data_1QRI # _entry.id 1QRI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1QRI pdb_00001qri 10.2210/pdb1qri/pdb NDB PD0063 ? ? RCSB RCSB009180 ? ? WWPDB D_1000009180 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-06-23 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-04 5 'Structure model' 1 4 2021-11-03 6 'Structure model' 1 5 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Database references' 5 6 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' database_2 3 5 'Structure model' struct_ref_seq_dif 4 6 'Structure model' chem_comp_atom 5 6 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.name' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1QRI _pdbx_database_status.recvd_initial_deposition_date 1999-06-14 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1CKQ '1.85 A COGNATE PRE-TRANSITION STATE ECORI-DNA CRYSTAL STRUCTURE' unspecified PDB 1QPS '2.5 A COGNATE POST-REACTIVE ECO-RI DNA CRYSTAL STRUCTURE IN THE PRESENCE OF MN2+' unspecified PDB 1QC9 '3.3 A CRYSTAL STRUCTURE OF ECO RI DIMER IN THE ABSENCE OF DNA' unspecified PDB 1CL8 ;1.80 A CRYSTAL STRUCTURE OF A COGNATE ECO RI-DNA COMPLEX WITH A BASE ANALOG SUBSTITUTION IN THE DNA RECOGNITION REGION ; unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Choi, J.' 1 'Kim, Y.' 2 'Greene, P.' 3 'Hager, P.' 4 'Rosenberg, J.M.' 5 # _citation.id primary _citation.title 'X-Ray Structure of the DNA-Eco RI Endonuclease Complexes with the ED144 and RK145 Mutations' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Choi, J.' 1 ? primary 'Kim, Y.' 2 ? primary 'Greene, P.' 3 ? primary 'Hager, P.' 4 ? primary 'Rosenberg, J.M.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*TP*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'" 3967.585 1 ? ? ? ? 2 polymer nat 'ECO RI ENDONCULEASE' 29158.143 1 ? GLU144ASP 'RESIDUES 17-277' ? 3 water nat water 18.015 52 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DT)(DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DC)(DG)' TCGCGAATTCGCG M ? 2 'polypeptide(L)' no no ;SQGVIGIFGDYAKAHDLAVGEVSKLVKKALSNEYPQLSFRYRDSIKKTEINEALKKIDPDLGGTLFVSNSSIKPDGGIVE VKDDYGEWRVVLVAEAKHQGKDIINIRNGLLVGKRGDQDLMAAGNAIDRSHKNISEIANFMLSESHFPYVLFLEGSNFLT ENISITRPDGRVVNLEYNSGILNRLDRLTAANYGMPINSNLCINKFVNHKDKSIMLQAASIYTQGDGREWDSKIMFEIMF DISTTSLRVLGRDLFEQLTSK ; ;SQGVIGIFGDYAKAHDLAVGEVSKLVKKALSNEYPQLSFRYRDSIKKTEINEALKKIDPDLGGTLFVSNSSIKPDGGIVE VKDDYGEWRVVLVAEAKHQGKDIINIRNGLLVGKRGDQDLMAAGNAIDRSHKNISEIANFMLSESHFPYVLFLEGSNFLT ENISITRPDGRVVNLEYNSGILNRLDRLTAANYGMPINSNLCINKFVNHKDKSIMLQAASIYTQGDGREWDSKIMFEIMF DISTTSLRVLGRDLFEQLTSK ; A ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DC n 1 3 DG n 1 4 DC n 1 5 DG n 1 6 DA n 1 7 DA n 1 8 DT n 1 9 DT n 1 10 DC n 1 11 DG n 1 12 DC n 1 13 DG n 2 1 SER n 2 2 GLN n 2 3 GLY n 2 4 VAL n 2 5 ILE n 2 6 GLY n 2 7 ILE n 2 8 PHE n 2 9 GLY n 2 10 ASP n 2 11 TYR n 2 12 ALA n 2 13 LYS n 2 14 ALA n 2 15 HIS n 2 16 ASP n 2 17 LEU n 2 18 ALA n 2 19 VAL n 2 20 GLY n 2 21 GLU n 2 22 VAL n 2 23 SER n 2 24 LYS n 2 25 LEU n 2 26 VAL n 2 27 LYS n 2 28 LYS n 2 29 ALA n 2 30 LEU n 2 31 SER n 2 32 ASN n 2 33 GLU n 2 34 TYR n 2 35 PRO n 2 36 GLN n 2 37 LEU n 2 38 SER n 2 39 PHE n 2 40 ARG n 2 41 TYR n 2 42 ARG n 2 43 ASP n 2 44 SER n 2 45 ILE n 2 46 LYS n 2 47 LYS n 2 48 THR n 2 49 GLU n 2 50 ILE n 2 51 ASN n 2 52 GLU n 2 53 ALA n 2 54 LEU n 2 55 LYS n 2 56 LYS n 2 57 ILE n 2 58 ASP n 2 59 PRO n 2 60 ASP n 2 61 LEU n 2 62 GLY n 2 63 GLY n 2 64 THR n 2 65 LEU n 2 66 PHE n 2 67 VAL n 2 68 SER n 2 69 ASN n 2 70 SER n 2 71 SER n 2 72 ILE n 2 73 LYS n 2 74 PRO n 2 75 ASP n 2 76 GLY n 2 77 GLY n 2 78 ILE n 2 79 VAL n 2 80 GLU n 2 81 VAL n 2 82 LYS n 2 83 ASP n 2 84 ASP n 2 85 TYR n 2 86 GLY n 2 87 GLU n 2 88 TRP n 2 89 ARG n 2 90 VAL n 2 91 VAL n 2 92 LEU n 2 93 VAL n 2 94 ALA n 2 95 GLU n 2 96 ALA n 2 97 LYS n 2 98 HIS n 2 99 GLN n 2 100 GLY n 2 101 LYS n 2 102 ASP n 2 103 ILE n 2 104 ILE n 2 105 ASN n 2 106 ILE n 2 107 ARG n 2 108 ASN n 2 109 GLY n 2 110 LEU n 2 111 LEU n 2 112 VAL n 2 113 GLY n 2 114 LYS n 2 115 ARG n 2 116 GLY n 2 117 ASP n 2 118 GLN n 2 119 ASP n 2 120 LEU n 2 121 MET n 2 122 ALA n 2 123 ALA n 2 124 GLY n 2 125 ASN n 2 126 ALA n 2 127 ILE n 2 128 ASP n 2 129 ARG n 2 130 SER n 2 131 HIS n 2 132 LYS n 2 133 ASN n 2 134 ILE n 2 135 SER n 2 136 GLU n 2 137 ILE n 2 138 ALA n 2 139 ASN n 2 140 PHE n 2 141 MET n 2 142 LEU n 2 143 SER n 2 144 GLU n 2 145 SER n 2 146 HIS n 2 147 PHE n 2 148 PRO n 2 149 TYR n 2 150 VAL n 2 151 LEU n 2 152 PHE n 2 153 LEU n 2 154 GLU n 2 155 GLY n 2 156 SER n 2 157 ASN n 2 158 PHE n 2 159 LEU n 2 160 THR n 2 161 GLU n 2 162 ASN n 2 163 ILE n 2 164 SER n 2 165 ILE n 2 166 THR n 2 167 ARG n 2 168 PRO n 2 169 ASP n 2 170 GLY n 2 171 ARG n 2 172 VAL n 2 173 VAL n 2 174 ASN n 2 175 LEU n 2 176 GLU n 2 177 TYR n 2 178 ASN n 2 179 SER n 2 180 GLY n 2 181 ILE n 2 182 LEU n 2 183 ASN n 2 184 ARG n 2 185 LEU n 2 186 ASP n 2 187 ARG n 2 188 LEU n 2 189 THR n 2 190 ALA n 2 191 ALA n 2 192 ASN n 2 193 TYR n 2 194 GLY n 2 195 MET n 2 196 PRO n 2 197 ILE n 2 198 ASN n 2 199 SER n 2 200 ASN n 2 201 LEU n 2 202 CYS n 2 203 ILE n 2 204 ASN n 2 205 LYS n 2 206 PHE n 2 207 VAL n 2 208 ASN n 2 209 HIS n 2 210 LYS n 2 211 ASP n 2 212 LYS n 2 213 SER n 2 214 ILE n 2 215 MET n 2 216 LEU n 2 217 GLN n 2 218 ALA n 2 219 ALA