data_1QFI # _entry.id 1QFI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1QFI pdb_00001qfi 10.2210/pdb1qfi/pdb RCSB RCSB000828 ? ? WWPDB D_1000000828 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1A7Z unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN Z3' PDB 209D unspecified 'CRYSTAL STRUCTURE OF N8-ACTINOMYCIN D COMPLEXED WITH D(GAAGCTTC)2' PDB 1UNM unspecified 'CRYSTAL STRUCTURE OF 7-AMINOACTINOMYCIN D COMPLEXED WITH NON-COMPLEMENTARY DNA' PDB 1I3W unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (CGATCGATCG)2' PDB 1A7Y unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN D' PDB 1FJA unspecified 'SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (AAGCGCTT)2' PDB 173D unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2' PDB 2D55 unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2' PDB 1DSC unspecified 'SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2' PDB 1L1V unspecified 'SOLUTION STRUCTURE OF ACTNIOMYCIN D COMPLEXED WITH MISMATCHED DNA (GTCACCGAC)' PDB 316D unspecified 'CRYSTAL STRUCTURE OF F8-ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2' PDB 1DSD unspecified 'SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GATGCTTC)2' PDB 1MNV unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (ATGCTGCAT)2' PDB 1UNJ unspecified 'CRYSTAL STRUCTURE OF 7-AMINO-ACTINOMYCIN D COMPLEXED WITH A NON-COMPLEMENTARY DNA (TTAGT)2' PDB 1OVF unspecified 'SOLUTIOM STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (CCGTTTTGTGG)2' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1QFI _pdbx_database_status.recvd_initial_deposition_date 1999-04-12 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lifferth, A.' 1 'Bahner, I.' 2 'Lackner, H.' 3 'Schaefer, M.' 4 # _citation.id primary _citation.title 'Synthesis and Structure of Proline Ring Modified Actinomycins of the X-Type' _citation.journal_abbrev Z.Naturforsch. _citation.journal_volume 54 _citation.page_first 681 _citation.page_last ? _citation.year 1999 _citation.journal_id_ASTM ? _citation.country GE _citation.journal_id_ISSN 0341-0382 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lifferth, A.' 1 ? primary 'Bahner, I.' 2 ? primary 'Lackner, H.' 3 ? primary 'Schaefer, M.' 4 ? # _cell.entry_id 1QFI _cell.length_a 15.594 _cell.length_b 16.009 _cell.length_c 25.322 _cell.angle_alpha 86.23 _cell.angle_beta 85.16 _cell.angle_gamma 69.65 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QFI _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'ACTINOMYCIN X2' 1273.431 3 ? ? ? ? 2 non-polymer syn 'ETHYL ACETATE' 88.105 7 ? ? ? ? 3 non-polymer syn METHANOL 32.042 5 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'ACTINOMYCIN V' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'T(DVA)(DPL)(SAR)(MVA)(PXZ)T(DVA)P(SAR)(MVA)' _entity_poly.pdbx_seq_one_letter_code_can TVPGVXTVPGV _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 DVA n 1 3 DPL n 1 4 SAR n 1 5 MVA n 1 6 PXZ n 1 7 THR n 1 8 DVA n 1 9 PRO n 1 10 SAR n 1 11 MVA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'STREPTOMYCES ANTIBIOTICUS' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 1890 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name NOR _struct_ref.db_code NOR00232 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession NOR00232 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1QFI A 1 ? 11 ? NOR00232 1 ? 11 ? 1 11 2 1 1QFI B 1 ? 11 ? NOR00232 1 ? 11 ? 1 11 3 1 1QFI C 1 ? 11 ? NOR00232 1 ? 11 ? 