data_1PDV # _entry.id 1PDV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1PDV RCSB RCSB019259 WWPDB D_1000019259 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1PDW 'Crystal structure of human DJ-1, P 21 space group' unspecified PDB 1PE0 'Crystal structure of the K130R mutant of human DJ-1' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1PDV _pdbx_database_status.recvd_initial_deposition_date 2003-05-20 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tao, X.' 1 'Tong, L.' 2 # _citation.id primary _citation.title ;Crystal Structure of Human DJ-1, a Protein Associated with Early Onset Parkinson's Disease. ; _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 278 _citation.page_first 31372 _citation.page_last 31379 _citation.year 2003 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12761214 _citation.pdbx_database_id_DOI 10.1074/jbc.M304221200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Tao, X.' 1 primary 'Tong, L.' 2 # _cell.entry_id 1PDV _cell.length_a 75.658 _cell.length_b 75.658 _cell.length_c 75.488 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PDV _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man DJ-1 21175.785 1 ? ? ? ? 2 water nat water 18.015 192 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;MASKRALVILAKGAEE(MSE)ETVIPVDV(MSE)RRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVL PGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDK(MSE)(MSE)NGGHYTYSEN RVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLKDLEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQ NLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGT SFEFALAIVEALNGKEVAAQVKAPLVLKDLEHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 SER n 1 4 LYS n 1 5 ARG n 1 6 ALA n 1 7 LEU n 1 8 VAL n 1 9 ILE n 1 10 LEU n 1 11 ALA n 1 12 LYS n 1 13 GLY n 1 14 ALA n 1 15 GLU n 1 16 GLU n 1 17 MSE n 1 18 GLU n 1 19 THR n 1 20 VAL n 1 21 ILE n 1 22 PRO n 1 23 VAL n 1 24 ASP n 1 25 VAL n 1 26 MSE n 1 27 ARG n 1 28 ARG n 1 29 ALA n 1 30 GLY n 1 31 ILE n 1 32 LYS n 1 33 VAL n 1 34 THR n 1 35 VAL n 1 36 ALA n 1 37 GLY n 1 38 LEU n 1 39 ALA n 1 40 GLY n 1 41 LYS n 1 42 ASP n 1 43 PRO n 1 44 VAL n 1 45 GLN n 1 46 CYS n 1 47 SER n 1 48 ARG n 1 49 ASP n 1 50 VAL n 1 51 VAL n 1 52 ILE n 1 53 CYS n 1 54 PRO n 1 55 ASP n 1 56 ALA n 1 57 SER n 1 58 LEU n 1 59 GLU n 1 60 ASP n 1 61 ALA n 1 62 LYS n 1 63 LYS n 1 64 GLU n 1 65 GLY n 1 66 PRO n 1 67 TYR n 1 68 ASP n 1 69 VAL n 1 70 VAL n 1 71 VAL n 1 72 LEU n 1 73 PRO n 1 74 GLY n 1 75 GLY n 1 76 ASN n 1 77 LEU n 1 78 GLY n 1 79 ALA n 1 80 GLN n 1 81 ASN n 1 82 LEU n 1 83 SER n 1 84 GLU n 1 85 SER n 1 86 ALA n 1 87 ALA n 1 88 VAL n 1 89 LYS n 1 90 GLU n 1 91 ILE n 1 92 LEU n 1 93 LYS n 1 94 GLU n 1 95 GLN n 1 96 GLU n 1 97 ASN n 1 98 ARG n 1 99 LYS n 1 100 GLY n 1 101 LEU n 1 102 ILE n 1 103 ALA n 1 104 ALA n 1 105 ILE n 1 106 CYS n 1 107 ALA n 1 108 GLY n 1 109 PRO n 1 110 THR n 1 111 ALA n 1 112 LEU n 1 113 LEU n 1 114 ALA n 1 115 HIS n 1 116 GLU n 1 117 ILE n 1 118 GLY n 1 119 PHE n 1 120 GLY n 1 121 SER n 1 122 LYS n 1 123 VAL n 1 124 THR n 1 125 THR n 1 126 HIS n 1 127 PRO n 1 128 LEU n 1 129 ALA n 1 130 LYS n 1 131 ASP n 1 132 LYS n 1 133 MSE n 1 134 MSE n 1 135 ASN n 