n 2 220 SER n 2 221 ILE n 2 222 TYR n 2 223 THR n 2 224 GLN n 2 225 GLY n 2 226 ASP n 2 227 GLY n 2 228 ARG n 2 229 GLU n 2 230 TRP n 2 231 ASP n 2 232 SER n 2 233 LYS n 2 234 ILE n 2 235 MET n 2 236 PHE n 2 237 GLU n 2 238 ILE n 2 239 MET n 2 240 PHE n 2 241 ASP n 2 242 ILE n 2 243 SER n 2 244 THR n 2 245 THR n 2 246 SER n 2 247 LEU n 2 248 ARG n 2 249 VAL n 2 250 LEU n 2 251 GLY n 2 252 ARG n 2 253 ASP n 2 254 LEU n 2 255 PHE n 2 256 GLU n 2 257 GLN n 2 258 LEU n 2 259 THR n 2 260 SER n 2 261 LYS n # _entity_src_nat.entity_id 2 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Escherichia coli' _entity_src_nat.pdbx_ncbi_taxonomy_id 562 _entity_src_nat.genus Escherichia _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT T M . n A 1 2 DC 2 2 2 DC C M . n A 1 3 DG 3 3 3 DG G M . n A 1 4 DC 4 4 4 DC C M . n A 1 5 DG 5 5 5 DG G M . n A 1 6 DA 6 6 6 DA A M . n A 1 7 DA 7 7 7 DA A M . n A 1 8 DT 8 8 8 DT T M . n A 1 9 DT 9 9 9 DT T M . n A 1 10 DC 10 10 10 DC C M . n A 1 11 DG 11 11 11 DG G M . n A 1 12 DC 12 12 12 DC C M . n A 1 13 DG 13 13 13 DG G M . n B 2 1 SER 1 17 17 SER SER A . n B 2 2 GLN 2 18 18 GLN GLN A . n B 2 3 GLY 3 19 19 GLY GLY A . n B 2 4 VAL 4 20 20 VAL VAL A . n B 2 5 ILE 5 21 21 ILE ILE A . n B 2 6 GLY 6 22 22 GLY GLY A . n B 2 7 ILE 7 23 23 ILE ILE A . n B 2 8 PHE 8 24 24 PHE PHE A . n B 2 9 GLY 9 25 25 GLY GLY A . n B 2 10 ASP 10 26 26 ASP ASP A . n B 2 11 TYR 11 27 27 TYR TYR A . n B 2 12 ALA 12 28 28 ALA ALA A . n B 2 13 LYS 13 29 29 LYS LYS A . n B 2 14 ALA 14 30 30 ALA ALA A . n B 2 15 HIS 15 31 31 HIS HIS A . n B 2 16 ASP 16 32 32 ASP ASP A . n B 2 17 LEU 17 33 33 LEU LEU A . n B 2 18 ALA 18 34 34 ALA ALA A . n B 2 19 VAL 19 35 35 VAL VAL A . n B 2 20 GLY 20 36 36 GLY GLY A . n B 2 21 GLU 21 37 37 GLU GLU A . n B 2 22 VAL 22 38 38 VAL VAL A . n B 2 23 SER 23 39 39 SER SER A . n B 2 24 LYS 24 40 40 LYS LYS A . n B 2 25 LEU 25 41 41 LEU LEU A . n B 2 26 VAL 26 42 42 VAL VAL A . n B 2 27 LYS 27 43 43 LYS LYS A . n B 2 28 LYS 28 44 44 LYS LYS A . n B 2 29 ALA 29 45 45 ALA ALA A . n B 2 30 LEU 30 46 46 LEU LEU A . n B 2 31 SER 31 47 47 SER SER A . n B 2 32 ASN 32 48 48 ASN ASN A . n B 2 33 GLU 33 49 49 GLU GLU A . n B 2 34 TYR 34 50 50 TYR TYR A . n B 2 35 PRO 35 51 51 PRO PRO A . n B 2 36 GLN 36 52 52 GLN GLN A . n B 2 37 LEU 37 53 53 LEU LEU A . n B 2 38 SER 38 54 54 SER SER A . n B 2 39 PHE 39 55 55 PHE PHE A . n B 2 40 ARG 40 56 56 ARG ARG A . n B 2 41 TYR 41 57 57 TYR TYR A . n B 2 42 ARG 42 58 58 ARG ARG A . n B 2 43 ASP 43 59 59 ASP ASP A . n B 2 44 SER 44 60 60 SER SER A . n B 2 45 ILE 45 61 61 ILE ILE A . n B 2 46 LYS 46 62 62 LYS LYS A . n B 2 47 LYS 47 63 63 LYS LYS A . n B 2 48 THR 48 64 64 THR THR A . n B 2 49 GLU 49 65 65 GLU GLU A . n B 2 50 ILE 50 66 66 ILE ILE A . n B 2 51 ASN 51 67 67 ASN ASN A . n B 2 52 GLU 52 68 68 GLU GLU A . n B 2 53 ALA 53 69 69 ALA ALA A . n B 2 54 LEU 54 70 70 LEU LEU A . n B 2 55 LYS 55 71 71 LYS LYS A . n B 2 56 LYS 56 72 72 LYS LYS A . n B 2 57 ILE 57 73 73 ILE ILE A . n B 2 58 ASP 58 74 74 ASP ASP A . n B 2 59 PRO 59 75 75 PRO PRO A . n B 2 60 ASP 60 76 76 ASP ASP A . n B 2 61 LEU 61 77 77 LEU LEU A . n B 2 62 GLY 62 78 78 GLY GLY A . n B 2 63 GLY 63 79 79 GLY GLY A . n B 2 64 THR 64 80 80 THR THR A . n B 2 65 LEU 65 81 81 LEU LEU A . n B 2 66 PHE 66 82 82 PHE PHE A . n B 2 67 VAL 67 83 83 VAL VAL A . n B 2 68 SER 68 84 84 SER SER A . n B 2 69 ASN 69 85 85 ASN ASN A . n B 2 70 SER 70 86 86 SER SER A . n B 2 71 SER 71 87 87 SER SER A . n B 2 72 ILE 72 88 88 ILE ILE A . n B 2 73 LYS 73 89 89 LYS LYS A . n B 2 74 PRO 74 90 90 PRO PRO A . n B 2 75 ASP 75 91 91 ASP ASP A . n B 2 76 GLY 76 92 92 GLY GLY A . n B 2 77 GLY 77 93 93 GLY GLY A . n B 2 78 ILE 78 94 94 ILE ILE A . n B 2 79 VAL 79 95 95 VAL VAL A . n B 2 80 GLU 80 96 96 GLU GLU A . n B 2 81 VAL 81 97 97 VAL VAL A . n B 2 82 LYS 82 98 98 LYS LYS A . n B 2 83 ASP 83 99 99 ASP ASP A . n B 2 84 ASP 84 100 100 ASP ASP A . n B 2 85 TYR 85 101 101 TYR TYR A . n B 2 86 GLY 86 102 102 GLY GLY A . n B 2 87 GLU 87 103 103 GLU GLU A . n B 2 88 TRP 88 104 104 TRP TRP A . n B 2 89 ARG 89 105 105 ARG ARG A . n B 2 90 VAL 90 106 106 VAL VAL A . n B 2 91 VAL 91 107 107 VAL VAL A . n B 2 92 LEU 92 108 108 LEU LEU A . n B 2 93 VAL 93 109 109 VAL VAL A . n B 2 94 ALA 94 110 110 ALA ALA A . n B 2 95 GLU 95 111 111 GLU GLU A . n B 2 96 ALA 96 112 112 ALA ALA A . n B 2 97 LYS 97 113 113 LYS LYS A . n B 2 98 HIS 98 114 114 HIS HIS A . n B 2 99 GLN 99 115 115 GLN GLN A . n B 2 100 GLY 100 116 116 GLY GLY A . n B 2 101 LYS 101 117 117 LYS LYS A . n B 2 102 ASP 102 118 118 ASP ASP A . n B 2 103 ILE 103 119 119 ILE ILE A . n B 2 104 ILE 104 120 120 ILE ILE A . n B 2 105 ASN 105 121 121 ASN ASN A . n B 2 106 ILE 106 122 122 ILE ILE A . n B 2 107 ARG 107 123 123 ARG ARG A . n B 2 108 ASN 108 124 124 ASN ASN A . n B 2 109 GLY 109 125 125 GLY GLY A . n B 2 110 LEU 110 126 126 LEU LEU A . n B 2 111 LEU 111 127 127 LEU LEU A . n B 2 112 VAL 112 128 128 VAL VAL A . n B 2 113 GLY 113 129 129 GLY GLY A . n B 2 114 LYS 114 130 130 LYS LYS A . n B 2 115 ARG 115 131 131 ARG ARG A . n B 2 116 GLY 116 132 132 GLY GLY A . n B 2 117 ASP 117 133 133 ASP ASP A . n B 2 118 GLN 118 134 134 GLN GLN A . n B 2 119 ASP 119 135 135 ASP ASP A . n B 2 120 LEU 120 136 136 LEU LEU A . n B 2 121 MET 121 137 137 MET MET A . n B 2 122 ALA 122 138 138 ALA ALA A . n B 2 123 ALA 123 139 139 ALA ALA A . n B 2 124 GLY 124 140 140 GLY GLY A . n B 2 125 ASN 125 141 141 ASN ASN A . n B 2 126 ALA 126 142 142 ALA ALA A . n B 2 127 ILE 127 143 143 ILE ILE A . n B 2 128 ASP 128 144 144 ASP ASP A . n B 2 129 ARG 129 145 145 ARG ARG A . n B 2 130 SER 130 146 146 SER SER A . n B 2 131 HIS 131 147 147 HIS HIS A . n B 2 132 LYS 132 148 148 LYS LYS A . n B 2 133 ASN 133 149 149 ASN ASN A . n B 2 134 ILE 134 150 150 ILE ILE A . n B 2 135 SER 135 151 151 SER SER A . n B 2 136 GLU 136 152 152 GLU GLU A . n B 2 137 ILE 137 153 153 ILE ILE A . n B 2 138 ALA 138 154 154 ALA ALA A . n B 2 139 ASN 139 155 155 ASN ASN A . n B 2 140 PHE 140 156 156 PHE PHE A . n B 2 141 MET 141 157 157 MET MET A . n B 2 142 LEU 142 158 158 LEU LEU A . n B 2 143 SER 143 159 159 SER SER A . n B 2 144 GLU 144 160 160 GLU GLU A . n B 2 145 SER 145 161 161 SER SER A . n B 2 146 HIS 146 162 162 HIS HIS A . n B 2 147 PHE 147 163 163 PHE PHE A . n B 2 148 PRO 148 164 164 PRO PRO A . n B 2 149 TYR 149 165 165 TYR TYR A . n B 2 150 VAL 150 166 166 VAL VAL A . n B 2 151 LEU 151 167 167 LEU LEU A . n B 2 152 PHE 152 168 168 PHE PHE A . n B 2 153 LEU 153 169 169 LEU LEU A . n B 2 154 GLU 154 170 170 GLU GLU A . n B 2 155 GLY 155 171 171 GLY GLY A . n B 2 156 SER 156 172 172 SER SER A . n B 2 157 ASN 157 173 173 ASN ASN A . n B 2 158 PHE 158 174 174 PHE PHE A . n B 2 159 LEU 159 175 175 LEU LEU A . n B 2 160 THR 160 176 176 THR THR A . n B 2 161 GLU 161 177 177 GLU GLU A . n B 2 162 ASN 162 178 178 ASN ASN A . n B 2 163 ILE 163 179 179 ILE ILE A . n B 2 164 SER 164 180 180 SER SER A . n B 2 165 ILE 165 181 181 ILE ILE A . n B 2 166 THR 166 182 182 THR THR A . n B 2 167 ARG 167 183 183 ARG ARG A . n B 2 168 PRO 168 184 184 PRO PRO A . n B 2 169 ASP 169 185 185 ASP ASP A . n B 2 170 GLY 170 186 186 GLY GLY A . n B 2 171 ARG 171 187 187 ARG ARG A . n B 2 172 VAL 172 188 188 VAL VAL A . n B 2 173 VAL 173 189 189 VAL VAL A . n B 2 174 ASN 174 190 190 ASN ASN A . n B 2 175 LEU 175 191 191 LEU LEU A . n B 2 176 GLU 176 192 192 GLU GLU A . n B 2 177 TYR 177 193 193 TYR TYR A . n B 2 178 ASN 178 194 194 ASN ASN A . n B 2 179 SER 179 195 195 SER SER A . n B 2 180 GLY 180 196 196 GLY GLY A . n B 2 181 ILE 181 197 197 ILE ILE A . n B 2 182 LEU 182 198 198 LEU LEU A . n B 2 183 ASN 183 199 199 ASN ASN A . n B 2 184 ARG 184 200 200 ARG ARG A . n B 2 185 LEU 185 201 201 LEU LEU A . n B 2 186 ASP 186 202 202 ASP ASP A . n B 2 187 ARG 187 203 203 ARG ARG A . n B 2 188 LEU 188 204 204 LEU LEU A . n B 2 189 THR 189 205 205 THR THR A . n B 2 190 ALA 190 206 206 ALA ALA A . n B 2 191 ALA 191 207 207 ALA ALA A . n B 2 192 ASN 192 208 208 ASN ASN A . n B 2 193 TYR 193 209 209 TYR TYR A . n B 2 194 GLY 194 210 210 GLY GLY A . n B 2 195 MET 195 211 211 MET MET A . n B 2 196 PRO 196 212 212 PRO PRO A . n B 2 197 ILE 197 213 213 ILE ILE A . n B 2 198 ASN 198 214 214 ASN ASN A . n B 2 199 SER 199 215 215 SER SER A . n B 2 200 ASN 200 216 216 ASN ASN A . n B 2 201 LEU 201 217 217 LEU LEU A . n B 2 202 CYS 202 218 218 CYS CYS A . n B 2 203 ILE 203 219 219 ILE ILE A . n B 2 204 ASN 204 220 220 ASN ASN A . n B 2 205 LYS 205 221 221 LYS LYS A . n B 2 206 PHE 206 222 222 PHE PHE A . n B 2 207 VAL 207 223 223 VAL VAL A . n B 2 208 ASN 208 224 224 ASN ASN A . n B 2 209 HIS 209 225 225 HIS HIS A . n B 2 210 LYS 210 226 226 LYS LYS A . n B 2 211 ASP 211 227 227 ASP ASP A . n B 2 212 LYS 212 228 228 LYS LYS A . n B 2 213 SER 213 229 229 SER SER A . n B 2 214 ILE 214 230 230 ILE ILE A . n B 2 215 MET 215 231 231 MET MET A . n B 2 216 LEU 216 232 232 LEU LEU A . n B 2 217 GLN 217 233 233 GLN GLN A . n B 2 218 ALA 218 234 234 ALA ALA A . n B 2 219 ALA 219 235 235 ALA ALA A . n B 2 220 SER 220 236 236 SER SER A . n B 2 221 ILE 221 237 237 ILE ILE A . n B 2 222 TYR 222 238 238 TYR TYR A . n B 2 223 THR 223 239 239 THR THR A . n B 2 224 GLN 224 240 240 GLN GLN A . n B 2 225 GLY 225 241 241 GLY GLY A . n B 2 226 ASP 226 242 242 ASP ASP A . n B 2 227 GLY 227 243 243 GLY GLY A . n B 2 228 ARG 228 244 244 ARG ARG A . n B 2 229 GLU 229 245 245 GLU GLU A . n B 2 230 TRP 230 246 246 TRP TRP A . n B 2 231 ASP 231 247 247 ASP ASP A . n B 2 232 SER 232 248 248 SER SER A . n B 2 233 LYS 233 249 249 LYS LYS A . n B 2 234 ILE 234 250 250 ILE ILE A . n B 2 235 MET 235 251 251 MET MET A . n B 2 236 PHE 236 252 252 PHE PHE A . n B 2 237 GLU 237 253 253 GLU GLU A . n B 2 238 ILE 238 254 254 ILE ILE A . n B 2 239 MET 239 255 255 MET MET A . n B 2 240 PHE 240 256 256 PHE PHE A . n B 2 241 ASP 241 257 257 ASP ASP A . n B 2 242 ILE 242 258 258 ILE ILE A . n B 2 243 SER 243 259 259 SER SER A . n B 2 244 THR 244 260 260 THR THR A . n B 2 245 THR 245 261 261 THR THR A . n B 2 246 SER 246 262 262 SER SER A . n B 2 247 LEU 247 263 263 LEU LEU A . n B 2 248 ARG 248 264 264 ARG ARG A . n B 2 249 VAL 249 265 265 VAL VAL A . n B 2 250 LEU 250 266 266 LEU LEU A . n B 2 251 GLY 251 267 267 GLY GLY A . n B 2 252 ARG 252 268 268 ARG ARG A . n B 2 253 ASP 253 269 269 ASP ASP A . n B 2 254 LEU 254 270 270 LEU LEU A . n B 2 255 PHE 255 271 271 PHE PHE A . n B 2 256 GLU 256 272 272 GLU GLU A . n B 2 257 GLN 257 273 273 GLN GLN A . n B 2 258 LEU 258 274 274 LEU LEU A . n B 2 