data_1OO7 # _entry.id 1OO7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1OO7 pdb_00001oo7 10.2210/pdb1oo7/pdb RCSB RCSB018494 ? ? WWPDB D_1000018494 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-11-11 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2021-07-28 5 'Structure model' 2 1 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Non-polymer description' 7 4 'Structure model' 'Polymer sequence' 8 4 'Structure model' 'Structure summary' 9 5 'Structure model' 'Data collection' 10 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp 3 4 'Structure model' entity 4 4 'Structure model' entity_poly 5 4 'Structure model' pdbx_nmr_software 6 4 'Structure model' pdbx_struct_assembly 7 4 'Structure model' pdbx_struct_oper_list 8 4 'Structure model' struct_conn 9 5 'Structure model' chem_comp_atom 10 5 'Structure model' chem_comp_bond 11 5 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.Cartn_x' 2 4 'Structure model' '_atom_site.Cartn_y' 3 4 'Structure model' '_atom_site.Cartn_z' 4 4 'Structure model' '_atom_site.auth_atom_id' 5 4 'Structure model' '_atom_site.label_atom_id' 6 4 'Structure model' '_chem_comp.formula' 7 4 'Structure model' '_chem_comp.formula_weight' 8 4 'Structure model' '_chem_comp.mon_nstd_flag' 9 4 'Structure model' '_entity.formula_weight' 10 4 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can' 11 4 'Structure model' '_pdbx_nmr_software.name' 12 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 13 5 'Structure model' '_database_2.pdbx_DOI' 14 5 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1OO7 _pdbx_database_status.recvd_initial_deposition_date 2003-03-03 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1DRR 'DNA/RNA Hybrid Duplex Containing A Purine-Rich DNA Strand, NMR, 10 Structures' unspecified PDB 1RRD 'DNA/RNA Hybrid Duplex Containing A Purine-Rich RNA Strand, NMR, 10 Structures' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gyi, J.I.' 1 'Gao, D.' 2 'Conn, G.L.' 3 'Trent, J.O.' 4 'Brown, T.' 5 'Lane, A.N.' 6 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'The solution structure of a DNA*RNA duplex containing 5-propynyl U and C; comparison with 5-Me modifications' 'Nucleic Acids Res.' 31 2683 2693 2003 NARHAD UK 0305-1048 0389 ? 12736318 10.1093/nar/gkg356 1 ;Solution Structures of DNA.RNA Hybrids with Purine-Rich and Pyrimidine-Rich Strands: Comparison with the Homologous DNA and RNA Duplexes ; Biochemistry 37 73 80 1998 BICHAW US 0006-2960 0033 ? ? 10.1021/bi9719713 2 ;Comparison of the Thermodynamic Stabilities and Solution Conformations of DNA.RNA Hybrids Containing Purine-Rich and Pyrimidine-Rich Strands with DNA and RNA Duplexes ; Biochemistry 35 12538 12548 1996 BICHAW US 0006-2960 0033 ? ? 10.1021/bi960948z # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gyi, J.I.' 1 ? primary 'Gao, D.' 2 ? primary 'Conn, G.L.' 3 ? primary 'Trent, J.O.' 4 ? primary 'Brown, T.' 5 ? primary 'Lane, A.N.' 6 ? 1 'Gyi, J.I.' 7 ? 1 'Lane, A.N.' 8 ? 1 'Conn, G.L.' 9 ? 1 'Brown, T.' 10 ? 2 'Gyi, J.I.' 11 ? 2 'Conn, G.L.' 12 ? 2 'Lane, A.N.' 13 ? 2 'Brown, T.' 14 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(*GP*AP*AP*GP*AP*GP*AP*AP*GP*C)-3'" 3287.076 1 ? ? ? ? 2 polymer syn "5'-D(*GP*(5PC)P*(PDU)P*(PDU)P*(5PC)P*(PDU)P*(5PC)P*(PDU)P*(PDU)P*C)-3'" 3196.194 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GAAGAGAAGC GAAGAGAAGC A ? 2 polydeoxyribonucleotide no yes '(DG)(5PC)(PDU)(PDU)(5PC)(PDU)(5PC)(PDU)(PDU)(DC)' GCXXCXCXXC B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 A n 1 3 A n 1 4 G n 1 5 A n 1 6 G n 1 7 A n 1 8 A n 1 9 G n 1 10 C n 2 1 DG n 2 2 5PC n 2 3 PDU n 2 4 PDU n 2 5 5PC n 2 6 PDU n 2 7 5PC n 2 8 PDU n 2 9 PDU n 2 10 DC n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5PC 'DNA linking' n "5(1-PROPYNYL)-2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C12 H16 N3 O7 P' 345.245 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 PDU 'DNA linking' . "5(1-PROPYNYL)-2'-DEOXYURIDINE-5-MONOPHOSPHATE" ? 