1 136 GLY n 1 137 GLY n 1 138 HIS n 1 139 TYR n 1 140 THR n 1 141 TYR n 1 142 SER n 1 143 GLU n 1 144 ASN n 1 145 ARG n 1 146 VAL n 1 147 GLU n 1 148 LYS n 1 149 ASP n 1 150 GLY n 1 151 LEU n 1 152 ILE n 1 153 LEU n 1 154 THR n 1 155 SER n 1 156 ARG n 1 157 GLY n 1 158 PRO n 1 159 GLY n 1 160 THR n 1 161 SER n 1 162 PHE n 1 163 GLU n 1 164 PHE n 1 165 ALA n 1 166 LEU n 1 167 ALA n 1 168 ILE n 1 169 VAL n 1 170 GLU n 1 171 ALA n 1 172 LEU n 1 173 ASN n 1 174 GLY n 1 175 LYS n 1 176 GLU n 1 177 VAL n 1 178 ALA n 1 179 ALA n 1 180 GLN n 1 181 VAL n 1 182 LYS n 1 183 ALA n 1 184 PRO n 1 185 LEU n 1 186 VAL n 1 187 LEU n 1 188 LYS n 1 189 ASP n 1 190 LEU n 1 191 GLU n 1 192 HIS n 1 193 HIS n 1 194 HIS n 1 195 HIS n 1 196 HIS n 1 197 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PARK7_HUMAN _struct_ref.pdbx_db_accession Q99497 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQ NLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGT SFEFALAIVEALNGKEVAAQVKAPLVLKD ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1PDV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 189 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q99497 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 189 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 189 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1PDV MSE A 17 ? UNP Q99497 MET 17 'MODIFIED RESIDUE' 17 1 1 1PDV MSE A 26 ? UNP Q99497 MET 26 'MODIFIED RESIDUE' 26 2 1 1PDV MSE A 133 ? UNP Q99497 MET 133 'MODIFIED RESIDUE' 133 3 1 1PDV MSE A 134 ? UNP Q99497 MET 134 'MODIFIED RESIDUE' 134 4 1 1PDV LEU A 190 ? UNP Q99497 ? ? 'EXPRESSION TAG' 190 5 1 1PDV GLU A 191 ? UNP Q99497 ? ? 'EXPRESSION TAG' 191 6 1 1PDV HIS A 192 ? UNP Q99497 ? ? 'EXPRESSION TAG' 192 7 1 1PDV HIS A 193 ? UNP Q99497 ? ? 'EXPRESSION TAG' 193 8 1 1PDV HIS A 194 ? UNP Q99497 ? ? 'EXPRESSION TAG' 194 9 1 1PDV HIS A 195 ? UNP Q99497 ? ? 'EXPRESSION TAG' 195 10 1 1PDV HIS A 196 ? UNP Q99497 ? ? 'EXPRESSION TAG' 196 11 1 1PDV HIS A 197 ? UNP Q99497 ? ? 'EXPRESSION TAG' 197 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1PDV _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.94 _exptl_crystal.density_percent_sol 58.22 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8 _exptl_crystal_grow.pdbx_details '10% PEG3350, 100 mM Tris, pH 8, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2003-04-09 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9793 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X4A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X4A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9793 # _reflns.entry_id 1PDV _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 20 _reflns.d_resolution_high 1.8 _reflns.number_obs 43612 _reflns.number_all 44954 _reflns.percent_possible_obs 98 _reflns.pdbx_Rmerge_I_obs 0.049 _reflns.pdbx_Rsym_value 0.049 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 17.0 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.86 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.206 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1PDV _refine.ls_number_reflns_obs 41325 _refine.ls_number_reflns_all 44954 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 