data_1QPI # _entry.id 1QPI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1QPI pdb_00001qpi 10.2210/pdb1qpi/pdb NDB PD0122 ? ? RCSB RCSB009115 ? ? WWPDB D_1000009115 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-02-28 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1QPI _pdbx_database_status.recvd_initial_deposition_date 1999-05-25 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Orth, P.' 1 'Schnappinger, D.' 2 'Hillen, W.' 3 'Saenger, W.' 4 'Hinrichs, W.' 5 # _citation.id primary _citation.title 'Structural basis of gene regulation by the tetracycline inducible Tet repressor-operator system.' _citation.journal_abbrev Nat.Struct.Biol. _citation.journal_volume 7 _citation.page_first 215 _citation.page_last 219 _citation.year 2000 _citation.journal_id_ASTM NSBIEW _citation.country US _citation.journal_id_ISSN 1072-8368 _citation.journal_id_CSD 2024 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10700280 _citation.pdbx_database_id_DOI 10.1038/73324 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Orth, P.' 1 ? primary 'Schnappinger, D.' 2 ? primary 'Hillen, W.' 3 ? primary 'Saenger, W.' 4 ? primary 'Hinrichs, W.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*CP*TP*AP*TP*CP*AP*AP*TP*GP*AP*TP*AP*GP*A)-3') ; 4577.012 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*TP*CP*TP*AP*TP*CP*AP*TP*TP*GP*AP*TP*AP*GP*G)-3') ; 4599.008 1 ? ? ? ? 3 polymer man 'PROTEIN (TETRACYCLINE REPRESSOR)' 22831.771 1 ? ? ? ? 4 non-polymer syn IMIDAZOLE 69.085 1 ? ? ? ? 5 water nat water 18.015 41 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'TET OPERATOR DNA' 2 'TET OPERATOR DNA' 3 'REGULATORY PROTEIN TETR' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DC)(DT)(DA)(DT)(DC)(DA)(DA)(DT)(DG)(DA)(DT)(DA)(DG)(DA)' CCTATCAATGATAGA M ? 2 polydeoxyribonucleotide no no '(DT)(DC)(DT)(DA)(DT)(DC)(DA)(DT)(DT)(DG)(DA)(DT)(DA)(DG)(DG)' TCTATCATTGATAGG N ? 3 'polypeptide(L)' no no ;LNRESVIDAALELLNETGIDGLTTRKLAQKLGIEQPTLYWHVKNKRALLDALAVEILARHHDYSLPAAGESWQSFLRNNA MSFRRALLRYRDGAKVHLGTRPDEKQYDTVETQLRFMTENGFSLRDGLYAISAVSHFTLGAVLEQQEHTAALTDRPAAPD ENLPPLLREALQIMDSDDGEQAFLHGLESLIRGFEVQLTALLQ ; ;LNRESVIDAALELLNETGIDGLTTRKLAQKLGIEQPTLYWHVKNKRALLDALAVEILARHHDYSLPAAGESWQSFLRNNA MSFRRALLRYRDGAKVHLGTRPDEKQYDTVETQLRFMTENGFSLRDGLYAISAVSHFTLGAVLEQQEHTAALTDRPAAPD ENLPPLLREALQIMDSDDGEQAFLHGLESLIRGFEVQLTALLQ ; A ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 IMIDAZOLE IMD 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DT n 1 4 DA n 1 5 DT n 1 6 DC n 1 7 DA n 1 8 DA n 1 9 DT n 1 10 DG n 1 11 DA n 1 12 DT n 1 13 DA n 1 14 DG n 1 15 DA n 2 1 DT n 2 2 DC n 2 3 DT n 2 4 DA n 2 5 DT n 2 6 DC n 2 7 DA n 2 8 DT n 2 9 DT n 2 10 DG n 2 11 DA n 2 12 DT n 2 13 DA n 2 14 DG n 2 15 DG n 3 1 LEU n 3 2 ASN n 3 3 ARG n 3 4 GLU n 3 5 SER n 3 6 VAL n 3 7 ILE n 3 8 ASP n 3 9 ALA n 3 10 ALA n 3 11 LEU n 3 12 GLU n 3 13 LEU n 3 14 LEU n 3 15 ASN n 3 16 GLU n 3 17 THR n 3 18 GLY n 3 19 ILE n 3 20 ASP n 3 21 GLY n 3 22 LEU n 3 23 THR n 3 24 THR n 3 25 ARG n 3 26 LYS n 3 27 LEU n 3 28 ALA n 3 29 GLN n 3 30 LYS n 3 31 LEU n 3 32 GLY n 3 33 ILE n 3 34 GLU n 3 35 GLN n 3 36 PRO n 3 37 THR n 3 38 LEU n 3 39 TYR n 3 40 TRP n 3 41 HIS n 3 42 VAL n 3 43 LYS n 3 44 ASN n 3 45 LYS n 3 46 ARG n 3 47 ALA n 3 48 LEU n 3 49 LEU n 3 50 ASP n 3 51 ALA n 3 52 LEU n 3 53 ALA n 3 54 VAL n 3 55 GLU n 3 56 ILE n 3 57 LEU n 3 58 ALA n 3 59 ARG n 3 60 HIS n 3 61 HIS n 3 62 ASP n 3 63 TYR n 3 64 SER n 3 65 LEU n 3 66 PRO n 3 67 ALA n 3 68 ALA n 3 69 GLY n 3 70 GLU n 3 71 SER n 3 72 TRP n 3 73 GLN n 3 74 SER n 3 75 PHE n 3 76 LEU n 3 77 ARG n 3 78 ASN n 3 79 ASN n 3 80 ALA n 3 81 MET n 3 82 SER n 3 83 PHE n 3 84 ARG n 3 85 ARG n 3 86 ALA n 3 87 LEU n 3 88 LEU n 3 89 ARG n 3 90 TYR n 3 91 ARG n 3 92 ASP n 3 93 GLY n 3 94 ALA n 3 95 LYS n 3 96 VAL n 3 97 HIS n 3 98 LEU n 3 99 GLY n 3 100 THR n 3 101 ARG n 3 102 PRO n 3 103 ASP n 3 104 GLU n 3 105 LYS n 3 106 GLN n 3 107 TYR n 3 108 ASP n 3 109 THR n 3 110 VAL n 3 111 GLU n 3 112 THR n 3 113 GLN n 3 114 LEU n 3 115 ARG n 3 116 PHE n 3 117 MET n 3 118 THR n 3 119 GLU n 3 120 ASN n 3 121 GLY n 3 122 PHE n 3 123 SER n 3 124 LEU n 3 125 ARG n 3 126 ASP n 3 127 GLY n 3 128 LEU n 3 129 TYR n 3 130 ALA n 3 131 ILE n 3 132 SER n 3 133 ALA n 3 134 VAL n 3 135 SER n 3 136 HIS n 3 137 PHE n 3 138 THR n 3 139 LEU n 3 140 GLY n 3 141 ALA n 3 142 VAL n 3 143 LEU n 3 144 GLU n 3 145 GLN n 3 146 GLN n 3 147 GLU n 3 148 HIS n 3 149 THR n 3 150 ALA n 3 151 ALA n 3 152 LEU n 3 153 THR n 3 154 ASP n 3 155 ARG n 3 156 PRO n 3 157 ALA n 3 158 ALA n 3 159 PRO n 3 160 ASP n 3 161 GLU n 3 162 ASN n 3 163 LEU n 3 164 PRO n 3 165 PRO n 3 166 LEU n 3 167 LEU n 3 168 ARG n 3 169 GLU n 3 170 ALA n 3 171 LEU n 3 172 GLN n 3 173 ILE n 3 174 MET n 3 175 ASP n 3 176 SER n 3 177 ASP n 3 178 ASP n 3 179 GLY n 3 180 GLU n 3 181 GLN n 3 182 ALA n 3 183 PHE n 3 184 LEU n 3 185 HIS n 3 186 GLY n 3 187 LEU n 3 188 GLU n 3 189 SER n 3 190 LEU n 3 191 ILE n 3 192 ARG n 3 193 GLY n 3 194 PHE n 3 195 GLU n 3 196 VAL n 3 197 GLN n 3 198 LEU n 3 199 THR n 3 200 ALA n 3 201 LEU n 3 202 LEU n 3 203 GLN n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Escherichia _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'K12 DELTA H1 DELTA TRP' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'DNA SEQUENCE TAKEN FROM TET OPERATOR CLASS D' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IMD non-polymer . IMIDAZOLE ? 