1 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DPL 'L-peptide linking' n 4-OXOPROLINE ? 'C5 H7 N O3' 129.114 DVA 'D-peptide linking' . D-VALINE ? 'C5 H11 N O2' 117.146 EEE non-polymer . 'ETHYL ACETATE' ? 'C4 H8 O2' 88.105 MOH non-polymer . METHANOL ? 'C H4 O' 32.042 MVA 'L-peptide linking' n N-METHYLVALINE ? 'C6 H13 N O2' 131.173 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 PXZ non-polymer . 2-AMINO-1,9-DICARBONYL-4,6-DIMETHYL-10-DEHYDRO-PHENOXAZIN-3-ONE PHENOXAZINE 'C16 H12 N2 O4' 296.277 SAR 'peptide linking' n SARCOSINE ? 'C3 H7 N O2' 89.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 # _exptl.entry_id 1QFI _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.12 _exptl_crystal.density_percent_sol 20.37 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.00 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'PH 5.00' # _diffrn.id 1 _diffrn.ambient_temp 153.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type 'SIEMENS HI-STAR' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54178 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type SIEMENS _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.54178 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1QFI _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 25.150 _reflns.d_resolution_high 0.910 _reflns.number_obs 15506 _reflns.number_all ? _reflns.percent_possible_obs 94.2 _reflns.pdbx_Rmerge_I_obs 0.04700 _reflns.pdbx_Rsym_value 0.01500 _reflns.pdbx_netI_over_sigmaI 43.4000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.300 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 0.91 _reflns_shell.d_res_low 1.00 _reflns_shell.percent_possible_all 82.9 _reflns_shell.Rmerge_I_obs 0.11500 _reflns_shell.pdbx_Rsym_value 0.06600 _reflns_shell.meanI_over_sigI_obs 14.700 _reflns_shell.pdbx_redundancy 3.30 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1QFI _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all 15506 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 25.15 _refine.ls_d_res_high 0.91 _refine.ls_percent_reflns_obs 94.2 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all 0.065 _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters 2994 _refine.ls_number_restraints 3955 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'DIRECT METHODS' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH AND HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 1QFI _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 9 _refine_analyze.occupancy_sum_hydrogen 307.60 _refine_analyze.occupancy_sum_non_hydrogen 310.80 # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 273 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 52 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 325 _refine_hist.d_res_high 0.91 _refine_hist.d_res_low 25.15 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.019 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.027 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.124 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.005 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.030 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.056 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 1QFI _pdbx_refine.R_factor_all_no_cutoff 0.065 _pdbx_refine.R_factor_obs_no_cutoff ? _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff 0.062 _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff 14554 # _struct.entry_id 1QFI _struct.title 'SYNTHESIS AND STRUCTURE OF PROLINE RING MODIFIED ACTINOMYCINS OF X TYPE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1QFI _struct_keywords.pdbx_keywords ANTIBIOTIC _struct_keywords.text 'ACTINOMYCIN, ANTICANCER, ANTITUMOR, CHROMOPHORE, DEPSIPEPTIDE, ANTIBIOTIC' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 2 ? K N N 3 ? L N N 2 ? M N N 3 ? N N N 3 ? O N N 3 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A THR 1 C ? ? ? 