22 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 16.49 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 92.4 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19 _refine.ls_R_factor_R_free 0.215 _refine.ls_R_factor_R_free_error 0.004 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 7.2 _refine.ls_number_reflns_R_free 2978 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 24.0 _refine.aniso_B[1][1] 2.58 _refine.aniso_B[2][2] 2.58 _refine.aniso_B[3][3] -5.16 _refine.aniso_B[1][2] 1.83 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.347048 _refine.solvent_model_param_bsol 45.8503 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1PDV _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free 0.23 _refine_analyze.Luzzati_sigma_a_free 0.17 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1375 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 192 _refine_hist.number_atoms_total 1567 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 16.49 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.004 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 22.5 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.93 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.17 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 1.88 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.05 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 2.91 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 10 _refine_ls_shell.d_res_high 1.80 _refine_ls_shell.d_res_low 1.86 _refine_ls_shell.number_reflns_R_work 3354 _refine_ls_shell.R_factor_R_work 0.219 _refine_ls_shell.percent_reflns_obs 81.5 _refine_ls_shell.R_factor_R_free 0.233 _refine_ls_shell.R_factor_R_free_error 0.015 _refine_ls_shell.percent_reflns_R_free 7.1 _refine_ls_shell.number_reflns_R_free 257 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM ? 'X-RAY DIFFRACTION' # _struct.entry_id 1PDV _struct.title 'Crystal structure of human DJ-1, P 31 2 1 space group' _struct.pdbx_descriptor DJ-1 _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1PDV _struct_keywords.pdbx_keywords 'PROTEIN BINDING' _struct_keywords.text 'DJ-1, PROTEIN BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ;crystallographic dimer, with a monomer in the asymmetric unit ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 15 ? ALA A 29 ? GLU A 15 ALA A 29 1 ? 15 HELX_P HELX_P2 2 LEU A 58 ? LYS A 63 ? LEU A 58 LYS A 63 1 ? 6 HELX_P HELX_P3 3 GLY A 75 ? SER A 85 ? GLY A 75 SER A 85 1 ? 11 HELX_P HELX_P4 4 SER A 85 ? ARG A 98 ? SER A 85 ARG A 98 1 ? 14 HELX_P HELX_P5 5 PRO A 109 ? HIS A 115 ? PRO A 109 HIS A 115 1 ? 7 HELX_P HELX_P6 6 HIS A 126 ? LEU A 128 ? HIS A 126 LEU A 128 5 ? 3 HELX_P HELX_P7 7 ALA A 129 ? MSE A 134 ? ALA A 129 MSE A 134 1 ? 6 HELX_P HELX_P8 8 GLY A 157 ? GLY A 159 ? GLY A 157 GLY A 159 5 ? 3 HELX_P HELX_P9 9 THR A 160 ? GLY A 174 ? THR A 160 GLY A 174 1 ? 15 HELX_P HELX_P10 10 GLY A 174 ? ALA A 183 ? GLY A 174 ALA A 183 1 ? 10 HELX_P HELX_P11 11 PRO A 184 ? VAL A 186 ? PRO A 184 VAL A 186 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A GLU 16 C ? ? ? 1_555 A MSE 17 N ? ? A GLU 16 A MSE 17 1_555 ? ? ? ? ? ? ? 