'C3 H5 N2 1' 69.085 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C M . n A 1 2 DC 2 2 2 DC C M . n A 1 3 DT 3 3 3 DT T M . n A 1 4 DA 4 4 4 DA A M . n A 1 5 DT 5 5 5 DT T M . n A 1 6 DC 6 6 6 DC C M . n A 1 7 DA 7 7 7 DA A M . n A 1 8 DA 8 8 8 DA A M . n A 1 9 DT 9 9 9 DT T M . n A 1 10 DG 10 10 10 DG G M . n A 1 11 DA 11 11 11 DA A M . n A 1 12 DT 12 12 12 DT T M . n A 1 13 DA 13 13 13 DA A M . n A 1 14 DG 14 14 14 DG G M . n A 1 15 DA 15 15 15 DA A M . n B 2 1 DT 1 1 1 DT T N . n B 2 2 DC 2 2 2 DC C N . n B 2 3 DT 3 3 3 DT T N . n B 2 4 DA 4 4 4 DA A N . n B 2 5 DT 5 5 5 DT T N . n B 2 6 DC 6 6 6 DC C N . n B 2 7 DA 7 7 7 DA A N . n B 2 8 DT 8 8 8 DT T N . n B 2 9 DT 9 9 9 DT T N . n B 2 10 DG 10 10 10 DG G N . n B 2 11 DA 11 11 11 DA A N . n B 2 12 DT 12 12 12 DT T N . n B 2 13 DA 13 13 13 DA A N . n B 2 14 DG 14 14 14 DG G N . n B 2 15 DG 15 15 15 DG G N . n C 3 1 LEU 1 4 4 LEU LEU A . n C 3 2 ASN 2 5 5 ASN ASN A . n C 3 3 ARG 3 6 6 ARG ARG A . n C 3 4 GLU 4 7 7 GLU GLU A . n C 3 5 SER 5 8 8 SER SER A . n C 3 6 VAL 6 9 9 VAL VAL A . n C 3 7 ILE 7 10 10 ILE ILE A . n C 3 8 ASP 8 11 11 ASP ASP A . n C 3 9 ALA 9 12 12 ALA ALA A . n C 3 10 ALA 10 13 13 ALA ALA A . n C 3 11 LEU 11 14 14 LEU LEU A . n C 3 12 GLU 12 15 15 GLU GLU A . n C 3 13 LEU 13 16 16 LEU LEU A . n C 3 14 LEU 14 17 17 LEU LEU A . n C 3 15 ASN 15 18 18 ASN ASN A . n C 3 16 GLU 16 19 19 GLU GLU A . n C 3 17 THR 17 20 20 THR THR A . n C 3 18 GLY 18 21 21 GLY GLY A . n C 3 19 ILE 19 22 22 ILE ILE A . n C 3 20 ASP 20 23 23 ASP ASP A . n C 3 21 GLY 21 24 24 GLY GLY A . n C 3 22 LEU 22 25 25 LEU LEU A . n C 3 23 THR 23 26 26 THR THR A . n C 3 24 THR 24 27 27 THR THR A . n C 3 25 ARG 25 28 28 ARG ARG A . n C 3 26 LYS 26 29 29 LYS LYS A . n C 3 27 LEU 27 30 30 LEU LEU A . n C 3 28 ALA 28 31 31 ALA ALA A . n C 3 29 GLN 29 32 32 GLN GLN A . n C 3 30 LYS 30 33 33 LYS LYS A . n C 3 31 LEU 31 34 34 LEU LEU A . n C 3 32 GLY 32 35 35 GLY GLY A . n C 3 33 ILE 33 36 36 ILE ILE A . n C 3 34 GLU 34 37 37 GLU GLU A . n C 3 35 GLN 35 38 38 GLN GLN A . n C 3 36 PRO 36 39 39 PRO PRO A . n C 3 37 THR 37 40 40 THR THR A . n C 3 38 LEU 38 41 41 LEU LEU A . n C 3 39 TYR 39 42 42 TYR TYR A . n C 3 40 TRP 40 43 43 TRP TRP A . n C 3 41 HIS 41 44 44 HIS HIS A . n C 3 42 VAL 42 45 45 VAL VAL A . n C 3 43 LYS 43 46 46 LYS LYS A . n C 3 44 ASN 44 47 47 ASN ASN A . n C 3 45 LYS 45 48 48 LYS LYS A . n C 3 46 ARG 46 49 49 ARG ARG A . n C 3 47 ALA 47 50 50 ALA ALA A . n C 3 48 LEU 48 51 51 LEU LEU A . n C 3 49 LEU 49 52 52 LEU LEU A . n C 3 50 ASP 50 53 53 ASP ASP A . n C 3 51 ALA 51 54 54 ALA ALA A . n C 3 52 LEU 52 55 55 LEU LEU A . n C 3 53 ALA 53 56 56 ALA ALA A . n C 3 54 VAL 54 57 57 VAL VAL A . n C 3 55 GLU 55 58 58 GLU GLU A . n C 3 56 ILE 56 59 59 ILE ILE A . n C 3 57 LEU 57 60 60 LEU LEU A . n C 3 58 ALA 58 61 61 ALA ALA A . n C 3 59 ARG 59 62 62 ARG ARG A . n C 3 60 HIS 60 63 63 HIS HIS A . n C 3 61 HIS 61 64 64 HIS HIS A . n C 3 62 ASP 62 65 65 ASP ASP A . n C 3 63 TYR 63 66 66 TYR TYR A . n C 3 64 SER 64 67 67 SER SER A . n C 3 65 LEU 65 68 68 LEU LEU A . n C 3 66 PRO 66 69 69 PRO PRO A . n C 3 67 ALA 67 70 70 ALA ALA A . n C 3 68 ALA 68 71 71 ALA ALA A . n C 3 69 GLY 69 72 72 GLY GLY A . n C 3 70 GLU 70 73 73 GLU GLU A . n C 3 71 SER 71 74 74 SER SER A . n C 3 72 TRP 72 75 75 TRP TRP A . n C 3 73 GLN 73 76 76 GLN GLN A . n C 3 74 SER 74 77 77 SER SER A . n C 3 75 PHE 75 78 78 PHE PHE A . n C 3 76 LEU 76 79 79 LEU LEU A . n C 3 77 ARG 77 80 80 ARG ARG A . n C 3 78 ASN 78 81 81 ASN ASN A . n C 3 79 ASN 79 82 82 ASN ASN A . n C 3 80 ALA 80 83 83 ALA ALA A . n C 3 81 MET 81 84 84 MET MET A . n C 3 82 SER 82 85 85 SER SER A . n C 3 83 PHE 83 86 86 PHE PHE A . n C 3 84 ARG 84 87 87 ARG ARG A . n C 3 85 ARG 85 88 88 ARG ARG A . n C 3 86 ALA 86 89 89 ALA ALA A . n C 3 87 LEU 87 90 90 LEU LEU A . n C 3 88 LEU 88 91 91 LEU LEU A . n C 3 89 ARG 89 92 92 ARG ARG A . n C 3 90 TYR 90 93 93 TYR TYR A . n C 3 91 ARG 91 94 94 ARG ARG A . n C 3 92 ASP 92 95 95 ASP ASP A . n C 3 93 GLY 93 96 96 GLY GLY A . n C 3 94 ALA 94 97 97 ALA ALA A . n C 3 95 LYS 95 98 98 LYS LYS A . n C 3 96 VAL 96 99 99 VAL VAL A . n C 3 97 HIS 97 100 100 HIS HIS A . n C 3 98 LEU 98 101 101 LEU LEU A . n C 3 99 GLY 99 102 102 GLY GLY A . n C 3 100 THR 100 103 103 THR THR A . n C 3 101 ARG 101 104 104 ARG ARG A . n C 3 102 PRO 102 105 105 PRO PRO A . n C 3 103 ASP 103 106 106 ASP ASP A . n C 3 104 GLU 104 107 107 GLU GLU A . n C 3 105 LYS 105 108 108 LYS LYS A . n C 3 106 GLN 106 109 109 GLN GLN A . n C 3 107 TYR 107 110 110 TYR TYR A . n C 3 108 ASP 108 111 111 ASP ASP A . n C 3 109 THR 109 112 112 THR THR A . n C 3 110 VAL 110 113 113 VAL VAL A . n C 3 111 GLU 111 114 114 GLU GLU A . n C 3 112 THR 112 115 115 THR THR A . n C 3 113 GLN 113 116 116 GLN GLN A . n C 3 114 LEU 114 117 117 LEU LEU A . n C 3 115 ARG 115 118 118 ARG ARG A . n C 3 116 PHE 116 119 119 PHE PHE A . n C 3 117 MET 117 120 120 MET MET A . n C 3 118 THR 118 121 121 THR THR A . n C 3 119 GLU 119 122 122 GLU GLU A . n C 3 120 ASN 120 123 123 ASN ASN A . n C 3 121 GLY 121 124 124 GLY GLY A . n C 3 122 PHE 122 125 125 PHE PHE A . n C 3 123 SER 123 126 126 SER SER A . n C 3 124 LEU 124 127 127 LEU LEU A . n C 3 125 ARG 125 128 128 ARG ARG A . n C 3 126 ASP 126 129 129 ASP ASP A . n C 3 127 GLY 127 130 130 GLY GLY A . n C 3 128 LEU 128 131 131 LEU LEU A . n C 3 129 TYR 129 132 132 TYR TYR A . n C 3 130 ALA 130 133 133 ALA ALA A . n C 3 131 ILE 131 134 134 ILE ILE A . n C 3 132 SER 132 135 135 SER SER A . n C 3 133 ALA 133 136 136 ALA ALA A . n C 3 134 VAL 134 137 137 VAL VAL A . n C 3 135 SER 135 138 138 SER SER A . n C 3 136 HIS 136 139 139 HIS HIS A . n C 3 137 PHE 137 140 140 PHE PHE A . n C 3 138 THR 138 141 141 THR THR A . n C 3 139 LEU 139 142 142 LEU LEU A . n C 3 140 GLY 140 143 143 GLY GLY A . n C 3 141 ALA 141 144 144 ALA ALA A . n C 3 142 VAL 142 145 145 VAL VAL A . n C 3 143 LEU 143 146 146 LEU LEU A . n C 3 144 GLU 144 147 147 GLU GLU A . n C 3 145 GLN 145 148 148 GLN GLN A . n C 3 146 GLN 146 149 149 GLN GLN A . n C 3 147 GLU 147 150 150 GLU GLU A . n C 3 148 HIS 148 151 151 HIS HIS A . n C 3 149 THR 149 152 152 THR THR A . n C 3 150 ALA 150 153 153 ALA ALA A . n C 3 151 ALA 151 154 154 ALA ALA A . n C 3 152 LEU 152 155 155 LEU LEU A . n C 3 153 THR 153 156 ? ? ? A . n C 3 154 ASP 154 157 ? ? ? A . n C 3 155 ARG 155 158 ? ? ? A . n C 3 156 PRO 156 159 ? ? ? A . n C 3 157 ALA 157 160 ? ? ? A . n C 3 158 ALA 158 161 ? ? ? A . n C 3 159 PRO 159 162 ? ? ? A . n C 3 160 ASP 160 163 ? ? ? A . n C 3 161 GLU 161 164 164 GLU GLU A . n C 3 162 ASN 162 165 165 ASN ASN A . n C 3 163 LEU 163 166 166 LEU LEU A . n C 3 164 PRO 164 167 167 PRO PRO A . n C 3 165 PRO 165 168 168 PRO PRO A . n C 3 166 LEU 166 169 169 LEU