data_1Q3M # _entry.id 1Q3M # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1Q3M pdb_00001q3m 10.2210/pdb1q3m/pdb RCSB RCSB019873 ? ? WWPDB D_1000019873 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1Q3M _pdbx_database_status.recvd_initial_deposition_date 2003-07-30 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Dowd, T.L.' 1 'Rosen, J.F.' 2 'Li, L.' 3 'Gundberg, C.M.' 4 # _citation.id primary _citation.title 'The Three-Dimensional Structure of Bovine Calcium Ion-Bound Osteocalcin Using 1H NMR Spectroscopy' _citation.journal_abbrev Biochemistry _citation.journal_volume 42 _citation.page_first 7769 _citation.page_last 7779 _citation.year 2003 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12820886 _citation.pdbx_database_id_DOI 10.1021/bi034470s # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Dowd, T.L.' 1 ? primary 'Rosen, J.F.' 2 ? primary 'Li, L.' 3 ? primary 'Gundberg, C.M.' 4 ? # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description Osteocalcin _entity.formula_weight 5842.354 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Gamma-carboxyglutamic acid-containing protein, Bone Gla-protein, BGP' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'YLDHWLGAPAPYPDPL(CGU)PKR(CGU)VC(CGU)LNPDCDELADHIGFQEAYRRFYGPV' _entity_poly.pdbx_seq_one_letter_code_can YLDHWLGAPAPYPDPLEPKREVCELNPDCDELADHIGFQEAYRRFYGPV _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 TYR n 1 2 LEU n 1 3 ASP n 1 4 HIS n 1 5 TRP n 1 6 LEU n 1 7 GLY n 1 8 ALA n 1 9 PRO n 1 10 ALA n 1 11 PRO n 1 12 TYR n 1 13 PRO n 1 14 ASP n 1 15 PRO n 1 16 LEU n 1 17 CGU n 1 18 PRO n 1 19 LYS n 1 20 ARG n 1 21 CGU n 1 22 VAL n 1 23 CYS n 1 24 CGU n 1 25 LEU n 1 26 ASN n 1 27 PRO n 1 28 ASP n 1 29 CYS n 1 30 ASP n 1 31 GLU n 1 32 LEU n 1 33 ALA n 1 34 ASP n 1 35 HIS n 1 36 ILE n 1 37 GLY n 1 38 PHE n 1 39 GLN n 1 40 GLU n 1 41 ALA n 1 42 TYR n 1 43 ARG n 1 44 ARG n 1 45 PHE n 1 46 TYR n 1 47 GLY n 1 48 PRO n 1 49 VAL n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name cattle _entity_src_nat.pdbx_organism_scientific 'Bos taurus' _entity_src_nat.pdbx_ncbi_taxonomy_id 9913 _entity_src_nat.genus Bos _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details 'Bone powder' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code OSTC_BOVIN _struct_ref.pdbx_db_accession P02820 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code YLDHWLGAPAPYPDPLEPKREVCELNPDCDELADHIGFQEAYRRFYGPV _struct_ref.pdbx_align_begin 52 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1Q3M _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 49 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P02820 _struct_ref_seq.db_align_beg 52 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 