'C12 H15 N2 O8 P' 346.230 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 A 2 2 2 A A A . n A 1 3 A 3 3 3 A A A . n A 1 4 G 4 4 4 G G A . n A 1 5 A 5 5 5 A A A . n A 1 6 G 6 6 6 G G A . n A 1 7 A 7 7 7 A A A . n A 1 8 A 8 8 8 A A A . n A 1 9 G 9 9 9 G G A . n A 1 10 C 10 10 10 C C A . n B 2 1 DG 1 1 1 DG G B . n B 2 2 5PC 2 2 2 5PC 5PC B . n B 2 3 PDU 3 3 3 PDU PDU B . n B 2 4 PDU 4 4 4 PDU PDU B . n B 2 5 5PC 5 5 5 5PC 5PC B . n B 2 6 PDU 6 6 6 PDU PDU B . n B 2 7 5PC 7 7 7 5PC 5PC B . n B 2 8 PDU 8 8 8 PDU PDU B . n B 2 9 PDU 9 9 9 PDU PDU B . n B 2 10 DC 10 10 10 DC C B . n # _cell.entry_id 1OO7 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OO7 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 1OO7 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol ? _exptl_crystal.density_Matthews ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _database_PDB_matrix.entry_id 1OO7 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1OO7 _struct.title 'DNA.RNA HYBRID DUPLEX CONTAINING A 5-PROPYNE DNA STRAND AND PURINE-RICH RNA STRAND, NMR, 4 STRUCTURES' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details 'minimized average' # _struct_keywords.entry_id 1OO7 _struct_keywords.pdbx_keywords 'DNA-RNA HYBRID' _struct_keywords.text 'DNA.RNA HYBRID, PURINE/PYRIMIDINE-RICH STRANDS, ANTISENSE, DNA-RNA COMPLEX, DNA-RNA HYBRID' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 1 PDB 1OO7 1OO7 ? ? ? 2 2 PDB 1OO7 1OO7 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1OO7 A 1 ? 10 ? 1OO7 1 ? 10 ? 1 10 2 2 1OO7 B 1 ? 10 ? 1OO7 1 ? 10 ? 1 10 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DG 1 "O3'" ? ? ? 1_555 B 5PC 2 P ? ? B DG 1 B 5PC 2 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale2 covale both ? B 5PC 2 "O3'" ? ? ? 1_555 B PDU 3 P ? ? B 5PC 2 B PDU 3 1_555 ? ? ? ? ? ? ? 1.602 ? ? covale3 covale one ? B PDU 3 "O3'" ? ? ? 1_555 B PDU 4 P ? ? B PDU 3 B PDU 4 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale4 covale one ? B PDU 4 "O3'" ? ? ? 1_555 B 5PC 5 P ? ? B PDU 4 B 5PC 5 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale5 covale both ? B 5PC 5 "O3'" ? ? ? 1_555 B PDU 6 P ? ? B 5PC 5 B PDU 6 1_555 ? ? ? ? ? ? ? 1.602 ? ? covale6 covale one ? B PDU 6 "O3'" ? ? ? 1_555 B 5PC 7 P ? ? B PDU 6 B 5PC 7 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale7 covale both ? B 5PC 7 "O3'" ? ? ? 1_555 B PDU 8 P ? ? B 5PC 7 B PDU 8 1_555 ? ? ? ? ? ? ? 1.602 ? ? covale8 covale one ? B PDU 8 "O3'" ? ? ? 1_555 B PDU 9 P ? ? B PDU 8 B PDU 9 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale9 covale one ? B PDU 9 "O3'" ? ? ? 1_555 B DC 10 P ? ? B PDU 9 B DC 10 1_555 ? ? ? ? ? ? ? 1.611 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B DC 10 N3 ? ? A G 1 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B DC 10 O2 ? ? A G 1 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B DC 10 N4 ? ? A G 1 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 2 N1 ? ? ? 1_555 B PDU 9 N3 ? ? A A 2 B PDU 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 2 N6 ? ? ? 1_555 B PDU 9 O4 ? ? A A 2 B PDU 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A A 3 N1 ? ? ? 1_555 B PDU 8 N3 ? ? A A 3 B PDU 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N6 ? ? ? 1_555 B PDU 8 O4 ? ? A A 3 B PDU 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 4 N1 ? ? ? 1_555 B 5PC 7 N3 ? ? A G 4 B 5PC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N2 ? ? ? 1_555 B 5PC 7 O2 ? ? A G 4 B 5PC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 O6 ? ? ? 1_555 B 5PC 7 N4 ? ? A G 4 B 5PC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 5 N1 ? ? ? 1_555 B PDU 6 N3 ? ? A A 5 B PDU 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A 5 N6 ? ? ? 