LEU A . n C 3 167 LEU 167 170 170 LEU LEU A . n C 3 168 ARG 168 171 171 ARG ARG A . n C 3 169 GLU 169 172 172 GLU GLU A . n C 3 170 ALA 170 173 173 ALA ALA A . n C 3 171 LEU 171 174 174 LEU LEU A . n C 3 172 GLN 172 175 175 GLN GLN A . n C 3 173 ILE 173 176 176 ILE ILE A . n C 3 174 MET 174 177 177 MET MET A . n C 3 175 ASP 175 178 178 ASP ASP A . n C 3 176 SER 176 179 179 SER SER A . n C 3 177 ASP 177 180 180 ASP ASP A . n C 3 178 ASP 178 181 181 ASP ASP A . n C 3 179 GLY 179 182 182 GLY GLY A . n C 3 180 GLU 180 183 183 GLU GLU A . n C 3 181 GLN 181 184 184 GLN GLN A . n C 3 182 ALA 182 185 185 ALA ALA A . n C 3 183 PHE 183 186 186 PHE PHE A . n C 3 184 LEU 184 187 187 LEU LEU A . n C 3 185 HIS 185 188 188 HIS HIS A . n C 3 186 GLY 186 189 189 GLY GLY A . n C 3 187 LEU 187 190 190 LEU LEU A . n C 3 188 GLU 188 191 191 GLU GLU A . n C 3 189 SER 189 192 192 SER SER A . n C 3 190 LEU 190 193 193 LEU LEU A . n C 3 191 ILE 191 194 194 ILE ILE A . n C 3 192 ARG 192 195 195 ARG ARG A . n C 3 193 GLY 193 196 196 GLY GLY A . n C 3 194 PHE 194 197 197 PHE PHE A . n C 3 195 GLU 195 198 198 GLU GLU A . n C 3 196 VAL 196 199 199 VAL VAL A . n C 3 197 GLN 197 200 200 GLN GLN A . n C 3 198 LEU 198 201 201 LEU LEU A . n C 3 199 THR 199 202 202 THR THR A . n C 3 200 ALA 200 203 203 ALA ALA A . n C 3 201 LEU 201 204 204 LEU LEU A . n C 3 202 LEU 202 205 205 LEU LEU A . n C 3 203 GLN 203 206 206 GLN GLN A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 IMD 1 1 1 IMD IMD A . E 5 HOH 1 16 16 HOH HOH M . E 5 HOH 2 29 29 HOH HOH M . E 5 HOH 3 30 30 HOH HOH M . F 5 HOH 1 207 2 HOH HOH A . F 5 HOH 2 208 3 HOH HOH A . F 5 HOH 3 209 4 HOH HOH A . F 5 HOH 4 210 5 HOH HOH A . F 5 HOH 5 211 6 HOH HOH A . F 5 HOH 6 212 7 HOH HOH A . F 5 HOH 7 213 8 HOH HOH A . F 5 HOH 8 214 9 HOH HOH A . F 5 HOH 9 215 10 HOH HOH A . F 5 HOH 10 216 11 HOH HOH A . F 5 HOH 11 217 12 HOH HOH A . F 5 HOH 12 218 13 HOH HOH A . F 5 HOH 13 219 14 HOH HOH A . F 5 HOH 14 220 15 HOH HOH A . F 5 HOH 15 221 17 HOH HOH A . F 5 HOH 16 222 18 HOH HOH A . F 5 HOH 17 223 19 HOH HOH A . F 5 HOH 18 224 20 HOH HOH A . F 5 HOH 19 225 21 HOH HOH A . F 5 HOH 20 226 22 HOH HOH A . F 5 HOH 21 227 23 HOH HOH A . F 5 HOH 22 228 24 HOH HOH A . F 5 HOH 23 229 25 HOH HOH A . F 5 HOH 24 230 26 HOH HOH A . F 5 HOH 25 231 27 HOH HOH A . F 5 HOH 26 232 28 HOH HOH A . F 5 HOH 27 233 31 HOH HOH A . F 5 HOH 28 234 32 HOH HOH A . F 5 HOH 29 235 33 HOH HOH A . F 5 HOH 30 236 34 HOH HOH A . F 5 HOH 31 237 35 HOH HOH A . F 5 HOH 32 238 36 HOH HOH A . F 5 HOH 33 239 37 HOH HOH A . F 5 HOH 34 240 38 HOH HOH A . F 5 HOH 35 241 39 HOH HOH A . F 5 HOH 36 242 40 HOH HOH A . F 5 HOH 37 243 41 HOH HOH A . F 5 HOH 38 244 42 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 N DT 1 ? C7 ? B DT 1 C7 2 1 Y 1 N DG 15 ? N2 ? B DG 15 N2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 X-PLOR refinement 3.851 ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # _cell.entry_id 1QPI _cell.length_a 38.040 _cell.length_b 193.200 _cell.length_c 91.750 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QPI _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 20 # _exptl.entry_id 1QPI _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.61 _exptl_crystal.density_percent_sol 52.81 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.00 _exptl_crystal_grow.pdbx_details 'pH 8.00' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1997-07-28 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'ENRAF-NONIUS FR571' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1QPI _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 34.500 _reflns.d_resolution_high 2.450 _reflns.number_obs 12437 _reflns.number_all ? _reflns.percent_possible_obs 97.2 _reflns.pdbx_Rmerge_I_obs 0.0900000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 12.1000 _reflns.B_iso_Wilson_estimate 58.00 _reflns.pdbx_redundancy 3.400 _reflns.R_free_details ? _reflns.limit_k_min ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.45 _reflns_shell.d_res_low 2.55 _reflns_shell.percent_possible_all 93.3 _reflns_shell.Rmerge_I_obs 0.2870000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 3.00 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1QPI _refine.ls_number_reflns_obs 11520 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 34.50 _refine.ls_d_res_high 2.50 _refine.ls_percent_reflns_obs 94.5 _refine.ls_R_factor_obs 0.2440000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2440000 _refine.ls_R_factor_R_free 0.3070000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.000 _refine.ls_number_reflns_R_free 1166 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;USED WEIGHTED FULL MATRIX LEAST SQUARE PROCEDURE. THE DNA BASE PAIRS 1, 8 AND 15 ARE NOT PALINDROMIC. IN REFINEMENT THE CENTRAL BASE M 8 WAS MODELED USING ADENINE AND THYMINE WITH 50 % OCCUPANCY EACH, RESPECTIVELY. BASE M 1 WAS EITHER CYTOSINE OR THYMINE AND BASE M 15 WAS EITHER GUANINE OR ADENINE. DUE TO CLOSE CRYSTAL PACKING CONTACTS THESE TERMINAL BASES WERE FOUND DISORDERED AND WERE MODELED AS CYTOSINE (BASE M 1) AND ADENINE (BASE M 15), RESPECTIVELY. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1551 _refine_hist.pdbx_number_atoms_nucleic_acid 324 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 41 _refine_hist.number_atoms_total 1921 _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 34.50 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.34 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1QPI _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1QPI _struct.title 'CRYSTAL STRUCTURE OF TETRACYCLINE REPRESSOR/OPERATOR COMPLEX' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1QPI _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA _struct_keywords.text 'TRANSCRIPTION REGULATION, REPRESSOR-OPERATOR COMPLEX, TRANSCRIPTION-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP TETR4_ECOLI 3 ? ? P0ACT4 ? 2 PDB 1QPI 1 ? ? 1QPI ? 3 PDB 1QPI 2 ? ? 1QPI ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1QPI A 1 ? 203 ? P0ACT4 3 ? 205 ? 4 206 2 2 1QPI M 1 ? 