data_1PUY # _entry.id 1PUY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1PUY pdb_00001puy 10.2210/pdb1puy/pdb NDB DD0058 ? ? RCSB RCSB019589 ? ? WWPDB D_1000019589 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-10-14 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.value' 6 4 'Structure model' '_struct_conn.conn_type_id' 7 4 'Structure model' '_struct_conn.id' 8 4 'Structure model' '_struct_conn.pdbx_dist_value' 9 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 10 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 11 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 12 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 13 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 14 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 15 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 16 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 17 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 18 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 19 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 20 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 21 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 22 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 23 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 24 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 25 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 26 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1PUY _pdbx_database_status.recvd_initial_deposition_date 2003-06-25 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1CS7 _pdbx_database_related.details ;3.2 A resolution structure with four molecules in asymmetric unit ; _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Egli, M.' 1 'Tereshko, V.' 2 'Murshudov, G.' 3 'Sanishvili, R.' 4 'Liu, X.' 5 'Lewis, F.D.' 6 # _citation.id primary _citation.title 'Face-to-face and edge-to-face pi-pi interactions in a synthetic DNA hairpin with a stilbenediether linker' _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 125 _citation.page_first 10842 _citation.page_last 10849 _citation.year 2003 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12952463 _citation.pdbx_database_id_DOI 10.1021/ja0355527 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Egli, M.' 1 ? primary 'Tereshko, V.' 2 ? primary 'Mushudov, G.N.' 3 ? primary 'Sanishvili, R.' 4 ? primary 'Liu, X.' 5 ? primary 'Lewis, F.D.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*GP*TP*TP*TP*TP*GP*(S02)P*CP*AP*AP*AP*AP*C)-3'" 4033.808 2 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 5 ? ? ? ? 3 water nat water 18.015 170 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DG)(DT)(DT)(DT)(DT)(DG)(S02)(DC)(DA)(DA)(DA)(DA)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GTTTTGXCAAAAC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DT n 1 3 DT n 1 4 DT n 1 5 DT n 1 6 DG n 1 7 S02 n 1 8 DC n 1 9 DA n 1 10 DA n 1 11 DA n 1 12 DA n 1 13 DC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'synthetic construct' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 S02 non-polymer . 'PHOSPHORIC ACID MONO-[2-(4-{2-[4-(2-HYDROXY-ETHOXY)-CYCLOHEXYLIDENE]-ETHYLIDENE}-CYCLOHEXYLOXY) -ETHYL] ESTER' 'STILBENEDIETHER NUCLEOTIDE LINKER' 'C18 H31 O7 P' 390.408 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 DT 2 2 2 DT T A . n A 1 3 DT 3 3 3 DT T A . n A 1 4 DT 4 4 4 DT T A . n A 1 5 DT 5 5 5 DT T A . n A 1 6 DG 6 6 6 DG G A . n A 1 7 S02 7 7 7 S02 S02 A . n A 1 8 DC 8 9 9 DC C A . n A 1 9 DA 9 10 10 DA A A . n A 1 10 DA 10 11 11 DA A A . n A 1 11 DA 11 12 12 DA A A . n A 1 12 DA 12 13 13 DA A A . n A 1 13 DC 13 14 14 DC C A . n B 1 1 DG 1 1 1 DG G B . n B 1 2 DT 2 2 2 DT T B . n B 1 3 DT 3 3 3 DT T B . n B 1 4 DT 4 4 4 DT T B . n B 1 5 DT 5 5 5 DT T B . n B 1 6 DG 6 6 6 DG G B . n B 1 7 S02 7 7 7 S02 S02 B . n B 1 8 DC 8 9 9 DC C B . n B 1 9 DA 9 10 10 DA A B . n B 1 10 DA 10 11 11 DA A B . n B 1 11 DA 11 12 12 DA A B . n B 1 12 DA 12 13 13 DA A B . n B 1 13 DC 13 14 14 DC C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 201 201 MG MG A . D 2 MG 1 301 301 MG MG A . E 2 MG 1 308 308 MG MG A . F 2 MG 1 208 208 MG MG B . G 2 MG 1 315 315 MG MG B . H 3 HOH 1 202 202 HOH HOH A . H 3 HOH 2 203 203 HOH HOH A . H 3 HOH 3 204 204 HOH HOH A . H 3 HOH 4 205 205 HOH HOH A . H 3 HOH 5 206 206 HOH HOH A . H 3 HOH 6 207 207 HOH HOH A . H 3 HOH 7 302 302 HOH HOH A . H 3 HOH 8 303 303 HOH HOH A . H 3 HOH 9 304 304 HOH HOH A . H 3 HOH 10 305 305 HOH HOH A . H 3 HOH 11 306 306 HOH HOH A . H 3 HOH 12 307 307 HOH HOH A . H 3 HOH 13 309 309 HOH HOH A . H 3 HOH 14 310 310 HOH HOH A . H 3 HOH 15 311 311 HOH HOH A . H 3 HOH 16 312 312 HOH HOH A . H 3 HOH 17 313 313 HOH HOH A . H 3 HOH 18 314 314 HOH HOH A . H 3 HOH 19 401 401 HOH HOH A . H 3 HOH 20 404 404 HOH HOH A . H 3 HOH 21 405 405 HOH HOH A . H 3 HOH 22 406 406 HOH HOH A . H 3 