1.329 ? covale2 covale ? ? A MSE 17 C ? ? ? 1_555 A GLU 18 N ? ? A MSE 17 A GLU 18 1_555 ? ? ? ? ? ? ? 1.331 ? covale3 covale ? ? A VAL 25 C ? ? ? 1_555 A MSE 26 N ? ? A VAL 25 A MSE 26 1_555 ? ? ? ? ? ? ? 1.330 ? covale4 covale ? ? A MSE 26 C ? ? ? 1_555 A ARG 27 N ? ? A MSE 26 A ARG 27 1_555 ? ? ? ? ? ? ? 1.331 ? covale5 covale ? ? A LYS 132 C ? ? ? 1_555 A MSE 133 N ? ? A LYS 132 A MSE 133 1_555 ? ? ? ? ? ? ? 1.326 ? covale6 covale ? ? A MSE 133 C ? ? ? 1_555 A MSE 134 N ? ? A MSE 133 A MSE 134 1_555 ? ? ? ? ? ? ? 1.326 ? covale7 covale ? ? A MSE 134 C ? ? ? 1_555 A ASN 135 N ? ? A MSE 134 A ASN 135 1_555 ? ? ? ? ? ? ? 1.330 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 2 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 56 ? SER A 57 ? ALA A 56 SER A 57 A 2 LYS A 32 ? GLY A 37 ? LYS A 32 GLY A 37 A 3 ARG A 5 ? LEU A 10 ? ARG A 5 LEU A 10 A 4 VAL A 69 ? LEU A 72 ? VAL A 69 LEU A 72 A 5 LEU A 101 ? ILE A 105 ? LEU A 101 ILE A 105 A 6 ILE A 152 ? SER A 155 ? ILE A 152 SER A 155 A 7 VAL A 146 ? ASP A 149 ? VAL A 146 ASP A 149 B 1 VAL A 44 ? GLN A 45 ? VAL A 44 GLN A 45 B 2 VAL A 51 ? ILE A 52 ? VAL A 51 ILE A 52 C 1 LYS A 122 ? VAL A 123 ? LYS A 122 VAL A 123 C 2 THR A 140 ? TYR A 141 ? THR A 140 TYR A 141 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ALA A 56 ? O ALA A 56 N GLY A 37 ? N GLY A 37 A 2 3 O ALA A 36 ? O ALA A 36 N LEU A 10 ? N LEU A 10 A 3 4 N LEU A 7 ? N LEU A 7 O VAL A 71 ? O VAL A 71 A 4 5 N LEU A 72 ? N LEU A 72 O ALA A 103 ? O ALA A 103 A 5 6 N ILE A 102 ? N ILE A 102 O LEU A 153 ? O LEU A 153 A 6 7 O THR A 154 ? O THR A 154 N GLU A 147 ? N GLU A 147 B 1 2 N VAL A 44 ? N VAL A 44 O ILE A 52 ? O ILE A 52 C 1 2 N VAL A 123 ? N VAL A 123 O THR A 140 ? O THR A 140 # _database_PDB_matrix.entry_id 1PDV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1PDV _atom_sites.fract_transf_matrix[1][1] 0.013217 _atom_sites.fract_transf_matrix[1][2] 0.007631 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015262 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013247 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 ALA 2 2 2 ALA ALA A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 LYS 4 4 4 LYS LYS A . n A 1 5 ARG 5 5 5 ARG ARG A . n A 1 6 ALA 6 6 6 ALA ALA A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 MSE 17 17 17 MSE MSE A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 THR 19 19 19 THR THR A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 ILE 21 21 21 ILE ILE A . n A 1 22 PRO 22 22 22 PRO PRO A . n A 1 23 VAL 23 23 23 VAL VAL A . n A 1 24 ASP 24 24 24 ASP ASP A . n A 1 25 VAL 25 25 25 VAL VAL A . n A 1 26 MSE 26 26 26 MSE MSE A . n A 1 27 ARG 27 27 27 ARG ARG A . n A 1 28 ARG 28 28 28 ARG ARG A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 ILE 31 31 31 ILE ILE A . n A 1 32 LYS 32 32 32 LYS LYS A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 THR 34 34 34 THR THR A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 ASP 42 42 42 ASP ASP A . n A 1 43 PRO 43 43 43 PRO PRO A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 GLN 45 45 45 GLN GLN A . n A 1 46 CYS 46 46 46 CYS CYS A . n A 1 47 SER 47 47 47 SER SER A . n A 1 48 ARG 48 48 48 ARG ARG A . n A 1 49 ASP 49 49 49 ASP ASP A . n A 1 50 VAL 50 50 50 VAL VAL A . n A 1 51 VAL 51 51 51 VAL VAL A . n A 1 52 ILE 52 52 52 ILE ILE A . n A 1 53 CYS 53 53 53 CYS CYS A . n A 1 54 PRO 54 54 54 PRO PRO A . n A 1 55 ASP 55 55 55 ASP ASP A . n A 1 56 ALA 56 56 56 ALA ALA A . n A 1 57 SER 57 57 57 SER SER A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 GLU 59 59 59 GLU GLU A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 ALA 61 61 61 ALA ALA A . n A 1 62 LYS 62 62 62 LYS LYS A . n A 1 63 LYS 63 63 63 LYS LYS A . n A 1 64 GLU 64 64 64 GLU GLU A . n A 1 65 GLY 65 65 65 GLY GLY A . n A 1 66 PRO 66 66 66 PRO PRO A . n A 1 67 TYR 67 67 67 TYR TYR A . n A 1 68 ASP 68 68 68 ASP ASP A . n A 1 69 VAL 69 69 69 VAL VAL A . n A 1 70 VAL 70 70 70 VAL VAL A . n A 1 71 VAL 71 71 71 VAL VAL A . n A 1 72 LEU 72 72 72 LEU LEU A . n A 1 73 PRO 73 73 73 PRO PRO A . n A 1 74 GLY 74 74 74 GLY GLY A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 ASN 76 76 76 ASN ASN A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 ALA 79 79 79 ALA ALA A . n A 1 80 GLN 80 80 80 GLN GLN A . n A 1 81 ASN 81 81 81 ASN ASN A . n A 1 82 LEU 82 82 82 LEU LEU A . n A 1 83 SER 83 83 83 SER SER A . n A 1 84 GLU 84 84 84 GLU GLU A . n A 1 85 SER 85 85 85 SER SER A . n A 1 86 ALA 86 86 86 ALA ALA A . n A 1 87 ALA 87 87 87 ALA ALA A . n A 1 88 VAL 88 88 88 VAL VAL A . n A 1 89 LYS 89 89 89 LYS LYS A . n A 1 90 GLU 90 90 90 GLU GLU A . n A 1 91 ILE 91 91 91 ILE ILE A . n A 1 92 LEU 92 92 92 LEU LEU A . n A 1 93 LYS 93 93 93 LYS LYS A . n A 1 94 GLU 94 94 94 GLU GLU A . n A 1 95 GLN 95 95 95 GLN GLN A . n A 1 96 GLU 96 96 96 GLU GLU A . n A 1 97 ASN 97 97 97 ASN ASN A . n A 1 98 ARG 98 98 98 ARG ARG A . n A 1 99 LYS 99 99 99 LYS LYS A . n A 1 100 GLY 100 100 100 GLY GLY A . n A 1 101 LEU 101 101 101 LEU LEU A . n A 1 102 ILE 102 102 102 ILE ILE A . n A 1 103 ALA 103 103 103 ALA ALA A . n A 1 104 ALA 104 104 104 ALA ALA A . n A 1 105 ILE 105 105 105 ILE ILE A . n A 1 106 CYS 106 106 106 CYS CYS A . n A 1 107 ALA 107 107 107 ALA ALA A . n A 1 108 GLY 108 108 108 GLY GLY A . n A 1 109 PRO 109 109 109 PRO PRO A . n A 1 110 THR 110 110 110 THR THR A . n A 1 111 ALA 111 111 111 ALA ALA A . n A 1 112 LEU 112 112 112 LEU LEU A . n A 1 113 LEU 113 113 113 LEU LEU A . n A 1 114 ALA 114 114 114 ALA ALA A . n A 1 115 HIS 115 115 115 HIS HIS A . n A 1 116 GLU 116 116 116 GLU GLU A . n A 1 117 ILE 117 117 117 ILE ILE A . n A 1 118 GLY 118 118 118 GLY GLY A . n A 1 119 PHE 119 119 119 PHE PHE A . n A 1 120 GLY 120 120 120 GLY GLY A . n A 1 121 SER 121 121 121 SER SER A . n A 1 122 LYS 122 122 122 LYS LYS A . n A 1 123 VAL 123 123 123 VAL VAL A . n A 1 124 THR 124 124 124 THR THR A . n A 1 125 THR 125 125 125 THR THR A . n A 1 126 HIS 126 126 126 HIS HIS A . n A 1 127 PRO 127 127 127 PRO PRO A . n A 1 128 LEU 128 128 128 LEU LEU A . n A 1 129 ALA 129 129 129 ALA ALA A . n A 1 130 LYS 130 130 130 LYS LYS A . n A 1 131 ASP 131 131 131 ASP ASP A . n A 1 132 LYS 132 132 132 LYS LYS A . n A 1 133 MSE 133 133 133 MSE MSE A . n A 1 134 MSE 134 134 134 MSE MSE A . n A 1 135 ASN 135 135 135 ASN ASN A . n A 1 136 GLY 136 136 136 GLY GLY A . n A 1 137 GLY 137 137 137 GLY GLY A . n A 1 138 HIS 138 138 138 HIS HIS A . n A 1 139 