15 ? 1QPI 1 ? 15 ? 1 15 3 3 1QPI N 1 ? 15 ? 1QPI 1 ? 15 ? 1 15 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 45.8750000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG C 3 ? GLY C 18 ? ARG A 6 GLY A 21 1 ? 16 HELX_P HELX_P2 2 THR C 17 ? LEU C 22 ? THR A 20 LEU A 25 1 ? 6 HELX_P HELX_P3 3 THR C 23 ? LEU C 31 ? THR A 26 LEU A 34 1 ? 9 HELX_P HELX_P4 4 GLU C 34 ? PRO C 36 ? GLU A 37 PRO A 39 5 ? 3 HELX_P HELX_P5 5 THR C 37 ? VAL C 42 ? THR A 40 VAL A 45 1 ? 6 HELX_P HELX_P6 6 ASN C 44 ? HIS C 61 ? ASN A 47 HIS A 64 1 ? 18 HELX_P HELX_P7 7 SER C 71 ? ARG C 89 ? SER A 74 ARG A 92 1 ? 19 HELX_P HELX_P8 8 ASP C 92 ? THR C 100 ? ASP A 95 THR A 103 1 ? 9 HELX_P HELX_P9 9 ASP C 103 ? LYS C 105 ? ASP A 106 LYS A 108 5 ? 3 HELX_P HELX_P10 10 GLN C 106 ? GLU C 119 ? GLN A 109 GLU A 122 1 ? 14 HELX_P HELX_P11 11 SER C 123 ? ALA C 150 ? SER A 126 ALA A 153 1 ? 28 HELX_P HELX_P12 12 PRO C 164 ? ASP C 178 ? PRO A 167 ASP A 181 1 ? 15 HELX_P HELX_P13 13 GLY C 179 ? THR C 199 ? GLY A 182 THR A 202 1 ? 21 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 2 N3 A ? ? 1_555 A DG 14 N1 A ? M DC 2 M DG 14 3_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 2 N4 A ? ? 1_555 A DG 14 O6 A ? M DC 2 M DG 14 3_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 O2 A ? ? 1_555 A DG 14 N2 A ? M DC 2 M DG 14 3_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 3 N3 A ? ? 1_555 A DA 13 N1 A ? M DT 3 M DA 13 3_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 3 O4 A ? ? 1_555 A DA 13 N6 A ? M DT 3 M DA 13 3_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 4 N1 A ? ? 1_555 A DT 12 N3 A ? M DA 4 M DT 12 3_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog7 hydrog ? ? A DT 5 N3 A ? ? 1_555 A DA 11 N1 A ? M DT 5 M DA 11 3_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 5 O4 A ? ? 1_555 A DA 11 N6 A ? M DT 5 M DA 11 3_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 6 N3 A ? ? 1_555 A DG 10 N1 A ? M DC 6 M DG 10 3_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 6 N4 A ? ? 1_555 A DG 10 O6 A ? M DC 6 M DG 10 3_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 6 O2 A ? ? 1_555 A DG 10 N2 A ? M DC 6 M DG 10 3_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 7 N1 A ? ? 1_555 A DT 9 N3 A ? M DA 7 M DT 9 3_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 7 N6 A ? ? 1_555 A DT 9 O4 A ? M DA 7 M DT 9 3_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 8 N1 A ? ? 1_555 A DA 8 N6 A ? M DA 8 M DA 8 3_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog15 hydrog ? ? A DA 8 N6 A ? ? 1_555 A DA 8 N1 A ? M DA 8 M DA 8 3_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog16 hydrog ? ? A DT 9 N3 A ? ? 1_555 A DA 7 N1 A ? M DT 9 M DA 7 3_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 9 O4 A ? ? 1_555 A DA 7 N6 A ? M DT 9 M DA 7 3_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 10 N1 A ? ? 1_555 A DC 6 N3 A ? M DG 10 M DC 6 3_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 10 N2 A ? ? 1_555 A DC 6 O2 A ? M DG 10 M DC 6 3_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 10 O6 A ? ? 1_555 A DC 6 N4 A ? M DG 10 M DC 6 3_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DA 11 N1 A ? ? 1_555 A DT 5 N3 A ? M DA 11 M DT 5 3_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DA 11 N6 A ? ? 1_555 A DT 5 O4 A ? M DA 11 M DT 5 3_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DT 12 N3 A ? ? 1_555 A DA 4 N1 A ? M DT 12 M DA 4 3_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog24 hydrog ? ? A DA 13 N1 A ? ? 1_555 A DT 3 N3 A ? M DA 13 M DT 3 3_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DA 13 N6 A ? ? 1_555 A DT 3 O4 A ? M DA 13 M DT 3 3_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 14 N1 A ? ? 1_555 A DC 2 N3 A ? M DG 14 M DC 2 3_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 14 N2 A ? ? 1_555 A DC 2 O2 A ? M DG 14 M DC 2 3_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 14 O6 A ? ? 1_555 A DC 2 N4 A ? M DG 14 M DC 2 3_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id IMD _struct_site.pdbx_auth_seq_id 1 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE IMD A 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HIS C 97 ? HIS A 100 . ? 1_555 ? 2 AC1 6 LEU C 98 ? LEU A 101 . ? 1_555 ? 3 AC1 6 THR C 100 ? THR A 103 . ? 1_555 ? 4 AC1 6 ARG C 101 ? ARG A 104 . ? 1_555 ? 5 AC1 6 GLU C 144 ? GLU A 147 . ? 3_555 ? 6 AC1 6 GLU C 147 ? GLU A 150 . ? 3_555 ? # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 C2 M DA 15 ? A 1_555 CD1 A TRP 43 ? ? 2_554 2.10 2 1 C2 N DG 15 ? B 1_555 CD1 A TRP 43 ? ? 2_554 2.10 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C4 N DT 1 ? B O4 N DT 1 ? B 1.343 1.228 0.115 0.009 N 2 1 "O3'" N DT 8 ? B P N DT 9 ? B 1.519 1.607 -0.088 0.012 Y 3 1 C6 N DG 15 ? B O6 N DG 15 ? B 1.339 1.237 0.102 0.009 N 4 1 CD A ARG 28 ? ? NE A ARG 28 ? ? 1.226 1.460 -0.234 0.017 N 5 1 CG A ASP 53 ? ? OD2 A ASP 53 ? ? 1.054 1.249 -0.195 0.023 N 6 1 N A ASN 123 ? ? CA A ASN 123 ? ? 1.716 1.459 0.257 0.020 N 7 1 CA A ASN 123 ? ? CB A ASN 123 ? ? 1.181 1.527 -0.346 0.026 N 8 1 CA A ASN 123 ? ? C A ASN 123 ? ? 1.873 1.525 0.348 0.026 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" M DC 1 ? A "C1'" M DC 1 ? A N1 M DC 1 ? A 110.56 108.30 2.26 0.30 N 2 1 "O4'" M DA 15 ? A "C1'" M DA 15 ? A N9 M DA 15 ? A 110.38 108.30 2.08 0.30 N 3 1 "O4'" N DT 1 ? B "C1'" N DT 1 ? B N1 N DT 1 ? B 110.56 108.30 2.26 0.30 N 4 1 N1 N DT 1 ? B C2 N DT 1 ? B N3 N DT 1 ? B 119.33 114.60 4.73 0.60 N 5 1 C2 N DT 1 ? B N3 N DT 1 ? B C4 N DT 1 ? B 120.04 127.20 -7.16 0.60 N 6 1 N3 N DT 1 ? B C4 N DT 1 ? B C5 N DT 1 ? B 121.84 115.20 6.64 0.60 N 7 1 C5 N DT 1 ? B C4 N DT 1 ? B O4 N DT 1 ? B 120.30 124.90 -4.60 0.70 N 8 1 "O5'" N DT 8 ? B P N DT 8 ? B OP2 N DT 8 ? B 96.08 105.70 -9.62 0.90 N 9 1 P N DT 8 ? B "O5'" N DT 8 ? B "C5'" N DT 8 ? B 105.36 120.90 -15.54 1.60 N 10 1 "O3'" N DT 8 ? B P N DT 9 ? B "O5'" N DT 9 ? B 89.44 104.00 -14.56 1.90 Y 11 1 "O4'" N DG 15 ? B "C1'" N DG 15 ? B N9 N DG 15 ? B 110.38 108.30 2.08 0.30 N 12 1 C6 N DG 15 ? B N1 N DG 15 ? B C2 N DG 15 ? B 118.72 125.10 -6.38 0.60 N 13 1 N1 N DG 15 ? B C2 N DG 15 ? B N3 N DG 15 ? B 129.37 123.90 5.47 0.60 N 14 1 C5 N DG 15 ? B C6 N DG 15 ? B N1 N DG 15 ? B 117.50 111.50 6.00 0.50 N 15 1 C5 N DG 15 ? B C6 N DG 15 ? B O6 N DG 15 ? B 124.20 128.60 -4.40 0.60 N 16 1 CD A ARG 28 ? ? NE A ARG 28 ? ? CZ A ARG 28 ? ? 