HOH 23 407 407 HOH HOH A . H 3 HOH 24 410 410 HOH HOH A . H 3 HOH 25 411 411 HOH HOH A . H 3 HOH 26 412 412 HOH HOH A . H 3 HOH 27 413 413 HOH HOH A . H 3 HOH 28 415 415 HOH HOH A . H 3 HOH 29 417 417 HOH HOH A . H 3 HOH 30 418 418 HOH HOH A . H 3 HOH 31 419 419 HOH HOH A . H 3 HOH 32 420 420 HOH HOH A . H 3 HOH 33 422 422 HOH HOH A . H 3 HOH 34 423 423 HOH HOH A . H 3 HOH 35 424 424 HOH HOH A . H 3 HOH 36 425 425 HOH HOH A . H 3 HOH 37 428 428 HOH HOH A . H 3 HOH 38 431 431 HOH HOH A . H 3 HOH 39 432 432 HOH HOH A . H 3 HOH 40 433 433 HOH HOH A . H 3 HOH 41 435 435 HOH HOH A . H 3 HOH 42 436 436 HOH HOH A . H 3 HOH 43 437 437 HOH HOH A . H 3 HOH 44 438 438 HOH HOH A . H 3 HOH 45 442 442 HOH HOH A . H 3 HOH 46 444 444 HOH HOH A . H 3 HOH 47 445 445 HOH HOH A . H 3 HOH 48 447 447 HOH HOH A . H 3 HOH 49 453 453 HOH HOH A . H 3 HOH 50 456 456 HOH HOH A . H 3 HOH 51 457 457 HOH HOH A . H 3 HOH 52 459 459 HOH HOH A . H 3 HOH 53 462 462 HOH HOH A . H 3 HOH 54 463 463 HOH HOH A . H 3 HOH 55 464 464 HOH HOH A . H 3 HOH 56 466 466 HOH HOH A . H 3 HOH 57 467 467 HOH HOH A . H 3 HOH 58 468 468 HOH HOH A . H 3 HOH 59 469 469 HOH HOH A . H 3 HOH 60 470 470 HOH HOH A . H 3 HOH 61 472 472 HOH HOH A . H 3 HOH 62 475 475 HOH HOH A . H 3 HOH 63 476 476 HOH HOH A . H 3 HOH 64 477 477 HOH HOH A . H 3 HOH 65 478 478 HOH HOH A . H 3 HOH 66 480 480 HOH HOH A . H 3 HOH 67 481 481 HOH HOH A . H 3 HOH 68 484 484 HOH HOH A . H 3 HOH 69 485 485 HOH HOH A . H 3 HOH 70 486 486 HOH HOH A . H 3 HOH 71 487 487 HOH HOH A . H 3 HOH 72 488 488 HOH HOH A . H 3 HOH 73 492 492 HOH HOH A . H 3 HOH 74 494 494 HOH HOH A . H 3 HOH 75 495 495 HOH HOH A . H 3 HOH 76 497 497 HOH HOH A . H 3 HOH 77 498 498 HOH HOH A . H 3 HOH 78 499 499 HOH HOH A . H 3 HOH 79 503 503 HOH HOH A . H 3 HOH 80 504 504 HOH HOH A . H 3 HOH 81 506 506 HOH HOH A . H 3 HOH 82 509 509 HOH HOH A . H 3 HOH 83 511 511 HOH HOH A . H 3 HOH 84 512 512 HOH HOH A . H 3 HOH 85 513 513 HOH HOH A . H 3 HOH 86 516 516 HOH HOH A . H 3 HOH 87 518 518 HOH HOH A . H 3 HOH 88 523 523 HOH HOH A . H 3 HOH 89 527 527 HOH HOH A . H 3 HOH 90 528 528 HOH HOH A . H 3 HOH 91 529 529 HOH HOH A . H 3 HOH 92 530 530 HOH HOH A . H 3 HOH 93 531 531 HOH HOH A . H 3 HOH 94 532 532 HOH HOH A . H 3 HOH 95 533 533 HOH HOH A . H 3 HOH 96 534 534 HOH HOH A . H 3 HOH 97 537 537 HOH HOH A . I 3 HOH 1 209 209 HOH HOH B . I 3 HOH 2 210 210 HOH HOH B . I 3 HOH 3 211 211 HOH HOH B . I 3 HOH 4 212 212 HOH HOH B . I 3 HOH 5 213 213 HOH HOH B . I 3 HOH 6 214 214 HOH HOH B . I 3 HOH 7 316 316 HOH HOH B . I 3 HOH 8 317 317 HOH HOH B . I 3 HOH 9 318 318 HOH HOH B . I 3 HOH 10 319 319 HOH HOH B . I 3 HOH 11 320 320 HOH HOH B . I 3 HOH 12 321 321 HOH HOH B . I 3 HOH 13 402 402 HOH HOH B . I 3 HOH 14 403 403 HOH HOH B . I 3 HOH 15 408 408 HOH HOH B . I 3 HOH 16 409 409 HOH HOH B . I 3 HOH 17 414 414 HOH HOH B . I 3 HOH 18 416 416 HOH HOH B . I 3 HOH 19 421 421 HOH HOH B . I 3 HOH 20 426 426 HOH HOH B . I 3 HOH 21 427 427 HOH HOH B . I 3 HOH 22 429 429 HOH HOH B . I 3 HOH 23 430 430 HOH HOH B . I 3 HOH 24 434 434 HOH HOH B . I 3 HOH 25 439 439 HOH HOH B . I 3 HOH 26 440 440 HOH HOH B . I 3 HOH 27 441 441 HOH HOH B . I 3 HOH 28 443 443 HOH HOH B . I 3 HOH 29 446 446 HOH HOH B . I 3 HOH 30 448 448 HOH HOH B . I 3 HOH 31 449 449 HOH HOH B . I 3 HOH 32 450 450 HOH HOH B . I 3 HOH 33 451 451 HOH HOH B . I 3 HOH 34 452 452 HOH HOH B . I 3 HOH 35 454 454 HOH HOH B . I 3 HOH 36 455 455 HOH HOH B . I 3 HOH 37 458 458 HOH HOH B . I 3 HOH 38 460 460 HOH HOH B . I 3 HOH 39 461 461 HOH HOH B . I 3 HOH 40 465 465 HOH HOH B . I 3 HOH 41 471 471 HOH HOH B . I 3 HOH 42 473 473 HOH HOH B . I 3 HOH 43 474 474 HOH HOH B . I 3 HOH 44 479 479 HOH HOH B . I 3 HOH 45 482 482 HOH HOH B . I 3 HOH 46 483 483 HOH HOH B . I 3 HOH 47 490 490 HOH HOH B . I 3 HOH 48 491 491 HOH HOH B . I 3 HOH 49 493 493 HOH HOH B . I 3 HOH 50 496 496 HOH HOH B . I 3 HOH 51 500 500 HOH HOH B . I 3 HOH 52 501 501 HOH HOH B . I 3 HOH 53 502 502 HOH HOH B . I 3 HOH 54 505 505 HOH HOH B . I 3 HOH 55 507 507 HOH HOH B . I 3 HOH 56 508 508 HOH HOH B . I 3 HOH 57 510 510 HOH HOH B . I 3 HOH 58 514 514 HOH HOH B . I 3 HOH 59 515 515 HOH HOH B . I 3 HOH 60 517 517 HOH HOH B . I 3 HOH 61 519 519 HOH HOH B . I 3 HOH 62 520 520 HOH HOH B . I 3 HOH 63 521 521 HOH HOH B . I 3 HOH 64 522 522 HOH HOH B . I 3 HOH 65 524 524 HOH HOH B . I 3 HOH 66 525 525 HOH HOH B . I 3 HOH 67 526 526 HOH HOH B . I 3 HOH 68 535 535 HOH HOH B . I 3 HOH 69 536 536 HOH HOH B . I 3 HOH 70 538 538 HOH HOH B . I 3 HOH 71 539 539 HOH HOH B . I 3 HOH 72 540 540 HOH HOH B . I 3 HOH 73 541 541 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.1.13 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 AMoRE phasing . ? 