1_555 A DVA 2 N ? ? A THR 1 A DVA 2 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale2 covale one ? A THR 1 OG1 ? ? ? 1_555 A MVA 5 C ? ? A THR 1 A MVA 5 1_555 ? ? ? ? ? ? ? 1.352 ? ? covale3 covale one ? A THR 1 N ? ? ? 1_555 A PXZ 6 C0 ? ? A THR 1 A PXZ 6 1_555 ? ? ? ? ? ? ? 1.357 ? ? covale4 covale both ? A DVA 2 C ? ? ? 1_555 A DPL 3 N ? ? A DVA 2 A DPL 3 1_555 ? ? ? ? ? ? ? 1.347 ? ? covale5 covale both ? A DPL 3 C ? ? ? 1_555 A SAR 4 N ? ? A DPL 3 A SAR 4 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale6 covale both ? A SAR 4 C ? ? ? 1_555 A MVA 5 N ? ? A SAR 4 A MVA 5 1_555 ? ? ? ? ? ? ? 1.346 ? ? covale7 covale one ? A PXZ 6 "C0'" ? ? ? 1_555 A THR 7 N ? ? A PXZ 6 A THR 7 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale8 covale both ? A THR 7 C ? ? ? 1_555 A DVA 8 N ? ? A THR 7 A DVA 8 1_555 ? ? ? ? ? ? ? 1.360 ? ? covale9 covale one ? A THR 7 OG1 ? ? ? 1_555 A MVA 11 C ? ? A THR 7 A MVA 11 1_555 ? ? ? ? ? ? ? 1.349 ? ? covale10 covale both ? A DVA 8 C ? ? ? 1_555 A PRO 9 N ? ? A DVA 8 A PRO 9 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale11 covale both ? A PRO 9 C ? ? ? 1_555 A SAR 10 N ? ? A PRO 9 A SAR 10 1_555 ? ? ? ? ? ? ? 1.346 ? ? covale12 covale both ? A SAR 10 C ? ? ? 1_555 A MVA 11 N ? ? A SAR 10 A MVA 11 1_555 ? ? ? ? ? ? ? 1.346 ? ? covale13 covale both ? B THR 1 C ? ? ? 1_555 B DVA 2 N ? ? B THR 1 B DVA 2 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale14 covale one ? B THR 1 OG1 ? ? ? 1_555 B MVA 5 C ? ? B THR 1 B MVA 5 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale15 covale one ? B THR 1 N ? ? ? 1_555 B PXZ 6 C0 ? ? B THR 1 B PXZ 6 1_555 ? ? ? ? ? ? ? 1.356 ? ? covale16 covale both ? B DVA 2 C ? ? ? 1_555 B DPL 3 N ? ? B DVA 2 B DPL 3 1_555 ? ? ? ? ? ? ? 1.350 ? ? covale17 covale both ? B DPL 3 C ? ? ? 1_555 B SAR 4 N ? ? B DPL 3 B SAR 4 1_555 ? ? ? ? ? ? ? 1.348 ? ? covale18 covale both ? B SAR 4 C ? ? ? 1_555 B MVA 5 N ? ? B SAR 4 B MVA 5 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale19 covale one ? B PXZ 6 "C0'" ? ? ? 1_555 B THR 7 N ? ? B PXZ 6 B THR 7 1_555 ? ? ? ? ? ? ? 1.352 ? ? covale20 covale both ? B THR 7 C ? ? ? 1_555 B DVA 8 N ? ? B THR 7 B DVA 8 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale21 covale one ? B THR 7 OG1 ? ? ? 1_555 B MVA 11 C ? ? B THR 7 B MVA 11 1_555 ? ? ? ? ? ? ? 1.346 ? ? covale22 covale both ? B DVA 8 C ? ? ? 1_555 B PRO 9 N ? ? B DVA 8 B PRO 9 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale23 covale both ? B PRO 9 C ? ? ? 1_555 B SAR 10 N ? ? B PRO 9 B SAR 10 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale24 covale both ? B SAR 10 C ? ? ? 1_555 B MVA 11 N ? ? B SAR 10 B MVA 11 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale25 covale both ? C THR 1 C ? ? ? 1_555 C DVA 2 N ? ? C THR 1 C DVA 2 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale26 covale one ? C THR 1 OG1 ? ? ? 1_555 C MVA 5 C ? ? C THR 1 C MVA 5 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale27 covale one ? C THR 1 N ? ? ? 1_555 C PXZ 6 C0 ? ? C THR 1 C PXZ 6 1_555 ? ? ? ? ? ? ? 1.352 ? ? covale28 covale both ? C DVA 2 C ? ? ? 1_555 C DPL 3 N ? ? C DVA 2 C DPL 3 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale29 covale both ? C DPL 3 C ? ? ? 1_555 C SAR 4 N ? ? C DPL 3 C SAR 4 1_555 ? ? ? ? ? ? ? 1.358 ? ? covale30 covale both ? C SAR 4 C ? ? ? 1_555 C MVA 5 N ? ? C SAR 4 C MVA 5 1_555 ? ? ? ? ? ? ? 1.361 ? ? covale31 covale one ? C PXZ 6 "C0'" ? ? ? 1_555 C THR 7 N ? ? C PXZ 6 C THR 7 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale32 covale both ? C THR 7 C ? ? ? 1_555 C DVA 8 N ? ? C THR 7 C DVA 8 1_555 ? ? ? ? ? ? ? 1.358 ? ? covale33 covale one ? C THR 7 OG1 ? ? ? 1_555 C MVA 11 C ? ? C THR 7 C MVA 11 1_555 ? ? ? ? ? ? ? 1.353 ? ? covale34 covale both ? C DVA 8 C ? ? ? 1_555 C PRO 9 N ? ? C DVA 8 C PRO 9 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale35 covale both ? C PRO 9 C ? ? ? 1_555 C SAR 10 N ? ? C PRO 9 C SAR 10 1_555 ? ? ? ? ? ? ? 1.348 ? ? covale36 covale both ? C SAR 10 C ? ? ? 1_555 C MVA 11 N ? ? C SAR 10 C MVA 11 1_555 ? ? ? ? ? ? ? 1.342 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 DVA 2 A . ? DVA 2 A DPL 3 A ? DPL 3 A 1 12.34 2 DPL 3 A . ? DPL 3 A SAR 4 A ? SAR 4 A 1 5.47 3 DVA 8 A . ? DVA 8 A PRO 9 A ? PRO 9 A 1 20.19 4 PRO 9 A . ? PRO 9 A SAR 10 A ? SAR 10 A 1 -13.49 5 DVA 2 B . ? DVA 2 B DPL 3 B ? DPL 3 B 1 14.18 6 DPL 3 B . ? DPL 3 B SAR 4 B ? SAR 4 B 1 -8.76 7 DVA 8 B . ? DVA 8 B PRO 9 B ? PRO 9 B 1 21.75 8 PRO 9 B . ? PRO 9 B SAR 10 B ? SAR 10 B 1 -6.92 9 DVA 2 C . ? DVA 2 C DPL 3 C ? DPL 3 C 1 14.94 10 DPL 3 C . ? DPL 3 C SAR 4 C ? SAR 4 C 1 -12.58 11 DVA 8 C . ? DVA 8 C PRO 9 C ? PRO 9 C 1 13.27 12 PRO 9 C . ? PRO 9 C SAR 10 C ? SAR 10 C 1 -4.65 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A EEE 34 ? 6 'BINDING SITE FOR RESIDUE EEE A 34' AC2 Software A EEE 35 ? 6 'BINDING SITE FOR RESIDUE EEE A 35' AC3 Software A EEE 37 ? 3 'BINDING SITE FOR RESIDUE EEE A 37' AC4 Software A EEE 38 ? 6 'BINDING SITE FOR RESIDUE EEE A 38' AC5 Software A EEE 40 ? 6 'BINDING SITE FOR RESIDUE EEE A 40' AC6 Software C EEE 36 ? 4 'BINDING SITE FOR RESIDUE EEE C 36' AC7 Software C EEE 41 ? 5 'BINDING SITE FOR RESIDUE EEE C 41' AC8 Software ? ? ? ? 19 'BINDING SITE FOR CHAIN A OF ACTINOMYCIN X2' AC9 Software ? ? ? ? 21 'BINDING SITE FOR CHAIN B OF ACTINOMYCIN X2' BC1 Software ? ? ? ? 21 'BINDING SITE FOR CHAIN C OF ACTINOMYCIN X2' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 THR A 1 ? THR A 1 . ? 1_565 ? 2 AC1 6 THR A 7 ? THR A 7 . ? 1_555 ? 3 AC1 6 EEE E . ? EEE A 35 . ? 1_555 ? 4 AC1 6 EEE F . ? EEE A 37 . ? 1_555 ? 5 AC1 6 SAR B 10 ? SAR B 10 . ? 1_565 ? 6 AC1 6 EEE J . ? EEE C 36 . ? 1_455 ? 7 AC2 6 DVA A 8 ? DVA A 8 . ? 1_465 ? 8 AC2 6 EEE D . ? EEE A 34 . ? 1_555 ? 9 AC2 6 EEE G . ? EEE A 38 . ? 1_455 ? 10 AC2 6 DVA C 2 ? DVA C 2 . ? 1_465 ? 11 AC2 6 DPL C 3 ? DPL C 3 . ? 1_465 ? 12 AC2 6 EEE J . ? EEE C 36 . ? 1_455 ? 13 AC3 3 MVA A 5 ? MVA A 5 . ? 1_565 ? 14 AC3 3 EEE D . ? EEE A 34 . ? 1_555 ? 15 AC3 3 MVA C 5 ? MVA C 5 . ? 1_555 ? 16 AC4 6 DVA A 2 ? DVA A 2 . ? 1_565 ? 17 AC4 6 THR A 7 ? THR A 7 . ? 1_555 ? 18 AC4 6 PRO A 9 ? PRO A 9 . ? 1_565 ? 19 AC4 6 MVA A 11 ? MVA A 11 . ? 1_555 ? 20 AC4 6 EEE E . ? EEE A 35 . ? 1_655 ? 21 AC4 6 MVA C 5 ? MVA C 5 . ? 1_555 ? 22 AC5 6 DPL A 3 ? DPL A 3 . ? 1_555 ? 23 AC5 6 DPL B 3 ? DPL B 3 . ? 1_564 ? 24 AC5 6 THR C 1 ? THR C 1 . ? 1_455 ? 25 AC5 6 PXZ C 6 ? PXZ C 6 . ? 1_455 ? 26 AC5 6 PXZ C 6 ? PXZ C 6 . ? 1_555 ? 27 AC5 6 EEE L . ? EEE C 41 . ? 1_555 ? 28 AC6 4 DPL A 3 ? DPL A 3 . ? 1_655 ? 29 AC6 4 EEE D . ? EEE A 34 . ? 1_655 ? 30 AC6 4 EEE E . ? EEE A 35 . ? 1_655 ? 31 AC6 4 MVA C 5 ? MVA C 5 . ? 1_555 ? 32 AC7 5 EEE H . ? EEE A 40 . ? 1_555 ? 33 AC7 5 MVA B 5 ? MVA B 5 . ? 1_554 ? 34 AC7 5 DPL C 3 ? DPL C 3 . ? 1_555 ? 35 AC7 5 THR C 7 ? THR C 7 . ? 1_555 ? 36 AC7 5 PRO C 9 ? PRO C 9 . ? 1_455 ? 37 AC8 19 EEE D . ? EEE A 34 . ? 1_545 ? 38 AC8 19 EEE D . ? EEE A 34 . ? 1_555 ? 39 AC8 19 EEE E . ? EEE A 35 . ? 1_645 ? 40 AC8 19 EEE F . ? EEE A 37 . ? 1_545 ? 41 AC8 19 EEE G . ? EEE A 38 . ? 1_545 ? 42 AC8 19 EEE G . ? EEE A 38 . ? 1_555 ? 43 AC8 19 EEE H . ? EEE A 40 . ? 1_555 ? 44 AC8 19 PXZ B 6 ? PXZ B 6 . ? 1_655 ? 45 AC8 19 PXZ B 6 ? PXZ B 6 . ? 1_555 ? 46 AC8 19 THR B 7 ? THR B 7 . ? 1_555 ? 47 AC8 19 PRO B 9 ? PRO B 9 . ? 1_565 ? 48 AC8 19 PRO B 9 ? PRO B 9 . ? 1_555 ? 49 AC8 19 MVA B 11 ? MVA B 11 . ? 1_565 ? 50 AC8 19 MVA B 11 ? MVA B 11 . ? 1_655 ? 51 AC8 19 DPL C 3 ? DPL C 3 . ? 1_555 ? 52 AC8 19 SAR C 4 ? SAR C 4 . ? 1_555 ? 53 AC8 19 MVA C 5 ? MVA C 5 . ? 1_455 ? 54 AC8 19 PXZ C 6 ? PXZ C 6 . ? 1_545 ? 55 AC8 19 EEE J . ? EEE C 36 . ? 1_455 ? 56 AC9 21 THR A 1 ? THR A 1 . ? 1_555 ? 57 AC9 21 PXZ A 6 ? PXZ A 6 . ? 1_545 ? 58 AC9 21 PXZ A 6 ? PXZ A 6 . ? 1_555 ? 59 AC9 21 THR A 7 ? THR A 7 . ? 1_555 ? 60 AC9 21 PRO A 9 ? PRO A 9 . ? 1_455 ? 61 AC9 21 PRO A 9 ? PRO A 9 . ? 1_555 ? 62 AC9 21 MVA A 11 ? MVA A 11 . ? 1_555 ? 63 AC9 21 MVA A 11 ? MVA A 11 . ? 1_455 ? 64 AC9 21 MVA A 11 ? MVA A 11 . ? 1_545 ? 65 AC9 21 EEE D . ? EEE A 34 . ? 1_545 ? 66 AC9 21 EEE H . ? EEE A 40 . ? 1_546 ? 67 AC9 21 DVA C 2 ? DVA C 2 . ? 1_456 ? 68 AC9 21 PXZ C 6 ? PXZ C 6 . ? 1_446 ? 69 AC9 21 DVA C 8 ? DVA C 8 . ? 1_456 ? 70 AC9 21 PRO C 9 ? PRO C 9 . ? 1_446 ? 71 AC9 21 SAR C 10 ? SAR C 10 . ? 1_446 ? 72 AC9 21 SAR C 10 ? SAR C 10 . ? 1_456 ? 73 AC9 21 MVA C 11 ? MVA C 11 . ? 1_456 ? 74 AC9 21 MVA C 11 ? MVA C 11 . ? 1_446 ? 75 AC9 21 MVA C 11 ? MVA C 11 . ? 1_546 ? 76 AC9 21 EEE L . ? EEE C 41 . ? 1_556 ? 77 BC1 21 DVA A 2 ? DVA A 2 . ? 1_555 ? 78 BC1 21 DPL A 3 ? DPL A 3 . ? 1_555 ? 79 BC1 21 SAR A 4 ? SAR A 4 . ? 1_655 ? 80 BC1 21 SAR A 4 ? SAR A 4 . ? 1_565 ? 81 BC1 21 PXZ A 6 ? PXZ A 6 . ? 1_655 ? 82 BC1 21 EEE E . ? EEE A 35 . ? 1_645 ? 83 BC1 21 EEE F . ? EEE A 37 . ? 1_555 ? 84 BC1 21 EEE G . ? EEE A 38 . ? 1_555 ? 85 BC1 21 EEE H . ? EEE A 40 . ? 1_655 ? 86 BC1 21 EEE H . ? EEE A 40 . ? 1_555 ? 87 BC1 21 DVA B 2 ? DVA B 2 . ? 1_664 ? 88 BC1 21 DPL B 3 ? DPL B 3 . ? 1_664 ? 89 BC1 21 DPL B 3 ? DPL B 3 . ? 1_654 ? 90 BC1 21 MVA B 5 ? MVA B 5 . ? 1_564 ? 91 BC1 21 PXZ B 6 ? PXZ B 6 . ? 1_654 ? 92 BC1 21 DVA B 8 ? DVA B 8 . ? 1_664 ? 93 BC1 21 DVA B 8 ? DVA B 8 . ? 1_564 ? 94 BC1 21 MVA B 11 ? MVA B 11 . ? 1_664 ? 95 BC1 21 EEE J . ? EEE C 36 . ? 1_555 ? 96 BC1 21 EEE L . ? EEE C 41 . ? 1_655 ? 97 BC1 21 EEE L . ? EEE C 41 . ? 1_555 ? # _database_PDB_matrix.entry_id 1QFI _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1QFI _atom_sites.fract_transf_matrix[1][1] 0.064127 _atom_sites.fract_transf_matrix[1][2] -0.023785 _atom_sites.fract_transf_matrix[1][3] -0.004506 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.066623 _atom_sites.fract_transf_matrix[2][3] -0.002598 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.039663 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 1 1 THR THR A . n A 1 2 DVA 2 2 2 DVA DVA A . n A 1 3 DPL 3 3 3 DPL DPL A . n A 1 4 SAR 4 4 4 SAR SAR A . n A 1 5 MVA 5 5 5 MVA MVA A . n A 1 6 PXZ 6 6 6 PXZ PXZ A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 DVA 8 8 8 DVA DVA A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 SAR 10 10 10 SAR SAR A . n A 1 11 MVA 11 11 11 MVA MVA A . n B 1 1 THR 1 1 1 THR THR B . n B 1 2 DVA 2 2 2 DVA DVA B . n B 1 3 DPL 3 3 3 DPL DPL B . n B 1 4 SAR 4 4 4 SAR SAR B . n B 1 5 MVA 5 5 5 MVA MVA B . n B 1 6 PXZ 6 6 6 PXZ PXZ B . n B 1 7 THR 7 7 7 THR THR B . n B 1 8 DVA 8 8 8 DVA DVA B . n B 1 9 PRO 9 9 9 PRO PRO B . n B 1 10 SAR 10 10 10 SAR SAR B . n B 1 11 MVA 11 11 11 MVA MVA B . n C 1 1 THR 1 1 1 THR THR C . n C 1 2 DVA 2 2 2 DVA DVA C . n C 1 3 DPL 3 3 3 DPL DPL C . n C 1 4 SAR 4 4 4 SAR SAR C . n C 1 5 MVA 5 5 5 MVA MVA C . n C 1 6 PXZ 6 6 6 PXZ PXZ C . n C 1 7 THR 7 7 7 THR THR C . n C 1 8 DVA 8 8 8 DVA DVA C . n C 1 9 PRO 9 9 9 PRO PRO C . n C 1 10 SAR 10 10 10 SAR SAR C . n C 1 11 MVA 11 11 11 MVA MVA C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 EEE 1 34 34 EEE EEE A . E 2 EEE 1 35 35 EEE EEE A . F 2 EEE 1 37 37 EEE EEE A . G 2 EEE 1 38 38 EEE EEE A . H 2 EEE 1 40 40 EEE EEE A . I 3 MOH 1 42 42 MOH MOH A . J 2 EEE 1 36 36 EEE EEE C . K 3 MOH 1 39 39 MOH MOH C . L 2 EEE 1 41 41 EEE EEE C . M 3 MOH 1 43 43 MOH MOH C . N 3 MOH 1 44 44 MOH MOH C . O 3 MOH 1 45 45 MOH MOH C . # _pdbx_molecule_features.prd_id PRD_000007 _pdbx_molecule_features.name 'Actinomycin X2' _pdbx_molecule_features.type Polypeptide _pdbx_molecule_features.class Antibiotic _pdbx_molecule_features.details ;ACTINOMYCIN X2 CONSISTS OF TWO PENTAMER RINGS LINKED BY THE CHROMOPHORE (PXZ) ; # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_000007 A 2 PRD_000007 B 3 PRD_000007 C # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 3 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,D,E,F,G,H,I 2 1 B 3 1 C,J,K,L,M,N,O # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-07-15 2 'Structure model' 1 1 2011-06-14 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-07-27 5 'Structure model' 1 4 2012-12-12 6 'Structure model' 1 5 2017-10-04 7 'Structure model' 2 0 2023-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Non-polymer description' 7 4 'Structure model' 'Structure summary' 8 5 'Structure model' Other 9 6 'Structure model' Advisory 10 6 'Structure model' 'Refinement description' 11 7 'Structure model' 'Atomic model' 12 7 'Structure model' 'Data collection' 13 7 'Structure model' 'Database references' 14 7 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 6 'Structure model' pdbx_validate_polymer_linkage 2 6 'Structure model' software 3 7 'Structure model' atom_site 4 7 'Structure model' atom_site_anisotrop 5 7 'Structure model' chem_comp_atom 6 7 'Structure model' chem_comp_bond 7 7 'Structure model' database_2 8 7 'Structure model' struct_conn 9 7 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 6 'Structure model' '_software.name' 2 7 'Structure model' '_atom_site.auth_atom_id' 3 7 'Structure model' '_atom_site.label_atom_id' 4 7 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id' 5 7 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id' 6 7 'Structure model' '_database_2.pdbx_DOI' 7 7 'Structure model' '_database_2.pdbx_database_accession' 8 7 'Structure model' '_struct_conn.pdbx_dist_value' 9 7 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 10 7 'Structure model' '_struct_conn.ptnr1_label_atom_id' 11 7 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 12 7 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 13 7 'Structure model' '_struct_conn.ptnr2_label_atom_id' 14 7 'Structure model' '_struct_conn.ptnr2_label_comp_id' 15 7 'Structure model' '_struct_conn.ptnr2_label_seq_id' 16 7 'Structure model' '_struct_site.pdbx_auth_asym_id' 17 7 'Structure model' '_struct_site.pdbx_auth_comp_id' 18 7 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELX 'model building' . ? 1 SHELXL-97 refinement . ? 2 SAINT 'data reduction' . ? 3 SADABS 'data scaling' . ? 4 SHELX phasing . ? 5 # _pdbx_entry_details.entry_id 1QFI _pdbx_entry_details.compound_details ;ACTINOMYCIN X2 IS A BICYCLIC PEPTIDE, A MEMBER OF THE ACTINOMYCIN FAMILY. HERE, ACTINOMYCIN X2 IS REPRESENTED BY THE SEQUENCE (SEQRES) ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DPL N N N N 1 DPL CA C N S 2 DPL C C N N 3 DPL O O N N 4 DPL CB C N N 5 DPL CG C N N 6 DPL CD C N N 7 DPL OG1 O N N 8 DPL OXT O N N 9 DPL H H N N 10 DPL HA H N N 11 DPL HB2 H N N 12 DPL HB3 H N N 13 DPL HD3 H N N 14 DPL HD2 H N N 15 DPL HXT H N N 16 DVA N N N N 17 DVA CA C N R 18 DVA CB C N N 19 DVA CG1 C N N 20 DVA CG2 C N N 21 DVA C C N N 22 DVA O O N N 23 DVA OXT O N N 24 DVA H H N N 25 DVA H2 H N N 26 DVA HA H N N 27 DVA HB H N N 28 DVA HG11 H N N 29 DVA HG12 H N N 30 DVA HG13 H N N 31 DVA HG21 H N N 32 DVA HG22 H N N 33 DVA HG23 H N N 34 DVA HXT H N N 35 EEE C1 C N N 36 EEE C2 C N N 37 EEE O1 O N N 38 EEE O2 O N N 39 EEE C3 C N N 40 EEE C4 C N N 41 EEE H21 H N N 42 EEE H22 H N N 43 EEE H23 H N N 44 EEE H31 H N N 45 EEE H32 H N N 46 EEE H41 H N N 47 EEE H42 H N N 48 EEE H43 H N N 49 MOH C C N N 50 MOH O O N N 51 MOH H1 H N N 52 MOH H2 H N N 53 MOH H3 H N N 54 MOH HO H N N 55 MVA N N N N 56 MVA CN C N N 57 MVA CA C N S 58 MVA CB C N N 59 MVA CG1 C N N 60 MVA CG2 C N N 61 MVA C C N N 62 MVA O O N N 63 MVA OXT O N N 64 MVA H H N N 65 MVA HN1 H N N 66 MVA HN2 H N N 67 MVA HN3 H N N 68 MVA HA H N N 69 MVA HB H N N 70 MVA HG11 H N N 71 MVA HG12 H N N 72 MVA HG13 H N N 73 MVA HG21 H N N 74 MVA HG22 H N N 75 MVA HG23 H N N 76 MVA HXT H N N 77 PRO N N N N 78 PRO CA C N S 79 PRO C C N N 80 PRO O O N N 81 PRO CB C N N 82 PRO CG C N N 83 PRO CD C N N 84 PRO OXT O N N 85 PRO H H N N 86 PRO HA H N N 87 PRO HB2 H N N 88 PRO HB3 H N N 89 PRO HG2 H N N 90 PRO HG3 H N N 91 PRO HD2 H N N 92 PRO HD3 H N N 93 PRO HXT H N N 94 PXZ C1 C Y N 95 PXZ C0 C N N 96 PXZ O1 O N N 97 PXZ C2 C Y N 98 PXZ N2 N N N 99 PXZ C3 C Y N 100 PXZ O3 O N N 101 PXZ C4 C Y N 102 PXZ O5 O Y N 103 PXZ C6 C Y N 104 PXZ C7 C Y N 105 PXZ C8 C Y N 106 PXZ C9 C Y N 107 PXZ "C0'" C N N 108 PXZ "O1'" O N N 109 PXZ N10 N Y N 110 PXZ C11 C Y N 111 PXZ C12 C Y N 112 PXZ C13 C Y N 113 PXZ C14 C Y N 114 PXZ C15 C N N 115 PXZ C16 C N N 116 PXZ H1 H N N 117 PXZ HN21 H N N 118 PXZ HN22 H N N 119 PXZ H7 H N N 120 PXZ H8 H N N 121 PXZ "H1'" H N N 122 PXZ H151 H N N 123 PXZ H152 H N N 124 PXZ H153 H N N 125 PXZ H161 H N N 126 PXZ H162 H N N 127 PXZ H163 H N N 128 SAR N N N N 129 SAR CA C N N 130 SAR C C N N 131 SAR O O N N 132 SAR CN C N N 133 SAR OXT O N N 134 SAR H H N N 135 SAR HA2 H N N 136 SAR HA3 H N N 137 SAR HN1 H N N 138 SAR HN2 H N N 139 SAR HN3 H N N 140 SAR HXT H N N 141 THR N N N N 142 THR CA C N S 143 THR C C N N 144 THR O O N N 145 THR CB C N R 146 THR OG1 O N N 147 THR CG2 C N N 148 THR OXT O N N 149 THR H H N N 150 THR H2 H N N 151 THR HA H N N 152 THR HB H N N 153 THR HG1 H N N 154 THR HG21 H N N 155 THR HG22 H N N 156 THR HG23 H N N 157 THR HXT H N N 158 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DPL N CA sing N N 1 DPL N CD sing N N 2 DPL N H sing N N 3 DPL CA C sing N N 4 DPL CA CB sing N N 5 DPL CA HA sing N N 6 DPL C O doub N N 7 DPL C OXT sing N N 8 DPL CB CG sing N N 9 DPL CB HB2 sing N N 10 DPL CB HB3 sing N N 11 DPL CG CD sing N N 12 DPL CG OG1 doub N N 13 DPL CD HD3 sing N N 14 DPL CD HD2 sing N N 15 DPL OXT HXT sing N N 16 DVA N CA sing N N 17 DVA N H sing N N 18 DVA N H2 sing N N 19 DVA CA CB sing N N 20 DVA CA C sing N N 21 DVA CA HA sing N N 22 DVA CB CG1 sing N N 23 DVA CB CG2 sing N N 24 DVA CB HB sing N N 25 DVA CG1 HG11 sing N N 26 DVA CG1 HG12 sing N N 27 DVA CG1 HG13 sing N N 28 DVA CG2 HG21 sing N N 29 DVA CG2 HG22 sing N N 30 DVA CG2 HG23 sing N N 31 DVA C O doub N N 32 DVA C OXT sing N N 33 DVA OXT HXT sing N N 34 EEE C1 C2 sing N N 35 EEE C1 O1 doub N N 36 EEE C1 O2 sing N N 37 EEE C2 H21 sing N N 38 EEE C2 H22 sing N N 39 EEE C2 H23 sing N N 40 EEE O2 C3 sing N N 41 EEE C3 C4 sing N N 42 EEE C3 H31 sing N N 43 EEE C3 H32 sing N N 44 EEE C4 H41 sing N N 45 EEE C4 H42 sing N N 46 EEE C4 H43 sing N N 47 MOH C O sing N N 48 MOH C H1 sing N N 49 MOH C H2 sing N N 50 MOH C H3 sing N N 51 MOH O HO sing N N 52 MVA N CN sing N N 53 MVA N CA sing N N 54 MVA N H sing N N 55 MVA CN HN1 sing N N 56 MVA CN HN2 sing N N 57 MVA CN HN3 sing N N 58 MVA CA CB sing N N 59 MVA CA C sing N N 60 MVA CA HA sing N N 61 MVA CB CG1 sing N N 62 MVA CB CG2 sing N N 63 MVA CB HB sing N N 64 MVA CG1 HG11 sing N N 65 MVA CG1 HG12 sing N N 66 MVA CG1 HG13 sing N N 67 MVA CG2 HG21 sing N N 68 MVA CG2 HG22 sing N N 69 MVA CG2 HG23 sing N N 70 MVA C O doub N N 71 MVA C OXT sing N N 72 MVA OXT HXT sing N N 73 PRO N CA sing N N 74 PRO N CD sing N N 75 PRO N H sing N N 76 PRO CA C sing N N 77 PRO CA CB sing N N 78 PRO CA HA sing N N 79 PRO C O doub N N 80 PRO C OXT sing N N 81 PRO CB CG sing N N 82 PRO CB HB2 sing N N 83 PRO CB HB3 sing N N 84 PRO CG CD sing N N 85 PRO CG HG2 sing N N 86 PRO CG HG3 sing N N 87 PRO CD HD2 sing N N 88 PRO CD HD3 sing N N 89 PRO OXT HXT sing N N 90 PXZ C1 C0 sing N N 91 PXZ C1 C2 doub Y N 92 PXZ C1 C11 sing Y N 93 PXZ C0 O1 doub N N 94 PXZ C0 H1 sing N N 95 PXZ C2 N2 sing N N 96 PXZ C2 C3 sing Y N 97 PXZ N2 HN21 sing N N 98 PXZ N2 HN22 sing N N 99 PXZ C3 O3 doub N N 100 PXZ C3 C4 sing Y N 101 PXZ C4 C12 doub Y N 102 PXZ C4 C15 sing N N 103 PXZ O5 C12 sing Y N 104 PXZ O5 C13 sing Y N 105 PXZ C6 C7 doub Y N 106 PXZ C6 C13 sing Y N 107 PXZ C6 C16 sing N N 108 PXZ C7 C8 sing Y N 109 PXZ C7 H7 sing N N 110 PXZ C8 C9 doub Y N 111 PXZ C8 H8 sing N N 112 PXZ C9 "C0'" sing N N 113 PXZ C9 C14 sing Y N 114 PXZ "C0'" "O1'" doub N N 115 PXZ "C0'" "H1'" sing N N 116 PXZ N10 C11 doub Y N 117 PXZ N10 C14 sing Y N 118 PXZ C11 C12 sing Y N 119 PXZ C13 C14 doub Y N 120 PXZ C15 H151 sing N N 121 PXZ C15 H152 sing N N 122 PXZ C15 H153 sing N N 123 PXZ C16 H161 sing N N 124 PXZ C16 H162 sing N N 125 PXZ C16 H163 sing N N 126 SAR N CA sing N N 127 SAR N CN sing N N 128 SAR N H sing N N 129 SAR CA C sing N N 130 SAR CA HA2 sing N N 131 SAR CA HA3 sing N N 132 SAR C O doub N N 133 SAR C OXT sing N N 134 SAR CN HN1 sing N N 135 SAR CN HN2 sing N N 136 SAR CN HN3 sing N N 137 SAR OXT HXT sing N N 138 THR N CA sing N N 139 THR N H sing N N 140 THR N H2 sing N N 141 THR CA C sing N N 142 THR CA CB sing N N 143 THR CA HA sing N N 144 THR C O doub N N 145 THR C OXT sing N N 146 THR CB OG1 sing N N 147 THR CB CG2 sing N N 148 THR CB HB sing N N 149 THR OG1 HG1 sing N N 150 THR CG2 HG21 sing N N 151 THR CG2 HG22 sing N N 152 THR CG2 HG23 sing N N 153 THR OXT HXT sing N N 154 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ETHYL ACETATE' EEE 3 METHANOL MOH #