259 THR 259 275 275 THR THR A . n B 2 260 SER 260 276 276 SER SER A . n B 2 261 LYS 261 277 277 LYS LYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 14 2 HOH HOH M . C 3 HOH 2 15 7 HOH HOH M . C 3 HOH 3 16 9 HOH HOH M . C 3 HOH 4 17 20 HOH HOH M . C 3 HOH 5 18 23 HOH HOH M . C 3 HOH 6 19 25 HOH HOH M . C 3 HOH 7 20 26 HOH HOH M . C 3 HOH 8 21 30 HOH HOH M . C 3 HOH 9 22 38 HOH HOH M . C 3 HOH 10 23 40 HOH HOH M . C 3 HOH 11 24 46 HOH HOH M . C 3 HOH 12 25 51 HOH HOH M . D 3 HOH 1 278 1 HOH HOH A . D 3 HOH 2 279 3 HOH HOH A . D 3 HOH 3 280 4 HOH HOH A . D 3 HOH 4 281 5 HOH HOH A . D 3 HOH 5 282 6 HOH HOH A . D 3 HOH 6 283 8 HOH HOH A . D 3 HOH 7 284 10 HOH HOH A . D 3 HOH 8 285 11 HOH HOH A . D 3 HOH 9 286 12 HOH HOH A . D 3 HOH 10 287 13 HOH HOH A . D 3 HOH 11 288 14 HOH HOH A . D 3 HOH 12 289 15 HOH HOH A . D 3 HOH 13 290 16 HOH HOH A . D 3 HOH 14 291 17 HOH HOH A . D 3 HOH 15 292 18 HOH HOH A . D 3 HOH 16 293 19 HOH HOH A . D 3 HOH 17 294 21 HOH HOH A . D 3 HOH 18 295 22 HOH HOH A . D 3 HOH 19 296 24 HOH HOH A . D 3 HOH 20 297 27 HOH HOH A . D 3 HOH 21 298 28 HOH HOH A . D 3 HOH 22 299 29 HOH HOH A . D 3 HOH 23 300 31 HOH HOH A . D 3 HOH 24 301 32 HOH HOH A . D 3 HOH 25 302 33 HOH HOH A . D 3 HOH 26 303 34 HOH HOH A . D 3 HOH 27 304 35 HOH HOH A . D 3 HOH 28 305 36 HOH HOH A . D 3 HOH 29 306 37 HOH HOH A . D 3 HOH 30 307 39 HOH HOH A . D 3 HOH 31 308 41 HOH HOH A . D 3 HOH 32 309 42 HOH HOH A . D 3 HOH 33 310 43 HOH HOH A . D 3 HOH 34 311 44 HOH HOH A . D 3 HOH 35 312 45 HOH HOH A . D 3 HOH 36 313 47 HOH HOH A . D 3 HOH 37 314 48 HOH HOH A . D 3 HOH 38 315 49 HOH HOH A . D 3 HOH 39 316 50 HOH HOH A . D 3 HOH 40 317 52 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' . ? 1 X-PLOR refinement 3.1 ? 2 X-GEN 'data reduction' . ? 3 X-GEN 'data scaling' . ? 4 X-PLOR phasing . ? 5 # _cell.entry_id 1QRI _cell.length_a 118.4 _cell.length_b 118.4 _cell.length_c 49.7 _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QRI _symmetry.space_group_name_H-M 'P 3 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting trigonal _symmetry.Int_Tables_number 150 # _exptl.entry_id 1QRI _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.02 _exptl_crystal.density_percent_sol 59.28 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_details ;PRECIPITANT: 40% PEG 400; 40 MM BTP; PH 8.0; RESERVOIR: 16% PEG 400; 40 MM BTP; PH 6.5; DROP: 5 UL PROTEIN, 2 UL DNA, 1 UL PPT, VAPOR DIFFUSION, SITTING DROP, temperature 277K ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'PEG 400' ? ? ? 1 2 1 BTP ? ? ? 1 3 1 PPT ? ? ? 1 4 2 'PEG 400' ? ? ? 1 5 2 BTP ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 298 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type 'SIEMENS-NICOLET X100' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1QRI _reflns.observed_criterion_sigma_I 2 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 47.6 _reflns.d_resolution_high 2.62 _reflns.number_obs 7508 _reflns.number_all 12291 _reflns.percent_possible_obs 61 _reflns.pdbx_Rmerge_I_obs 0.0720000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 17.04 _reflns.pdbx_redundancy 7 _reflns.R_free_details ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.62 _reflns_shell.d_res_low 2.78 _reflns_shell.percent_possible_all 10 _reflns_shell.Rmerge_I_obs 0.1330000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 1.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1QRI _refine.ls_number_reflns_obs 7040 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 3 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8 _refine.ls_d_res_high 2.6 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all 0.1640000 _refine.ls_R_factor_R_work 0.1640000 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details '52 WATER MOLECULES FIT INTO DIFFERENCE MAPS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH & HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2530 _refine_hist.pdbx_number_atoms_nucleic_acid 292 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 52 _refine_hist.number_atoms_total 2874 _refine_hist.d_res_high 2.6 _refine_hist.d_res_low 8 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.496 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1QRI _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1QRI _struct.title 'X-RAY STRUCTURE OF THE DNA-ECO RI ENDONUCLEASE COMPLEXES WITH AN E144D MUTATION AT 2.7 A' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1QRI _struct_keywords.pdbx_keywords HYDROLASE/DNA _struct_keywords.text 'RESTRICTION ENDONUCLEASE, DNA-PROTEIN COMPLEX, SITE-DIRECTED MUTATION, SEQUENCE-SPECIFIC, PROTEIN STRUCTURE, HYDROLASE-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 UNP T2E1_ECOLI 2 P00642 ? ? ? 2 PDB 1QRI 1 1QRI ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1QRI A 1 ? 261 ? P00642 16 ? 276 ? 17 277 2 2 1QRI M 1 ? 13 ? 1QRI 1 ? 13 ? 1 13 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 1QRI _struct_ref_seq_dif.mon_id ASP _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 128 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P00642 _struct_ref_seq_dif.db_mon_id GLU _struct_ref_seq_dif.pdbx_seq_db_seq_num 143 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 144 _struct_ref_seq_dif.pdbx_ordinal 1 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_555 y,x,-z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY B 3 ? ALA B 14 ? GLY A 19 ALA A 30 1 ? 12 HELX_P HELX_P2 2 ALA B 18 ? TYR B 34 ? ALA A 34 TYR A 50 1 ? 17 HELX_P HELX_P3 3 LYS B 47 ? LYS B 56 ? LYS A 63 LYS A 72 1 ? 10 HELX_P HELX_P4 4 LYS B 101 ? ASN B 108 ? LYS A 117 ASN A 124 1 ? 8 HELX_P HELX_P5 5 ASN B 125 ? ASP B 128 ? ASN A 141 ASP A 144 5 ? 4 HELX_P HELX_P6 6 ARG B 129 ? MET B 141 ? ARG A 145 MET A 157 1 ? 13 HELX_P HELX_P7 7 ARG B 171 ? LEU B 175 ? ARG A 187 LEU A 191 5 ? 5 HELX_P HELX_P8 8 ASP B 231 ? LEU B 250 ? ASP A 247 LEU A 266 1 ? 20 HELX_P HELX_P9 9 GLY B 251 ? ASP B 253 ? GLY A 267 ASP A 269 5 ? 3 HELX_P HELX_P10 10 LEU B 254 ? SER B 260 ? LEU A 270 SER A 276 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 2 N3 ? ? ? 1_555 A DG 13 N1 ? ? M DC 2 M DG 13 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 2 N4 ? ? ? 1_555 A DG 13 O6 ? ? M DC 2 M DG 13 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 O2 ? ? ? 1_555 A DG 13 N2 ? ? M DC 2 M DG 13 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 12 N3 ? ? M DG 3 M DC 12 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 12 O2 ? ? M DG 3 M DC 12 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 12 N4 ? ? M DG 3 M DC 12 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 4 N3 ? ? ? 1_555 A DG 11 N1 ? ? M DC 4 M DG 11 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 4 N4 ? ? ? 1_555 A DG 11 O6 ? ? M DC 4 M DG 11 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 4 O2 ? ? ? 1_555 A DG 11 N2 ? ? M DC 4 M DG 11 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 5 N1 ? ? ? 1_555 A DC 10 N3 ? ? M DG 5 M DC 10 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DC 10 O2 ? ? M DG 5 M DC 10 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 5 O6 ? ? ? 1_555 A DC 10 N4 ? ? M DG 5 M DC 10 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 6 N1 ? ? ? 1_555 A DT 9 N3 ? ? M DA 6 M DT 9 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 6 N6 ? ? ? 1_555 A DT 9 O4 ? ? M DA 6 M DT 9 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 7 N1 ? ? ? 1_555 A DT 8 N3 ? ? M DA 7 M DT 8 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 7 N6 ? ? ? 1_555 A DT 8 O4 ? ? M DA 7 M DT 8 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 8 N3 ? ? ? 1_555 A DA 7 N1 ? ? M DT 8 M DA 7 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 8 O4 ? ? ? 1_555 A DA 7 N6 ? ? M DT 8 M DA 7 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 9 N3 ? ? ? 1_555 A DA 6 N1 ? ? M DT 9 M DA 6 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 9 O4 ? ? ? 1_555 A DA 6 N6 ? ? M DT 9 M DA 6 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 10 N3 ? ? ? 1_555 A DG 5 N1 ? ? M DC 10 M DG 5 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 10 N4 ? ? ? 1_555 A DG 5 O6 ? ? M DC 10 M DG 5 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 10 O2 ? ? ? 1_555 A DG 5 N2 ? ? M DC 10 M DG 5 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 11 N1 ? ? ? 1_555 A DC 4 N3 ? ? M DG 11 M DC 4 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 11 N2 ? ? ? 1_555 A DC 4 O2 ? ? M DG 11 M DC 4 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 11 O6 ? ? ? 1_555 A DC 4 N4 ? ? M DG 11 M DC 4 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 12 N3 ? ? ? 1_555 A DG 3 N1 ? ? M DC 12 M DG 3 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 12 N4 ? ? ? 1_555 A DG 3 O6 ? ? M DC 12 M DG 3 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 12 O2 ? ? ? 1_555 A DG 3 N2 ? ? M DC 12 M DG 3 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 13 N1 ? ? ? 1_555 A DC 2 N3 ? ? M DG 13 M DC 2 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 13 N2 ? ? ? 1_555 A DC 2 O2 ? ? M DG 13 M DC 2 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 13 O6 ? ? ? 1_555 A DC 2 N4 ? ? M DG 13 M DC 2 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? C ? 2 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER B 38 ? ARG B 42 ? SER A 54 ARG A 58 A 2 ILE B 78 ? LYS B 82 ? ILE A 94 LYS A 98 A 3 TRP B 88 ? HIS B 98 ? TRP A 104 HIS A 114 A 4 TYR B 149 ? GLU B 154 ? TYR A 165 GLU A 170 A 5 SER B 220 ? THR B 223 ? SER A 236 THR A 239 B 1 ILE B 45 ? LYS B 46 ? ILE A 61 LYS A 62 B 2 SER B 71 ? ILE B 72 ? SER A 87 ILE A 88 C 1 ILE B 163 ? THR B 166 ? ILE A 179 THR A 182 C 2 VAL B 172 ? LEU B 175 ? VAL A 188 LEU A 191 D 1 LYS B 205 ? VAL B 207 ? LYS A 221 VAL A 223 D 2 ILE B 214 ? LEU B 216 ? ILE A 230 LEU A 232 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ARG B 42 ? N ARG A 58 O ILE B 78 ? O ILE A 94 A 2 3 O VAL B 81 ? O VAL A 97 N ARG B 89 ? N ARG A 105 A 3 4 O VAL B 93 ? O VAL A 109 N VAL B 150 ? N VAL A 166 A 4 5 N LEU B 151 ? N LEU A 167 O SER B 220 ? O SER A 236 B 1 2 O ILE B 45 ? O ILE A 61 N ILE B 72 ? N ILE A 88 C 1 2 O ILE B 165 ? O ILE A 181 N VAL B 173 ? N VAL A 189 D 1 2 O VAL B 207 ? O VAL A 223 N ILE B 214 ? N ILE A 230 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O6 M DG 5 ? ? 1_555 H42 M DC 10 ? ? 4_555 1.52 2 1 H62 M DA 6 ? ? 1_555 O4 M DT 9 ? ? 4_555 1.55 3 1 O6 M DG 3 ? ? 1_555 H42 M DC 12 ? ? 4_555 1.56 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O3'" M DC 2 ? ? P M DG 3 ? ? "O5'" M DG 3 ? ? 