158.96 123.60 35.36 1.40 N 17 1 NE A ARG 28 ? ? CZ A ARG 28 ? ? NH1 A ARG 28 ? ? 99.67 120.30 -20.63 0.50 N 18 1 NE A ARG 28 ? ? CZ A ARG 28 ? ? NH2 A ARG 28 ? ? 140.71 120.30 20.41 0.50 N 19 1 OD1 A ASP 53 ? ? CG A ASP 53 ? ? OD2 A ASP 53 ? ? 139.33 123.30 16.03 1.90 N 20 1 CB A ASP 53 ? ? CG A ASP 53 ? ? OD2 A ASP 53 ? ? 98.93 118.30 -19.37 0.90 N 21 1 CA A ASN 123 ? ? CB A ASN 123 ? ? CG A ASN 123 ? ? 97.46 113.40 -15.94 2.20 N 22 1 N A ASN 123 ? ? CA A ASN 123 ? ? C A ASN 123 ? ? 89.70 111.00 -21.30 2.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 5 ? ? -44.72 -168.38 2 1 GLU A 19 ? ? -91.46 -66.23 3 1 PRO A 39 ? ? -58.97 -3.42 4 1 ALA A 153 ? ? -72.35 -106.39 5 1 ASN A 165 ? ? -153.95 53.77 6 1 PRO A 168 ? ? -35.91 -72.55 7 1 ASP A 181 ? ? 108.30 -10.28 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A THR 156 ? C THR 153 2 1 Y 1 A ASP 157 ? C ASP 154 3 1 Y 1 A ARG 158 ? C ARG 155 4 1 Y 1 A PRO 159 ? C PRO 156 5 1 Y 1 A ALA 160 ? C ALA 157 6 1 Y 1 A ALA 161 ? C ALA 158 7 1 Y 1 A PRO 162 ? C PRO 159 8 1 Y 1 A ASP 163 ? C ASP 160 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DA OP3 O N N 74 DA P P N N 75 DA OP1 O N N 76 DA OP2 O N N 77 DA "O5'" O N N 78 DA "C5'" C N N 79 DA "C4'" C N R 80 DA "O4'" O N N 81 DA "C3'" C N S 82 DA "O3'" O N N 83 DA "C2'" C N N 84 DA "C1'" C N R 85 DA N9 N Y N 86 DA C8 C Y N 87 DA N7 N Y N 88 DA C5 C Y N 89 DA C6 C Y N 90 DA N6 N N N 91 DA N1 N Y N 92 DA C2 C Y N 93 DA N3 N Y N 94 DA C4 C Y N 95 DA HOP3 H N N 96 DA HOP2 H N N 97 DA "H5'" H N N 98 DA "H5''" H N N 99 DA "H4'" H N N 100 DA "H3'" H N N 101 DA "HO3'" H N N 102 DA "H2'" H N N 103 DA "H2''" H N N 104 DA "H1'" H N N 105 DA H8 H N N 106 DA H61 H N N 107 DA H62 H N N 108 DA H2 H N N 109 DC OP3 O N N 110 DC P P N N 111 DC OP1 O N N 112 DC OP2 O N N 113 DC "O5'" O N N 114 DC "C5'" C N N 115 DC "C4'" C N R 116 DC "O4'" O N N 117 DC "C3'" C N S 118 DC "O3'" O N N 119 DC "C2'" C N N 120 DC "C1'" C N R 121 DC N1 N N N 122 DC C2 C N N 123 DC O2 O N N 124 DC N3 N N N 125 DC C4 C N N 126 DC N4 N N N 127 DC C5 C N N 128 DC C6 C N N 129 DC HOP3 H N N 130 DC HOP2 H N N 131 DC "H5'" H N N 132 DC "H5''" H N N 133 DC "H4'" H N N 134 DC "H3'" H N N 135 DC "HO3'" H N N 136 DC "H2'" H N N 137 DC "H2''" H N N 138 DC "H1'" H N N 139 DC H41 H N N 140 DC H42 H N N 141 DC H5 H N N 142 DC H6 H N N 143 DG OP3 O N N 144 DG P P N N 145 DG OP1 O N N 146 DG OP2 O N N 147 DG "O5'" O N N 148 DG "C5'" C N N 149 DG "C4'" C N R 150 DG "O4'" O N N 151 DG "C3'" C N S 152 DG "O3'" O N N 153 DG "C2'" C N N 154 DG "C1'" C N R 155 DG N9 N Y N 156 DG C8 C Y N 157 DG N7 N Y N 158 DG C5 C Y N 159 DG C6 C N N 160 DG O6 O N N 161 DG N1 N N N 162 DG C2 C N N 163 DG N2 N N N 164 DG N3 N N N 165 DG C4 C Y N 166 DG HOP3 H N N 167 DG HOP2 H N N 168 DG "H5'" H N N 169 DG "H5''" H N N 170 DG "H4'" H N N 171 DG "H3'" H N N 172 DG "HO3'" H N N 173 DG "H2'" H N N 174 DG "H2''" H N N 175 DG "H1'" H N N 176 DG H8 H N N 177 DG H1 H N N 178 DG H21 H N N 179 DG H22 H N N 180 DT OP3 O N N 181 DT P P N N 182 DT OP1 O N N 183 DT OP2 O N N 184 DT "O5'" O N N 185 DT "C5'" C N N 186 DT "C4'" C N R 187 DT "O4'" O N N 188 DT "C3'" C N S 189 DT "O3'" O N N 190 DT "C2'" C N N 191 DT "C1'" C N R 192 DT N1 N N N 193 DT C2 C N N 194 DT O2 O N N 195 DT N3 N N N 196 DT C4 C N N 197 DT O4 O N N 198 DT C5 C N N 199 DT C7 C N N 200 DT C6 C N N 201 DT HOP3 H N N 202 DT HOP2 H N N 203 DT "H5'" H N N 204 DT "H5''" H N N 205 DT "H4'" H N N 206 DT "H3'" H N N 207 DT "HO3'" H N N 208 DT "H2'" H N N 209 DT "H2''" H N N 210 DT "H1'" H N N 211 DT H3 H N N 212 DT H71 H N N 213 DT H72 H N N 214 DT H73 H N N 215 DT H6 H N N 216 GLN N N N N 217 GLN CA C N S 218 GLN C C N N 219 GLN O O N N 220 GLN CB C N N 221 GLN CG C N N 222 GLN CD C N N 223 GLN OE1 O N N 224 GLN NE2 N N N 225 GLN OXT O N N 226 GLN H H N N 227 GLN H2 H N N 228 GLN HA H N N 229 GLN HB2 H N N 230 GLN HB3 H N N 231 GLN HG2 H N N 232 GLN HG3 H N N 233 GLN HE21 H N N 234 GLN HE22 H N N 235 GLN HXT H N N 236 GLU N N N N 237 GLU CA C N S 238 GLU C C N N 239 GLU O O N N 240 GLU CB C N N 241 GLU CG C N N 242 GLU CD C N N 243 GLU OE1 O N N 244 GLU OE2 O N N 245 GLU OXT O N N 246 GLU H H N N 247 GLU H2 H N N 248 GLU HA H N N 249 GLU HB2 H N N 250 GLU HB3 H N N 251 GLU HG2 H N N 252 GLU HG3 H N N 253 GLU HE2 H N N 254 GLU HXT H N N 255 GLY N N N N 256 GLY CA C N N 257 GLY C C N N 258 GLY O O N N 259 GLY OXT O N N 260 GLY H H N N 261 GLY H2 H N N 262 GLY HA2 H N N 263 GLY HA3 H N N 264 GLY HXT H N N 265 HIS N N N N 266 HIS CA C N S 267 HIS C C N N 268 HIS O O N N 269 HIS CB C N N 270 HIS CG C Y N 271 HIS ND1 N Y N 272 HIS CD2 C Y N 273 HIS CE1 C Y N 274 HIS NE2 N Y N 275 HIS OXT O N N 276 HIS H H N N 277 HIS H2 H N N 278 HIS HA H N N 279 HIS HB2 H N N 280 HIS HB3 H N N 281 HIS HD1 H N N 282 HIS HD2 H N N 283 HIS HE1 H N N 284 HIS HE2 H N N 285 HIS HXT H N N 286 HOH O O N N 287 HOH H1 H N N 288 HOH H2 H N N 289 ILE N N N N 290 ILE CA C N S 291 ILE C C N N 292 ILE O O N N 293 ILE CB C N S 294 ILE CG1 C N N 295 ILE CG2 C N N 296 ILE CD1 C N N 297 ILE OXT O N N 298 ILE H H N N 299 ILE H2 H N N 300 ILE HA H N N 301 ILE HB H N N 302 ILE HG12 H N N 303 ILE HG13 H N N 304 ILE HG21 H N N 305 ILE HG22 H N N 306 ILE HG23 H N N 307 ILE HD11 H N N 308 ILE HD12 H N N 309 ILE HD13 H N N 310 ILE HXT H N N 311 IMD N1 N Y N 312 IMD C2 C Y N 313 IMD N3 N Y N 314 IMD C4 C Y N 315 IMD C5 C Y N 316 IMD HN1 H N N 317 IMD H2 H N N 318 IMD HN3 H N N 319 IMD H4 H N N 320 IMD H5 H N N 321 LEU N N N N 322 LEU CA C N S 323 LEU C C N N 324 LEU O O N N 325 LEU CB C N N 326 LEU CG C N N 327 LEU CD1 C N N 328 LEU CD2 C N N 329 LEU OXT O N N 330 LEU H H N N 331 LEU H2 H N N 332 LEU HA H N N 333 LEU HB2 H N N 334 LEU HB3 H N N 335 LEU HG H N N 336 LEU HD11 H N N 337 LEU