100 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 49 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1Q3M CGU A 17 ? UNP P02820 GLU 68 'modified residue' 17 1 1 1Q3M CGU A 21 ? UNP P02820 GLU 72 'modified residue' 21 2 1 1Q3M CGU A 24 ? UNP P02820 GLU 75 'modified residue' 24 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CGU 'L-peptide linking' n 'GAMMA-CARBOXY-GLUTAMIC ACID' ? 'C6 H9 N O6' 191.139 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 COSY 2 1 1 '17 and 60 ms mixing time TOCSYs' 3 1 1 'NOESY (150 ms)' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 310 _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.9 _pdbx_nmr_exptl_sample_conditions.ionic_strength 38 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '20mM NaCl, 6mM Ca(Cl)2, 0.25mM DSS' _pdbx_nmr_sample_details.solvent_system '10% 2H2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model drx600 _pdbx_nmr_spectrometer.field_strength 600 # _pdbx_nmr_refine.entry_id 1Q3M _pdbx_nmr_refine.method 'torsion angle dynamics, simulated annealing and energy minimization' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1Q3M _pdbx_nmr_details.text ;Since the 15 N-terminal residues are unstructured and not constrained, only the structured region of the molecule (residues 16-49) is included in the structure bundle. All of the structures were solved in the presence of 6 mM CaCl2. ; # _pdbx_nmr_ensemble.entry_id 1Q3M _pdbx_nmr_ensemble.conformers_calculated_total_number ? _pdbx_nmr_ensemble.conformers_submitted_total_number 13 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1Q3M _pdbx_nmr_representative.conformer_id 2 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal CNS ? refinement 'Brunger, A.T.' 1 DYANA ? 'structure solution' ? 2 TALOS ? 'data analysis' ? 3 AQUA ? 'data analysis' ? 4 PROCHECK ? 'data analysis' ? 5 # _exptl.entry_id 1Q3M _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1Q3M _struct.title '1H NMR structure bundle of bovine Ca2+-osteocalcin' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1Q3M _struct_keywords.pdbx_keywords 'Calcium-binding protein' _struct_keywords.text 'Bone Protein, calcium binding protein, Calcium-binding protein' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 26 ? GLU A 31 ? ASN A 26 GLU A 31 1 ? 6 HELX_P HELX_P2 2 GLU A 31 ? ILE A 36 ? GLU A 31 ILE A 36 1 ? 6 HELX_P HELX_P3 3 GLN A 39 ? PHE A 45 ? GLN A 39 PHE A 45 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 23 SG ? ? ? 1_555 A CYS 29 SG ? ? A CYS 23 A CYS 29 1_555 ? ? ? ? ? ? ? 2.027 ? ? covale1 covale both ? A LEU 16 C ? ? ? 1_555 A CGU 17 N ? ? A LEU 16 A CGU 17 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale2 covale both ? A CGU 17 C ? ? ? 