78.07 104.00 -25.93 1.90 Y 2 1 "O3'" M DC 2 ? ? P M DG 3 ? ? OP1 M DG 3 ? ? 132.51 110.50 22.01 1.10 Y 3 1 "O4'" M DG 3 ? ? "C1'" M DG 3 ? ? "C2'" M DG 3 ? ? 97.48 105.90 -8.42 0.80 N 4 1 "O3'" M DG 3 ? ? P M DC 4 ? ? OP2 M DC 4 ? ? 120.48 110.50 9.98 1.10 Y 5 1 "C3'" M DC 4 ? ? "C2'" M DC 4 ? ? "C1'" M DC 4 ? ? 110.17 102.50 7.67 1.20 N 6 1 "O4'" M DG 5 ? ? "C4'" M DG 5 ? ? "C3'" M DG 5 ? ? 96.87 104.50 -7.63 0.40 N 7 1 "C4'" M DA 6 ? ? "C3'" M DA 6 ? ? "C2'" M DA 6 ? ? 96.74 102.20 -5.46 0.70 N 8 1 "O3'" M DA 6 ? ? P M DA 7 ? ? "O5'" M DA 7 ? ? 89.22 104.00 -14.78 1.90 Y 9 1 "O3'" M DA 6 ? ? P M DA 7 ? ? OP2 M DA 7 ? ? 74.77 105.20 -30.43 2.20 Y 10 1 "O3'" M DA 6 ? ? P M DA 7 ? ? OP1 M DA 7 ? ? 149.14 110.50 38.64 1.10 Y 11 1 "O4'" M DA 7 ? ? "C1'" M DA 7 ? ? "C2'" M DA 7 ? ? 100.64 105.90 -5.26 0.80 N 12 1 "O3'" M DA 7 ? ? P M DT 8 ? ? OP1 M DT 8 ? ? 117.54 110.50 7.04 1.10 Y 13 1 C6 M DT 8 ? ? C5 M DT 8 ? ? C7 M DT 8 ? ? 117.81 122.90 -5.09 0.60 N 14 1 "O3'" M DT 8 ? ? P M DT 9 ? ? OP2 M DT 9 ? ? 123.35 110.50 12.85 1.10 Y 15 1 C6 M DT 9 ? ? C5 M DT 9 ? ? C7 M DT 9 ? ? 117.52 122.90 -5.38 0.60 N 16 1 "O4'" M DC 10 ? ? "C1'" M DC 10 ? ? "C2'" M DC 10 ? ? 99.41 105.90 -6.49 0.80 N 17 1 "O4'" M DC 10 ? ? "C1'" M DC 10 ? ? N1 M DC 10 ? ? 111.02 108.30 2.72 0.30 N 18 1 "O3'" M DC 10 ? ? P M DG 11 ? ? "O5'" M DG 11 ? ? 82.72 104.00 -21.28 1.90 Y 19 1 "O3'" M DC 10 ? ? P M DG 11 ? ? OP1 M DG 11 ? ? 136.87 110.50 26.37 1.10 Y 20 1 "O4'" M DG 11 ? ? "C1'" M DG 11 ? ? N9 M DG 11 ? ? 103.53 108.00 -4.47 0.70 N 21 1 "O4'" M DC 12 ? ? "C1'" M DC 12 ? ? "C2'" M DC 12 ? ? 98.32 105.90 -7.58 0.80 N 22 1 "O4'" M DC 12 ? ? "C1'" M DC 12 ? ? N1 M DC 12 ? ? 112.07 108.30 3.77 0.30 N 23 1 "O3'" M DC 12 ? ? P M DG 13 ? ? "O5'" M DG 13 ? ? 85.05 104.00 -18.95 1.90 Y 24 1 "O3'" M DC 12 ? ? P M DG 13 ? ? OP2 M DG 13 ? ? 72.81 105.20 -32.39 2.20 Y 25 1 "O3'" M DC 12 ? ? P M DG 13 ? ? OP1 M DG 13 ? ? 155.82 110.50 45.32 1.10 Y 26 1 "O4'" M DG 13 ? ? "C1'" M DG 13 ? ? "C2'" M DG 13 ? ? 99.42 105.90 -6.48 0.80 N 27 1 "O4'" M DG 13 ? ? "C1'" M DG 13 ? ? N9 M DG 13 ? ? 113.45 108.30 5.15 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 85 ? ? -100.67 48.45 2 1 ASP A 91 ? ? -66.70 1.78 3 1 ASN A 124 ? ? -91.68 -153.86 4 1 VAL A 128 ? ? -92.40 -160.00 5 1 PRO A 184 ? ? -62.76 11.60 6 1 HIS A 225 ? ? -159.28 -65.85 7 1 LYS A 226 ? ? -96.61 -126.87 8 1 LYS A 228 ? ? -49.28 92.63 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id DG _pdbx_validate_planes.auth_asym_id M _pdbx_validate_planes.auth_seq_id 5 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.049 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 HOH O O N N 301 HOH H1 H N N 302 HOH H2 H N N 303 ILE N N N N 304 ILE CA C N S 305 ILE C C N N 306 ILE O O N N 307 ILE CB C N S 308 ILE CG1 C N N 309 ILE CG2 C N N 310 ILE CD1 C N N 311 ILE OXT O N N 312 ILE H H N N 313 ILE H2 H N N 314 ILE HA H N N 315 ILE HB H N N 316 ILE HG12 H N N 317 ILE HG13 H N N 318 ILE HG21 H N N 319 ILE HG22 H N N 320 ILE HG23 H N N 321 ILE HD11 H N N 322 ILE HD12 H N N 323 ILE HD13 H N N 324 ILE HXT H N N 325 LEU N N N N 326 LEU CA C N S 327 LEU C C N N 328 LEU O O N N 329 LEU CB C N N 330 LEU CG C N N 331 LEU CD1 C N N 332 LEU CD2 C N N 333 LEU OXT O N N 334 LEU H H N N 335 LEU H2 H N N 336 LEU HA H N N 337 LEU HB2 H N N 338 LEU HB3 H N N 339 LEU HG H N N 340 LEU HD11 H N N 341 LEU HD12 H N N 342 LEU HD13 H N N 343 LEU HD21 H N N 344 LEU HD22 H N N 345 LEU HD23 H N N 346 LEU HXT H N N 347 LYS N N N N 348 LYS CA C N S 349 LYS C C N N 350 LYS O O N N 351 LYS CB C N N 352 LYS CG C N N 353 LYS CD C N N 354 LYS CE C N N 355 LYS NZ N N N 356 LYS OXT O N N 357 LYS H H N N 358 LYS H2 H N N 359 LYS HA H N N 360 LYS HB2 H N N 361 LYS HB3 H N N 362 LYS HG2 H N N 363 LYS HG3 H N N 364 LYS HD2 H N N 365 LYS HD3 H N N 366 LYS HE2 H N N 367 LYS HE3 H N N 368 LYS HZ1 H N N 369 LYS HZ2 H N N 370 LYS HZ3 H N N 371 LYS HXT H N N 372 MET N N N N 373 MET CA C N S 374 MET C C N N 375 MET O O N N 376 MET CB C N N 377 MET CG C N N 378 MET SD S N N 379 MET CE C N N 380 MET OXT O N N 381 MET H H N N 382 MET H2 H N N 383 MET HA H N N 384 MET HB2 H N N 385 MET HB3 H N N 386 MET HG2 H N N 387 MET HG3 H N N 388 MET HE1 H N N 389 MET HE2 H N N 390 MET HE3 H N N 391 MET HXT H N N 392 PHE N N N N 393 PHE CA C N S 394 PHE C C N N 395 PHE O O N N 396 PHE CB C N N 397 PHE CG C Y N 398 PHE CD1 C Y N 399 PHE CD2 C Y N 400 PHE CE1 C Y N 401 PHE CE2 C Y N 402 PHE CZ C Y N 403 PHE OXT O N N 404 PHE H H N N 405 PHE H2 H N N 406 PHE HA H N N 407 PHE HB2 H N N 408 PHE HB3 H N N 409 PHE HD1 H N N 410 PHE HD2 H N N 411 PHE HE1 H N N 412 PHE HE2 H N N 413 PHE HZ H N N 414 PHE HXT H N N 415 PRO N N N N 416 PRO CA C N S 417 PRO C C N N 418 PRO O O N N 419 PRO CB C N N 420 PRO CG C N N 421 PRO CD C N N 422 PRO OXT O N N 423 PRO H H N N 424 PRO HA H N N 425 PRO HB2 H N N 426 PRO HB3 H N N 427 PRO HG2 H N N 428 PRO HG3 H N N 429 PRO HD2 H N N 430 PRO HD3 H N N 431 PRO HXT H N N 432 SER N N N N 433 SER CA C N S 434 SER C C N N 435 SER O O N N 436 SER CB C N N 437 SER OG O N N 438 SER OXT O N N 439 SER H H N N 440 SER H2 H N N 441 SER HA H N N 442 SER HB2 H N N 443 SER HB3 H N N 444 SER HG H N N 445 SER HXT H N N 446 THR N N N N 447 THR CA C N S 448 THR C C N N 449 THR O O N N 450 THR CB C N R 451 THR OG1 