4 # _cell.entry_id 1PUY _cell.length_a 29.890 _cell.length_b 41.860 _cell.length_c 51.100 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PUY _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.entry_id 1PUY _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.92 _exptl_crystal.density_percent_sol 35.95 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.30 _exptl_crystal_grow.pdbx_details 'MPD, magnesium chloride, cacodylate, pH 6.3, VAPOR DIFFUSION, HANGING DROP, temperature 298K, pH 6.30' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MPD ? ? ? 1 2 1 'magnesium chloride' ? ? ? 1 3 1 cacodylate ? ? ? 1 4 1 H2O ? ? ? 1 5 2 MPD ? ? ? 1 6 2 'magnesium chloride' ? ? ? 1 7 2 H2O ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type APS-1 _diffrn_detector.pdbx_collection_date 1999-05-01 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength 1.00 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1PUY _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 14.950 _reflns.d_resolution_high 1.500 _reflns.number_obs 10079 _reflns.number_all ? _reflns.percent_possible_obs 93.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1PUY _refine.ls_number_reflns_obs 9590 _refine.ls_number_reflns_all 9590 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 15.00 _refine.ls_d_res_high 1.50 _refine.ls_percent_reflns_obs 93.9 _refine.ls_R_factor_obs 0.206 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.204 _refine.ls_R_factor_R_free 0.239 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.900 _refine.ls_number_reflns_R_free 489 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.954 _refine.correlation_coeff_Fo_to_Fc_free 0.942 _refine.B_iso_mean 15.01 _refine.aniso_B[1][1] -2.04000 _refine.aniso_B[2][2] 2.69000 _refine.aniso_B[3][3] -0.65000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.150 _refine.pdbx_overall_ESU_R_Free 0.102 _refine.overall_SU_ML 0.052 _refine.overall_SU_B 1.355 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 536 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 170 _refine_hist.number_atoms_total 711 _refine_hist.d_res_high 1.50 _refine_hist.d_res_low 15.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.017 0.020 ? 598 'X-RAY DIFFRACTION' ? r_bond_other_d 0.003 0.020 ? 264 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.987 2.090 ? 892 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.135 2.000 ? 654 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.077 0.200 ? 72 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.018 0.020 ? 284 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.141 0.200 ? 55 'X-RAY DIFFRACTION' ? r_nbd_other 0.267 0.200 ? 328 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other 0.159 0.200 ? 143 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.162 0.200 ? 92 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.101 0.200 ? 8 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.181 0.200 ? 28 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.220 0.200 ? 47 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.232 3.000 ? 598 'X-RAY DIFFRACTION' ? r_scangle_it 2.954 4.500 ? 892 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 1.653 2.000 ? 598 'X-RAY DIFFRACTION' ? r_sphericity_free 2.794 2.000 ? 175 'X-RAY DIFFRACTION' ? r_sphericity_bonded 2.406 2.000 ? 536 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.50 _refine_ls_shell.d_res_low 1.54 _refine_ls_shell.number_reflns_R_work 637 _refine_ls_shell.R_factor_R_work 0.174 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.268 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 30 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 1PUY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1PUY _struct.title '1.5 A resolution structure of a synthetic DNA hairpin with a stilbenediether linker' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1PUY _struct_keywords.pdbx_keywords DNA _struct_keywords.text DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 3 ? I N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1PUY _struct_ref.pdbx_db_accession 1PUY _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1PUY A 1 ? 13 ? 1PUY 1 ? 14 ? 1 14 2 1 1PUY B 1 ? 13 ? 1PUY 1 ? 14 ? 1 14 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,H 2 1 B,F,G,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_biol.id _struct_biol.pdbx_parent_biol_id _struct_biol.details 1 ? ? 2 ? ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 6 "O3'" ? ? ? 1_555 A S02 7 P ? ? A DG 6 A S02 7 1_555 ? ? ? ? ? ? ? 1.578 ? ? covale2 covale one ? A S02 7 "O3'" ? ? ? 1_555 A DC 8 P ? ? A S02 7 A DC 9 1_555 ? ? ? ? ? ? ? 1.616 ? ? covale3 covale both ? B DG 6 "O3'" ? ? ? 1_555 B S02 7 P ? ? B DG 6 B S02 7 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale4 covale one ? B S02 7 "O3'" ? ? ? 1_555 B DC 8 P ? ? B S02 7 B DC 9 1_555 ? ? ? ? ? ? ? 1.603 ? ? metalc1 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 201 A HOH 202 1_555 ? ? ? ? ? ? ? 2.068 ? ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 201 A HOH 203 1_555 ? ? ? ? ? ? ? 2.017 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 201 A HOH 204 1_555 ? ? ? ? ? ? ? 2.150 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 201 A HOH 205 1_555 ? ? ? ? ? ? ? 2.090 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 201 A HOH 206 1_555 ? ? ? ? ? ? ? 2.127 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 201 A HOH 207 1_555 ? ? ? ? ? ? ? 2.089 ? ? metalc7 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 301 A HOH 302 1_555 ? ? ? ? ? ? ? 2.025 ? ? metalc8 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 301 A HOH 303 1_555 ? ? ? ? ? ? ? 2.126 ? ? metalc9 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 301 A HOH 304 1_555 ? ? ? ? ? ? ? 2.154 ? ? metalc10 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 301 A HOH 305 1_555 ? ? ? ? ? ? ? 2.087 ? ? metalc11 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 301 A HOH 306 1_555 ? ? ? ? ? ? ? 2.430 ? ? metalc12 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 301 A HOH 307 1_555 ? ? ? ? ? ? ? 1.910 ? ? metalc13 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 308 A HOH 309 1_555 ? ? ? ? ? ? ? 1.974 ? ? metalc14 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 308 A HOH 310 1_555 ? ? ? ? ? ? ? 2.248 ? ? metalc15 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 308 A HOH 311 1_555 ? ? ? ? ? ? ? 2.073 ? ? metalc16 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 308 A HOH 312 1_555 ? ? ? ? ? ? ? 2.395 ? ? metalc17 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 308 A HOH 313 1_555 ? ? ? ? ? ? ? 2.695 ? ? metalc18 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 308 A HOH 314 1_555 ? ? ? ? ? ? ? 1.932 ? ? metalc19 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 208 B HOH 209 1_555 ? ? ? ? ? ? ? 2.060 ? ? metalc20 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 208 B HOH 210 1_555 ? ? ? ? ? ? ? 2.017 ? ? metalc21 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 208 B HOH 211 1_555 ? ? ? ? ? ? ? 2.019 ? ? metalc22 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 208 B HOH 212 1_555 ? ? ? ? ? ? ? 2.017 ? ? metalc23 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 208 B HOH 213 1_555 ? ? ? ? ? ? ? 2.010 ? ? metalc24 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 208 B HOH 214 1_555 ? ? ? ? ? ? ? 2.087 ? ? metalc25 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 315 B HOH 316 1_555 ? ? ? ? ? ? ? 2.110 ? ? metalc26 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 315 B HOH 317 1_555 ? ? ? ? ? ? ? 2.036 ? ? metalc27 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 315 B HOH 318 1_555 ? ? ? ? ? ? ? 1.969 ? ? metalc28 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 315 B HOH 319 1_555 ? ? ? ? ? ? ? 1.880 ? ? metalc29 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 315 B HOH 320 1_555 ? ? ? ? ? ? ? 2.296 ? ? metalc30 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 315 B HOH 321 1_555 ? ? ? ? ? ? ? 2.079 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 13 N3 ? ? A DG 1 A DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 13 O2 ? ? A DG 1 A DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 13 N4 ? ? A DG 1 A DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 N3 ? ? ? 1_555 A DA 12 N1 ? ? A DT 2 A DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 2 O4 ? ? ? 1_555 A DA 12 N6 ? ? A DT 2 A DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 3 N3 ? ? ? 1_555 A DA 11 N1 ? ? A DT 3 A DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 O4 ? ? ? 1_555 A DA 11 N6 ? ? A DT 3 A DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 4 N3 ? ? ? 1_555 A DA 10 N1 ? ? A DT 4 A DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 4 O4 ? ? ? 1_555 A DA 10 N6 ? ? A DT 4 A DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 5 N3 ? ? ? 1_555 A DA 9 N1 ? ? A DT 5 A DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 5 O4 ? ? ? 1_555 A DA 9 N6 ? ? A DT 5 A DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 6 A DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 6 A DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 6 A DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DG 1 N1 ? ? ? 1_555 B DC 13 N3 ? ? B DG 1 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DG 1 N2 ? ? ? 1_555 B DC 13 O2 ? ? B DG 1 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DG 1 O6 ? ? ? 1_555 B DC 13 N4 ? ? B DG 1 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DT 2 N3 ? ? ? 1_555 B DA 12 N1 ? ? B DT 2 B DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DT 2 O4 ? ? ? 1_555 B DA 12 N6 ? ? B DT 2 B DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DT 3 N3 ? ? ? 1_555 B DA 11 N1 ? ? B DT 3 B DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DT 3 O4 ? ? ? 