1_555 A PRO 18 N ? ? A CGU 17 A PRO 18 1_555 ? ? ? ? ? ? ? 1.351 ? ? covale3 covale both ? A ARG 20 C ? ? ? 1_555 A CGU 21 N ? ? A ARG 20 A CGU 21 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale4 covale both ? A CGU 21 C ? ? ? 1_555 A VAL 22 N ? ? A CGU 21 A VAL 22 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale5 covale both ? A CYS 23 C ? ? ? 1_555 A CGU 24 N ? ? A CYS 23 A CGU 24 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale6 covale both ? A CGU 24 C ? ? ? 1_555 A LEU 25 N ? ? A CGU 24 A LEU 25 1_555 ? ? ? ? ? ? ? 1.336 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _database_PDB_matrix.entry_id 1Q3M _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1Q3M _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 TYR 1 1 ? ? ? A . n A 1 2 LEU 2 2 ? ? ? A . n A 1 3 ASP 3 3 ? ? ? A . n A 1 4 HIS 4 4 ? ? ? A . n A 1 5 TRP 5 5 ? ? ? A . n A 1 6 LEU 6 6 ? ? ? A . n A 1 7 GLY 7 7 ? ? ? A . n A 1 8 ALA 8 8 ? ? ? A . n A 1 9 PRO 9 9 ? ? ? A . n A 1 10 ALA 10 10 ? ? ? A . n A 1 11 PRO 11 11 ? ? ? A . n A 1 12 TYR 12 12 ? ? ? A . n A 1 13 PRO 13 13 ? ? ? A . n A 1 14 ASP 14 14 ? ? ? A . n A 1 15 PRO 15 15 ? ? ? A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 CGU 17 17 17 CGU CGU A . n A 1 18 PRO 18 18 18 PRO PRO A . n A 1 19 LYS 19 19 19 LYS LYS A . n A 1 20 ARG 20 20 20 ARG ARG A . n A 1 21 CGU 21 21 21 CGU CGU A . n A 1 22 VAL 22 22 22 VAL VAL A . n A 1 23 CYS 23 23 23 CYS CYS A . n A 1 24 CGU 24 24 24 CGU CGU A . n A 1 25 LEU 25 25 25 LEU LEU A . n A 1 26 ASN 26 26 26 ASN ASN A . n A 1 27 PRO 27 27 27 PRO PRO A . n A 1 28 ASP 28 28 28 ASP ASP A . n A 1 29 CYS 29 29 29 CYS CYS A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 ALA 33 33 33 ALA ALA A . n A 1 34 ASP 34 34 34 ASP ASP A . n A 1 35 HIS 35 35 35 HIS HIS A . n A 1 36 ILE 36 36 36 ILE ILE A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 PHE 38 38 38 PHE PHE A . n A 1 39 GLN 39 39 39 GLN GLN A . n A 1 40 GLU 40 40 40 GLU GLU A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 TYR 42 42 42 TYR TYR A . n A 1 43 ARG 43 43 43 ARG ARG A . n A 1 44 ARG 44 44 44 ARG ARG A . n A 1 45 PHE 45 45 45 PHE PHE A . n A 1 46 TYR 46 46 46 TYR TYR A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 PRO 48 48 48 PRO PRO A . n A 1 49 VAL 49 49 49 VAL VAL A . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A CGU 17 A CGU 17 ? GLU 'GAMMA-CARBOXY-GLUTAMIC ACID' 2 A CGU 21 A CGU 21 ? GLU 'GAMMA-CARBOXY-GLUTAMIC ACID' 3 A CGU 24 A CGU 24 ? GLU 'GAMMA-CARBOXY-GLUTAMIC ACID' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-09-16 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_struct_assembly 3 4 'Structure model' pdbx_struct_oper_list 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_ref_seq_dif.details' # _software.name CNS _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 18 ? ? -54.00 95.73 2 1 ILE A 36 ? ? -146.45 -55.34 3 1 PHE A 38 ? ? -120.00 -73.00 4 1 GLN A 39 ? ? -179.60 -31.47 5 1 TYR A 46 ? ? -138.12 -72.23 6 2 CGU A 17 ? ? 