O N N 452 THR CG2 C N N 453 THR OXT O N N 454 THR H H N N 455 THR H2 H N N 456 THR HA H N N 457 THR HB H N N 458 THR HG1 H N N 459 THR HG21 H N N 460 THR HG22 H N N 461 THR HG23 H N N 462 THR HXT H N N 463 TRP N N N N 464 TRP CA C N S 465 TRP C C N N 466 TRP O O N N 467 TRP CB C N N 468 TRP CG C Y N 469 TRP CD1 C Y N 470 TRP CD2 C Y N 471 TRP NE1 N Y N 472 TRP CE2 C Y N 473 TRP CE3 C Y N 474 TRP CZ2 C Y N 475 TRP CZ3 C Y N 476 TRP CH2 C Y N 477 TRP OXT O N N 478 TRP H H N N 479 TRP H2 H N N 480 TRP HA H N N 481 TRP HB2 H N N 482 TRP HB3 H N N 483 TRP HD1 H N N 484 TRP HE1 H N N 485 TRP HE3 H N N 486 TRP HZ2 H N N 487 TRP HZ3 H N N 488 TRP HH2 H N N 489 TRP HXT H N N 490 TYR N N N N 491 TYR CA C N S 492 TYR C C N N 493 TYR O O N N 494 TYR CB C N N 495 TYR CG C Y N 496 TYR CD1 C Y N 497 TYR CD2 C Y N 498 TYR CE1 C Y N 499 TYR CE2 C Y N 500 TYR CZ C Y N 501 TYR OH O N N 502 TYR OXT O N N 503 TYR H H N N 504 TYR H2 H N N 505 TYR HA H N N 506 TYR HB2 H N N 507 TYR HB3 H N N 508 TYR HD1 H N N 509 TYR HD2 H N N 510 TYR HE1 H N N 511 TYR HE2 H N N 512 TYR HH H N N 513 TYR HXT H N N 514 VAL N N N N 515 VAL CA C N S 516 VAL C C N N 517 VAL O O N N 518 VAL CB C N N 519 VAL CG1 C N N 520 VAL CG2 C N N 521 VAL OXT O N N 522 VAL H H N N 523 VAL H2 H N N 524 VAL HA H N N 525 VAL HB H N N 526 VAL HG11 H N N 527 VAL HG12 H N N 528 VAL HG13 H N N 529 VAL HG21 H N N 530 VAL HG22 H N N 531 VAL HG23 H N N 532 VAL HXT H N N 533 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 HOH O H1 sing N N 299 HOH O H2 sing N N 300 ILE N CA sing N N 301 ILE N H sing N N 302 ILE N H2 sing N N 303 ILE CA C sing N N 304 ILE CA CB sing N N 305 ILE CA HA sing N N 306 ILE C O doub N N 307 ILE C OXT sing N N 308 ILE CB CG1 sing N N 309 ILE CB CG2 sing N N 310 ILE CB HB sing N N 311 ILE CG1 CD1 sing N N 312 ILE CG1 HG12 sing N N 313 ILE CG1 HG13 sing N N 314 ILE CG2 HG21 sing N N 315 ILE CG2 HG22 sing N N 316 ILE CG2 HG23 sing N N 317 ILE CD1 HD11 sing N N 318 ILE CD1 HD12 sing N N 319 ILE CD1 HD13 sing N N 320 ILE OXT HXT sing N N 321 LEU N CA sing N N 322 LEU N H sing N N 323 LEU N H2 sing N N 324 LEU CA C sing N N 325 LEU CA CB sing N N 326 LEU CA HA sing N N 327 LEU C O doub N N 328 LEU C OXT sing N N 329 LEU CB CG sing N N 330 LEU CB HB2 sing N N 331 LEU CB HB3 sing N N 332 LEU CG CD1 sing N N 333 LEU CG CD2 sing N N 334 LEU CG HG sing N N 335 LEU CD1 HD11 sing N N 336 LEU CD1 HD12 sing N N 337 LEU CD1 HD13 sing N N 338 LEU CD2 HD21 sing N N 339 LEU CD2 HD22 sing N N 340 LEU CD2 HD23 sing N N 341 LEU OXT HXT sing N N 342 LYS N CA sing N N 343 LYS N H sing N N 344 LYS N H2 sing N N 345 LYS CA C sing N N 346 LYS CA CB sing N N 347 LYS CA HA sing N N 348 LYS C O doub N N 349 LYS C OXT sing N N 350 LYS CB CG sing N N 351 LYS CB HB2 sing N N 352 LYS CB HB3 sing N N 353 LYS CG CD sing N N 354 LYS CG HG2 sing N N 355 LYS CG HG3 sing N N 356 LYS CD CE sing N N 357 LYS CD HD2 sing N N 358 LYS CD HD3 sing N N 359 LYS CE NZ sing N N 360 LYS CE HE2 sing N N 361 LYS CE HE3 sing N N 362 LYS NZ HZ1 sing N N 363 LYS NZ HZ2 sing N N 364 LYS NZ HZ3 sing N N 365 LYS OXT HXT sing N N 366 MET N CA sing N N 367 MET N H sing N N 368 MET N H2 sing N N 369 MET CA C sing N N 370 MET CA CB sing N N 371 MET CA HA sing N N 372 MET C O doub N N 373 MET C OXT sing N N 374 MET CB CG sing N N 375 MET CB HB2 sing N N 376 MET CB HB3 sing N N 377 MET CG SD sing N N 378 MET CG HG2 sing N N 379 MET CG HG3 sing N N 380 MET SD CE sing N N 381 MET CE HE1 sing N N 382 MET CE HE2 sing N N 383 MET CE HE3 sing N N 384 MET OXT HXT sing N N 385 PHE N CA sing N N 386 PHE N H sing N N 387 PHE N H2 sing N N 388 PHE CA C sing N N 389 PHE CA CB sing N N 390 PHE CA HA sing N N 391 PHE C O doub N N 392 PHE C OXT sing N N 393 PHE CB CG sing N N 394 PHE CB HB2 sing N N 395 PHE CB HB3 sing N N 396 PHE CG CD1 doub Y N 397 PHE CG CD2 sing Y N 398 PHE CD1 CE1 sing Y N 399 PHE CD1 HD1 sing N N 400 PHE CD2 CE2 doub Y N 401 PHE CD2 HD2 sing N N 402 PHE CE1 CZ doub Y N 403 PHE CE1 HE1 sing N N 404 PHE CE2 CZ sing Y N 405 PHE CE2 HE2 sing N N 406 PHE CZ HZ sing N N 407 PHE OXT HXT sing N N 408 PRO N CA sing N N 409 PRO N CD sing N N 410 PRO N H sing N N 411 PRO CA C sing N N 412 PRO CA CB sing N N 413 PRO CA HA sing N N 414 PRO C O doub N N 415 PRO C OXT sing N N 416 PRO CB CG sing N N 417 PRO CB HB2 sing N N 418 PRO CB HB3 sing N N 419 PRO CG CD sing N N 420 PRO CG HG2 sing N N 421 PRO CG HG3 sing N N 422 PRO CD HD2 sing N N 423 PRO CD HD3 sing N N 424 PRO OXT HXT sing N N 425 SER N CA sing N N 426 SER N H sing N N 427 SER N H2 sing N N 428 SER CA C sing N N 429 SER CA CB sing N N 430 SER CA HA sing N N 431 SER C O doub N N 432 SER C OXT sing N N 433 SER CB OG sing N N 434 SER CB HB2 sing N N 435 SER CB HB3 sing N N 436 SER OG HG sing N N 437 SER OXT HXT sing N N 438 THR N CA sing N N 439 THR N H sing N N 440 THR N H2 sing N N 441 THR CA C sing N N 442 THR CA CB sing N N 443 THR CA HA sing N N 444 THR C O doub N N 445 THR C OXT sing N N 446 THR CB OG1 sing N N 447 THR CB CG2 sing N N 448 THR CB HB sing N N 449 THR OG1 HG1 sing N N 450 THR CG2 HG21 sing N N 451 THR CG2 HG22 sing N N 452 THR CG2 HG23 sing N N 453 THR OXT HXT sing N N 454 TRP N CA sing N N 455 TRP N H sing N N 456 TRP N H2 sing N N 457 TRP CA C sing N N 458 TRP CA CB sing N N 459 TRP