TYR 139 139 139 TYR TYR A . n A 1 140 THR 140 140 140 THR THR A . n A 1 141 TYR 141 141 141 TYR TYR A . n A 1 142 SER 142 142 142 SER SER A . n A 1 143 GLU 143 143 143 GLU GLU A . n A 1 144 ASN 144 144 144 ASN ASN A . n A 1 145 ARG 145 145 145 ARG ARG A . n A 1 146 VAL 146 146 146 VAL VAL A . n A 1 147 GLU 147 147 147 GLU GLU A . n A 1 148 LYS 148 148 148 LYS LYS A . n A 1 149 ASP 149 149 149 ASP ASP A . n A 1 150 GLY 150 150 150 GLY GLY A . n A 1 151 LEU 151 151 151 LEU LEU A . n A 1 152 ILE 152 152 152 ILE ILE A . n A 1 153 LEU 153 153 153 LEU LEU A . n A 1 154 THR 154 154 154 THR THR A . n A 1 155 SER 155 155 155 SER SER A . n A 1 156 ARG 156 156 156 ARG ARG A . n A 1 157 GLY 157 157 157 GLY GLY A . n A 1 158 PRO 158 158 158 PRO PRO A . n A 1 159 GLY 159 159 159 GLY GLY A . n A 1 160 THR 160 160 160 THR THR A . n A 1 161 SER 161 161 161 SER SER A . n A 1 162 PHE 162 162 162 PHE PHE A . n A 1 163 GLU 163 163 163 GLU GLU A . n A 1 164 PHE 164 164 164 PHE PHE A . n A 1 165 ALA 165 165 165 ALA ALA A . n A 1 166 LEU 166 166 166 LEU LEU A . n A 1 167 ALA 167 167 167 ALA ALA A . n A 1 168 ILE 168 168 168 ILE ILE A . n A 1 169 VAL 169 169 169 VAL VAL A . n A 1 170 GLU 170 170 170 GLU GLU A . n A 1 171 ALA 171 171 171 ALA ALA A . n A 1 172 LEU 172 172 172 LEU LEU A . n A 1 173 ASN 173 173 173 ASN ASN A . n A 1 174 GLY 174 174 174 GLY GLY A . n A 1 175 LYS 175 175 175 LYS LYS A . n A 1 176 GLU 176 176 176 GLU GLU A . n A 1 177 VAL 177 177 177 VAL VAL A . n A 1 178 ALA 178 178 178 ALA ALA A . n A 1 179 ALA 179 179 179 ALA ALA A . n A 1 180 GLN 180 180 180 GLN GLN A . n A 1 181 VAL 181 181 181 VAL VAL A . n A 1 182 LYS 182 182 182 LYS LYS A . n A 1 183 ALA 183 183 183 ALA ALA A . n A 1 184 PRO 184 184 184 PRO PRO A . n A 1 185 LEU 185 185 185 LEU LEU A . n A 1 186 VAL 186 186 186 VAL VAL A . n A 1 187 LEU 187 187 187 LEU LEU A . n A 1 188 LYS 188 188 188 LYS LYS A . n A 1 189 ASP 189 189 ? ? ? A . n A 1 190 LEU 190 190 ? ? ? A . n A 1 191 GLU 191 191 ? ? ? A . n A 1 192 HIS 192 192 ? ? ? A . n A 1 193 HIS 193 193 ? ? ? A . n A 1 194 HIS 194 194 ? ? ? A . n A 1 195 HIS 195 195 ? ? ? A . n A 1 196 HIS 196 196 ? ? ? A . n A 1 197 HIS 197 197 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 1001 1001 HOH HOH A . B 2 HOH 2 1002 1002 HOH HOH A . B 2 HOH 3 1003 1003 HOH HOH A . B 2 HOH 4 1004 1004 HOH HOH A . B 2 HOH 5 1005 1005 HOH HOH A . B 2 HOH 6 1006 1006 HOH HOH A . B 2 HOH 7 1008 1008 HOH HOH A . B 2 HOH 8 1009 1009 HOH HOH A . B 2 HOH 9 1010 1010 HOH HOH A . B 2 HOH 10 1011 1011 HOH HOH A . B 2 HOH 11 1012 1012 HOH HOH A . B 2 HOH 12 1013 1013 HOH HOH A . B 2 HOH 13 1014 1014 HOH HOH A . B 2 HOH 14 1015 1015 HOH HOH A . B 2 HOH 15 1016 1016 HOH HOH A . B 2 HOH 16 1017 1017 HOH HOH A . B 2 HOH 17 1018 1018 HOH HOH A . B 2 HOH 18 1019 1019 HOH HOH A . B 2 HOH 19 1020 1020 HOH HOH A . B 2 HOH 20 1021 1021 HOH HOH A . B 2 HOH 21 1022 1022 HOH HOH A . B 2 HOH 22 1023 1023 HOH HOH A . B 2 HOH 23 1024 1024 HOH HOH A . B 2 HOH 24 1025 1025 HOH HOH A . B 2 HOH 25 1026 1026 HOH HOH A . B 2 HOH 26 1027 1027 HOH HOH A . B 2 HOH 27 1028 1028 HOH HOH A . B 2 HOH 28 1029 1029 HOH HOH A . B 2 HOH 29 1030 1030 HOH HOH A . B 2 HOH 30 1031 1031 HOH HOH A . B 