67.59 116.83 7 2 PRO A 18 ? ? -59.67 90.90 8 2 GLU A 40 ? ? -149.24 40.32 9 2 TYR A 46 ? ? -139.80 -74.22 10 2 PRO A 48 ? ? -58.28 104.50 11 3 CGU A 17 ? ? 72.35 149.05 12 3 LYS A 19 ? ? -155.08 44.88 13 3 ARG A 20 ? ? -90.91 36.07 14 3 ILE A 36 ? ? -141.08 -54.02 15 3 TYR A 46 ? ? -139.97 -63.87 16 3 PRO A 48 ? ? -47.43 104.34 17 4 CGU A 17 ? ? 67.61 96.92 18 4 PRO A 18 ? ? -56.07 96.27 19 4 LYS A 19 ? ? -111.66 68.79 20 4 PRO A 27 ? ? -51.64 103.78 21 4 ASP A 28 ? ? -146.57 -53.48 22 4 ILE A 36 ? ? -140.05 -55.20 23 4 TYR A 46 ? ? -140.25 -62.63 24 5 CGU A 17 ? ? 69.95 153.88 25 5 PRO A 18 ? ? -68.58 82.57 26 5 PRO A 27 ? ? -46.04 87.58 27 5 ASP A 28 ? ? -127.70 -58.75 28 5 ILE A 36 ? ? -138.62 -50.79 29 5 TYR A 46 ? ? -142.26 -71.60 30 6 CGU A 17 ? ? 65.59 160.19 31 6 ASP A 28 ? ? -156.22 -66.26 32 6 ALA A 33 ? ? -84.18 46.63 33 6 ASP A 34 ? ? -131.64 -55.74 34 6 ILE A 36 ? ? -134.38 -43.98 35 6 TYR A 46 ? ? -141.41 -64.94 36 7 PRO A 18 ? ? -46.10 91.78 37 7 TYR A 46 ? ? -138.50 -67.54 38 8 CGU A 17 ? ? 51.45 161.07 39 8 ILE A 36 ? ? -146.78 -56.78 40 8 PHE A 38 ? ? -109.81 -89.76 41 8 GLN A 39 ? ? -172.23 43.17 42 8 TYR A 46 ? ? -139.58 -63.64 43 9 CGU A 17 ? ? 72.02 112.95 44 9 PRO A 18 ? ? -68.87 90.62 45 9 LYS A 19 ? ? -145.48 30.20 46 9 GLU A 31 ? ? -94.52 49.38 47 9 ILE A 36 ? ? -144.25 -55.17 48 9 PHE A 38 ? ? -116.16 -84.39 49 9 GLN A 39 ? ? 170.59 -33.94 50 9 TYR A 46 ? ? -138.68 -72.67 51 10 CGU A 17 ? ? 71.74 155.48 52 10 LYS A 19 ? ? -142.06 26.32 53 10 HIS A 35 ? ? -154.46 -42.48 54 10 ILE A 36 ? ? -102.48 58.98 55 10 TYR A 46 ? ? -139.80 -63.11 56 11 CGU A 17 ? ? 50.75 164.17 57 11 LYS A 19 ? ? -150.56 32.77 58 11 ILE A 36 ? ? -142.04 -55.91 59 11 TYR A 46 ? ? -138.47 -68.03 60 12 CGU A 17 ? ? 65.27 130.93 61 12 ARG A 20 ? ? -96.95 33.67 62 12 PRO A 27 ? ? -53.49 106.95 63 12 ASP A 28 ? ? -159.56 -57.88 64 12 ILE A 36 ? ? -143.79 -56.93 65 12 PHE A 38 ? ? -117.72 -90.89 66 12 GLN A 39 ? ? -174.79 40.39 67 12 TYR A 46 ? ? -142.79 -62.82 68 13 CGU A 17 ? ? 