1_555 B PDU 6 O4 ? ? A A 5 B PDU 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 6 N1 ? ? ? 1_555 B 5PC 5 N3 ? ? A G 6 B 5PC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 6 N2 ? ? ? 1_555 B 5PC 5 O2 ? ? A G 6 B 5PC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 6 O6 ? ? ? 1_555 B 5PC 5 N4 ? ? A G 6 B 5PC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 7 N1 ? ? ? 1_555 B PDU 4 N3 ? ? A A 7 B PDU 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A A 7 N6 ? ? ? 1_555 B PDU 4 O4 ? ? A A 7 B PDU 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A A 8 N1 ? ? ? 1_555 B PDU 3 N3 ? ? A A 8 B PDU 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A A 8 N6 ? ? ? 1_555 B PDU 3 O4 ? ? A A 8 B PDU 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 9 N1 ? ? ? 1_555 B 5PC 2 N3 ? ? A G 9 B 5PC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 9 N2 ? ? ? 1_555 B 5PC 2 O2 ? ? A G 9 B 5PC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 9 O6 ? ? ? 1_555 B 5PC 2 N4 ? ? A G 9 B 5PC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 10 N3 ? ? ? 1_555 B DG 1 N1 ? ? A C 10 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 10 N4 ? ? ? 1_555 B DG 1 O6 ? ? A C 10 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 10 O2 ? ? ? 1_555 B DG 1 N2 ? ? A C 10 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N3 A G 1 ? ? C2 A G 1 ? ? N2 A G 1 ? ? 114.75 119.90 -5.15 0.70 N 2 1 C5 A A 2 ? ? C6 A A 2 ? ? N1 A A 2 ? ? 121.36 117.70 3.66 0.50 N 3 1 C5 A A 3 ? ? C6 A A 3 ? ? N1 A A 3 ? ? 121.45 117.70 3.75 0.50 N 4 1 "O4'" A G 4 ? ? "C1'" A G 4 ? ? N9 A G 4 ? ? 112.98 108.50 4.48 0.70 N 5 1 N3 A G 4 ? ? C2 A G 4 ? ? N2 A G 4 ? ? 115.45 119.90 -4.45 0.70 N 6 1 N1 A G 4 ? ? C6 A G 4 ? ? O6 A G 4 ? ? 116.18 119.90 -3.72 0.60 N 7 1 C5 A A 5 ? ? C6 A A 5 ? ? N1 A A 5 ? ? 121.26 117.70 3.56 0.50 N 8 1 N1 A A 5 ? ? C6 A A 5 ? ? N6 A A 5 ? ? 114.86 118.60 -3.74 0.60 N 9 1 "O4'" A G 6 ? ? "C1'" A G 6 ? ? N9 A G 6 ? ? 113.08 108.50 4.58 0.70 N 10 1 N3 A G 6 ? ? C2 A G 6 ? ? N2 A G 6 ? ? 115.27 119.90 -4.63 0.70 N 11 1 C5 A A 7 ? ? C6 A A 7 ? ? N1 A A 7 ? ? 121.47 117.70 3.77 0.50 N 12 1 C5 A A 8 ? ? C6 A A 8 ? ? N1 A A 8 ? ? 121.44 117.70 3.74 0.50 N 13 1 N1 A A 8 ? ? C6 A A 8 ? ? N6 A A 8 ? ? 114.91 118.60 -3.69 0.60 N 14 1 "O4'" A G 9 ? ? "C1'" A G 9 ? ? N9 A G 9 ? ? 114.17 108.50 5.67 0.70 N 15 1 "O4'" A C 10 ? ? "C1'" A C 10 ? ? N1 A C 10 ? ? 113.48 108.50 4.98 0.70 N 16 1 N3 A C 10 ? ? C2 A C 10 ? ? O2 A C 10 ? ? 117.61 121.90 -4.29 0.70 N 17 1 N3 B DG 1 ? ? C2 B DG 1 ? ? N2 B DG 1 ? ? 115.56 119.90 -4.34 0.70 N 18 2 N3 A G 1 ? ? C2 A G 1 ? ? N2 A G 1 ? ? 114.74 119.90 -5.16 0.70 N 19 2 C5 A A 2 ? ? C6 A A 2 ? ? N1 A A 2 ? ? 121.29 117.70 3.59 0.50 N 20 2 C5 A A 3 ? ? C6 A A 3 ? ? N1 A A 3 ? ? 121.41 117.70 3.71 0.50 N 21 2 "O4'" A G 4 ? ? "C1'" A G 4 ? ? N9 A G 4 ? ? 114.46 108.50 5.96 0.70 N 22 2 N3 A G 4 ? ? C2 A G 4 ? ? N2 A G 4 ? ? 115.45 119.90 -4.45 0.70 N 23 2 N1 A G 4 ? ? C6 A G 4 ? ? O6 A G 4 ? ? 116.28 119.90 -3.62 0.60 N 24 2 C5 A A 5 ? ? C6 A A 5 ? ? N1 A A 5 ? ? 121.16 117.70 3.46 0.50 N 25 2 N1 A A 5 ? ? C6 A A 5 ? ? N6 A A 5 ? ? 114.68 118.60 -3.92 0.60 N 26 2 "O4'" A G 6 ? ? "C1'" A G 6 ? ? N9 A G 6 ? ? 113.62 108.50 5.12 0.70 N 27 2 N3 A G 6 ? ? C2 A G 6 ? ? N2 A G 6 ? ? 114.88 119.90 -5.02 0.70 N 28 2 N1 A G 6 ? ? C6 A G 6 ? ? O6 A G 6 ? ? 116.14 119.90 -3.76 0.60 N 29 2 C5 A A 7 ? ? C6 A A 7 ? ? N1 A A 7 ? ? 121.18 117.70 3.48 0.50 N 30 2 N1 A A 7 ? ? C6 A A 7 ? ? N6 A A 7 ? ? 114.50 118.60 -4.10 0.60 N 31 2 C5 A A 8 ? ? C6 A A 8 ? ? N1 A A 8 ? ? 121.17 117.70 3.47 0.50 N 32 2 N1 A A 8 ? ? C6 A A 8 ? ? N6 A A 8 ? ? 114.68 118.60 -3.92 0.60 N 33 2 "O4'" A G 9 ? ? "C1'" A G 9 ? ? N9 A G 9 ? ? 113.52 108.50 5.02 0.70 N 34 2 N3 A G 9 ? ? C2 A G 9 ? ? N2 A G 9 ? ? 115.40 119.90 -4.50 0.70 N 35 2 N1 A G 9 ? ? C6 A G 9 ? ? O6 A G 9 ? ? 116.29 119.90 -3.61 0.60 N 36 2 "O4'" A C 10 ? ? "C1'" A C 10 ? ? N1 A C 10 ? ? 