2 HOH 31 1032 1032 HOH HOH A . B 2 HOH 32 1033 1033 HOH HOH A . B 2 HOH 33 1034 1034 HOH HOH A . B 2 HOH 34 1035 1035 HOH HOH A . B 2 HOH 35 1036 1036 HOH HOH A . B 2 HOH 36 1037 1037 HOH HOH A . B 2 HOH 37 1038 1038 HOH HOH A . B 2 HOH 38 1039 1039 HOH HOH A . B 2 HOH 39 1040 1040 HOH HOH A . B 2 HOH 40 1041 1041 HOH HOH A . B 2 HOH 41 1042 1042 HOH HOH A . B 2 HOH 42 1043 1043 HOH HOH A . B 2 HOH 43 1044 1044 HOH HOH A . B 2 HOH 44 1046 1046 HOH HOH A . B 2 HOH 45 1047 1047 HOH HOH A . B 2 HOH 46 1048 1048 HOH HOH A . B 2 HOH 47 1049 1049 HOH HOH A . B 2 HOH 48 1050 1050 HOH HOH A . B 2 HOH 49 1051 1051 HOH HOH A . B 2 HOH 50 1052 1052 HOH HOH A . B 2 HOH 51 1053 1053 HOH HOH A . B 2 HOH 52 1054 1054 HOH HOH A . B 2 HOH 53 1055 1055 HOH HOH A . B 2 HOH 54 1056 1056 HOH HOH A . B 2 HOH 55 1057 1057 HOH HOH A . B 2 HOH 56 1058 1058 HOH HOH A . B 2 HOH 57 1059 1059 HOH HOH A . B 2 HOH 58 1060 1060 HOH HOH A . B 2 HOH 59 1061 1061 HOH HOH A . B 2 HOH 60 1062 1062 HOH HOH A . B 2 HOH 61 1063 1063 HOH HOH A . B 2 HOH 62 1064 1064 HOH HOH A . B 2 HOH 63 1065 1065 HOH HOH A . B 2 HOH 64 1066 1066 HOH HOH A . B 2 HOH 65 1067 1067 HOH HOH A . B 2 HOH 66 1068 1068 HOH HOH A . B 2 HOH 67 1069 1069 HOH HOH A . B 2 HOH 68 1070 1070 HOH HOH A . B 2 HOH 69 1071 1071 HOH HOH A . B 2 HOH 70 1072 1072 HOH HOH A . B 2 HOH 71 1073 1073 HOH HOH A . B 2 HOH 72 1074 1074 HOH HOH A . B 2 HOH 73 1075 1075 HOH HOH A . B 2 HOH 74 1076 1076 HOH HOH A . B 2 HOH 75 1077 1077 HOH HOH A . B 2 HOH 76 1078 1078 HOH HOH A . B 2 HOH 77 1079 1079 HOH HOH A . B 2 HOH 78 1080 1080 HOH HOH A . B 2 HOH 79 1082 1082 HOH HOH A . B 2 HOH 80 1083 1083 HOH HOH A . B 2 HOH 81 1084 1084 HOH HOH A . B 2 HOH 82 1085 1085 HOH HOH A . B 2 HOH 83 1086 1086 HOH HOH A . B 2 HOH 84 1087 1087 HOH HOH A . B 2 HOH 85 1088 1088 HOH HOH A . B 2 HOH 86 1089 1089 HOH HOH A . B 2 HOH 87 1090 1090 HOH HOH A . B 2 HOH 88 1091 1091 HOH HOH A . B 2 HOH 89 1092 1092 HOH HOH A . B 2 HOH 90 1093 1093 HOH HOH A . B 2 HOH 91 1094 1094 HOH HOH A . B 2 HOH 92 1095 1095 HOH HOH A . B 2 HOH 93 1096 1096 HOH HOH A . B 2 HOH 94 1097 1097 HOH HOH A . B 2 HOH 95 1098 1098 HOH HOH A . B 2 HOH 96 1099 1099 HOH HOH A . B 2 HOH 97 1100 1100 HOH HOH A . B 2 HOH 98 1101 1101 HOH HOH A . B 2 HOH 99 1102 1102 HOH HOH A . B 2 HOH 100 1103 1103 HOH HOH A . B 2 HOH 101 1104 1104 HOH HOH A . B 2 HOH 102 1105 1105 HOH HOH A . B 2 HOH 103 1106 1106 HOH HOH A . B 2 HOH 104 1107 1107 HOH HOH A . B 2 HOH 105 1108 1108 HOH HOH A . B 2 HOH 106 1109 1109 HOH HOH A . B 2 HOH 107 1110 1110 HOH HOH A . B 2 HOH 108 1111 1111 HOH HOH A . B 2 HOH 109 1112 1112 HOH HOH A . B 2 HOH 110 1113 1113 HOH HOH A . B 2 HOH 111 1114 1114 HOH HOH A . B 2 HOH 112 1115 1115 HOH HOH A . B 2 HOH 113 1116 1116 HOH HOH A . B 2 HOH 114 1117 1117 HOH HOH A . B 2 HOH 115 1118 1118 HOH HOH A . B 2 HOH 116 1119 1119 HOH HOH A . B 2 HOH 117 1120 1120 HOH HOH A . B 2 HOH 118 1121 1121 HOH HOH A . B 2 HOH 119 1122 1122 HOH HOH A . B 2 HOH 120 1123 1123 HOH HOH A . B 2 HOH 121 1124 1124 HOH HOH A . B 2 HOH 122 1125 1125 HOH HOH A . B 2 HOH 123 1126 1126 HOH HOH A . B 2 HOH 124 1127 1127 HOH HOH A . B 2 HOH 125 1128 1128 HOH HOH A . B 2 HOH 126 1129 1129 HOH HOH A . B 