HD12 H N N 338 LEU HD13 H N N 339 LEU HD21 H N N 340 LEU HD22 H N N 341 LEU HD23 H N N 342 LEU HXT H N N 343 LYS N N N N 344 LYS CA C N S 345 LYS C C N N 346 LYS O O N N 347 LYS CB C N N 348 LYS CG C N N 349 LYS CD C N N 350 LYS CE C N N 351 LYS NZ N N N 352 LYS OXT O N N 353 LYS H H N N 354 LYS H2 H N N 355 LYS HA H N N 356 LYS HB2 H N N 357 LYS HB3 H N N 358 LYS HG2 H N N 359 LYS HG3 H N N 360 LYS HD2 H N N 361 LYS HD3 H N N 362 LYS HE2 H N N 363 LYS HE3 H N N 364 LYS HZ1 H N N 365 LYS HZ2 H N N 366 LYS HZ3 H N N 367 LYS HXT H N N 368 MET N N N N 369 MET CA C N S 370 MET C C N N 371 MET O O N N 372 MET CB C N N 373 MET CG C N N 374 MET SD S N N 375 MET CE C N N 376 MET OXT O N N 377 MET H H N N 378 MET H2 H N N 379 MET HA H N N 380 MET HB2 H N N 381 MET HB3 H N N 382 MET HG2 H N N 383 MET HG3 H N N 384 MET HE1 H N N 385 MET HE2 H N N 386 MET HE3 H N N 387 MET HXT H N N 388 PHE N N N N 389 PHE CA C N S 390 PHE C C N N 391 PHE O O N N 392 PHE CB C N N 393 PHE CG C Y N 394 PHE CD1 C Y N 395 PHE CD2 C Y N 396 PHE CE1 C Y N 397 PHE CE2 C Y N 398 PHE CZ C Y N 399 PHE OXT O N N 400 PHE H H N N 401 PHE H2 H N N 402 PHE HA H N N 403 PHE HB2 H N N 404 PHE HB3 H N N 405 PHE HD1 H N N 406 PHE HD2 H N N 407 PHE HE1 H N N 408 PHE HE2 H N N 409 PHE HZ H N N 410 PHE HXT H N N 411 PRO N N N N 412 PRO CA C N S 413 PRO C C N N 414 PRO O O N N 415 PRO CB C N N 416 PRO CG C N N 417 PRO CD C N N 418 PRO OXT O N N 419 PRO H H N N 420 PRO HA H N N 421 PRO HB2 H N N 422 PRO HB3 H N N 423 PRO HG2 H N N 424 PRO HG3 H N N 425 PRO HD2 H N N 426 PRO HD3 H N N 427 PRO HXT H N N 428 SER N N N N 429 SER CA C N S 430 SER C C N N 431 SER O O N N 432 SER CB C N N 433 SER OG O N N 434 SER OXT O N N 435 SER H H N N 436 SER H2 H N N 437 SER HA H N N 438 SER HB2 H N N 439 SER HB3 H N N 440 SER HG H N N 441 SER HXT H N N 442 THR N N N N 443 THR CA C N S 444 THR C C N N 445 THR O O N N 446 THR CB C N R 447 THR OG1 O N N 448 THR CG2 C N N 449 THR OXT O N N 450 THR H H N N 451 THR H2 H N N 452 THR HA H N N 453 THR HB H N N 454 THR HG1 H N N 455 THR HG21 H N N 456 THR HG22 H N N 457 THR HG23 H N N 458 THR HXT H N N 459 TRP N N N N 460 TRP CA C N S 461 TRP C C N N 462 TRP O O N N 463 TRP CB C N N 464 TRP CG C Y N 465 TRP CD1 C Y N 466 TRP CD2 C Y N 467 TRP NE1 N Y N 468 TRP CE2 C Y N 469 TRP CE3 C Y N 470 TRP CZ2 C Y N 471 TRP CZ3 C Y N 472 TRP CH2 C Y N 473 TRP OXT O N N 474 TRP H H N N 475 TRP H2 H N N 476 TRP HA H N N 477 TRP HB2 H N N 478 TRP HB3 H N N 479 TRP HD1 H N N 480 TRP HE1 H N N 481 TRP HE3 H N N 482 TRP HZ2 H N N 483 TRP HZ3 H N N 484 TRP HH2 H N N 485 TRP HXT H N N 486 TYR N N N N 487 TYR CA C N S 488 TYR C C N N 489 TYR O O N N 490 TYR CB C N N 491 TYR CG C Y N 492 TYR CD1 C Y N 493 TYR CD2 C Y N 494 TYR CE1 C Y N 495 TYR CE2 C Y N 496 TYR CZ C Y N 497 TYR OH O N N 498 TYR OXT O N N 499 TYR H H N N 500 TYR H2 H N N 501 TYR HA H N N 502 TYR HB2 H N N 503 TYR HB3 H N N 504 TYR HD1 H N N 505 TYR HD2 H N N 506 TYR HE1 H N N 507 TYR HE2 H N N 508 TYR HH H N N 509 TYR HXT H N N 510 VAL N N N N 511 VAL CA C N S 512 VAL C C N N 513 VAL O O N N 514 VAL CB C N N 515 VAL CG1 C N N 516 VAL CG2 C N N 517 VAL OXT O N N 518 VAL H H N N 519 VAL H2 H N N 520 VAL HA H N N 521 VAL HB H N N 522 VAL HG11 H N N 523 VAL HG12 H N N 524 VAL HG13 H N N 525 VAL HG21 H N N 526 VAL HG22 H N N 527 VAL HG23 H N N 528 VAL HXT H N N 529 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DA OP3 P sing N N 70 DA OP3 HOP3 sing N N 71 DA P OP1 doub N N 72 DA P OP2 sing N N 73 DA P "O5'" sing N N 74 DA OP2 HOP2 sing N N 75 DA "O5'" "C5'" sing N N 76 DA "C5'" "C4'" sing N N 77 DA "C5'" "H5'" sing N N 78 DA "C5'" "H5''" sing N N 79 DA "C4'" "O4'" sing N N 80 DA "C4'" "C3'" sing N N 81 DA "C4'" "H4'" sing N N 82 DA "O4'" "C1'" sing N N 83 DA "C3'" "O3'" sing N N 84 DA "C3'" "C2'" sing N N 85 DA "C3'" "H3'" sing N N 86 DA "O3'" "HO3'" sing N N 87 DA "C2'" "C1'" sing N N 88 DA "C2'" "H2'" sing N N 89 DA "C2'" "H2''" sing N N 90 DA "C1'" N9 sing N N 91 DA "C1'" "H1'" sing N N 92 DA N9 C8 sing Y N 93 DA N9 C4 sing Y N 94 DA C8 N7 doub Y N 95 DA C8 H8 sing N N 96 DA N7 C5 sing Y N 97 DA C5 C6 sing Y N 98 DA C5 C4 doub Y N 99 DA C6 N6 sing N N 100 DA C6 N1 doub Y N 101 DA N6 H61 sing N N 102 DA N6 H62 sing N N 103 DA N1 C2 sing Y N 104 DA C2 N3 doub Y N 105 DA C2 H2 sing N N 106 DA N3 C4 sing Y N 107 DC OP3 P sing N N 108 DC OP3 HOP3 sing N N 109 DC P OP1 doub N N 110 DC P OP2 sing N N 111 DC P "O5'" sing N N 112 DC OP2 HOP2 sing N N 113 DC "O5'" "C5'" sing N N 114 DC "C5'" "C4'" sing N N 115 DC "C5'" "H5'" sing N N 116 DC "C5'" "H5''" sing N N 117 DC "C4'" "O4'" sing N N 118 DC "C4'" "C3'" sing N N 119 DC "C4'" "H4'" sing N N 120 DC "O4'" "C1'" sing N N 121 DC "C3'" "O3'" sing N N 122 DC "C3'" "C2'" sing N N 123 DC "C3'" "H3'" sing N N 124 DC "O3'" "HO3'" sing N N 125 DC "C2'" "C1'" sing N N 126 DC "C2'" "H2'" sing N N 127 DC "C2'" "H2''" sing N N 128 DC "C1'" N1 sing N N 129 DC "C1'" "H1'" sing N N 130 DC N1 C2 sing N N 131 DC N1 C6 sing N N 132 DC C2 O2 doub N N 133 DC C2 N3 sing N N 134 DC N3 C4 doub N N 135 DC C4 N4 sing N N 136 DC C4 C5 sing N N 137 DC N4 H41 sing N N 138 DC N4 H42 sing N N 139 DC C5 C6 doub N N 140 DC C5 H5 sing N N 141 DC C6 H6 sing N N 142 DG OP3 P sing N N 143 DG OP3 HOP3 sing N N 144 DG P OP1 doub N N 145 DG P OP2 sing N N 146 DG P "O5'" sing N N 147 DG OP2 HOP2 sing N N 148 DG "O5'" "C5'" sing N N 149 DG "C5'" "C4'" sing N N 150 DG "C5'" "H5'" sing N N 151 DG "C5'" "H5''" sing N N 152 DG "C4'" "O4'" sing N N 153 DG "C4'" "C3'" sing N N 154 DG "C4'" "H4'" sing N N 155 DG "O4'" "C1'" sing N N 156 DG "C3'" "O3'" sing N N 157 DG "C3'" "C2'" sing N N 158 DG "C3'" "H3'" sing N N 159 DG "O3'" "HO3'" sing N N 160 DG "C2'" "C1'" sing N N 161 DG "C2'" "H2'" sing N N 162 DG "C2'" "H2''" sing N N 163 DG "C1'" N9 sing N N 164 DG "C1'" "H1'" sing N N 165 DG N9 C8 sing Y N 166 DG N9 C4 sing Y N 167 DG C8 N7 doub Y N 168 DG C8 H8 sing N N 169 DG N7 C5 sing Y N 170 DG C5 C6 sing N N 171 DG C5 C4 doub Y N 172 DG C6 O6 doub N N 173 DG C6 N1 sing N N 174 DG N1 C2 sing N N 175 DG N1 H1 sing N N 176 DG C2 N2 sing N N 177 DG C2 N3 doub N N 178 DG N2 H21 sing N N 179 DG N2 H22 sing N N 180 DG N3 C4 sing N N 181 DT OP3 P sing N N 182 DT OP3 HOP3 sing N N 183 DT P OP1 doub N N 184 DT P OP2 sing N N 185 DT P "O5'" sing N N 186 DT OP2 HOP2 sing N N 187 DT "O5'" "C5'" sing N N 188 DT "C5'" "C4'" sing N N 189 DT "C5'" "H5'" sing N N 190 DT "C5'" "H5''" sing N N 191 DT "C4'" "O4'" sing N N 192 DT "C4'" "C3'" sing N N 193 DT "C4'" "H4'" sing N N 194 DT "O4'" "C1'" sing N N 195 DT "C3'" "O3'" sing N N 196 DT "C3'" "C2'" sing N N 197 DT "C3'" "H3'" sing N N 198 DT "O3'" "HO3'" sing N N 199 DT "C2'" "C1'" sing N N 200 DT "C2'" "H2'" sing N N 201 DT "C2'" "H2''" sing N N 202 DT "C1'" N1 sing N N 203 DT "C1'" "H1'" sing N N 204 DT N1 C2 sing N N 205 DT N1 C6 sing N N 206 DT C2 O2 doub N N 207 DT C2 N3 sing N N 208 DT N3 C4 sing N N 209 DT N3 H3 sing N N 210 DT C4 O4 doub N N 211 DT C4 C5 sing N N 212 DT C5 C7 sing N N 213 DT C5 C6 doub N N 214 DT C7 H71 sing N N 215 DT C7 H72 sing N N 216 DT C7 H73 sing N N 217 DT C6 H6 sing N N 218 GLN N CA sing N N 219 GLN N H sing N N 220 GLN N H2 sing N N 221 GLN CA C sing N N 222 GLN CA CB sing N N 223 GLN CA HA sing N N 224 GLN C O doub N N 225 GLN C OXT sing N N 226 GLN CB CG sing N N 227 GLN CB HB2 sing N N 228 GLN CB HB3 sing N N 229 GLN CG CD sing N N 230 GLN CG HG2 sing N N 231 GLN CG HG3 sing N N 232 GLN CD OE1 doub N N 233 GLN CD NE2 sing N N 234 GLN NE2 HE21 sing N N 235 GLN NE2 HE22 sing N N 236 GLN OXT HXT sing N N 237 GLU N CA sing N N 238 GLU N H sing N N 239 GLU N H2 sing N N 240 GLU CA C sing N N 241 GLU CA CB sing N N 242 GLU CA HA sing N N 243 GLU C O doub N N 244 GLU C OXT sing N N 245 GLU CB CG sing N N 246 GLU CB HB2 sing N N 247 GLU CB HB3 sing N N 248 GLU CG CD sing N N 249 GLU CG HG2 sing N N 250 GLU CG HG3 sing N N 251 GLU CD OE1 doub N N 252 GLU CD OE2 sing N N 253 GLU OE2 HE2 sing N N 254 GLU OXT HXT sing N N 255 GLY N CA sing N N 256 GLY N H sing N N 257 GLY N H2 sing N N 258 GLY CA C sing N N 259 GLY CA HA2 sing N N 260 GLY CA HA3 sing N N 261 GLY C O doub N N 262 GLY C OXT sing N N 263 GLY OXT HXT sing N N 264 HIS N CA sing N N 265 HIS N H sing N N 266 HIS N H2 sing N N 267 HIS CA C sing N N 268 HIS CA CB sing N N 269 HIS CA HA sing N N 270 HIS C O doub N N 271 HIS C OXT sing N N 272 HIS CB CG sing N N 273 HIS CB HB2 sing N N 274 HIS CB HB3 sing N N 275 HIS CG ND1 sing Y N 276 HIS CG CD2 doub Y N 277 HIS ND1 CE1 doub Y N 278 HIS ND1 HD1 sing N N 279 HIS CD2 NE2 sing Y N 280 HIS CD2 HD2 sing N N 281 HIS CE1 NE2 sing Y N 282 HIS CE1 HE1 sing N N 283 HIS NE2 HE2 sing N N 284 HIS OXT HXT sing N N 285 HOH O H1 sing N N 286 HOH O H2 sing N N 287 ILE N CA sing N N 288 ILE N H sing N N 289 ILE N H2 sing N N 290 ILE CA C sing N N 291 ILE CA CB sing N N 292 ILE CA HA sing N N 293 ILE C O doub N N 294 ILE C OXT sing N N 295 ILE CB CG1 sing N N 296 ILE CB CG2 sing N N 297 ILE CB HB sing N N 298 ILE CG1 CD1 sing N N 299 ILE CG1 HG12 sing N N 300 ILE CG1 HG13 sing N N 301 ILE CG2 HG21 sing N N 302 ILE CG2 HG22 sing N N 303 ILE CG2 HG23 sing N N 304 ILE CD1 HD11 sing N N 305 ILE CD1 HD12 sing N N 306 ILE CD1 HD13 sing N N 307 ILE OXT HXT sing N N 308 IMD N1 C2 sing Y N 309 IMD N1 C5 sing Y N 310 IMD N1 HN1 sing N N 311 IMD C2 N3 doub Y N 312 IMD C2 H2 sing N N 313 IMD N3 C4 sing Y N 314 IMD N3 HN3 sing N N 315 IMD C4 C5 doub Y N 316 IMD C4 H4 sing N N 317 IMD C5 H5 sing N N 318 LEU N CA sing N N 319 LEU N H sing N N 320 LEU N H2 sing N N 321 LEU CA C sing N N 322 LEU CA CB sing N N 323 LEU CA HA sing N N 324 LEU C O doub N N 325 LEU C OXT sing N N 326 LEU CB CG sing N N 327 LEU CB HB2 sing N N 328 LEU CB HB3 sing N N 329 LEU CG CD1 sing N N 330 LEU CG CD2 sing N N 331 LEU CG HG sing N N 332 LEU CD1 HD11 sing N N 333 LEU CD1 HD12 sing N N 334 LEU CD1 HD13 sing N N 335 LEU CD2 HD21 sing N N 336 LEU CD2 HD22 sing N N 337 LEU CD2 HD23 sing N N 338 LEU OXT HXT sing N N 339 LYS N CA sing N N 340 LYS N H sing N N 341 LYS N H2 sing N N 342 LYS CA C sing N N 343 LYS CA CB sing N N 344 LYS CA HA sing N N 345 LYS C O doub N N 346 LYS C OXT sing N N 347 LYS CB CG sing N N 348 LYS CB HB2 sing N N 349 LYS CB HB3 sing N N 350 LYS CG CD sing N N 351 LYS CG HG2 sing N N 352 LYS CG HG3 sing N N 353 LYS CD CE sing N N 354 LYS CD HD2 sing N N 355 LYS CD HD3 sing N N 356 LYS CE NZ sing N N 357 LYS CE HE2 sing N N 358 LYS CE HE3 sing N N 359 LYS NZ HZ1 sing N N 360 LYS NZ HZ2 sing N N 361 LYS NZ HZ3 sing N N 362 LYS OXT HXT sing N N 363 MET N CA sing N N 364 MET N H sing N N 365 MET N H2 sing N N 366 MET CA C sing N N 367 MET CA CB sing N N 368 MET CA HA sing N N 369 MET C O doub N N 370 MET C OXT sing N N 371 MET CB CG sing N N 372 MET CB HB2 sing N N 373 MET CB HB3 sing N N 374 MET CG SD sing N N 375 MET CG HG2 sing N N 376 MET CG HG3 sing N N 377 MET SD CE sing N N 378 MET CE HE1 sing N N 379 MET CE HE2 sing N N 380 MET CE HE3 sing N N 381 MET OXT HXT sing N N 382 PHE N CA sing N N 383 PHE N H sing N N 384 PHE N H2 sing N N 385 PHE CA C sing N N 386 PHE CA CB sing N N 387 PHE CA HA sing N N 388 PHE C O doub N N 389 PHE C OXT sing N N 390 PHE CB CG sing N N 391 PHE CB HB2 sing N N 392 PHE CB HB3 sing N N 393 PHE CG CD1 doub Y N 394 PHE CG CD2 sing Y N 395 PHE CD1 CE1 sing Y N 396 PHE CD1 HD1 sing N N 397 PHE CD2 CE2 doub Y N 398 PHE CD2 HD2 sing N N 399 PHE CE1 CZ doub Y N 400 PHE CE1 HE1 sing N N 401 PHE CE2 CZ sing Y N 402 PHE CE2 HE2 sing N N 403 PHE CZ HZ sing N N 404 PHE OXT HXT sing N N 405 PRO N CA sing N N 406 PRO N CD sing N N 407 PRO N H sing N N 408 PRO CA C sing N N 409 PRO CA CB sing N N 410 PRO CA HA sing N N 411 PRO C O doub N N 412 PRO C OXT sing N N 413 PRO CB CG sing N N 414 PRO CB HB2 sing N N 415 PRO CB HB3 sing N N 416 PRO CG CD sing N N 417 PRO CG HG2 sing N N 418 PRO CG HG3 sing N N 419 PRO CD HD2 sing N N 420 PRO CD HD3 sing N N 421 PRO OXT HXT sing N N 422 SER N CA sing N N 423 SER N H sing N N 424 SER N H2 sing N N 425 SER CA C sing N N 426 SER CA CB sing N N 427 SER CA HA sing N N 428 SER C O doub N N 429 SER C OXT sing N N 430 SER CB OG sing N N 431 SER CB HB2 sing N N 432 SER CB HB3 sing N N 433 SER OG HG sing N N 434 SER OXT HXT sing N N 435 THR N CA sing N N 436 THR N H sing N N 437 THR N H2 sing N N 438 THR CA C sing N N 439 THR CA CB sing N N 440 THR CA HA sing N N 441 THR C O doub N N 442 THR C OXT sing N N 443 THR CB OG1 sing N N 444 THR CB CG2 sing N N 445 THR CB HB sing N N 446 THR OG1 HG1 sing N N 447 THR CG2 HG21 sing N N 448 THR CG2 HG22 sing N N 449 THR CG2 HG23 sing N N 450 THR OXT HXT sing N N 451 TRP N CA sing N N 452 TRP N H sing N N 453 TRP N H2 sing N N 454 TRP CA C sing N N 455 TRP CA CB sing N N 456 TRP CA HA sing N N 457 TRP C O doub N N 458 TRP C OXT sing N N 459 TRP CB CG sing N N 460 TRP CB HB2 sing N N 461 TRP CB HB3 sing N N 462 TRP CG CD1 doub Y N 463 TRP CG CD2 sing Y N 464 TRP CD1 NE1 sing Y N 465 TRP CD1 HD1 sing N N 466 TRP CD2 CE2 doub Y N 467 TRP CD2 CE3 sing Y N 468 TRP NE1 CE2 sing Y N 469 TRP NE1 HE1 sing N N 470 TRP CE2 CZ2 sing Y N 471 TRP CE3 CZ3 doub Y N 472 TRP CE3 HE3 sing N N 473 TRP CZ2 CH2 doub Y N 474 TRP CZ2 HZ2 sing N N 475 TRP CZ3 CH2 sing Y N 476 TRP CZ3 HZ3 sing N N 477 TRP CH2 HH2 sing N N 478 TRP OXT HXT sing N N 479 TYR N CA sing N N 480 TYR N H sing N N 481 TYR N H2 sing N N 482 TYR CA C sing N N 483 TYR CA CB sing N N 484 TYR CA HA sing N N 485 TYR C O doub N N 486 TYR C OXT sing N N 487 TYR CB CG sing N N 488 TYR CB HB2 sing N N 489 TYR CB HB3 sing N N 490 TYR CG CD1 doub Y N 491 TYR CG CD2 sing Y N 492 TYR CD1 CE1 sing Y N 493 TYR CD1 HD1 sing N N 494 TYR CD2 CE2 doub Y N 495 TYR CD2 HD2 sing N N 496 TYR CE1 CZ doub Y N 497 TYR CE1 HE1 sing N N 498 TYR CE2 CZ sing Y N 499 TYR CE2 HE2 sing N N 500 TYR CZ OH sing N N 501 TYR OH HH sing N N 502 TYR OXT HXT sing N N 503 VAL N CA sing N N 504 VAL N H sing N N 505 VAL N H2 sing N N 506 VAL CA C sing N N 507 VAL CA CB sing N N 508 VAL CA HA sing N N 509 VAL C O doub N N 510 VAL C OXT sing N N 511 VAL CB CG1 sing N N 512 VAL CB CG2 sing N N 513 VAL CB HB sing N N 514 VAL CG1 HG11 sing N N 515 VAL CG1 HG12 sing N N 516 VAL CG1 HG13 sing N N 517 VAL CG2 HG21 sing N N 518 VAL CG2 HG22 sing N N 519 VAL CG2 HG23 sing N N 520 VAL OXT HXT sing N N 521 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1QPI 'b-form double helix' 1QPI 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 2 1_555 A DG 14 3_555 -0.216 0.089 0.035 -5.667 -4.308 -5.560 1 M_DC2:DG14_M M 2 ? M 14 ? 19 1 1 A DT 3 1_555 A DA 13 3_555 0.078 -0.438 -0.210 0.505 -10.831 0.911 2 M_DT3:DA13_M M 3 ? M 13 ? 20 1 1 A DA 4 1_555 A DT 12 3_555 0.627 0.387 0.119 -4.032 -11.751 4.100 3 M_DA4:DT12_M M 4 ? M 12 ? ? ? 1 A DT 5 1_555 A DA 11 3_555 -0.084 -0.091 -0.018 4.657 -4.837 4.432 4 M_DT5:DA11_M M 5 ? M 11 ? 20 1 1 A DC 6 1_555 A DG 10 3_555 0.763 -0.331 -0.584 11.305 -14.093 6.110 5 M_DC6:DG10_M M 6 ? M 10 ? 19 1 1 A DA 7 1_555 A DT 9 3_555 -0.218 -0.123 -0.273 1.403 -10.538 4.283 6 M_DA7:DT9_M M 7 ? M 9 ? 20 1 1 A DA 8 1_555 A DA 8 3_555 0.000 0.567 0.241 0.000 -21.845 11.002 7 M_DA8:DA8_M M 8 ? M 8 ? 1 1 1 A DT 9 1_555 A DA 7 3_555 0.218 -0.123 -0.273 -1.403 -10.538 4.283 8 M_DT9:DA7_M M 9 ? M 7 ? 20 1 1 A DG 10 1_555 A DC 6 3_555 -0.763 -0.331 -0.584 -11.305 -14.093 6.110 9 M_DG10:DC6_M M 10 ? M 6 ? 19 1 1 A DA 11 1_555 A DT 5 3_555 0.084 -0.091 -0.018 -4.657 -4.837 4.432 10 M_DA11:DT5_M M 11 ? M 5 ? 20 1 1 A DT 12 1_555 A DA 4 3_555 -0.627 0.387 0.119 4.032 -11.751 4.100 11 M_DT12:DA4_M M 12 ? M 4 ? ? ? 1 A DA 13 1_555 A DT 3 3_555 -0.078 -0.438 -0.210 -0.505 -10.831 0.911 12 M_DA13:DT3_M M 13 ? M 3 ? 20 1 1 A DG 14 1_555 A DC 2 3_555 0.216 0.089 0.035 5.667 -4.308 -5.560 13 M_DG14:DC2_M M 14 ? M 2 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 2 1_555 A DG 14 3_555 A DT 3 1_555 A DA 13 3_555 -0.765 -0.724 3.052 0.644 10.728 30.138 -3.056 1.494 2.630 19.855 -1.191 31.955 1 MM_DC2DT3:DA13DG14_MM M 2 ? M 14 ? M 3 ? M 13 ? 1 A DT 3 1_555 A DA 13 3_555 A DA 4 1_555 A DT 12 3_555 0.745 0.234 3.658 -0.767 -2.218 38.768 0.653 -1.224 3.625 -3.337 1.155 38.837 2 MM_DT3DA4:DT12DA13_MM M 3 ? M 13 ? M 4 ? M 12 ? 1 A DA 4 1_555 A DT 12 3_555 A DT 5 1_555 A DA 11 3_555 0.820 -0.860 3.145 0.306 1.916 25.661 -2.445 -1.758 3.083 4.307 -0.688 25.733 3 MM_DA4DT5:DA11DT12_MM M 4 ? M 12 ? M 5 ? M 11 ? 1 A DT 5 1_555 A DA 11 3_555 A DC 6 1_555 A DG 10 3_555 -0.482 -0.724 3.043 3.402 3.486 33.699 -1.744 1.318 2.894 5.974 -5.830 34.039 4 MM_DT5DC6:DG10DA11_MM M 5 ? M 11 ? M 6 ? M 10 ? 1 A DC 6 1_555 A DG 10 3_555 A DA 7 1_555 A DT 9 3_555 0.014 0.826 3.859 -1.551 4.073 33.089 0.631 -0.332 3.925 7.113 2.709 33.366 5 MM_DC6DA7:DT9DG10_MM M 6 ? M 10 ? M 7 ? M 9 ? 1 A DA 7 1_555 A DT 9 3_555 A DA 8 1_555 A DA 8 3_555 -0.253 -0.286 3.281 -4.084 5.780 31.266 -1.560 -0.278 3.185 10.555 7.459 32.038 6 MM_DA7DA8:DA8DT9_MM M 7 ? M 9 ? M 8 ? M 8 ? 1 A DA 8 1_555 A DA 8 3_555 A DT 9 1_555 A DA 7 3_555 0.253 -0.286 3.281 4.084 5.780 31.266 -1.560 0.278 3.185 10.555 -7.459 32.038 7 MM_DA8DT9:DA7DA8_MM M 8 ? M 8 ? M 9 ? M 7 ? 1 A DT 9 1_555 A DA 7 3_555 A DG 10 1_555 A DC 6 3_555 -0.014 0.826 3.859 1.551 4.073 33.089 0.631 0.332 3.925 7.113 -2.709 33.366 8 MM_DT9DG10:DC6DA7_MM M 9 ? M 7 ? M 10 ? M 6 ? 1 A DG 10 1_555 A DC 6 3_555 A DA 11 1_555 A DT 5 3_555 0.482 -0.724 3.043 -3.402 3.486 33.699 -1.744 -1.318 2.894 5.974 5.830 34.039 9 MM_DG10DA11:DT5DC6_MM M 10 ? M 6 ? M 11 ? M 5 ? 1 A DA 11 1_555 A DT 5 3_555 A DT 12 1_555 A DA 4 3_555 -0.820 -0.860 3.145 -0.306 1.916 25.661 -2.445 1.758 3.083 4.307 0.688 25.733 10 MM_DA11DT12:DA4DT5_MM M 11 ? M 5 ? M 12 ? M 4 ? 1 A DT 12 1_555 A DA 4 3_555 A DA 13 1_555 A DT 3 3_555 -0.745 0.234 3.658 0.767 -2.218 38.768 0.653 1.224 3.625 -3.337 -1.155 38.837 11 MM_DT12DA13:DT3DA4_MM M 12 ? M 4 ? M 13 ? M 3 ? 1 A DA 13 1_555 A DT 3 3_555 A DG 14 1_555 A DC 2 3_555 0.765 -0.724 3.052 -0.644 10.728 30.138 -3.056 -1.494 2.630 19.855 1.191 31.955 12 MM_DA13DG14:DC2DT3_MM M 13 ? M 3 ? M 14 ? M 2 ? # _atom_sites.entry_id 1QPI _atom_sites.fract_transf_matrix[1][1] 0.026288 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.005176 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010899 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_