data_1PVT # _entry.id 1PVT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1PVT RCSB RCSB019614 WWPDB D_1000019614 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC4569 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1PVT _pdbx_database_status.recvd_initial_deposition_date 2003-06-28 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Osipiuk, J.' 1 'Cuff, M.E.' 2 'Korolev, O.' 3 'Skarina, T.' 4 'Savchenko, A.' 5 'Edwards, A.' 6 'Joachimiak, A.' 7 'Midwest Center for Structural Genomics (MCSG)' 8 # _citation.id primary _citation.title 'Crystal structure of sugar-phosphate aldolase from Thermotoga maritima.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Osipiuk, J.' 1 primary 'Cuff, M.E.' 2 primary 'Korolev, O.' 3 primary 'Skarina, T.' 4 primary 'Savchenko, A.' 5 primary 'Edwards, A.' 6 primary 'Joachimiak, A.' 7 # _cell.entry_id 1PVT _cell.length_a 108.510 _cell.length_b 108.510 _cell.length_c 53.996 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PVT _symmetry.space_group_name_H-M 'P 4 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'sugar-phosphate aldolase' 27360.305 1 ? ? ? ? 2 water nat water 18.015 23 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GH(MSE)RETIREIQKVAYWLAIKGLSEANAGNISVRLDERPEGYEVKSVNEYGFDYDGPE(MSE)YLLITATGSR (MSE)REVYEDDSKICLLHVLPGKHYEILHGNGKPTSEFPTHL(MSE)IHAKFKE(MSE)NPEKKAIVHTHPLNLLTL (MSE)NLEEFQELLPK(MSE)(MSE)KIHPEVLIFFPQGISVVEFEKPGSVELGLKTVEKSEGKDAVLWDKHGVVAFGKD VAEAYDRVEILEKAAEILLRVLSLGRNPTGVPEGWL ; _entity_poly.pdbx_seq_one_letter_code_can ;GHMRETIREIQKVAYWLAIKGLSEANAGNISVRLDERPEGYEVKSVNEYGFDYDGPEMYLLITATGSRMREVYEDDSKIC LLHVLPGKHYEILHGNGKPTSEFPTHLMIHAKFKEMNPEKKAIVHTHPLNLLTLMNLEEFQELLPKMMKIHPEVLIFFPQ GISVVEFEKPGSVELGLKTVEKSEGKDAVLWDKHGVVAFGKDVAEAYDRVEILEKAAEILLRVLSLGRNPTGVPEGWL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC4569 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 HIS n 1 3 MSE n 1 4 ARG n 1 5 GLU n 1 6 THR n 1 7 ILE n 1 8 ARG n 1 9 GLU n 1 10 ILE n 1 11 GLN n 1 12 LYS n 1 13 VAL n 1 14 ALA n 1 15 TYR n 1 16 TRP n 1 17 LEU n 1 18 ALA n 1 19 ILE n 1 20 LYS n 1 21 GLY n 1 22 LEU n 1 23 SER n 1 24 GLU n 1 25 ALA n 1 26 ASN n 1 27 ALA n 1 28 GLY n 1 29 ASN n 1 30 ILE n 1 31 SER n 1 32 VAL n 1 33 ARG n 1 34 LEU n 1 35 ASP n 1 36 GLU n 1 37 ARG n 1 38 PRO n 1 39 GLU n 1 40 GLY n 1 41 TYR n 1 42 GLU n 1 43 VAL n 1 44 LYS n 1 45 SER n 1 46 VAL n 1 47 ASN n 1 48 GLU n 1 49 TYR n 1 50 GLY n 1 51 PHE n 1 52 ASP n 1 53 TYR n 1 54 ASP n 1 55 GLY n 1 56 PRO n 1 57 GLU n 1 58 MSE n 1 59 TYR n 1 60 LEU n 1 61 LEU n 1 62 ILE n 1 63 THR n 1 64 ALA n 1 65 THR n 1 66 GLY n 1 67 SER n 1 68 ARG n 1 69 MSE n 1 70 ARG n 1 71 GLU n 1 72 VAL n 1 73 TYR n 1 74 GLU n 1 75 ASP n 1 76 ASP n 1 77 SER n 1 78 LYS n 1 79 ILE n 1 80 CYS n 1 81 LEU n 1 82 LEU n 1 83 HIS n 1 84 VAL n 1 85 LEU n 1 86 PRO n 1 87 GLY n 1 88 LYS n 1 89 HIS n 1 90 TYR n 1 91 GLU n 1 92 ILE n 1 93 LEU n 1 94 HIS n 1 95 GLY n 1 96 ASN n 1 97 GLY n 1 98 LYS n 1 99 PRO n 1 100 THR n 1 101 SER n 1 102 GLU n 1 103 PHE n 1 104 PRO n 1 105 THR n 1 106 HIS n 1 107 LEU n 1 108 MSE n 1 109 ILE n 1 110 HIS n 1 111 ALA n 1 112 LYS n 1 113 PHE n 1 114 LYS n 1 115 GLU n 1 116 MSE n 