2 HOH 127 1130 1130 HOH HOH A . B 2 HOH 128 1131 1131 HOH HOH A . B 2 HOH 129 1132 1132 HOH HOH A . B 2 HOH 130 1133 1133 HOH HOH A . B 2 HOH 131 1134 1134 HOH HOH A . B 2 HOH 132 1135 1135 HOH HOH A . B 2 HOH 133 1136 1136 HOH HOH A . B 2 HOH 134 1137 1137 HOH HOH A . B 2 HOH 135 1138 1138 HOH HOH A . B 2 HOH 136 1139 1139 HOH HOH A . B 2 HOH 137 1140 1140 HOH HOH A . B 2 HOH 138 1141 1141 HOH HOH A . B 2 HOH 139 1142 1142 HOH HOH A . B 2 HOH 140 1143 1143 HOH HOH A . B 2 HOH 141 1144 1144 HOH HOH A . B 2 HOH 142 1145 1145 HOH HOH A . B 2 HOH 143 1146 1146 HOH HOH A . B 2 HOH 144 1147 1147 HOH HOH A . B 2 HOH 145 1148 1148 HOH HOH A . B 2 HOH 146 1149 1149 HOH HOH A . B 2 HOH 147 1150 1150 HOH HOH A . B 2 HOH 148 1151 1151 HOH HOH A . B 2 HOH 149 1152 1152 HOH HOH A . B 2 HOH 150 1153 1153 HOH HOH A . B 2 HOH 151 1154 1154 HOH HOH A . B 2 HOH 152 1155 1155 HOH HOH A . B 2 HOH 153 1156 1156 HOH HOH A . B 2 HOH 154 1157 1157 HOH HOH A . B 2 HOH 155 1158 1158 HOH HOH A . B 2 HOH 156 1159 1159 HOH HOH A . B 2 HOH 157 1160 1160 HOH HOH A . B 2 HOH 158 1161 1161 HOH HOH A . B 2 HOH 159 1162 1162 HOH HOH A . B 2 HOH 160 1163 1163 HOH HOH A . B 2 HOH 161 1164 1164 HOH HOH A . B 2 HOH 162 1165 1165 HOH HOH A . B 2 HOH 163 1166 1166 HOH HOH A . B 2 HOH 164 1167 1167 HOH HOH A . B 2 HOH 165 1168 1168 HOH HOH A . B 2 HOH 166 1169 1169 HOH HOH A . B 2 HOH 167 1170 1170 HOH HOH A . B 2 HOH 168 1171 1171 HOH HOH A . B 2 HOH 169 1172 1172 HOH HOH A . B 2 HOH 170 1173 1173 HOH HOH A . B 2 HOH 171 1174 1174 HOH HOH A . B 2 HOH 172 1175 1175 HOH HOH A . B 2 HOH 173 1176 1176 HOH HOH A . B 2 HOH 174 1177 1177 HOH HOH A . B 2 HOH 175 1178 1178 HOH HOH A . B 2 HOH 176 1179 1179 HOH HOH A . B 2 HOH 177 1180 1180 HOH HOH A . B 2 HOH 178 1181 1181 HOH HOH A . B 2 HOH 179 1182 1182 HOH HOH A . B 2 HOH 180 1183 1183 HOH HOH A . B 2 HOH 181 1184 1184 HOH HOH A . B 2 HOH 182 1185 1185 HOH HOH A . B 2 HOH 183 1186 1186 HOH HOH A . B 2 HOH 184 1189 1189 HOH HOH A . B 2 HOH 185 1192 1192 HOH HOH A . B 2 HOH 186 1193 1193 HOH HOH A . B 2 HOH 187 1194 1194 HOH HOH A . B 2 HOH 188 1195 1195 HOH HOH A . B 2 HOH 189 1196 1196 HOH HOH A . B 2 HOH 190 1197 1197 HOH HOH A . B 2 HOH 191 1198 1198 HOH HOH A . B 2 HOH 192 1199 1199 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 17 A MSE 17 ? MET SELENOMETHIONINE 2 A MSE 26 A MSE 26 ? MET SELENOMETHIONINE 3 A MSE 133 A MSE 133 ? MET SELENOMETHIONINE 4 A MSE 134 A MSE 134 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2620 ? 1 MORE -19 ? 1 'SSA (A^2)' 14780 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 25.1626666667 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-06-24 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SOLVE phasing . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 64 ? ? -94.35 55.19 2 1 CYS A 106 ? ? 66.42 -114.15 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A ASP 189 ? A ASP 189 3 1 Y 1 A LEU 190 ? A LEU 190 4 1 Y 1 A GLU 191 ? A GLU 191 5 1 Y 1 A HIS 192 ? A HIS 192 6 1 Y 1 A HIS 193 ? A HIS 193 7 1 Y 1 A HIS 194 ? A HIS 194 8 1 Y 1 A HIS 195 ? A HIS 195 9 1 Y 1 A HIS 196 ? A HIS 196 10 1 Y 1 A HIS 197 ? A HIS 197 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #