 283 GLN CD OE1 doub N N 284 GLN CD NE2 sing N N 285 GLN NE2 HE21 sing N N 286 GLN NE2 HE22 sing N N 287 GLN OXT HXT sing N N 288 GLU N CA sing N N 289 GLU N H sing N N 290 GLU N H2 sing N N 291 GLU CA C sing N N 292 GLU CA CB sing N N 293 GLU CA HA sing N N 294 GLU C O doub N N 295 GLU C OXT sing N N 296 GLU CB CG sing N N 297 GLU CB HB2 sing N N 298 GLU CB HB3 sing N N 299 GLU CG CD sing N N 300 GLU CG HG2 sing N N 301 GLU CG HG3 sing N N 302 GLU CD OE1 doub N N 303 GLU CD OE2 sing N N 304 GLU OE2 HE2 sing N N 305 GLU OXT HXT sing N N 306 GLY N CA sing N N 307 GLY N H sing N N 308 GLY N H2 sing N N 309 GLY CA C sing N N 310 GLY CA HA2 sing N N 311 GLY CA HA3 sing N N 312 GLY C O doub N N 313 GLY C OXT sing N N 314 GLY OXT HXT sing N N 315 HIS N CA sing N N 316 HIS N H sing N N 317 HIS N H2 sing N N 318 HIS CA C sing N N 319 HIS CA CB sing N N 320 HIS CA HA sing N N 321 HIS C O doub N N 322 HIS C OXT sing N N 323 HIS CB CG sing N N 324 HIS CB HB2 sing N N 325 HIS CB HB3 sing N N 326 HIS CG ND1 sing Y N 327 HIS CG CD2 doub Y N 328 HIS ND1 CE1 doub Y N 329 HIS ND1 HD1 sing N N 330 HIS CD2 NE2 sing Y N 331 HIS CD2 HD2 sing N N 332 HIS CE1 NE2 sing Y N 333 HIS CE1 HE1 sing N N 334 HIS NE2 HE2 sing N N 335 HIS OXT HXT sing N N 336 HOH O H1 sing N N 337 HOH O H2 sing N N 338 ILE N CA sing N N 339 ILE N H sing N N 340 ILE N H2 sing N N 341 ILE CA C sing N N 342 ILE CA CB sing N N 343 ILE CA HA sing N N 344 ILE C O doub N N 345 ILE C OXT sing N N 346 ILE CB CG1 sing N N 347 ILE CB CG2 sing N N 348 ILE CB HB sing N N 349 ILE CG1 CD1 sing N N 350 ILE CG1 HG12 sing N N 351 ILE CG1 HG13 sing N N 352 ILE CG2 HG21 sing N N 353 ILE CG2 HG22 sing N N 354 ILE CG2 HG23 sing N N 355 ILE CD1 HD11 sing N N 356 ILE CD1 HD12 sing N N 357 ILE CD1 HD13 sing N N 358 ILE OXT HXT sing N N 359 LEU N CA sing N N 360 LEU N H sing N N 361 LEU N H2 sing N N 362 LEU CA C sing N N 363 LEU CA CB sing N N 364 LEU CA HA sing N N 365 LEU C O doub N N 366 LEU C OXT sing N N 367 LEU CB CG sing N N 368 LEU CB HB2 sing N N 369 LEU CB HB3 sing N N 370 LEU CG CD1 sing N N 371 LEU CG CD2 sing N N 372 LEU CG HG sing N N 373 LEU CD1 HD11 sing N N 374 LEU CD1 HD12 sing N N 375 LEU CD1 HD13 sing N N 376 LEU CD2 HD21 sing N N 377 LEU CD2 HD22 sing N N 378 LEU CD2 HD23 sing N N 379 LEU OXT HXT sing N N 380 LYS N CA sing N N 381 LYS N H sing N N 382 LYS N H2 sing N N 383 LYS CA C sing N N 384 LYS CA CB sing N N 385 LYS CA HA sing N N 386 LYS C O doub N N 387 LYS C OXT sing N N 388 LYS CB CG sing N N 389 LYS CB HB2 sing N N 390 LYS CB HB3 sing N N 391 LYS CG CD sing N N 392 LYS CG HG2 sing N N 393 LYS CG HG3 sing N N 394 LYS CD CE sing N N 395 LYS CD HD2 sing N N 396 LYS CD HD3 sing N N 397 LYS CE NZ sing N N 398 LYS CE HE2 sing N N 399 LYS CE HE3 sing N N 400 LYS NZ HZ1 sing N N 401 LYS NZ HZ2 sing N N 402 LYS NZ HZ3 sing N N 403 LYS OXT HXT