1 117 ASN n 1 118 PRO n 1 119 GLU n 1 120 LYS n 1 121 LYS n 1 122 ALA n 1 123 ILE n 1 124 VAL n 1 125 HIS n 1 126 THR n 1 127 HIS n 1 128 PRO n 1 129 LEU n 1 130 ASN n 1 131 LEU n 1 132 LEU n 1 133 THR n 1 134 LEU n 1 135 MSE n 1 136 ASN n 1 137 LEU n 1 138 GLU n 1 139 GLU n 1 140 PHE n 1 141 GLN n 1 142 GLU n 1 143 LEU n 1 144 LEU n 1 145 PRO n 1 146 LYS n 1 147 MSE n 1 148 MSE n 1 149 LYS n 1 150 ILE n 1 151 HIS n 1 152 PRO n 1 153 GLU n 1 154 VAL n 1 155 LEU n 1 156 ILE n 1 157 PHE n 1 158 PHE n 1 159 PRO n 1 160 GLN n 1 161 GLY n 1 162 ILE n 1 163 SER n 1 164 VAL n 1 165 VAL n 1 166 GLU n 1 167 PHE n 1 168 GLU n 1 169 LYS n 1 170 PRO n 1 171 GLY n 1 172 SER n 1 173 VAL n 1 174 GLU n 1 175 LEU n 1 176 GLY n 1 177 LEU n 1 178 LYS n 1 179 THR n 1 180 VAL n 1 181 GLU n 1 182 LYS n 1 183 SER n 1 184 GLU n 1 185 GLY n 1 186 LYS n 1 187 ASP n 1 188 ALA n 1 189 VAL n 1 190 LEU n 1 191 TRP n 1 192 ASP n 1 193 LYS n 1 194 HIS n 1 195 GLY n 1 196 VAL n 1 197 VAL n 1 198 ALA n 1 199 PHE n 1 200 GLY n 1 201 LYS n 1 202 ASP n 1 203 VAL n 1 204 ALA n 1 205 GLU n 1 206 ALA n 1 207 TYR n 1 208 ASP n 1 209 ARG n 1 210 VAL n 1 211 GLU n 1 212 ILE n 1 213 LEU n 1 214 GLU n 1 215 LYS n 1 216 ALA n 1 217 ALA n 1 218 GLU n 1 219 ILE n 1 220 LEU n 1 221 LEU n 1 222 ARG n 1 223 VAL n 1 224 LEU n 1 225 SER n 1 226 LEU n 1 227 GLY n 1 228 ARG n 1 229 ASN n 1 230 PRO n 1 231 THR n 1 232 GLY n 1 233 VAL n 1 234 PRO n 1 235 GLU n 1 236 GLY n 1 237 TRP n 1 238 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Thermotoga _entity_src_gen.pdbx_gene_src_gene TM1072 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermotoga maritima' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2336 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9X0G1_THEMA _struct_ref.pdbx_db_accession Q9X0G1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;RETIREIQKVAYWLAIKGLSEANAGNISVRLDERPEGYEVKSVNEYGFDYDGPEMYLLITATGSRMREVYEDDSKICLLH VLPGKHYEILHGNGKPTSEFPTHLMIHAKFKEMNPEKKAIVHTHPLNLLTLMNLEEFQELLPKMMKIHPEVLIFFPQGIS VVEFEKPGSVELGLKTVEKSEGKDAVLWDKHGVVAFGKDVAEAYDRVEILEKAAEILLRVLSLGRNPTGVPEGWL ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1PVT _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 238 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9X0G1 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 236 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 236 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1PVT GLY A 1 X UNP Q9X0G1 ? ? 'CLONING ARTIFACT' 2 1 1 1PVT HIS A 2 X UNP Q9X0G1 ? ? 'CLONING ARTIFACT' 1 2 1 1PVT MSE A 3 ? UNP Q9X0G1 MET 1 'MODIFIED RESIDUE' 1 3 1 1PVT MSE A 58 ? UNP Q9X0G1 MET 56 'MODIFIED RESIDUE' 56 4 1 1PVT MSE A 69 ? UNP Q9X0G1 MET 67 'MODIFIED RESIDUE' 67 5 1 1PVT MSE A 108 ? UNP Q9X0G1 MET 106 'MODIFIED RESIDUE' 106 6 1 1PVT MSE A 116 ? UNP Q9X0G1 MET 114 'MODIFIED RESIDUE' 114 7 1 1PVT MSE A 135 ? UNP Q9X0G1 MET 133 'MODIFIED RESIDUE' 133 8 1 1PVT MSE A 147 ? UNP Q9X0G1 MET 145 'MODIFIED RESIDUE' 145 9 1 1PVT MSE A 148 ? UNP Q9X0G1 MET 146 'MODIFIED RESIDUE' 146 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1PVT _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.90 _exptl_crystal.density_percent_sol 57.63 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details 'ammonium sulfate, sodium chloride, Hepes, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type SBC-2 _diffrn_detector.pdbx_collection_date 2002-10-25 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97945 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97945 # _reflns.entry_id 1PVT _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 2.400 _reflns.number_obs 22513 _reflns.number_all ? _reflns.percent_possible_obs 93.2 _reflns.pdbx_Rmerge_I_obs 0.063 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 8.7000 _reflns.B_iso_Wilson_estimate 59.3 _reflns.pdbx_redundancy 7.500 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.40 _reflns_shell.d_res_low 2.49 _reflns_shell.percent_possible_all 39.3 _reflns_shell.Rmerge_I_obs 0.63 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1PVT _refine.ls_number_reflns_obs 11543 _refine.ls_number_reflns_all 11661 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1399182.74 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 48.34 _refine.ls_d_res_high 2.50 _refine.ls_percent_reflns_obs 99.0 _refine.ls_R_factor_obs 0.257 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.257 _refine.ls_R_factor_R_free 0.296 _refine.ls_R_factor_R_free_error 0.009 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.8 _refine.ls_number_reflns_R_free 1129 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 69.8 _refine.aniso_B[1][1] 5.51 _refine.aniso_B[2][2] 2.68 _refine.aniso_B[3][3] -8.18 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.385791 _refine.solvent_model_param_bsol 47.339 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'residues A2X and A1X represent part of recombinant fusion protein, protein residues 231-236 are missing in the structure' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1PVT _refine_analyze.Luzzati_coordinate_error_obs 0.37 _refine_analyze.Luzzati_sigma_a_obs 0.37 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.43 _refine_analyze.Luzzati_sigma_a_free 0.42 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1848 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 23 _refine_hist.number_atoms_total 1871 _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 48.34 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 23.5 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.84 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.57 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.89 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 1.86 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 3.02 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.50 _refine_ls_shell.d_res_low 2.66 _refine_ls_shell.number_reflns_R_work 1695 _refine_ls_shell.R_factor_R_work 0.372 _refine_ls_shell.percent_reflns_obs 99.1 _refine_ls_shell.R_factor_R_free 0.409 _refine_ls_shell.R_factor_R_free_error 0.030 _refine_ls_shell.percent_reflns_R_free 9.7 _refine_ls_shell.number_reflns_R_free 183 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' 4 &_1_PARAMETER_INFILE_4 &_1_TOPOLOGY_INFILE_4 'X-RAY DIFFRACTION' 5 &_1_PARAMETER_INFILE_5 &_1_TOPOLOGY_INFILE_5 'X-RAY DIFFRACTION' # _struct.entry_id 1PVT _struct.title 'Crystal structure of sugar-phosphate aldolase from Thermotoga maritima' _struct.pdbx_descriptor 'sugar-phosphate aldolase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1PVT _struct_keywords.pdbx_keywords LYASE _struct_keywords.text ;Structural genomics, sugar-phosphate aldolase, PSI, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, LYASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 1 X LYS A 20 ? GLY A 2 LYS A 18 1 ? 20 HELX_P HELX_P2 2 ARG A 68 ? TYR A 73 ? ARG A 66 TYR A 71 1 ? 6 HELX_P HELX_P3 3 ASP A 75 ? SER A 77 ? ASP A 73 SER A 75 5 ? 3 HELX_P HELX_P4 4 GLU A 102 ? MSE A 116 ? GLU A 100 MSE A 114 1 ? 15 HELX_P HELX_P5 5 PRO A 128 ? MSE A 135 ? PRO A 126 MSE A 133 1 ? 8 HELX_P HELX_P6 6 LEU A 143 ? MSE A 148 ? LEU A 141 MSE A 146 1 ? 6 HELX_P HELX_P7 7 HIS A 151 ? PHE A 158 ? HIS A 149 PHE A 156 1 ? 8 HELX_P HELX_P8 8 SER A 172 ? SER A 183 ? SER A 170 SER A 181 1 ? 12 HELX_P HELX_P9 9 ASP A 202 ? SER A 225 ? ASP A 200 SER A 223 1 ? 24 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A HIS 2 C ? X ? 1_555 A MSE 3 N ? ? A HIS 1 A MSE 1 1_555 ? ? ? ? ? ? ? 1.329 ? covale2 covale ? ? A MSE 3 C ? ? ? 1_555 A ARG 4 N ? ? A MSE 1 A ARG 2 1_555 ? ? ? ? ? ? ? 1.330 ? covale3 covale ? ? A GLU 57 C ? ? ? 1_555 A MSE 58 N ? ? A GLU 55 A MSE 56 1_555 ? ? ? ? ? ? ? 1.335 ? covale4 covale ? ? A MSE 58 C ? ? ? 1_555 A TYR 59 N ? ? A MSE 56 A TYR 57 1_555 ? ? ? ? ? ? ? 1.326 ? covale5 covale ? ? A ARG 68 C ? ? ? 1_555 A MSE 69 N ? ? A ARG 66 A MSE 67 1_555 ? ? ? ? ? ? ? 1.323 ? covale6 covale ? ? A MSE 69 C ? ? ? 1_555 A ARG 70 N ? ? A MSE 67 A ARG 68 1_555 ? ? ? ? ? ? ? 1.333 ? covale7 covale ? ? A LEU 107 C ? ? ? 1_555 A MSE 108 N ? ? A LEU 105 A MSE 106 1_555 ? ? ? ? ? ? ? 1.327 ? covale8 covale ? ? A MSE 108 C ? ? ? 1_555 A ILE 109 N ? ? A MSE 106 A ILE 107 1_555 ? ? ? ? ? ? ? 1.329 ? covale9 covale ? ? A GLU 115 C ? ? ? 1_555 A MSE 116 N ? ? A GLU 113 A MSE 114 1_555 ? ? ? ? ? ? ? 1.329 ? covale10 covale ? ? A MSE 116 C ? ? ? 1_555 A ASN 117 N ? ? A MSE 114 A ASN 115 1_555 ? ? ? ? ? ? ? 1.325 ? covale11 covale ? ? A LEU 134 C ? ? ? 1_555 A MSE 135 N ? ? A LEU 132 A MSE 133 1_555 ? ? ? ? ? ? ? 1.327 ? covale12 covale ? ? A MSE 135 C ? ? ? 1_555 A ASN 136 N ? ? A MSE 133 A ASN 134 1_555 ? ? ? ? ? ? ? 1.324 ? covale13 covale ? ? A LYS 146 C ? ? ? 1_555 A MSE 147 N ? ? A LYS 144 A MSE 145 1_555 ? ? ? ? ? ? ? 1.330 ? covale14 covale ? ? A MSE 147 C ? ? ? 1_555 A MSE 148 N ? ? A MSE 145 A MSE 146 1_555 ? ? ? ? ? ? ? 1.323 ? covale15 covale ? ? A MSE 148 C ? ? ? 1_555 A LYS 149 N ? ? A MSE 146 A LYS 147 1_555 ? ? ? ? ? ? ? 1.325 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 9 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 45 ? TYR A 53 ? SER A 43 TYR A 51 A 2 GLY A 87 ? HIS A 94 ? GLY A 85 HIS A 92 A 3 ILE A 79 ? VAL A 84 ? ILE A 77 VAL A 82 A 4 MSE A 58 ? THR A 63 ? MSE A 56 THR A 61 A 5 GLY A 28 ? LEU A 34 ? GLY A 26 LEU A 32 A 6 ALA A 122 ? THR A 126 ? ALA A 120 THR A 124 A 7 VAL A 196 ? GLY A 200 ? VAL A 194 GLY A 198 A 8 ALA A 188 ? TRP A 191 ? ALA A 186 TRP A 189 A 9 SER A 163 ? VAL A 165 ? SER A 161 VAL A 163 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER A 45 ? N SER A 43 O ILE A 92 ? O ILE A 90 A 2 3 O LEU A 93 ? O LEU A 91 N LEU A 81 ? N LEU A 79 A 3 4 O VAL A 84 ? O VAL A 82 N MSE A 58 ? N MSE A 56 A 4 5 O TYR A 59 ? O TYR A 57 N LEU A 34 ? N LEU A 32 A 5 6 N SER A 31 ? N SER A 29 O ILE A 123 ? O ILE A 121 A 6 7 N VAL A 124 ? N VAL A 122 O ALA A 198 ? O ALA A 196 A 7 8 O VAL A 197 ? O VAL A 195 N VAL A 189 ? N VAL A 187 A 8 9 O LEU A 190 ? O LEU A 188 N SER A 163 ? N SER A 161 # _database_PDB_matrix.entry_id 1PVT _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1PVT _atom_sites.fract_transf_matrix[1][1] 0.009216 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009216 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018520 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 2 2 GLY GLY A X n A 1 2 HIS 2 1 1 HIS HIS A X n A 1 3 MSE 3 1 1 MSE MSE A . n A 1 4 ARG 4 2 2 ARG ARG A . n A 1 5 GLU 5 3 3 GLU GLU A . n A 1 6 THR 6 4 4 THR THR A . n A 1 7 ILE 7 5 5 ILE ILE A . n A 1 8 ARG 8 6 6 ARG ARG A . n A 1 9 GLU 9 7 7 GLU GLU A . n A 1 10 ILE 10 8 8 ILE ILE A . n A 1 11 GLN 11 9 9 GLN GLN A . n A 1 12 LYS 12 10 10 LYS LYS A . n A 1 13 VAL 13 11 11 VAL VAL A . n A 1 14 ALA 14 12 12 ALA ALA A . n A 1 15 TYR 15 13 13 TYR TYR A . n A 1 16 TRP 16 14 14 TRP TRP A . n A 1 17 LEU 17 15 15 LEU LEU A . n A 1 18 ALA 18 16 16 ALA ALA A . n A 1 19 ILE 19 17 17 ILE ILE A . n A 1 20 LYS 20 18 18 LYS LYS A . n A 1 21 GLY 21 19 19 GLY GLY A . n A 1 22 LEU 22 20 20 LEU LEU A . n A 1 23 SER 23 21 21 SER SER A . n A 1 24 GLU 24 22 22 GLU GLU A . n A 1 25 ALA 25 23 23 ALA ALA A . n A 1 26 ASN 26 24 24 ASN ASN A . n A 1 27 ALA 27 25 25 ALA ALA A . n A 1 28 GLY 28 26 26 GLY GLY A . n A 1 29 ASN 29 27 27 ASN ASN A . n A 1 30 ILE 30 28 28 ILE ILE A . n A 1 31 SER 31 29 29 SER SER A . n A 1 32 VAL 32 30 30 VAL VAL A . n A 1 33 ARG 33 31 31 ARG ARG A . n A 1 34 LEU 34 32 32 LEU LEU A . n A 1 35 ASP 35 33 33 ASP ASP A . n A 1 36 GLU 36 34 34 GLU GLU A . n A 1 37 ARG 37 35 35 ARG ARG A . n A 1 38 PRO 38 36 36 PRO PRO A . n A 1 39 GLU 39 37 37 GLU GLU A . n A 1 40 GLY 40 38 38 GLY GLY A . n A 1 41 TYR 41 39 39 TYR TYR A . n A 1 42 GLU 42 40 40 GLU GLU A . n A 1 43 VAL 43 41 41 VAL VAL A . n A 1 44 LYS 44 42 42 LYS LYS A . n A 1 45 SER 45 43 43 SER SER A . n A 1 46 VAL 46 44 44 VAL VAL A . n A 1 47 ASN 47 45 45 ASN ASN A . n A 1 48 GLU 48 46 46 GLU GLU A . n A 1 49 TYR 49 47 47 TYR TYR A . n A 1 50 GLY 50 48 48 GLY GLY A . n A 1 51 PHE 51 49 49 PHE PHE A . n A 1 52 ASP 52 50 50 ASP ASP A . n A 1 53 TYR 53 51 51 TYR TYR A . n A 1 54 ASP 54 52 52 ASP ASP A . n A 1 55 GLY 55 53 53 GLY GLY A . n A 1 56 PRO 56 54 54 PRO PRO A . n A 1 57 GLU 57 55 55 GLU GLU A . n A 1 58 MSE 58 56 56 MSE MSE A . n A 1 59 TYR 59 57 57 TYR TYR A . n A 1 60 LEU 60 58 58 LEU LEU A . n A 1 61 LEU 61 59 59 LEU LEU A . n A 1 62 ILE 62 60 60 ILE ILE A . n A 1 63 THR 63 61 61 THR THR A . n A 1 64 ALA 64 62 62 ALA ALA A . n A 1 65 THR 65 63 63 THR THR A . n A 1 66 GLY 66 64 64 GLY GLY A . n A 1 67 SER 67 65 65 SER SER A . n A 1 68 ARG 68 66 66 ARG ARG A . n A 1 69 MSE 69 67 67 MSE MSE A . n A 1 70 ARG 70 68 68 ARG ARG A . n A 1 71 GLU 71 69 69 GLU GLU A . n A 1 72 VAL 72 70 70 VAL VAL A . n A 1 73 TYR 73 71 71 TYR TYR A . n A 1 74 GLU 74 72 72 GLU GLU A . n A 1 75 ASP 75 73 73 ASP ASP A . n A 1 76 ASP 76 74 74 ASP ASP A . n A 1 77 SER 77 75 75 SER SER A . n A 1 78 LYS 78 76 76 LYS LYS A . n A 1 79 ILE 79 77 77 ILE ILE A . n A 1 80 CYS 80 78 78 CYS CYS A . n A 1 81 LEU 81 79 79 LEU LEU A . n A 1 82 LEU 82 80 80 LEU LEU A . n A 1 83 HIS 83 81 81 HIS HIS A . n A 1 84 VAL 84 82 82 VAL VAL A . n A 1 85 LEU 85 83 83 LEU LEU A . n A 1 86 PRO 86 84 84 PRO PRO A . n A 1 87 GLY 87 85 85 GLY GLY A . n A 1 88 LYS 88 86 86 LYS LYS A . n A 1 89 HIS 89 87 87 HIS HIS A . n A 1 90 TYR 90 88 88 TYR TYR A . n A 1 91 GLU 91 89 89 GLU GLU A . n A 1 92 ILE 92 90 90 ILE ILE A . n A 1 93 LEU 93 91 91 LEU LEU A . n A 1 94 HIS 94 92 92 HIS HIS A . n A 1 95 GLY 95 93 93 GLY GLY A . n A 1 96 ASN 96 94 94 ASN ASN A . n A 1 97 GLY 97 95 95 GLY GLY A . n A 1 98 LYS 98 96 96 LYS LYS A . n A 1 99 PRO 99 97 97 PRO PRO A . n A 1 100 THR 100 98 98 THR THR A . n A 1 101 SER 101 99 99 SER SER A . n A 1 102 GLU 102 100 100 GLU GLU A . n A 1 103 PHE 103 101 101 PHE PHE A . n A 1 104 PRO 104 102 102 PRO PRO A . n A 1 105 THR 105 103 103 THR THR A . n A 1 106 HIS 106 104 104 HIS HIS A . n A 1 107 LEU 107 105 105 LEU LEU A . n A 1 108 MSE 108 106 106 MSE MSE A . n A 1 109 ILE 109 107 107 ILE ILE A . n A 1 110 HIS 110 108 108 HIS HIS A . n A 1 111 ALA 111 109 109 ALA ALA A . n A 1 112 LYS 112 110 110 LYS LYS A . n A 1 113 PHE 113 111 111 PHE PHE A . n A 1 114 LYS 114 112 112 LYS LYS A . n A 1 115 GLU 115 113 113 GLU GLU A . n A 1 116 MSE 116 114 114 MSE MSE A . n A 1 117 ASN 117 115 115 ASN ASN A . n A 1 118 PRO 118 116 116 PRO PRO A . n A 1 119 GLU 119 117 117 GLU GLU A . n A 1 120 LYS 120 118 118 LYS LYS A . n A 1 121 LYS 121 119 119 LYS LYS A . n A 1 122 ALA 122 120 120 ALA ALA A . n A 1 123 ILE 123 121 121 ILE ILE A . n A 1 124 VAL 124 122 122 VAL VAL A . n A 1 125 HIS 125 123 123 HIS HIS A . n A 1 126 THR 126 124 124 THR THR A . n A 1 127 HIS 127 125 125 HIS HIS A . n A 1 128 PRO 128 126 126 PRO PRO A . n A 1 129 LEU 129 127 127 LEU LEU A . n A 1 130 ASN 130 128 128 ASN ASN A . n A 1 131 LEU 131 129 129 LEU LEU A . n A 1 132 LEU 132 130 130 LEU LEU A . n A 1 133 THR 133 131 131 THR THR A . n A 1 134 LEU 134 132 132 LEU LEU A . n A 1 135 MSE 135 133 133 MSE MSE A . n A 1 136 ASN 136 134 134 ASN ASN A . n A 1 137 LEU 137 135 135 LEU LEU A . n A 1 138 GLU 138 136 136 GLU GLU A . n A 1 139 GLU 139 137 137 GLU GLU A . n A 1 140 PHE 140 138 138 PHE PHE A . n A 1 141 GLN 141 139 139 GLN GLN A . n A 1 142 GLU 142 140 140 GLU GLU A . n A 1 143 LEU 143 141 141 LEU LEU A . n A 1 144 LEU 144 142 142 LEU LEU A . n A 1 145 PRO 145 143 143 PRO PRO A . n A 1 146 LYS 146 144 144 LYS LYS A . n A 1 147 MSE 147 145 145 MSE MSE A . n A 1 148 MSE 148 146 146 MSE MSE A . n A 1 149 LYS 149 147 147 LYS LYS A . n A 1 150 ILE 150 148 148 ILE ILE A . n A 1 151 HIS 151 149 149 HIS HIS A . n A 1 152 PRO 152 150 150 PRO PRO A . n A 1 153 GLU 153 151 151 GLU GLU A . n A 1 154 VAL 154 152 152 VAL VAL A . n A 1 155 LEU 155 153 153 LEU LEU A . n A 1 156 ILE 156 154 154 ILE ILE A . n A 1 157 PHE 157 155 155 PHE PHE A . n A 1 158 PHE 158 156 156 PHE PHE A . n A 1 159 PRO 159 157 157 PRO PRO A . n A 1 160 GLN 160 158 158 GLN GLN A . n A 1 161 GLY 161 159 159 GLY GLY A . n A 1 162 ILE 162 160 160 ILE ILE A . n A 1 163 SER 163 161 161 SER SER A . n A 1 164 VAL 164 162 162 VAL VAL A . n A 1 165 VAL 165 163 163 VAL VAL A . n A 1 166 GLU 166 164 164 GLU GLU A . n A 1 167 PHE 167 165 165 PHE PHE A . n A 1 168 GLU 168 166 166 GLU GLU A . n A 1 169 LYS 169 167 167 LYS LYS A . n A 1 170 PRO 170 168 168 PRO PRO A . n A 1 171 GLY 171 169 169 GLY GLY A . n A 1 172 SER 172 170 170 SER SER A . n A 1 173 VAL 173 171 171 VAL VAL A . n A 1 174 GLU 174 172 172 GLU GLU A . n A 1 175 LEU 175 173 173 LEU LEU A . n A 1 176 GLY 176 174 174 GLY GLY A . n A 1 177 LEU 177 175 175 LEU LEU A . n A 1 178 LYS 178 176 176 LYS LYS A . n A 1 179 THR 179 177 177 THR THR A . n A 1 180 VAL 180 178 178 VAL VAL A . n A 1 181 GLU 181 179 179 GLU GLU A . n A 1 182 LYS 182 180 180 LYS LYS A . n A 1 183 SER 183 181 181 SER SER A . n A 1 184 GLU 184 182 182 GLU GLU A . n A 1 185 GLY 185 183 183 GLY GLY A . n A 1 186 LYS 186 184 184 LYS LYS A . n A 1 187 ASP 187 185 185 ASP ASP A . n A 1 188 ALA 188 186 186 ALA ALA A . n A 1 189 VAL 189 187 187 VAL VAL A . n A 1 190 LEU 190 188 188 LEU LEU A . n A 1 191 TRP 191 189 189 TRP TRP A . n A 1 192 ASP 192 190 190 ASP ASP A . n A 1 193 LYS 193 191 191 LYS LYS A . n A 1 194 HIS 194 192 192 HIS HIS A . n A 1 195 GLY 195 193 193 GLY GLY A . n A 1 196 VAL 196 194 194 VAL VAL A . n A 1 197 VAL 197 195 195 VAL VAL A . n A 1 198 ALA 198 196 196 ALA ALA A . n A 1 199 PHE 199 197 197 PHE PHE A . n A 1 200 GLY 200 198 198 GLY GLY A . n A 1 201 LYS 201 199 199 LYS LYS A . n A 1 202 ASP 202 200 200 ASP ASP A . n A 1 203 VAL 203 201 201 VAL VAL A . n A 1 204 ALA 204 202 202 ALA ALA A . n A 1 205 GLU 205 203 203 GLU GLU A . n A 1 206 ALA 206 204 204 ALA ALA A . n A 1 207 TYR 207 205 205 TYR TYR A . n A 1 208 ASP 208 206 206 ASP ASP A . n A 1 209 ARG 209 207 207 ARG ARG A . n A 1 210 VAL 210 208 208 VAL VAL A . n A 1 211 GLU 211 209 209 GLU GLU A . n A 1 212 ILE 212 210 210 ILE ILE A . n A 1 213 LEU 213 211 211 LEU LEU A . n A 1 214 GLU 214 212 212 GLU GLU A . n A 1 215 LYS 215 213 213 LYS LYS A . n A 1 216 ALA 216 214 214 ALA ALA A . n A 1 217 ALA 217 215 215 ALA ALA A . n A 1 218 GLU 218 216 216 GLU GLU A . n A 1 219 ILE 219 217 217 ILE ILE A . n A 1 220 LEU 220 218 218 LEU LEU A . n A 1 221 LEU 221 219 219 LEU LEU A . n A 1 222 ARG 222 220 220 ARG ARG A . n A 1 223 VAL 223 221 221 VAL VAL A . n A 1 224 LEU 224 222 222 LEU LEU A . n A 1 225 SER 225 223 223 SER SER A . n A 1 226 LEU 226 224 224 LEU LEU A . n A 1 227 GLY 227 225 225 GLY GLY A . n A 1 228 ARG 228 226 226 ARG ARG A . n A 1 229 ASN 229 227 227 ASN ASN A . n A 1 230 PRO 230 228 228 PRO PRO A . n A 1 231 THR 231 229 229 THR THR A . n A 1 232 GLY 232 230 230 GLY GLY A . n A 1 233 VAL 233 231 ? ? ? A . n A 1 234 PRO 234 232 ? ? ? A . n A 1 235 GLU 235 233 ? ? ? A . n A 1 236 GLY 236 234 ? ? ? A . n A 1 237 TRP 237 235 ? ? ? A . n A 1 238 LEU 238 236 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 