114.02 108.50 5.52 0.70 N 37 2 N3 A C 10 ? ? C2 A C 10 ? ? O2 A C 10 ? ? 117.62 121.90 -4.28 0.70 N 38 2 N3 B DG 1 ? ? C2 B DG 1 ? ? N2 B DG 1 ? ? 114.90 119.90 -5.00 0.70 N 39 2 "O4'" B DC 10 ? ? "C1'" B DC 10 ? ? N1 B DC 10 ? ? 110.46 108.30 2.16 0.30 N 40 3 N3 A G 1 ? ? C2 A G 1 ? ? N2 A G 1 ? ? 114.91 119.90 -4.99 0.70 N 41 3 C5 A A 2 ? ? C6 A A 2 ? ? N1 A A 2 ? ? 121.41 117.70 3.71 0.50 N 42 3 C5 A A 3 ? ? C6 A A 3 ? ? N1 A A 3 ? ? 121.52 117.70 3.82 0.50 N 43 3 N1 A A 3 ? ? C6 A A 3 ? ? N6 A A 3 ? ? 114.95 118.60 -3.65 0.60 N 44 3 "O4'" A G 4 ? ? "C1'" A G 4 ? ? N9 A G 4 ? ? 114.06 108.50 5.56 0.70 N 45 3 C5 A A 5 ? ? C6 A A 5 ? ? N1 A A 5 ? ? 121.47 117.70 3.77 0.50 N 46 3 "O4'" A G 6 ? ? "C1'" A G 6 ? ? N9 A G 6 ? ? 113.27 108.50 4.77 0.70 N 47 3 N3 A G 6 ? ? C2 A G 6 ? ? N2 A G 6 ? ? 115.14 119.90 -4.76 0.70 N 48 3 N1 A G 6 ? ? C6 A G 6 ? ? O6 A G 6 ? ? 116.10 119.90 -3.80 0.60 N 49 3 C5 A A 7 ? ? C6 A A 7 ? ? N1 A A 7 ? ? 121.54 117.70 3.84 0.50 N 50 3 N1 A A 7 ? ? C6 A A 7 ? ? N6 A A 7 ? ? 114.81 118.60 -3.79 0.60 N 51 3 C5 A A 8 ? ? C6 A A 8 ? ? N1 A A 8 ? ? 121.59 117.70 3.89 0.50 N 52 3 N1 A A 8 ? ? C6 A A 8 ? ? N6 A A 8 ? ? 114.84 118.60 -3.76 0.60 N 53 3 "O4'" A G 9 ? ? "C1'" A G 9 ? ? N9 A G 9 ? ? 113.73 108.50 5.23 0.70 N 54 3 "O4'" A C 10 ? ? "C1'" A C 10 ? ? N1 A C 10 ? ? 113.60 108.50 5.10 0.70 N 55 3 N3 A C 10 ? ? C2 A C 10 ? ? O2 A C 10 ? ? 117.60 121.90 -4.30 0.70 N 56 3 N3 B DG 1 ? ? C2 B DG 1 ? ? N2 B DG 1 ? ? 115.42 119.90 -4.48 0.70 N 57 4 "O4'" A G 1 ? ? "C1'" A G 1 ? ? N9 A G 1 ? ? 112.71 108.50 4.21 0.70 N 58 4 N3 A G 1 ? ? C2 A G 1 ? ? N2 A G 1 ? ? 114.70 119.90 -5.20 0.70 N 59 4 C5 A A 2 ? ? C6 A A 2 ? ? N1 A A 2 ? ? 121.35 117.70 3.65 0.50 N 60 4 C5 A A 3 ? ? C6 A A 3 ? ? N1 A A 3 ? ? 121.34 117.70 3.64 0.50 N 61 4 "O4'" A G 4 ? ? "C1'" A G 4 ? ? N9 A G 4 ? ? 113.36 108.50 4.86 0.70 N 62 4 N3 A G 4 ? ? C2 A G 4 ? ? N2 A G 4 ? ? 115.16 119.90 -4.74 0.70 N 63 4 C5 A A 5 ? ? C6 A A 5 ? ? N1 A A 5 ? ? 121.12 117.70 3.42 0.50 N 64 4 N1 A A 5 ? ? C6 A A 5 ? ? N6 A A 5 ? ? 114.94 118.60 -3.66 0.60 N 65 4 "O4'" A G 6 ? ? "C1'" A G 6 ? ? N9 A G 6 ? ? 114.08 108.50 5.58 0.70 N 66 4 N3 A G 6 ? ? C2 A G 6 ? ? N2 A G 6 ? ? 115.27 119.90 -4.63 0.70 N 67 4 C5 A A 7 ? ? C6 A A 7 ? ? N1 A A 7 ? ? 121.35 117.70 3.65 0.50 N 68 4 C5 A A 8 ? ? C6 A A 8 ? ? N1 A A 8 ? ? 121.32 117.70 3.62 0.50 N 69 4 N1 A A 8 ? ? C6 A A 8 ? ? N6 A A 8 ? ? 114.81 118.60 -3.79 0.60 N 70 4 "O4'" A G 9 ? ? "C1'" A G 9 ? ? N9 A G 9 ? ? 113.65 108.50 5.15 0.70 N 71 4 N3 A G 9 ? ? C2 A G 9 ? ? N2 A G 9 ? ? 115.34 119.90 -4.56 0.70 N 72 4 N1 A G 9 ? ? C6 A G 9 ? ? O6 A G 9 ? ? 116.20 119.90 -3.70 0.60 N 73 4 "O4'" A C 10 ? ? "C1'" A C 10 ? ? N1 A C 10 ? ? 113.96 108.50 5.46 0.70 N 74 4 N3 A C 10 ? ? C2 A C 10 ? ? O2 A C 10 ? ? 117.54 121.90 -4.36 0.70 N 75 4 "O4'" B DG 1 ? ? "C1'" B DG 1 ? ? N9 B DG 1 ? ? 111.29 108.30 2.99 0.30 N 76 4 N3 B DG 1 ? ? C2 B DG 1 ? ? N2 B DG 1 ? ? 115.41 119.90 -4.49 0.70 N 77 4 "O4'" B DC 10 ? ? "C1'" B DC 10 ? ? N1 B DC 10 ? ? 110.45 108.30 2.15 0.30 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 G A 1 ? ? 0.060 'SIDE CHAIN' 2 2 DG B 1 ? ? 0.064 'SIDE CHAIN' 3 4 DG B 1 ? ? 0.071 'SIDE CHAIN' # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 B 5PC 2 B 5PC 2 ? DC ? 2 B PDU 3 B PDU 3 ? DU ? 3 B PDU 4 B PDU 4 ? DU ? 4 B 5PC 5 B 5PC 5 ? DC ? 5 B PDU 6 B PDU 6 ? DU ? 6 B 5PC 7 B 5PC 7 ? DC ? 7 B PDU 8 B PDU 8 ? DU ? 