sing N N 404 PHE N CA sing N N 405 PHE N H sing N N 406 PHE N H2 sing N N 407 PHE CA C sing N N 408 PHE CA CB sing N N 409 PHE CA HA sing N N 410 PHE C O doub N N 411 PHE C OXT sing N N 412 PHE CB CG sing N N 413 PHE CB HB2 sing N N 414 PHE CB HB3 sing N N 415 PHE CG CD1 doub Y N 416 PHE CG CD2 sing Y N 417 PHE CD1 CE1 sing Y N 418 PHE CD1 HD1 sing N N 419 PHE CD2 CE2 doub Y N 420 PHE CD2 HD2 sing N N 421 PHE CE1 CZ doub Y N 422 PHE CE1 HE1 sing N N 423 PHE CE2 CZ sing Y N 424 PHE CE2 HE2 sing N N 425 PHE CZ HZ sing N N 426 PHE OXT HXT sing N N 427 PRO N CA sing N N 428 PRO N CD sing N N 429 PRO N H sing N N 430 PRO CA C sing N N 431 PRO CA CB sing N N 432 PRO CA HA sing N N 433 PRO C O doub N N 434 PRO C OXT sing N N 435 PRO CB CG sing N N 436 PRO CB HB2 sing N N 437 PRO CB HB3 sing N N 438 PRO CG CD sing N N 439 PRO CG HG2 sing N N 440 PRO CG HG3 sing N N 441 PRO CD HD2 sing N N 442 PRO CD HD3 sing N N 443 PRO OXT HXT sing N N 444 SER N CA sing N N 445 SER N H sing N N 446 SER N H2 sing N N 447 SER CA C sing N N 448 SER CA CB sing N N 449 SER CA HA sing N N 450 SER C O doub N N 451 SER C OXT sing N N 452 SER CB OG sing N N 453 SER CB HB2 sing N N 454 SER CB HB3 sing N N 455 SER OG HG sing N N 456 SER OXT HXT sing N N 457 THR N CA sing N N 458 THR N H sing N N 459 THR N H2 sing N N 460 THR CA C sing N N 461 THR CA CB sing N N 462 THR CA HA sing N N 463 THR C O doub N N 464 THR C OXT sing N N 465 THR CB OG1 sing N N 466 THR CB CG2 sing N N 467 THR CB HB sing N N 468 THR OG1 HG1 sing N N 469 THR CG2 HG21 sing N N 470 THR CG2 HG22 sing N N 471 THR CG2 HG23 sing N N 472 THR OXT HXT sing N N 473 TRP N CA sing N N 474 TRP N H sing N N 475 TRP N H2 sing N N 476 TRP CA C sing N N 477 TRP CA CB sing N N 478 TRP CA HA sing N N 479 TRP C O doub N N 480 TRP C OXT sing N N 481 TRP CB CG sing N N 482 TRP CB HB2 sing N N 483 TRP CB HB3 sing N N 484 TRP CG CD1 doub Y N 485 TRP CG CD2 sing Y N 486 TRP CD1 NE1 sing Y N 487 TRP CD1 HD1 sing N N 488 TRP CD2 CE2 doub Y N 489 TRP CD2 CE3 sing Y N 490 TRP NE1 CE2 sing Y N 491 TRP NE1 HE1 sing N N 492 TRP CE2 CZ2 sing Y N 493 TRP CE3 CZ3 doub Y N 494 TRP CE3 HE3 sing N N 495 TRP CZ2 CH2 doub Y N 496 TRP CZ2 HZ2 sing N N 497 TRP CZ3 CH2 sing Y N 498 TRP CZ3 HZ3 sing N N 499 TRP CH2 HH2 sing N N 500 TRP OXT HXT sing N N 501 TYR N CA sing N N 502 TYR N H sing N N 503 TYR N H2 sing N N 504 TYR CA C sing N N 505 TYR CA CB sing N N 506 TYR CA HA sing N N 507 TYR C O doub N N 508 TYR C OXT sing N N 509 TYR CB CG sing N N 510 TYR CB HB2 sing N N 511 TYR CB HB3 sing N N 512 TYR CG CD1 doub Y N 513 TYR CG CD2 sing Y N 514 TYR CD1 CE1 sing Y N 515 TYR CD1 HD1 sing N N 516 TYR CD2 CE2 doub Y N 517 TYR CD2 HD2 sing N N 518 TYR CE1 CZ doub Y N 519 TYR CE1 HE1 sing N N 520 TYR CE2 CZ sing Y N 521 TYR CE2 HE2 sing N N 522 TYR CZ OH sing N N 523 TYR OH HH sing N N 524 TYR OXT HXT