1_555 B DA 11 N6 ? ? B DT 3 B DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DT 4 N3 ? ? ? 1_555 B DA 10 N1 ? ? B DT 4 B DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DT 4 O4 ? ? ? 1_555 B DA 10 N6 ? ? B DT 4 B DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DT 5 N3 ? ? ? 1_555 B DA 9 N1 ? ? B DT 5 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DT 5 O4 ? ? ? 1_555 B DA 9 N6 ? ? B DT 5 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DG 6 N1 ? ? ? 1_555 B DC 8 N3 ? ? B DG 6 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DG 6 N2 ? ? ? 1_555 B DC 8 O2 ? ? B DG 6 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DG 6 O6 ? ? ? 1_555 B DC 8 N4 ? ? B DG 6 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? H HOH . ? A HOH 202 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? H HOH . ? A HOH 203 ? 1_555 91.9 ? 2 O ? H HOH . ? A HOH 202 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? H HOH . ? A HOH 204 ? 1_555 88.3 ? 3 O ? H HOH . ? A HOH 203 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? H HOH . ? A HOH 204 ? 1_555 98.2 ? 4 O ? H HOH . ? A HOH 202 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? H HOH . ? A HOH 205 ? 1_555 97.3 ? 5 O ? H HOH . ? A HOH 203 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? H HOH . ? A HOH 205 ? 1_555 87.7 ? 6 O ? H HOH . ? A HOH 204 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? H HOH . ? A HOH 205 ? 1_555 171.8 ? 7 O ? H HOH . ? A HOH 202 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? H HOH . ? A HOH 206 ? 1_555 80.6 ? 8 O ? H HOH . ? A HOH 203 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? H HOH . ? A HOH 206 ? 1_555 171.4 ? 9 O ? H HOH . ? A HOH 204 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? H HOH . ? A HOH 206 ? 1_555 86.0 ? 10 O ? H HOH . ? A HOH 205 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? H HOH . ? A HOH 206 ? 1_555 89.0 ? 11 O ? H HOH . ? A HOH 202 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? H HOH . ? A HOH 207 ? 1_555 172.0 ? 12 O ? H HOH . ? A HOH 203 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? H HOH . ? A HOH 207 ? 1_555 92.2 ? 13 O ? H HOH . ? A HOH 204 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? H HOH . ? A HOH 207 ? 1_555 84.3 ? 14 O ? H HOH . ? A HOH 205 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? H HOH . ? A HOH 207 ? 1_555 89.7 ? 15 O ? H HOH . ? A HOH 206 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? H HOH . ? A HOH 207 ? 1_555 95.7 ? 16 O ? H HOH . ? A HOH 302 ? 1_555 MG ? D MG . ? A MG 301 ? 1_555 O ? H HOH . ? A HOH 303 ? 1_555 89.2 ? 17 O ? H HOH . ? A HOH 302 ? 1_555 MG ? D MG . ? A MG 301 ? 1_555 O ? H HOH . ? A HOH 304 ? 1_555 179.0 ? 18 O ? H HOH . ? A HOH 303 ? 1_555 MG ? D MG . ? A MG 301 ? 1_555 O ? H HOH . ? A HOH 304 ? 1_555 89.8 ? 19 O ? H HOH . ? A HOH 302 ? 1_555 MG ? D MG . ? A MG 301 ? 1_555 O ? H HOH . ? A HOH 305 ? 1_555 92.0 ? 20 O ? H HOH . ? A HOH 303 ? 1_555 MG ? D MG . ? A MG 301 ? 1_555 O ? H HOH . ? A HOH 305 ? 1_555 175.6 ? 21 O ? H HOH . ? A HOH 304 ? 1_555 MG ? D MG . ? A MG 301 ? 1_555 O ? H HOH . ? A HOH 305 ? 1_555 88.9 ? 22 O ? H HOH . ? A HOH 302 ? 1_555 MG ? D MG . ? A MG 301 ? 1_555 O ? H HOH . ? A HOH 306 ? 1_555 91.8 ? 23 O ? H HOH . ? A HOH 303 ? 1_555 MG ? D MG . ? A MG 301 ? 1_555 O ? H HOH . ? A HOH 306 ? 1_555 94.2 ? 24 O ? H HOH . ? A HOH 304 ? 1_555 MG ? D MG . ? A MG 301 ? 1_555 O ? H HOH . ? A HOH 306 ? 1_555 88.2 ? 25 O ? H HOH . ? A HOH 305 ? 1_555 MG ? D MG . ? A MG 301 ? 1_555 O ? H HOH . ? A HOH 306 ? 1_555 81.5 ? 26 O ? H HOH . ? A HOH 302 ? 1_555 MG ? D MG . ? A MG 301 ? 1_555 O ? H HOH . ? A HOH 307 ? 1_555 88.3 ? 27 O ? H HOH . ? A HOH 303 ? 1_555 MG ? D MG . ? A MG 301 ? 1_555 O ? H HOH . ? A HOH 307 ? 1_555 89.9 ? 28 O ? H HOH . ? A HOH 304 ? 1_555 MG ? D MG . ? A MG 301 ? 1_555 O ? H HOH . ? A HOH 307 ? 1_555 91.8 ? 29 O ? H HOH . ? A HOH 305 ? 1_555 MG ? D MG . ? A MG 301 ? 1_555 O ? H HOH . ? A HOH 307 ? 1_555 94.3 ? 30 O ? H HOH . ? A HOH 306 ? 1_555 MG ? D MG . ? A MG 301 ? 1_555 O ? H HOH . ? A HOH 307 ? 1_555 175.9 ? 31 O ? H HOH . ? A HOH 309 ? 1_555 MG ? E MG . ? A MG 308 ? 1_555 O ? H HOH . ? A HOH 310 ? 1_555 85.6 ? 32 O ? H HOH . ? A HOH 309 ? 1_555 MG ? E MG . ? A MG 308 ? 1_555 O ? H HOH . ? A HOH 311 ? 1_555 97.0 ? 33 O ? H HOH . ? A HOH 310 ? 1_555 MG ? E MG . ? A MG 308 ? 1_555 O ? H HOH . ? A HOH 311 ? 1_555 100.8 ? 34 O ? H HOH . ? A HOH 309 ? 1_555 MG ? E MG . ? A MG 308 ? 1_555 O ? H HOH . ? A HOH 312 ? 1_555 169.8 ? 35 O ? H HOH . ? A HOH 310 ? 1_555 MG ? E MG . ? A MG 308 ? 1_555 O ? H HOH . ? A HOH 312 ? 1_555 96.0 ? 36 O ? H HOH . ? A HOH 311 ? 1_555 MG ? E MG . ? A MG 308 ? 1_555 O ? H HOH . ? A HOH 312 ? 1_555 92.6 ? 37 O ? H HOH . ? A HOH 309 ? 1_555 MG ? E MG . ? A MG 308 ? 1_555 O ? H HOH . ? A HOH 313 ? 1_555 95.0 ? 38 O ? H HOH . ? A HOH 310 ? 1_555 MG ? E MG . ? A MG 308 ? 1_555 O ? H HOH . ? A HOH 313 ? 