8 B PDU 9 B PDU 9 ? DU ? # _pdbx_nmr_ensemble.entry_id 1OO7 _pdbx_nmr_ensemble.conformers_calculated_total_number 4 _pdbx_nmr_ensemble.conformers_submitted_total_number 4 _pdbx_nmr_ensemble.conformer_selection_criteria 'all calculated structures submitted' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1OO7 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'minimized average structure' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents ? _pdbx_nmr_sample_details.solvent_system '100% D2O OR 90% H2O, 10% D2O' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 303 _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength '100 mM KCL' _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 NOESY 1 2 1 COSY 1 # _pdbx_nmr_details.entry_id 1OO7 _pdbx_nmr_details.text 'THE STRUCTURE WAS DETERMINED FROM 2D HOMONUCLEAR NMR EXPERIMENTS USING UNLABELLED SAMPLE' # _pdbx_nmr_refine.entry_id 1OO7 _pdbx_nmr_refine.method 'MULTIPLE STARTING CONFORMATIONS' _pdbx_nmr_refine.details ;DISTANCE CONSTRAINTS FOR GLYCOSIDIC TORSION ANGLES, PENTOSE PSEUDOROTATIONAL PHASE ANGLES/AMPLITUDES AND FRACTION OF SOUTH STATE SUGARS CALCULATED FROM NOE BUILD-UP CURVES AND COUPLING CONSTANTS BY A LEAST-SQUARES/GRID SEARCH METHOD IMPLEMENTED IN NUCFIT AND PFIT (A.N. LANE, NIMR, UK). TEN DIFFERENT SETS OF UNIQUE RESTRAINTS GENERATED 10 STRUCTURES, THE AVERAGE OF WHICH SATISFIED THE EXPERIMENTALLY DERIVED FRACTION OF SOUTH STATE SUGARS BETTER THAN STRUCTURES GENERATED FROM A SINGLE SET OF RESTRAINTS. INTERNUCLEOTIDE DISTANCE CONSTRAINTS CALCULATED FROM NOE-BUILD-UP CURVES. STRUCTURES CALCULATED BY SIMULATED ANNEALING/RMD PROTOCOL WITHIN DISCOVER 95.0 USING AN AMBER FORCE FIELD AND A DISTANCE DIELECTRIC CONSTANT. ; _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement Amber 7.0 'CORNELL, W.D., ET AL.' 1 processing Felix 95.0 Biosym 2 'data analysis' NUCFIT ? 'Lane, A.N.' 3 'data analysis' pfit ? 'Conte, M.R., Bauer, C.J., Lane, A.N.' 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5PC OP3 O N N 1 5PC P P N N 2 5PC OP1 O N N 3 5PC OP2 O N N 4 5PC "C5'" C N N 5 5PC "O5'" O N N 6 5PC "C4'" C N R 7 5PC "O4'" O N N 8 5PC "C3'" C N S 9 5PC "O3'" O N N 10 5PC "C2'" C N N 11 5PC "C1'" C N R 12 5PC N1 N N N 13 5PC C2 C N N 14 5PC O2 O N N 15 5PC N3 N N N 16 5PC C4 C N N 17 5PC N4 N N N 18 5PC C5 C N N 19 5PC C6 C N N 20 5PC C7 C N N 21 5PC C8 C N N 22 5PC C9 C N N 23 5PC HOP3 H N N 24 5PC HOP2 H N N 25 5PC "H5'" H N N 26 5PC "H5''" H N N 27 5PC "H4'" H N N 28 5PC "H3'" H N N 29 5PC "HO3'" H N N 30 5PC "H2'" H N N 31 5PC "H2''" H N N 32 5PC "H1'" H N N 33 5PC H41 H N N 34 5PC H42 H N N 35 5PC H6 H N N 36 5PC H91 H N N 37 5PC H92 H N N 38 5PC H93 H N N 39 A OP3 O N N 40 A P P N N 41 A OP1 O N N 42 A OP2 O N N 43 A "O5'" O N N 44 A "C5'" C N N 45 A "C4'" C N R 46 A "O4'" O N N 47 A "C3'" C N S 48 A "O3'" O N N 49 A "C2'" C N R 50 A "O2'" O N N 51 A "C1'" C N R 52 A N9 N Y N 53 A C8 C Y N 54 A N7 N Y N 55 A C5 C Y N 56 A C6 C Y N 57 A N6 N N N 58 A N1 N Y N 59 A C2 C Y N 60 A N3 N Y N 61 A C4 C Y N 62 A HOP3 H N N 63 A HOP2 H N N 64 A "H5'" H N N 65 A "H5''" H N N 66 A "H4'" H N N 67 A "H3'" H N N 68 A "HO3'" H N N 69 A "H2'" H N N 70 A "HO2'" H N N 71 A "H1'" H N N 72 A H8 H N N 73 A H61 H N N 74 A H62 H N N 75 A H2 H N N 76 C OP3 O N N 77 C P P N N 78 C OP1 O N N 79 C OP2 O N N 80 C "O5'" O N N 81 C "C5'" C N N 82 C "C4'" C N R 83 C "O4'" O N N 84 C "C3'" C N S 85 C "O3'" O N N 86 C "C2'" C N R 87 C "O2'" O N N 88 C "C1'" C N R 89 C N1 N N N 90 C C2 C N N 91 C O2 O N N 92 C N3 N N N 93 C C4 C N N 94 C N4 N N N 95 C C5 C N N 96 C C6 C N N 97 C HOP3 H N N 98 C HOP2 H N N 99 C "H5'" H N N 100 C "H5''" H N N 101 C "H4'" H N N 102 C "H3'" H N N 103 C "HO3'" H N N 104 C "H2'" H N N 105 C "HO2'" H N N 106 C "H1'" H N N 107 C H41 H N N 108 C H42 H N N 109 C H5 H N N 110 C H6 H N N 111 DC OP3 O N N 112 DC P P N N 113 DC OP1 O N N 114 DC OP2 O N N 115 DC "O5'" O N N 116 DC "C5'" C N N 117 DC "C4'" C N R 118 DC "O4'" O N N 119 DC "C3'" C N S 120 DC "O3'" O N N 121 DC "C2'" C N N 122 DC "C1'" C N R 123 DC N1 N N N 124 DC C2 C N N 125 DC O2 O N N 126 DC N3 N N N 127 DC C4 C N N 128 DC N4 N N N 129 DC C5 C N N 130 DC C6 C N N 131 DC HOP3 H N N 132 DC HOP2 H N N 133 DC "H5'" H N N 134 DC "H5''" H N N 135 DC "H4'" H N N 136 DC "H3'" H N N 137 DC "HO3'" H N N 138 DC "H2'" H N N 139 DC "H2''" H N N 140 DC "H1'" H N N 141 DC H41 H N N 142 DC H42 H N N 143 DC H5 H N N 144 DC H6 H N N 145 DG OP3 O N N 146 DG P P N N 147 DG OP1 O N N 148 DG OP2 O N N 149 DG "O5'" O N N 150 DG "C5'" C N N 151 DG "C4'" C N R 152 DG "O4'" O N N 153 DG "C3'" C N S 154 DG "O3'" O N N 155 DG "C2'" C N N 156 DG "C1'" C N R 157 DG N9 N Y N 158 DG C8 C Y N 159 DG N7 N Y N 160 DG C5 C Y N 161 DG C6 C N N 162 DG O6 O N N 163 DG N1 N N N 164 DG C2 C N N 165 DG N2 N N N 166 DG N3 N N N 167 DG C4 C Y N 168 DG HOP3 H N N 169 DG HOP2 H N N 170 DG "H5'" H N N 171 DG "H5''" H N N 172 DG "H4'" H N N 173 DG "H3'" H N N 174 DG "HO3'" H N N 175 DG "H2'" H N N 176 DG "H2''" H N N 177 DG "H1'" H N N 178 DG H8 H N N 179 DG H1 H N N 180 DG H21 H N N 181 DG H22 H N N 182 G OP3 O N N 183 G P P N N 184 G OP1 O N N 185 G OP2 O N N 186 G "O5'" O N N 187 G "C5'" C N N 188 G "C4'" C N R 189 G "O4'" O N N 190 G "C3'" C N S 191 G "O3'" O N N 192 G "C2'" C N R 193 G "O2'" O N N 194 G "C1'" C N R 195 G N9 N Y N 196 G C8 C Y N 197 G N7 N Y N 198 G C5 C Y N 199 G C6 C N N 200 G O6 O N N 201 G N1 N N N 202 G C2 C N N 203 G N2 N N N 204 G N3 N N N 205 G C4 C Y N 206 G HOP3 H N N 207 G HOP2 H N N 208 G "H5'" H N N 209 G "H5''" H N N 210 G "H4'" H N N 211 G "H3'" H N N 212 G "HO3'" H N N 213 G "H2'" H N N 214 G "HO2'" H N N 215 G "H1'" H N N 216 G H8 H N N 217 G H1 H N N 218 G H21 H N N 219 G H22 H N N 220 PDU P P N N 221 PDU OP2 O N N 222 PDU OP1 O N N 223 PDU "O5'" O N N 224 PDU "C5'" C N N 225 PDU "C4'" C N R 226 PDU "O4'" O N N 227 PDU "C3'" C N S 228 PDU "O3'" O N N 229 PDU "C2'" C N N 230 PDU "C1'" C N R 231 PDU N1 N N N 232 PDU C2 C N N 233 PDU O2 O N N 234 PDU N3 N N N 235 PDU C4 C N N 236 PDU O4 O N N 237 PDU C5 C N N 238 PDU C5A C N N 239 PDU C5B C N N 240 PDU C5M C N N 241 PDU C6 C N N 242 PDU OP3 O N N 243 PDU HOP2 H N N 244 PDU "H5'" H N N 245 PDU "H5''" H N N 246 PDU "H4'" H N N 247 PDU "H3'" H N N 248 PDU H2 H N N 249 PDU "H2''" H N N 250 PDU "H2'" H N N 251 PDU "H1'" H N N 252 PDU H3 H N N 253 PDU H71 H N N 254 PDU H72 H N N 255 PDU H73 H N N 256 PDU H6 H N N 257 PDU HOP3 H N N 258 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5PC OP3 P sing N N 1 5PC OP3 HOP3 sing N N 2 5PC P OP1 doub N N 3 5PC P OP2 sing N N 4 5PC P "O5'" sing N N 5 5PC OP2 HOP2 sing N N 6 5PC "C5'" "O5'" sing N N 7 5PC "C5'" "C4'" sing N N 8 5PC "C5'" "H5'" sing N N 9 5PC "C5'" "H5''" sing N N 10 5PC "C4'" "O4'" sing N N 11 5PC "C4'" "C3'" sing N N 12 5PC "C4'" "H4'" sing N N 13 5PC "O4'" "C1'" sing N N 14 5PC "C3'" "O3'" sing N N 15 5PC "C3'" "C2'" sing N N 16 5PC "C3'" "H3'" sing N N 17 5PC "O3'" "HO3'" sing N N 18 5PC "C2'" "C1'" sing N N 19 5PC "C2'" "H2'" sing N N 20 5PC "C2'" "H2''" sing N N 21 5PC "C1'" N1 sing N N 22 5PC "C1'" "H1'" sing N N 23 5PC N1 C2 sing N N 24 5PC N1 C6 sing N N 25 5PC C2 O2 doub N N 26 5PC C2 N3 sing N N 27 5PC N3 C4 doub N N 28 5PC C4 N4 sing N N 29 5PC C4 C5 sing N N 30 5PC N4 H41 sing N N 31 5PC N4 H42 sing N N 32 5PC C5 C6 doub N N 33 5PC C5 C7 sing N N 34 5PC C6 H6 sing N N 35 5PC C7 C8 trip N N 36 5PC C8 C9 sing N N 37 5PC C9 H91 sing N N 38 5PC C9 H92 sing N N 39 5PC C9 H93 sing N N 40 A OP3 P sing N N 41 A OP3 HOP3 sing N N 42 A P OP1 doub N N 43 A P OP2 sing N N 44 A P "O5'" sing N N 45 A OP2 HOP2 sing N N 46 A "O5'" "C5'" sing N N 47 A "C5'" "C4'" sing N N 48 A "C5'" "H5'" sing N N 49 A "C5'" "H5''" sing N N 50 A "C4'" "O4'" sing N N 51 A "C4'" "C3'" sing N N 52 A "C4'" "H4'" sing N N 53 A "O4'" "C1'" sing N N 54 A "C3'" "O3'" sing N N 55 A "C3'" "C2'" sing N N 56 A "C3'" "H3'" sing N N 57 A "O3'" "HO3'" sing N N 58 A "C2'" "O2'" sing N N 59 A "C2'" "C1'" sing N N 60 A "C2'" "H2'" sing N N 61 A "O2'" "HO2'" sing N N 62 A "C1'" N9 sing N N 63 A "C1'" "H1'" sing N N 64 A N9 C8 sing Y N 65 A N9 C4 sing Y N 66 A C8 N7 doub Y N 67 A C8 H8 sing N N 68 A N7 C5 sing Y N 69 A C5 C6 sing Y N 70 A C5 