3 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 58 A MSE 56 ? MET SELENOMETHIONINE 3 A MSE 69 A MSE 67 ? MET SELENOMETHIONINE 4 A MSE 108 A MSE 106 ? MET SELENOMETHIONINE 5 A MSE 116 A MSE 114 ? MET SELENOMETHIONINE 6 A MSE 135 A MSE 133 ? MET SELENOMETHIONINE 7 A MSE 147 A MSE 145 ? MET SELENOMETHIONINE 8 A MSE 148 A MSE 146 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA,PQS tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B 2 1,2,3,4 A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 9460 ? 2 MORE -21 ? 2 'SSA (A^2)' 34690 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 108.5100000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_555 -y+1/2,x+1/2,z 0.0000000000 -1.0000000000 0.0000000000 54.2550000000 1.0000000000 0.0000000000 0.0000000000 54.2550000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 4_455 y-1/2,-x+1/2,z 0.0000000000 1.0000000000 0.0000000000 -54.2550000000 -1.0000000000 0.0000000000 0.0000000000 54.2550000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-09-23 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SOLVE phasing . ? 4 RESOLVE phasing . ? 5 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 NH1 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 ARG _pdbx_validate_symm_contact.auth_seq_id_1 35 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 NH1 _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 ARG _pdbx_validate_symm_contact.auth_seq_id_2 35 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 7_555 _pdbx_validate_symm_contact.dist 1.97 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 1 X ? -22.69 -46.23 2 1 ALA A 23 ? ? 58.79 -131.51 3 1 GLU A 34 ? ? -69.55 -130.76 4 1 GLU A 40 ? ? -154.28 84.23 5 1 PRO A 54 ? ? -56.19 176.50 6 1 PRO A 84 ? ? -45.38 172.02 7 1 PRO A 97 ? ? -58.10 -178.51 8 1 MSE A 114 ? ? -67.35 -86.98 9 1 HIS A 125 ? ? -117.90 79.56 10 1 LYS A 147 ? ? -146.91 33.33 11 1 GLU A 151 ? ? -25.85 -40.92 12 1 GLU A 164 ? ? -58.90 109.18 13 1 SER A 181 ? ? -78.10 28.23 14 1 ALA A 186 ? ? -173.78 138.75 15 1 LYS A 191 ? ? 81.87 -8.54 16 1 SER A 223 ? ? -69.82 4.20 17 1 ARG A 226 ? ? -154.43 72.44 18 1 ASN A 227 ? ? 171.05 152.28 19 1 PRO A 228 ? ? -50.17 89.93 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A VAL 231 ? A VAL 233 2 1 Y 1 A PRO 232 ? A PRO 234 3 1 Y 1 A GLU 233 ? A GLU 235 4 1 Y 1 A GLY 234 ? A GLY 236 5 1 Y 1 A TRP 235 ? A TRP 237 6 1 Y 1 A LEU 236 ? A LEU 238 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 237 1 HOH WAT A . B 2 HOH 2 238 2 HOH WAT A . B 2 HOH 3 239 3 HOH WAT A . B 2 HOH 4 240 4 HOH WAT A . B 2 HOH 5 241 5 HOH WAT A . B 2 HOH 6 242 6 HOH WAT A . B 2 HOH 7 243 7 HOH WAT A . B 2 HOH 8 244 8 HOH WAT A . B 2 HOH 9 245 9 HOH WAT A . B 2 HOH 10 246 10 HOH WAT A . B 2 HOH 11 247 11 HOH WAT A . B 2 HOH 12 248 12 HOH WAT A . B 2 HOH 13 249 13 HOH WAT A . B 2 HOH 14 250 14 HOH WAT A . B 2 HOH 15 251 15 HOH WAT A . B 2 HOH 16 252 16 HOH WAT A . B 2 HOH 17 253 17 HOH WAT A . B 2 HOH 18 254 18 HOH WAT A . B 2 HOH 19 255 19 HOH WAT A . B 2 HOH 20 256 20 HOH WAT A . B 2 HOH 21 257 21 HOH WAT A . B 2 HOH 22 258 22 HOH WAT A . B 2 HOH 23 259 23 HOH WAT A . #