1_555 167.4 ? 39 O ? H HOH . ? A HOH 311 ? 1_555 MG ? E MG . ? A MG 308 ? 1_555 O ? H HOH . ? A HOH 313 ? 1_555 91.7 ? 40 O ? H HOH . ? A HOH 312 ? 1_555 MG ? E MG . ? A MG 308 ? 1_555 O ? H HOH . ? A HOH 313 ? 1_555 81.3 ? 41 O ? H HOH . ? A HOH 309 ? 1_555 MG ? E MG . ? A MG 308 ? 1_555 O ? H HOH . ? A HOH 314 ? 1_555 79.4 ? 42 O ? H HOH . ? A HOH 310 ? 1_555 MG ? E MG . ? A MG 308 ? 1_555 O ? H HOH . ? A HOH 314 ? 1_555 79.0 ? 43 O ? H HOH . ? A HOH 311 ? 1_555 MG ? E MG . ? A MG 308 ? 1_555 O ? H HOH . ? A HOH 314 ? 1_555 176.3 ? 44 O ? H HOH . ? A HOH 312 ? 1_555 MG ? E MG . ? A MG 308 ? 1_555 O ? H HOH . ? A HOH 314 ? 1_555 91.1 ? 45 O ? H HOH . ? A HOH 313 ? 1_555 MG ? E MG . ? A MG 308 ? 1_555 O ? H HOH . ? A HOH 314 ? 1_555 88.7 ? 46 O ? I HOH . ? B HOH 209 ? 1_555 MG ? F MG . ? B MG 208 ? 1_555 O ? I HOH . ? B HOH 210 ? 1_555 90.4 ? 47 O ? I HOH . ? B HOH 209 ? 1_555 MG ? F MG . ? B MG 208 ? 1_555 O ? I HOH . ? B HOH 211 ? 1_555 171.6 ? 48 O ? I HOH . ? B HOH 210 ? 1_555 MG ? F MG . ? B MG 208 ? 1_555 O ? I HOH . ? B HOH 211 ? 1_555 91.9 ? 49 O ? I HOH . ? B HOH 209 ? 1_555 MG ? F MG . ? B MG 208 ? 1_555 O ? I HOH . ? B HOH 212 ? 1_555 91.9 ? 50 O ? I HOH . ? B HOH 210 ? 1_555 MG ? F MG . ? B MG 208 ? 1_555 O ? I HOH . ? B HOH 212 ? 1_555 177.3 ? 51 O ? I HOH . ? B HOH 211 ? 1_555 MG ? F MG . ? B MG 208 ? 1_555 O ? I HOH . ? B HOH 212 ? 1_555 86.0 ? 52 O ? I HOH . ? B HOH 209 ? 1_555 MG ? F MG . ? B MG 208 ? 1_555 O ? I HOH . ? B HOH 213 ? 1_555 95.4 ? 53 O ? I HOH . ? B HOH 210 ? 1_555 MG ? F MG . ? B MG 208 ? 1_555 O ? I HOH . ? B HOH 213 ? 1_555 90.6 ? 54 O ? I HOH . ? B HOH 211 ? 1_555 MG ? F MG . ? B MG 208 ? 1_555 O ? I HOH . ? B HOH 213 ? 1_555 92.6 ? 55 O ? I HOH . ? B HOH 212 ? 1_555 MG ? F MG . ? B MG 208 ? 1_555 O ? I HOH . ? B HOH 213 ? 1_555 87.7 ? 56 O ? I HOH . ? B HOH 209 ? 1_555 MG ? F MG . ? B MG 208 ? 1_555 O ? I HOH . ? B HOH 214 ? 1_555 84.8 ? 57 O ? I HOH . ? B HOH 210 ? 1_555 MG ? F MG . ? B MG 208 ? 1_555 O ? I HOH . ? B HOH 214 ? 1_555 90.7 ? 58 O ? I HOH . ? B HOH 211 ? 1_555 MG ? F MG . ? B MG 208 ? 1_555 O ? I HOH . ? B HOH 214 ? 1_555 87.0 ? 59 O ? I HOH . ? B HOH 212 ? 1_555 MG ? F MG . ? B MG 208 ? 1_555 O ? I HOH . ? B HOH 214 ? 1_555 91.0 ? 60 O ? I HOH . ? B HOH 213 ? 1_555 MG ? F MG . ? B MG 208 ? 1_555 O ? I HOH . ? B HOH 214 ? 1_555 178.7 ? 61 O ? I HOH . ? B HOH 316 ? 1_555 MG ? G MG . ? B MG 315 ? 1_555 O ? I HOH . ? B HOH 317 ? 1_555 91.4 ? 62 O ? I HOH . ? B HOH 316 ? 1_555 MG ? G MG . ? B MG 315 ? 1_555 O ? I HOH . ? B HOH 318 ? 1_555 164.0 ? 63 O ? I HOH . ? B HOH 317 ? 1_555 MG ? G MG . ? B MG 315 ? 1_555 O ? I HOH . ? B HOH 318 ? 1_555 94.2 ? 64 O ? I HOH . ? B HOH 316 ? 1_555 MG ? G MG . ? B MG 315 ? 1_555 O ? I HOH . ? B HOH 319 ? 1_555 95.7 ? 65 O ? I HOH . ? B HOH 317 ? 1_555 MG ? G MG . ? B MG 315 ? 1_555 O ? I HOH . ? B HOH 319 ? 1_555 94.6 ? 66 O ? I HOH . ? B HOH 318 ? 1_555 MG ? G MG . ? B MG 315 ? 1_555 O ? I HOH . ? B HOH 319 ? 1_555 98.7 ? 67 O ? I HOH . ? B HOH 316 ? 1_555 MG ? G MG . ? B MG 315 ? 1_555 O ? I HOH . ? B HOH 320 ? 1_555 86.9 ? 68 O ? I HOH . ? B HOH 317 ? 1_555 MG ? G MG . ? B MG 315 ? 1_555 O ? I HOH . ? B HOH 320 ? 1_555 83.1 ? 69 O ? I HOH . ? B HOH 318 ? 1_555 MG ? G MG . ? B MG 315 ? 1_555 O ? I HOH . ? B HOH 320 ? 1_555 79.0 ? 70 O ? I HOH . ? B HOH 319 ? 1_555 MG ? G MG . ? B MG 315 ? 1_555 O ? I HOH . ? B HOH 320 ? 1_555 176.6 ? 71 O ? I HOH . ? B HOH 316 ? 1_555 MG ? G MG . ? B MG 315 ? 1_555 O ? I HOH . ? B HOH 321 ? 1_555 78.5 ? 72 O ? I HOH . ? B HOH 317 ? 1_555 MG ? G MG . ? B MG 315 ? 1_555 O ? I HOH . ? B HOH 321 ? 1_555 164.0 ? 73 O ? I HOH . ? B HOH 318 ? 1_555 MG ? G MG . ? B MG 315 ? 1_555 O ? I HOH . ? B HOH 321 ? 1_555 92.4 ? 74 O ? I HOH . ? B HOH 319 ? 1_555 MG ? G MG . ? B MG 315 ? 1_555 O ? I HOH . ? B HOH 321 ? 1_555 98.7 ? 75 O ? I HOH . ? B HOH 320 ? 1_555 MG ? G MG . ? B MG 315 ? 1_555 O ? I HOH . ? B HOH 321 ? 1_555 84.0 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 201 ? 6 'BINDING SITE FOR RESIDUE MG A 201' AC2 Software B MG 208 ? 6 'BINDING SITE FOR RESIDUE MG B 208' AC3 Software A MG 301 ? 6 'BINDING SITE FOR RESIDUE MG A 301' AC4 Software A MG 308 ? 6 'BINDING SITE FOR RESIDUE MG A 308' AC5 Software B MG 315 ? 6 'BINDING SITE FOR RESIDUE MG B 315' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH H . ? HOH A 202 . ? 1_555 ? 2 AC1 6 HOH H . ? HOH A 203 . ? 1_555 ? 3 AC1 6 HOH H . ? HOH A 204 . ? 1_555 ? 4 AC1 6 HOH H . ? HOH A 205 . ? 1_555 ? 5 AC1 6 HOH H . ? HOH A 206 . ? 1_555 ? 6 AC1 6 HOH H . ? HOH A 207 . ? 1_555 ? 7 AC2 6 HOH I . ? HOH B 209 . ? 1_555 ? 8 AC2 6 HOH I . ? HOH B 210 . ? 1_555 ? 9 AC2 6 HOH I . ? HOH B 211 . ? 1_555 ? 10 AC2 6 HOH I . ? HOH B 212 . ? 1_555 ? 11 AC2 6 HOH I . ? HOH B 213 . ? 1_555 ? 12 AC2 6 HOH I . ? HOH B 214 . ? 1_555 ? 13 AC3 6 HOH H . ? HOH A 302 . ? 1_555 ? 14 AC3 6 HOH H . ? HOH A 303 . ? 