C4 doub Y N 71 A C6 N6 sing N N 72 A C6 N1 doub Y N 73 A N6 H61 sing N N 74 A N6 H62 sing N N 75 A N1 C2 sing Y N 76 A C2 N3 doub Y N 77 A C2 H2 sing N N 78 A N3 C4 sing Y N 79 C OP3 P sing N N 80 C OP3 HOP3 sing N N 81 C P OP1 doub N N 82 C P OP2 sing N N 83 C P "O5'" sing N N 84 C OP2 HOP2 sing N N 85 C "O5'" "C5'" sing N N 86 C "C5'" "C4'" sing N N 87 C "C5'" "H5'" sing N N 88 C "C5'" "H5''" sing N N 89 C "C4'" "O4'" sing N N 90 C "C4'" "C3'" sing N N 91 C "C4'" "H4'" sing N N 92 C "O4'" "C1'" sing N N 93 C "C3'" "O3'" sing N N 94 C "C3'" "C2'" sing N N 95 C "C3'" "H3'" sing N N 96 C "O3'" "HO3'" sing N N 97 C "C2'" "O2'" sing N N 98 C "C2'" "C1'" sing N N 99 C "C2'" "H2'" sing N N 100 C "O2'" "HO2'" sing N N 101 C "C1'" N1 sing N N 102 C "C1'" "H1'" sing N N 103 C N1 C2 sing N N 104 C N1 C6 sing N N 105 C C2 O2 doub N N 106 C C2 N3 sing N N 107 C N3 C4 doub N N 108 C C4 N4 sing N N 109 C C4 C5 sing N N 110 C N4 H41 sing N N 111 C N4 H42 sing N N 112 C C5 C6 doub N N 113 C C5 H5 sing N N 114 C C6 H6 sing N N 115 DC OP3 P sing N N 116 DC OP3 HOP3 sing N N 117 DC P OP1 doub N N 118 DC P OP2 sing N N 119 DC P "O5'" sing N N 120 DC OP2 HOP2 sing N N 121 DC "O5'" "C5'" sing N N 122 DC "C5'" "C4'" sing N N 123 DC "C5'" "H5'" sing N N 124 DC "C5'" "H5''" sing N N 125 DC "C4'" "O4'" sing N N 126 DC "C4'" "C3'" sing N N 127 DC "C4'" "H4'" sing N N 128 DC "O4'" "C1'" sing N N 129 DC "C3'" "O3'" sing N N 130 DC "C3'" "C2'" sing N N 131 DC "C3'" "H3'" sing N N 132 DC "O3'" "HO3'" sing N N 133 DC "C2'" "C1'" sing N N 134 DC "C2'" "H2'" sing N N 135 DC "C2'" "H2''" sing N N 136 DC "C1'" N1 sing N N 137 DC "C1'" "H1'" sing N N 138 DC N1 C2 sing N N 139 DC N1 C6 sing N N 140 DC C2 O2 doub N N 141 DC C2 N3 sing N N 142 DC N3 C4 doub N N 143 DC C4 N4 sing N N 144 DC C4 C5 sing N N 145 DC N4 H41 sing N N 146 DC N4 H42 sing N N 147 DC C5 C6 doub N N 148 DC C5 H5 sing N N 149 DC C6 H6 sing N N 150 DG OP3 P sing N N 151 DG OP3 HOP3 sing N N 152 DG P OP1 doub N N 153 DG P OP2 sing N N 154 DG P "O5'" sing N N 155 DG OP2 HOP2 sing N N 156 DG "O5'" "C5'" sing N N 157 DG "C5'" "C4'" sing N N 158 DG "C5'" "H5'" sing N N 159 DG "C5'" "H5''" sing N N 160 DG "C4'" "O4'" sing N N 161 DG "C4'" "C3'" sing N N 162 DG "C4'" "H4'" sing N N 163 DG "O4'" "C1'" sing N N 164 DG "C3'" "O3'" sing N N 165 DG "C3'" "C2'" sing N N 166 DG "C3'" "H3'" sing N N 167 DG "O3'" "HO3'" sing N N 168 DG "C2'" "C1'" sing N N 169 DG "C2'" "H2'" sing N N 170 DG "C2'" "H2''" sing N N 171 DG "C1'" N9 sing N N 172 DG "C1'" "H1'" sing N N 173 DG N9 C8 sing Y N 174 DG N9 C4 sing Y N 175 DG C8 N7 doub Y N 176 DG C8 H8 sing N N 177 DG N7 C5 sing Y N 178 DG C5 C6 sing N N 179 DG C5 C4 doub Y N 180 DG C6 O6 doub N N 181 DG C6 N1 sing N N 182 DG N1 C2 sing N N 183 DG N1 H1 sing N N 184 DG C2 N2 sing N N 185 DG C2 N3 doub N N 186 DG N2 H21 sing N N 187 DG N2 H22 sing N N 188 DG N3 C4 sing N N 189 G OP3 P sing N N 190 G OP3 HOP3 sing N N 191 G P OP1 doub N N 192 G P OP2 sing N N 193 G P "O5'" sing N N 194 G OP2 HOP2 sing N N 195 G "O5'" "C5'" sing N N 196 G "C5'" "C4'" sing N N 197 G "C5'" "H5'" sing N N 198 G "C5'" "H5''" sing N N 199 G "C4'" "O4'" sing N N 200 G "C4'" "C3'" sing N N 201 G "C4'" "H4'" sing N N 202 G "O4'" "C1'" sing N N 203 G "C3'" "O3'" sing N N 204 G "C3'" "C2'" sing N N 205 G "C3'" "H3'" sing N N 206 G "O3'" "HO3'" sing N N 207 G "C2'" "O2'" sing N N 208 G "C2'" "C1'" sing N N 209 G "C2'" "H2'" sing N N 210 G "O2'" "HO2'" sing N N 211 G "C1'" N9 sing N N 212 G "C1'" "H1'" sing N N 213 G N9 C8 sing Y N 214 G N9 C4 sing Y N 215 G C8 N7 doub Y N 216 G C8 H8 sing N N 217 G N7 C5 sing Y N 218 G C5 C6 sing N N 219 G C5 C4 doub Y N 220 G C6 O6 doub N N 221 G C6 N1 sing N N 222 G N1 C2 sing N N 223 G N1 H1 sing N N 224 G C2 N2 sing N N 225 G C2 N3 doub N N 226 G N2 H21 sing N N 227 G N2 H22 sing N N 228 G N3 C4 sing N N 229 PDU C5M C5B sing N N 230 