sing N N 525 VAL N CA sing N N 526 VAL N H sing N N 527 VAL N H2 sing N N 528 VAL CA C sing N N 529 VAL CA CB sing N N 530 VAL CA HA sing N N 531 VAL C O doub N N 532 VAL C OXT sing N N 533 VAL CB CG1 sing N N 534 VAL CB CG2 sing N N 535 VAL CB HB sing N N 536 VAL CG1 HG11 sing N N 537 VAL CG1 HG12 sing N N 538 VAL CG1 HG13 sing N N 539 VAL CG2 HG21 sing N N 540 VAL CG2 HG22 sing N N 541 VAL CG2 HG23 sing N N 542 VAL OXT HXT sing N N 543 # _ndb_struct_conf_na.entry_id 1ODG _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DT 1 1_555 C DG 8 1_555 1.554 -0.193 0.386 -7.450 -10.118 9.952 1 F_DT1:DG8_W F 1 ? W 8 ? 28 1 1 B DA 2 1_555 C DT 7 1_555 -0.104 -2.331 -0.292 6.422 0.246 80.840 2 F_DA2:DT7_W F 2 ? W 7 ? 23 3 1 B DG 3 1_555 C 5CM 6 1_555 0.188 -0.257 -0.313 -0.965 -3.328 -2.869 3 F_DG3:5CM6_W F 3 ? W 6 ? 19 1 1 B DG 4 1_555 C DC 5 1_555 -0.066 -0.222 -0.636 -11.245 0.221 -3.955 4 F_DG4:DC5_W F 4 ? W 5 ? 19 1 1 B DC 5 1_555 C DG 4 1_555 -0.041 -0.292 -0.188 -11.620 -3.061 -4.376 5 F_DC5:DG4_W F 5 ? W 4 ? 19 1 1 B 5CM 6 1_555 C DG 3 1_555 0.186 -0.261 0.250 -12.545 -3.145 0.756 6 F_5CM6:DG3_W F 6 ? W 3 ? 19 1 1 B DT 7 1_555 C DA 2 1_555 0.172 2.699 0.095 -1.498 -9.764 -73.645 7 F_DT7:DA2_W F 7 ? W 2 ? 23 3 1 B DG 8 1_555 C DT 1 1_555 -2.060 -0.598 0.344 0.444 -5.310 -3.554 8 F_DG8:DT1_W F 8 ? W 1 ? 28 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DT 1 1_555 C DG 8 1_555 B DA 2 1_555 C DT 7 1_555 -0.603 3.053 0.515 170.215 -23.105 -148.858 -1.515 -0.215 0.766 11.573 85.257 -177.794 1 FF_DT1DA2:DT7DG8_WW F 1 ? W 8 ? F 2 ? W 7 ? 1 B DA 2 1_555 C DT 7 1_555 B DG 3 1_555 C 5CM 6 1_555 0.842 3.711 -0.371 -138.241 108.251 -160.600 -1.829 0.455 -0.639 -54.145 -69.145 -179.256 2 FF_DA2DG3:5CM6DT7_WW F 2 ? W 7 ? F 3 ? W 6 ? 1 B DG 3 1_555 C 5CM 6 1_555 B DG 4 1_555 C DC 5 1_555 -0.636 -0.891 3.557 -1.874 14.125 32.314 -3.659 0.761 2.955 23.978 3.181 35.239 3 FF_DG3DG4:DC55CM6_WW F 3 ? W 6 ? F 4 ? W 5 ? 1 B DG 4 1_555 C DC 5 1_555 B DC 5 1_555 C DG 4 1_555 -0.116 -1.359 3.412 -1.796 6.857 31.039 -3.733 -0.117 3.051 12.608 3.302 31.818 4 FF_DG4DC5:DG4DC5_WW F 4 ? W 5 ? F 5 ? W 4 ? 1 B DC 5 1_555 C DG 4 1_555 B 5CM 6 1_555 C DG 3 1_555 0.802 -0.528 3.454 0.825 8.569 33.844 -2.233 -1.208 3.246 14.432 -1.390 34.891 5 FF_DC55CM6:DG3DG4_WW F 5 ? W 4 ? F 6 ? W 3 ? 1 B 5CM 6 1_555 C DG 3 1_555 B DT 7 1_555 C DA 2 1_555 2.348 -1.266 2.995 5.040 2.258 76.497 -1.082 -1.756 3.089 1.821 -4.065 76.666 6 FF_5CM6DT7:DA2DG3_WW F 6 ? W 3 ? F 7 ? W 2 ? 1 B DT 7 1_555 C DA 2 1_555 B DG 8 1_555 C DT 1 1_555 0.067 -0.073 7.355 -19.492 -46.408 -30.495 5.914 -2.383 3.934 56.024 -23.530 -58.333 7 FF_DT7DG8:DT1DA2_WW F 7 ? W 2 ? F 8 ? W 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'ZINC ION' ZN 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1CW0 _pdbx_initial_refinement_model.details 'PDB ENTRY 1CW0' #