CA HA sing N N 460 TRP C O doub N N 461 TRP C OXT sing N N 462 TRP CB CG sing N N 463 TRP CB HB2 sing N N 464 TRP CB HB3 sing N N 465 TRP CG CD1 doub Y N 466 TRP CG CD2 sing Y N 467 TRP CD1 NE1 sing Y N 468 TRP CD1 HD1 sing N N 469 TRP CD2 CE2 doub Y N 470 TRP CD2 CE3 sing Y N 471 TRP NE1 CE2 sing Y N 472 TRP NE1 HE1 sing N N 473 TRP CE2 CZ2 sing Y N 474 TRP CE3 CZ3 doub Y N 475 TRP CE3 HE3 sing N N 476 TRP CZ2 CH2 doub Y N 477 TRP CZ2 HZ2 sing N N 478 TRP CZ3 CH2 sing Y N 479 TRP CZ3 HZ3 sing N N 480 TRP CH2 HH2 sing N N 481 TRP OXT HXT sing N N 482 TYR N CA sing N N 483 TYR N H sing N N 484 TYR N H2 sing N N 485 TYR CA C sing N N 486 TYR CA CB sing N N 487 TYR CA HA sing N N 488 TYR C O doub N N 489 TYR C OXT sing N N 490 TYR CB CG sing N N 491 TYR CB HB2 sing N N 492 TYR CB HB3 sing N N 493 TYR CG CD1 doub Y N 494 TYR CG CD2 sing Y N 495 TYR CD1 CE1 sing Y N 496 TYR CD1 HD1 sing N N 497 TYR CD2 CE2 doub Y N 498 TYR CD2 HD2 sing N N 499 TYR CE1 CZ doub Y N 500 TYR CE1 HE1 sing N N 501 TYR CE2 CZ sing Y N 502 TYR CE2 HE2 sing N N 503 TYR CZ OH sing N N 504 TYR OH HH sing N N 505 TYR OXT HXT sing N N 506 VAL N CA sing N N 507 VAL N H sing N N 508 VAL N H2 sing N N 509 VAL CA C sing N N 510 VAL CA CB sing N N 511 VAL CA HA sing N N 512 VAL C O doub N N 513 VAL C OXT sing N N 514 VAL CB CG1 sing N N 515 VAL CB CG2 sing N N 516 VAL CB HB sing N N 517 VAL CG1 HG11 sing N N 518 VAL CG1 HG12 sing N N 519 VAL CG1 HG13 sing N N 520 VAL CG2 HG21 sing N N 521 VAL CG2 HG22 sing N N 522 VAL CG2 HG23 sing N N 523 VAL OXT HXT sing N N 524 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1QRI 'double helix' 1QRI 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 2 1_555 A DG 13 4_555 0.235 -0.316 0.277 -22.127 -0.705 -3.100 1 M_DC2:DG13_M M 2 ? M 13 ? 19 1 1 A DG 3 1_555 A DC 12 4_555 0.142 -0.293 -0.148 -10.431 -5.974 -6.250 2 M_DG3:DC12_M M 3 ? M 12 ? 19 1 1 A DC 4 1_555 A DG 11 4_555 0.076 -0.002 0.211 -10.402 -4.678 3.215 3 M_DC4:DG11_M M 4 ? M 11 ? 19 1 1 A DG 5 1_555 A DC 10 4_555 -0.370 -0.400 -0.248 -8.625 -1.742 -6.019 4 M_DG5:DC10_M M 5 ? M 10 ? 19 1 1 A DA 6 1_555 A DT 9 4_555 0.239 -0.170 -0.259 0.542 -6.671 -7.680 5 M_DA6:DT9_M M 6 ? M 9 ? 20 1 1 A DA 7 1_555 A DT 8 4_555 0.158 -0.130 0.713 6.428 1.952 0.691 6 M_DA7:DT8_M M 7 ? M 8 ? 20 1 1 A DT 8 1_555 A DA 7 4_555 -0.158 -0.130 0.713 -6.428 1.952 0.691 7 M_DT8:DA7_M M 8 ? M 7 ? 20 1 1 A DT 9 1_555 A DA 6 4_555 -0.239 -0.170 -0.259 -0.542 -6.671 -7.680 8 M_DT9:DA6_M M 9 ? M 6 ? 20 1 1 A DC 10 1_555 A DG 5 4_555 0.370 -0.400 -0.248 8.625 -1.742 -6.019 9 M_DC10:DG5_M M 10 ? M 5 ? 19 1 1 A DG 11 1_555 A DC 4 4_555 -0.076 -0.002 0.211 10.402 -4.678 3.215 10 M_DG11:DC4_M M 11 ? M 4 ? 19 1 1 A DC 12 1_555 A DG 3 4_555 -0.142 -0.293 -0.148 10.431 -5.974 -6.250 11 M_DC12:DG3_M M 12 ? M 3 ? 19 1 1 A DG 13 1_555 A DC 2 4_555 -0.235 -0.316 0.277 22.127 -0.705 -3.100 12 M_DG13:DC2_M M 13 ? M 2 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 2 1_555 A DG 13 4_555 A DG 3 1_555 A DC 12 4_555 -0.091 0.234 3.222 2.493 4.133 24.978 -0.644 0.916 3.193 9.444 -5.696 25.433 1 MM_DC2DG3:DC12DG13_MM M 2 ? M 13 ? M 3 ? M 12 ? 1 A DG 3 1_555 A DC 12 4_555 A DC 4 1_555 A DG 11 4_555 -0.074 -0.346 3.439 -1.653 0.881 34.610 -0.723 -0.142 3.429 1.479 2.777 34.659 2 MM_DG3DC4:DG11DC12_MM M 3 ? M 12 ? M 4 ? M 11 ? 1 A DC 4 1_555 A DG 11 4_555 A DG 5 1_555 A DC 10 4_555 0.388 -0.038 3.425 3.977 -1.440 33.877 0.176 0.003 3.446 -2.459 -6.791 34.133 3 MM_DC4DG5:DC10DG11_MM M 4 ? M 11 ? M 5 ? M 10 ? 1 A DG 5 1_555 A DC 10 4_555 A DA 6 1_555 A DT 9 4_555 -0.987 -0.198 3.354 1.496 -0.096 34.041 -0.323 1.926 3.309 -0.163 -2.554 34.073 4 MM_DG5DA6:DT9DC10_MM M 5 ? M 10 ? M 6 ? M 9 ? 1 A DA 6 1_555 A DT 9 4_555 A DA 7 1_555 A DT 8 4_555 0.785 0.355 3.862 -8.716 33.205 20.620 -4.238 -2.399 2.149 57.948 15.210 39.886 5 MM_DA6DA7:DT8DT9_MM M 6 ? M 9 ? M 7 ? M 8 ? 1 A DA 7 1_555 A DT 8 4_555 A DT 8 1_555 A DA 7 4_555 0.000 0.534 5.145 0.000 -57.004 42.132 3.791 0.000 2.816 -56.498 0.000 69.817 6 MM_DA7DT8:DA7DT8_MM M 7 ? M 8 ? M 8 ? M 7 ? 1 A DT 8 1_555 A DA 7 4_555 A DT 9 1_555 A DA 6 4_555 -0.785 0.355 3.862 8.716 33.205 20.620 -4.238 2.399 2.149 57.948 -15.210 39.886 7 MM_DT8DT9:DA6DA7_MM M 8 ? M 7 ? M 9 ? M 6 ? 1 A DT 9 1_555 A DA 6 4_555 A DC 10 1_555 A DG 5 4_555 0.987 -0.198 3.354 -1.496 -0.096 34.041 -0.323 -1.926 3.309 -0.163 2.554 34.073 8 MM_DT9DC10:DG5DA6_MM M 9 ? M 6 ? M 10 ? M 5 ? 1 A DC 10 1_555 A DG 5 4_555 A DG 11 1_555 A DC 4 4_555 -0.388 -0.038 3.425 -3.977 -1.440 33.877 0.176 -0.003 3.446 -2.459 6.791 34.133 9 MM_DC10DG11:DC4DG5_MM M 10 ? M 5 ? M 11 ? M 4 ? 1 A DG 11 1_555 A DC 4 4_555 A DC 12 1_555 A DG 3 4_555 0.074 -0.346 3.439 1.653 0.881 34.610 -0.723 0.142 3.429 1.479 -2.777 34.659 10 MM_DG11DC12:DG3DC4_MM M 11 ? M 4 ? M 12 ? M 3 ? 1 A DC 12 1_555 A DG 3 4_555 A DG 13 1_555 A DC 2 4_555 0.091 0.234 3.222 -2.493 4.133 24.978 -0.644 -0.916 3.193 9.444 5.696 25.433 11 MM_DC12DG13:DC2DG3_MM M 12 ? M 3 ? M 13 ? M 2 ? # _atom_sites.entry_id 1QRI _atom_sites.fract_transf_matrix[1][1] 0.008446 _atom_sites.fract_transf_matrix[1][2] 0.004876 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009753 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020121 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S # loop_