PDU OP1 P doub N N 231 PDU C5B C5A trip N N 232 PDU C5A C5 sing N N 233 PDU "C2'" "C3'" sing N N 234 PDU "C2'" "C1'" sing N N 235 PDU "C3'" "O3'" sing N N 236 PDU "C3'" "C4'" sing N N 237 PDU C5 C6 doub N N 238 PDU C5 C4 sing N N 239 PDU P "O5'" sing N N 240 PDU P OP2 sing N N 241 PDU "O5'" "C5'" sing N N 242 PDU O4 C4 doub N N 243 PDU C6 N1 sing N N 244 PDU C4 N3 sing N N 245 PDU "C5'" "C4'" sing N N 246 PDU N1 "C1'" sing N N 247 PDU N1 C2 sing N N 248 PDU "C4'" "O4'" sing N N 249 PDU N3 C2 sing N N 250 PDU "C1'" "O4'" sing N N 251 PDU C2 O2 doub N N 252 PDU P OP3 sing N N 253 PDU OP2 HOP2 sing N N 254 PDU "C5'" "H5'" sing N N 255 PDU "C5'" "H5''" sing N N 256 PDU "C4'" "H4'" sing N N 257 PDU "C3'" "H3'" sing N N 258 PDU "O3'" H2 sing N N 259 PDU "C2'" "H2''" sing N N 260 PDU "C2'" "H2'" sing N N 261 PDU "C1'" "H1'" sing N N 262 PDU N3 H3 sing N N 263 PDU C5M H71 sing N N 264 PDU C5M H72 sing N N 265 PDU C5M H73 sing N N 266 PDU C6 H6 sing N N 267 PDU OP3 HOP3 sing N N 268 # _ndb_struct_conf_na.entry_id 1OO7 _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B DC 10 1_555 -0.878 -0.165 0.000 -5.969 -5.374 1.464 1 A_G1:DC10_B A 1 ? B 10 ? 19 1 1 A A 2 1_555 B PDU 9 1_555 0.141 0.087 -0.142 -4.838 -7.219 0.925 2 A_A2:PDU9_B A 2 ? B 9 ? 20 1 1 A A 3 1_555 B PDU 8 1_555 0.053 0.105 -0.121 -4.809 -7.620 0.765 3 A_A3:PDU8_B A 3 ? B 8 ? 20 1 1 A G 4 1_555 B 5PC 7 1_555 -0.666 -0.184 0.087 -1.907 -6.815 -0.137 4 A_G4:5PC7_B A 4 ? B 7 ? 19 1 1 A A 5 1_555 B PDU 6 1_555 -0.024 0.081 -0.171 -5.851 -5.749 1.419 5 A_A5:PDU6_B A 5 ? B 6 ? 20 1 1 A G 6 1_555 B 5PC 5 1_555 -0.683 -0.199 0.132 -2.322 -6.410 -0.466 6 A_G6:5PC5_B A 6 ? B 5 ? 19 1 1 A A 7 1_555 B PDU 4 1_555 0.017 0.080 -0.284 -9.577 -6.146 0.461 7 A_A7:PDU4_B A 7 ? B 4 ? 20 1 1 A A 8 1_555 B PDU 3 1_555 0.027 0.101 -0.362 -13.134 -6.598 0.990 8 A_A8:PDU3_B A 8 ? B 3 ? 20 1 1 A G 9 1_555 B 5PC 2 1_555 -0.702 -0.179 -0.212 -10.837 -10.455 0.528 9 A_G9:5PC2_B A 9 ? B 2 ? 19 1 1 A C 10 1_555 B DG 1 1_555 1.148 -0.275 0.070 -15.058 5.091 0.728 10 A_C10:DG1_B A 10 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B DC 10 1_555 A A 2 1_555 B PDU 9 1_555 0.052 -1.032 3.348 1.755 3.927 39.632 -1.972 0.128 3.235 5.771 -2.580 39.855 1 AA_G1A2:PDU9DC10_BB A 1 ? B 10 ? A 2 ? B 9 ? 1 A A 2 1_555 B PDU 9 1_555 A A 3 1_555 B PDU 8 1_555 0.087 -1.501 3.277 1.502 5.431 30.120 -3.873 0.120 2.968 10.337 -2.858 30.631 2 AA_A2A3:PDU8PDU9_BB A 2 ? B 9 ? A 3 ? B 8 ? 1 A A 3 1_555 B PDU 8 1_555 A G 4 1_555 B 5PC 7 1_555 0.229 -1.680 3.135 -0.202 6.232 26.929 -4.885 -0.523 2.684 13.160 0.427 27.629 3 AA_A3G4:5PC7PDU8_BB A 3 ? B 8 ? A 4 ? B 7 ? 1 A G 4 1_555 B 5PC 7 1_555 A A 5 1_555 B PDU 6 1_555 0.338 -1.413 3.386 4.784 3.964 35.033 -2.902 0.157 3.229 6.522 -7.870 35.563 4 AA_G4A5:PDU65PC7_BB A 4 ? B 7 ? A 5 ? B 6 ? 1 A A 5 1_555 B PDU 6 1_555 A G 6 1_555 B 5PC 5 1_555 0.374 -1.880 3.138 -0.139 4.317 26.436 -5.079 -0.840 2.799 9.360 0.301 26.780 5 AA_A5G6:5PC5PDU6_BB A 5 ? B 6 ? A 6 ? B 5 ? 1 A G 6 1_555 B 5PC 5 1_555 A A 7 1_555 B PDU 4 1_555 0.428 -1.443 3.512 6.664 3.428 36.254 -2.765 0.282 3.390 5.437 -10.570 36.995 6 AA_G6A7:PDU45PC5_BB A 6 ? B 5 ? A 7 ? B 4 ? 1 A A 7 1_555 B PDU 4 1_555 A A 8 1_555 B PDU 3 1_555 0.186 -1.529 3.474 3.565 5.537 30.442 -3.934 0.351 3.154 10.392 -6.691 31.130 7 AA_A7A8:PDU3PDU4_BB A 7 ? B 4 ? A 8 ? B 3 ? 1 A A 8 1_555 B PDU 3 1_555 A G 9 1_555 B 5PC 2 1_555 0.237 -1.331 3.335 1.864 4.568 28.253 -3.707 -0.061 3.094 9.268 -3.783 28.672 8 AA_A8G9:5PC2PDU3_BB A 8 ? B 3 ? A 9 ? B 2 ? 1 A G 9 1_555 B 5PC 2 1_555 A C 10 1_555 B DG 1 1_555 0.394 -1.175 3.473 -0.561 2.888 41.165 -1.994 -0.622 3.381 4.102 0.797 41.265 9 AA_G9C10:DG15PC2_BB A 9 ? B 2 ? A 10 ? B 1 ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 UNITY Varian 500 ? 2 UNITYPLUS Varian 600 ? # _atom_sites.entry_id 1OO7 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_