1_555 ? 15 AC3 6 HOH H . ? HOH A 304 . ? 1_555 ? 16 AC3 6 HOH H . ? HOH A 305 . ? 1_555 ? 17 AC3 6 HOH H . ? HOH A 306 . ? 1_555 ? 18 AC3 6 HOH H . ? HOH A 307 . ? 1_555 ? 19 AC4 6 HOH H . ? HOH A 309 . ? 1_555 ? 20 AC4 6 HOH H . ? HOH A 310 . ? 1_555 ? 21 AC4 6 HOH H . ? HOH A 311 . ? 1_555 ? 22 AC4 6 HOH H . ? HOH A 312 . ? 1_555 ? 23 AC4 6 HOH H . ? HOH A 313 . ? 1_555 ? 24 AC4 6 HOH H . ? HOH A 314 . ? 1_555 ? 25 AC5 6 HOH I . ? HOH B 316 . ? 1_555 ? 26 AC5 6 HOH I . ? HOH B 317 . ? 1_555 ? 27 AC5 6 HOH I . ? HOH B 318 . ? 1_555 ? 28 AC5 6 HOH I . ? HOH B 319 . ? 1_555 ? 29 AC5 6 HOH I . ? HOH B 320 . ? 1_555 ? 30 AC5 6 HOH I . ? HOH B 321 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 424 ? ? O A HOH 537 ? ? 2.14 2 1 O A HOH 453 ? ? O B HOH 319 ? ? 2.18 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 "O3'" _pdbx_validate_symm_contact.auth_asym_id_1 B _pdbx_validate_symm_contact.auth_comp_id_1 DC _pdbx_validate_symm_contact.auth_seq_id_1 14 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 518 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_555 _pdbx_validate_symm_contact.dist 2.04 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 DA _pdbx_validate_rmsd_bond.auth_seq_id_1 13 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 P _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 DC _pdbx_validate_rmsd_bond.auth_seq_id_2 14 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.532 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation -0.075 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 103.69 108.00 -4.31 0.70 N 2 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 103.50 108.00 -4.50 0.70 N 3 1 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 103.41 108.00 -4.59 0.70 N 4 1 "C3'" A S02 7 ? ? "O3'" A S02 7 ? ? P A DC 9 ? ? 110.59 119.70 -9.11 1.20 Y 5 1 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 103.62 108.00 -4.38 0.70 N 6 1 "C3'" A DC 9 ? ? "O3'" A DC 9 ? ? P A DA 10 ? ? 127.21 119.70 7.51 1.20 Y 7 1 "C3'" A DA 10 ? ? "O3'" A DA 10 ? ? P A DA 11 ? ? 126.96 119.70 7.26 1.20 Y 8 1 "C3'" A DA 11 ? ? "O3'" A DA 11 ? ? P A DA 12 ? ? 126.90 119.70 7.20 1.20 Y 9 1 "O5'" A DC 14 ? ? P A DC 14 ? ? OP1 A DC 14 ? ? 95.65 105.70 -10.05 0.90 N 10 1 "O5'" A DC 14 ? ? "C5'" A DC 14 ? ? "C4'" A DC 14 ? ? 100.40 109.40 -9.00 0.80 N 11 1 P A DC 14 ? ? "O5'" A DC 14 ? ? "C5'" A DC 14 ? ? 110.45 120.90 -10.45 1.60 N 12 1 "O4'" A DC 14 ? ? "C4'" A DC 14 ? ? "C3'" A DC 14 ? ? 111.69 106.00 5.69 0.60 N 13 1 "O4'" B DT 5 ? ? "C1'" B DT 5 ? ? N1 B DT 5 ? ? 103.41 108.00 -4.59 0.70 N 14 1 "C3'" B S02 7 ? ? "O3'" B S02 7 ? ? P B DC 9 ? ? 109.76 119.70 -9.94 1.20 Y 15 1 "O4'" B DC 9 ? ? "C1'" B DC 9 ? ? N1 B DC 9 ? ? 110.46 108.30 2.16 0.30 N # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 C4A ? A S02 7 ? PLANAR . 2 1 C4B ? A S02 7 ? PLANAR . 3 1 C4A ? B S02 7 ? PLANAR . 4 1 C4B ? B S02 7 ? PLANAR . # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 9.4124 2.1378 7.9253 0.0991 0.0004 0.0718 -0.0038 -0.0082 -0.0043 2.0786 0.3326 0.1001 0.0610 -0.0748 -0.0446 -0.0028 0.0516 -0.0428 0.0514 0.0041 -0.0282 0.0188 0.0300 -0.0014 'X-RAY DIFFRACTION' 2 ? refined 22.7919 1.6144 20.0751 0.0898 0.0134 0.0825 0.0000 0.0115 -0.0034 -0.0517 0.1413 2.2258 0.3557 -0.6334 -0.5311 0.0805 -0.0351 0.0299 0.0423 0.0493 0.0526 -0.0628 0.0688 -0.1298 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 1 1 A 13 14 ? A A 'X-RAY DIFFRACTION' ? 2 2 B 1 1 B 13 14 ? B B 'X-RAY DIFFRACTION' ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 MG MG MG N N 147 S02 P P N N 148 S02 O1P O N N 149 S02 O2P O N N 150 S02 O3P O N N 151 S02 "O5'" O N N 152 S02 "C5'" C N N 153 S02 "CA'" C N N 154 S02 "OB'" O N N 155 S02 C1A C N N 156 S02 C6A C N N 157 S02 C2A C N N 158 S02 C3A C N N 159 S02 C4A C N R 160 S02 C7A C N N 161 S02 C5A C N N 162 S02 C1B C N N 163 S02 C6B C N N 164 S02 C2B C N N 165 S02 C3B C N N 166 S02 C4B C N R 167 S02 C7B C N N 168 S02 C5B C N N 169 S02 "OC'" O N N 170 S02 "CD'" C N N 171 S02 "C3'" C N N 172 S02 "O3'" O N N 173 S02 HOP2 H N N 174 S02 HOP3 H N N 175 S02 "H5'1" H N N 176 S02 "H5'2" H N N 177 S02 HA1 H N N 178 S02 HA2 H N N 179 S02 H1A H N N 180 S02 H6A1 H N N 181 S02 H6A2 H N N 182 S02 H2A1 H N N 183 S02 H2A2 H N N 184 S02 H3A1 H N N 185 S02 H3A2 H N N 186 S02 H7A H N N 187 S02 H5A1 H N N 188 S02 H5A2 H N N 189 S02 H1B H N N 190 S02 H6B1 H N N 191 S02 H6B2 H N N 192 S02 H2B1 H N N 193 S02 H2B2 H N N 194 S02 H3B1 H N N 195 S02 H3B2 H N N 196 S02 H7B H N N 197 S02 H5B1 H N N 198 S02 H5B2 H N N 199 S02 "HD'1" H N N 200 S02 "HD'2" H N N 201 S02 "H3'1" H N N 202 S02 "H3'2" H N N 203 S02 "HO3'" H N N 204 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 S02 P O1P doub N N 152 S02 P O2P sing N N 153 S02 P O3P sing N N 154 S02 P "O5'" sing N N 155 S02 O2P HOP2 sing N N 156 S02 O3P HOP3 sing N N 157 S02 "O5'" "C5'" sing N N 158 S02 "C5'" "CA'" sing N N 159 S02 "C5'" "H5'1" sing N N 160 S02 "C5'" "H5'2" sing N N 161 S02 "CA'" "OB'" sing N N 162 S02 "CA'" HA1 sing N N 163 S02 "CA'" HA2 sing N N 164 S02 "OB'" C1A sing N N 165 S02 C1A C6A sing N N 166 S02 C1A C2A sing N N 167 S02 C1A H1A sing N N 168 S02 C6A C5A sing N N 169 S02 C6A H6A1 sing N N 170 S02 C6A H6A2 sing N N 171 S02 C2A C3A sing N N 172 S02 C2A H2A1 sing N N 173 S02 C2A H2A2 sing N N 174 S02 C3A C4A sing N N 175 S02 C3A H3A1 sing N N 176 S02 C3A H3A2 sing N N 177 S02 C4A C7A doub N N 178 S02 C4A C5A sing N N 179 S02 C7A C7B sing N N 180 S02 C7A H7A sing N N 181 S02 C5A H5A1 sing N N 182 S02 C5A H5A2 sing N N 183 S02 C1B C6B sing N N 184 S02 C1B C2B sing N N 185 S02 C1B "OC'" sing N N 186 S02 C1B H1B sing N N 187 S02 C6B C5B sing N N 188 S02 C6B H6B1 sing N N 189 S02 C6B H6B2 sing N N 190 S02 C2B C3B sing N N 191 S02 C2B H2B1 sing N N 192 S02 C2B H2B2 sing N N 193 S02 C3B C4B sing N N 194 S02 C3B H3B1 sing N N 195 S02 C3B H3B2 sing N N 196 S02 C4B C7B doub N N 197 S02 C4B C5B sing N N 198 S02 C7B H7B sing N N 199 S02 C5B H5B1 sing N N 200 S02 C5B H5B2 sing N N 201 S02 "OC'" "CD'" sing N N 202 S02 "CD'" "C3'" sing N N 203 S02 "CD'" "HD'1" sing N N 204 S02 "CD'" "HD'2" sing N N 205 S02 "C3'" "O3'" sing N N 206 S02 "C3'" "H3'1" sing N N 207 S02 "C3'" "H3'2" sing N N 208 S02 "O3'" "HO3'" sing N N 209 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1PUY 'double helix' 1PUY 'b-form double helix' 1PUY 'hairpin loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 A DC 13 1_555 -0.129 -0.089 0.002 -12.782 -19.059 -0.638 1 A_DG1:DC14_A A 1 ? A 14 ? 19 1 1 A DT 2 1_555 A DA 12 1_555 -0.050 -0.130 0.011 -6.231 -11.471 0.994 2 A_DT2:DA13_A A 2 ? A 13 ? 20 1 1 A DT 3 1_555 A DA 11 1_555 -0.041 -0.104 0.022 -7.406 -11.513 2.210 3 A_DT3:DA12_A A 3 ? A 12 ? 20 1 1 A DT 4 1_555 A DA 10 1_555 -0.088 -0.167 -0.036 -7.828 -14.394 -0.240 4 A_DT4:DA11_A A 4 ? A 11 ? 20 1 1 A DT 5 1_555 A DA 9 1_555 -0.056 -0.136 -0.043 -9.334 -17.679 2.281 5 A_DT5:DA10_A A 5 ? A 10 ? 20 1 1 A DG 6 1_555 A DC 8 1_555 -0.144 -0.048 0.176 2.127 -4.572 -1.513 6 A_DG6:DC9_A A 6 ? A 9 ? 19 1 1 B DG 1 1_555 B DC 13 1_555 -0.347 -0.162 0.029 -5.555 -14.767 0.101 7 B_DG1:DC14_B B 1 ? B 14 ? 19 1 1 B DT 2 1_555 B DA 12 1_555 -0.150 -0.166 0.299 -14.909 -17.022 1.460 8 B_DT2:DA13_B B 2 ? B 13 ? 20 1 1 B DT 3 1_555 B DA 11 1_555 -0.062 -0.118 -0.165 -2.362 -13.153 3.534 9 B_DT3:DA12_B B 3 ? B 12 ? 20 1 1 B DT 4 1_555 B DA 10 1_555 -0.126 -0.142 0.106 -7.816 -17.437 3.434 10 B_DT4:DA11_B B 4 ? B 11 ? 20 1 1 B DT 5 1_555 B DA 9 1_555 -0.075 -0.139 0.029 -13.165 -15.763 0.337 11 B_DT5:DA10_B B 5 ? B 10 ? 20 1 1 B DG 6 1_555 B DC 8 1_555 -0.211 -0.122 0.052 -6.828 0.899 0.226 12 B_DG6:DC9_B B 6 ? B 9 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 A DC 13 1_555 A DT 2 1_555 A DA 12 1_555 -0.596 -0.885 3.047 1.507 3.393 36.014 -1.862 1.154 2.928 5.470 -2.429 36.198 1 AA_DG1DT2:DA13DC14_AA A 1 ? A 14 ? A 2 ? A 13 ? 1 A DT 2 1_555 A DA 12 1_555 A DT 3 1_555 A DA 11 1_555 -0.195 -0.517 3.334 1.353 -5.047 37.114 -0.125 0.485 3.364 -7.882 -2.112 37.467 2 AA_DT2DT3:DA12DA13_AA A 2 ? A 13 ? A 3 ? A 12 ? 1 A DT 3 1_555 A DA 11 1_555 A DT 4 1_555 A DA 10 1_555 -0.011 -0.002 3.217 1.335 -2.858 39.394 0.327 0.170 3.208 -4.231 -1.977 39.515 3 AA_DT3DT4:DA11DA12_AA A 3 ? A 12 ? A 4 ? A 11 ? 1 A DT 4 1_555 A DA 10 1_555 A DT 5 1_555 A DA 9 1_555 0.133 0.533 3.259 0.717 -3.430 39.944 1.166 -0.112 3.206 -5.009 -1.047 40.092 4 AA_DT4DT5:DA10DA11_AA A 4 ? A 11 ? A 5 ? A 10 ? 1 A DT 5 1_555 A DA 9 1_555 A DG 6 1_555 A DC 8 1_555 -0.026 1.092 3.105 -2.961 9.611 27.510 0.066 -0.595 3.278 19.407 5.979 29.257 5 AA_DT5DG6:DC9DA10_AA A 5 ? A 10 ? A 6 ? A 9 ? 1 B DG 1 1_555 B DC 13 1_555 B DT 2 1_555 B DA 12 1_555 -0.487 -1.538 3.527 -0.962 0.859 32.549 -2.903 0.688 3.499 1.532 1.716 32.574 6 BB_DG1DT2:DA13DC14_BB B 1 ? B 14 ? B 2 ? B 13 ? 1 B DT 2 1_555 B DA 12 1_555 B DT 3 1_555 B DA 11 1_555 -0.273 -0.570 2.976 5.441 4.173 31.532 -1.689 1.355 2.795 7.567 -9.868 32.250 7 BB_DT2DT3:DA12DA13_BB B 2 ? B 13 ? B 3 ? B 12 ? 1 B DT 3 1_555 B DA 11 1_555 B DT 4 1_555 B DA 10 1_555 -0.365 -0.375 3.425 -1.244 -1.212 36.174 -0.425 0.404 3.446 -1.951 2.001 36.214 8 BB_DT3DT4:DA11DA12_BB B 3 ? B 12 ? B 4 ? B 11 ? 1 B DT 4 1_555 B DA 10 1_555 B DT 5 1_555 B DA 9 1_555 -0.272 -0.032 3.322 0.722 0.200 38.037 -0.075 0.510 3.316 0.306 -1.108 38.044 9 BB_DT4DT5:DA10DA11_BB B 4 ? B 11 ? B 5 ? B 10 ? 1 B DT 5 1_555 B DA 9 1_555 B DG 6 1_555 B DC 8 1_555 1.034 0.867 3.185 -0.528 2.355 36.207 1.070 -1.732 3.218 3.784 0.849 36.285 10 BB_DT5DG6:DC9DA10_BB B 5 ? B 10 ? B 6 ? B 9 ? # _atom_sites.entry_id 1PUY _atom_sites.fract_transf_matrix[1][1] 0.033456 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023889 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019569 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_