68.50 145.81 69 13 PRO A 18 ? ? -66.28 85.47 70 13 ARG A 20 ? ? -93.26 34.33 71 13 ILE A 36 ? ? -141.73 -54.99 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A TYR 1 ? A TYR 1 2 1 Y 1 A LEU 2 ? A LEU 2 3 1 Y 1 A ASP 3 ? A ASP 3 4 1 Y 1 A HIS 4 ? A HIS 4 5 1 Y 1 A TRP 5 ? A TRP 5 6 1 Y 1 A LEU 6 ? A LEU 6 7 1 Y 1 A GLY 7 ? A GLY 7 8 1 Y 1 A ALA 8 ? A ALA 8 9 1 Y 1 A PRO 9 ? A PRO 9 10 1 Y 1 A ALA 10 ? A ALA 10 11 1 Y 1 A PRO 11 ? A PRO 11 12 1 Y 1 A TYR 12 ? A TYR 12 13 1 Y 1 A PRO 13 ? A PRO 13 14 1 Y 1 A ASP 14 ? A ASP 14 15 1 Y 1 A PRO 15 ? A PRO 15 16 2 Y 1 A TYR 1 ? A TYR 1 17 2 Y 1 A LEU 2 ? A LEU 2 18 2 Y 1 A ASP 3 ? A ASP 3 19 2 Y 1 A HIS 4 ? A HIS 4 20 2 Y 1 A TRP 5 ? A TRP 5 21 2 Y 1 A LEU 6 ? A LEU 6 22 2 Y 1 A GLY 7 ? A GLY 7 23 2 Y 1 A ALA 8 ? A ALA 8 24 2 Y 1 A PRO 9 ? A PRO 9 25 2 Y 1 A ALA 10 ? A ALA 10 26 2 Y 1 A PRO 11 ? A PRO 11 27 2 Y 1 A TYR 12 ? A TYR 12 28 2 Y 1 A PRO 13 ? A PRO 13 29 2 Y 1 A ASP 14 ? A ASP 14 30 2 Y 1 A PRO 15 ? A PRO 15 31 3 Y 1 A TYR 1 ? A TYR 1 32 3 Y 1 A LEU 2 ? A LEU 2 33 3 Y 1 A ASP 3 ? A ASP 3 34 3 Y 1 A HIS 4 ? A HIS 4 35 3 Y 1 A TRP 5 ? A TRP 5 36 3 Y 1 A LEU 6 ? A LEU 6 37 3 Y 1 A GLY 7 ? A GLY 7 38 3 Y 1 A ALA 8 ? A ALA 8 39 3 Y 1 A PRO 9 ? A PRO 9 40 3 Y 1 A ALA 10 ? A ALA 10 41 3 Y 1 A PRO 11 ? A PRO 11 42 3 Y 1 A TYR 12 ? A TYR 12 43 3 Y 1 A PRO 13 ? A PRO 13 44 3 Y 1 A ASP 14 ? A ASP 14 45 3 Y 1 A PRO 15 ? A PRO 15 46 4 Y 1 A TYR 1 ? A TYR 1 47 4 Y 1 A LEU 2 ? A LEU 2 48 4 Y 1 A ASP 3 ? A ASP 3 49 4 Y 1 A HIS 4 ? A HIS 4 50 4 Y 1 A TRP 5 ? A TRP 5 51 4 Y 1 A LEU 6 ? A LEU 6 52 4 Y 1 A GLY 7 ? A GLY 7 53 4 Y 1 A ALA 8 ? A ALA 8 54 4 Y 1 A PRO 9 ? A PRO 9 55 4 Y 1 A ALA 10 ? A ALA 10 56 4 Y 1 A PRO 11 ? A PRO 11 57 4 Y 1 A TYR 12 ? A TYR 12 58 4 Y 1 A PRO 13 ? A PRO 13 59 4 Y 1 A ASP 14 ? A ASP 14 60 4 Y 1 A PRO 15 ? A PRO 15 61 5 Y 1 A TYR 1 ? A TYR 1 62 5 Y 1 A LEU 2 ? A LEU 2 63 5 Y 1 A ASP 3 ? A ASP 3 64 5 Y 1 A HIS 4 ? A HIS 4 65 5 Y 1 A TRP 5 ? A TRP 5 66 5 Y 1 A LEU 6 ? A LEU 6 67 5 Y 1 A GLY 7 ? A GLY 7 68 5 Y 1 A ALA 8 ? A ALA 8 69 5 Y 1 A PRO 9 ? A PRO 9 70 5 Y 1 A ALA 10 ? A ALA 10 71 5 Y 1 A PRO 11 ? A PRO 11 72 5 Y 1 A TYR 12 ? A TYR 12 73 5 Y 1 A PRO 13 ? A PRO 13 74 5 Y 1 A ASP 14 ? A ASP 14 75 5 Y 1 A PRO 15 ? A PRO 15 76 6 Y 1 A TYR 1 ? A TYR 1 77 6 Y 1 A LEU 2 ? A LEU 2 78 6 Y 1 A ASP 3 ? A ASP 3 79 6 Y 1 A HIS 4 ? A HIS 4 80 6 Y 1 A TRP 5 ? A TRP 5 81 6 Y 1 A LEU 6 ? A LEU 6 82 6 Y 1 A GLY 7 ? A GLY 7 83 6 Y 1 A ALA 8 ? A ALA 8 84 6 Y 1 A PRO 9 ? A PRO 9 85 6 Y 1 A ALA 10 ? A ALA 10 86 6 Y 1 A PRO 11 ? A PRO 11 87 6 Y 1 A TYR 12 ? A TYR 12 88 6 Y 1 A PRO 13 ? A PRO 13 89 6 Y 1 A ASP 14 ? A ASP 14 90 6 Y 1 A PRO 15 ? A PRO 15 91 7 Y 1 A TYR 1 ? A TYR 1 92 7 Y 1 A LEU 2 ? A LEU 2 93 7 Y 1 A ASP 3 ? A ASP 3 94 7 Y 1 A HIS 4 ? A HIS 4 95 7 Y 1 A TRP 5 ? A TRP 5 96 7 Y 1 A LEU 6 ? A LEU 6 97 7 Y 1 A GLY 7 ? A GLY 7 98 7 Y 1 A ALA 8 ? A ALA 8 99 7 Y 1 A PRO 9 ? A PRO 9 100 7 Y 1 A ALA 10 ? A ALA 10 101 7 Y 1 A PRO 11 ? A PRO 11 102 7 Y 1 A TYR 12 ? A TYR 12 103 7 Y 1 A PRO 13 ? A PRO 13 104 7 Y 1 A ASP 14 ? A ASP 14 105 7 Y 1 A PRO 15 ? A PRO 15 106 8 Y 1 A TYR 1 ? A TYR 1 107 8 Y 1 A LEU 2 ? A LEU 2 108 8 Y 1 A ASP 3 ? A ASP 3 109 8 Y 1 A HIS 4 ? A HIS 4 110 8 Y 1 A TRP 5 ? A TRP 5 111 8 Y 1 A LEU 6 ? A LEU 6 112 8 Y 1 A GLY 7 ? A GLY 7 113 8 Y 1 A ALA 8 ? A ALA 8 114 8 Y 1 A PRO 9 ? A PRO 9 115 8 Y 1 A ALA 10 ? A ALA 10 116 8 Y 1 A PRO 11 ? A PRO 11 117 8 Y 1 A TYR 12 ? A TYR 12 118 8 Y 1 A PRO 13 ? A PRO 13 119 8 Y 1 A ASP 14 ? A ASP 14 120 8 Y 1 A PRO 15 ? A PRO 15 121 9 Y 1 A TYR 1 ? A TYR 1 122 9 Y 1 A LEU 2 ? A LEU 2 123 9 Y 1 A ASP 3 ? A ASP 3 124 9 Y 1 A HIS 4 ? A HIS 4 125 9 Y 1 A TRP 5 ? A TRP 5 126 9 Y 1 A LEU 6 ? A LEU 6 127 9 Y 1 A GLY 7 ? A GLY 7 128 9 Y 1 A ALA 8 ? A ALA 8 129 9 Y 1 A PRO 9 ? A PRO 9 130 9 Y 1 A ALA 10 ? A ALA 10 131 9 Y 1 A PRO 11 ? A PRO 11 132 9 Y 1 A TYR 12 ? A TYR 12 133 9 Y 1 A PRO 13 ? A PRO 13 134 9 Y 1 A ASP 14 ? A ASP 14 135 9 Y 1 A PRO 15 ? A PRO 15 136 10 Y 1 A TYR 1 ? A TYR 1 137 10 Y 1 A LEU 2 ? A LEU 2 138 10 Y 1 A ASP 3 ? A ASP 3 139 10 Y 1 A HIS 4 ? A HIS 4 140 10 Y 1 A TRP 5 ? A TRP 5 141 10 Y 1 A LEU 6 ? A LEU 6 142 10 Y 1 A GLY 7 ? A GLY 7 143 10 Y 1 A ALA 8 ? A ALA 8 144 10 Y 1 A PRO 9 ? A PRO 9 145 10 Y 1 A ALA 10 ? A ALA 10 146 10 Y 1 A PRO 11 ? A PRO 11 147 10 Y 1 A TYR 12 ? A TYR 12 148 10 Y 1 A PRO 13 ? A PRO 13 149 10 Y 1 A ASP 14 ? A ASP 14 150 10 Y 1 A PRO 15 ? A PRO 15 151 11 Y 1 A TYR 1 ? A TYR 1 152 11 Y 1 A LEU 2 ? A LEU 2 153 11 Y 1 A ASP 3 ? A ASP 3 154 11 Y 1 A HIS 4 ? A HIS 4 155 11 Y 1 A TRP 5 ? A TRP 5 156 11 Y 1 A LEU 6 ? A LEU 6 157 11 Y 1 A GLY 7 ? A GLY 7 158 11 Y 1 A ALA 8 ? A ALA 8 159 11 Y 1 A PRO 9 ? A PRO 9 160 11 Y 1 A ALA 10 ? A ALA 10 161 11 Y 1 A PRO 11 ? A PRO 11 162 11 Y 1 A TYR 12 ? A TYR 12 163 11 Y 1 A PRO 13 ? A PRO 13 164 11 Y 1 A ASP 14 ? A ASP 14 165 11 Y 1 A PRO 15 ? A PRO 15 166 12 Y 1 A TYR 1 ? A TYR 1 167 12 Y 1 A LEU 2 ? A LEU 2 168 12 Y 1 A ASP 3 ? A ASP 3 169 12 Y 1 A HIS 4 ? A HIS 4 170 12 Y 1 A TRP 5 ? A TRP 5 171 12 Y 1 A LEU 6 ? A LEU 6 172 12 Y 1 A GLY 7 ? A GLY 7 173 12 Y 1 A ALA 8 ? A ALA 8 174 12 Y 1 A PRO 9 ? A PRO 9 175 12 Y 1 A ALA 10 ? A ALA 10 176 12 Y 1 A PRO 11 ? A PRO 11 177 12 Y 1 A TYR 12 ? A TYR 12 178 12 Y 1 A PRO 13 ? A PRO 13 179 12 Y 1 A ASP 14 ? A ASP 14 180 12 Y 1 A PRO 15 ? A PRO 15 181 13 Y 1 A TYR 1 ? A TYR 1 182 13 Y 1 A LEU 2 ? A LEU 2 183 13 Y 1 A ASP 3 ? A ASP 3 184 13 Y 1 A HIS 4 ? A HIS 4 185 13 Y 1 A TRP 5 ? A TRP 5 186 13 Y 1 A LEU 6 ? A LEU 6 187 13 Y 1 A GLY 7 ? A GLY 7 188 13 Y 1 A ALA 8 ? A ALA 8 189 13 Y 1 A PRO 9 ? A PRO 9 190 13 Y 1 A ALA 10 ? A ALA 10 191 13 Y 1 A PRO 11 ? A PRO 11 192 13 Y 1 A TYR 12 ? A TYR 12 193 13 Y 1 A PRO 13 ? A PRO 13 194 13 Y 1 A ASP 14 ? A ASP 14 195 13 Y 1 A PRO 15 ? A PRO 15 #