data_1QRV # _entry.id 1QRV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1QRV pdb_00001qrv 10.2210/pdb1qrv/pdb NDB PD0110 ? ? RCSB RCSB009190 ? ? WWPDB D_1000009190 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-12-18 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-01-31 5 'Structure model' 1 4 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' citation_author 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_citation_author.name' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1QRV _pdbx_database_status.recvd_initial_deposition_date 1999-06-15 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2LEF 'RELATED PROTEIN LEF-1 COMPLEXED TO DNA SEQUENCE SPECIFIC NMR' unspecified PDB 1HRZ 'RELATED PROTEIN SRY COMPLEXED TO DNA SEQUENCE SPECIFIC NMR' unspecified PDB 1HMA 'RELATED PROTEIN HMG1 DOMAIN A FREE NMR' unspecified PDB 1HMF 'RELATED PROTEIN HMG1 DOMAIN B FREE NMR' unspecified PDB 1CG7 'RELATED PROTEIN NHP6A' unspecified PDB 1CKT 'RELATED PROTEIN HMG1 DOMAIN A BOUND TO CISPLATIN MODIFIED DNA' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Murphy IV, F.V.' 1 'Sweet, R.M.' 2 'Churchill, M.E.A.' 3 # _citation.id primary _citation.title ;The structure of a chromosomal high mobility group protein-DNA complex reveals sequence-neutral mechanisms important for non-sequence-specific DNA recognition. ; _citation.journal_abbrev 'EMBO J.' _citation.journal_volume 18 _citation.page_first 6610 _citation.page_last 6618 _citation.year 1999 _citation.journal_id_ASTM EMJODG _citation.country UK _citation.journal_id_ISSN 0261-4189 _citation.journal_id_CSD 0897 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10581235 _citation.pdbx_database_id_DOI 10.1093/emboj/18.23.6610 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Murphy IV, F.V.' 1 ? primary 'Sweet, R.M.' 2 ? primary 'Churchill, M.E.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3') ; 3045.005 2 ? ? ? ? 2 polymer man 'HIGH MOBILITY GROUP PROTEIN D' 8370.515 2 ? ? 'RESIDUES 2-74' ? 3 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 4 water nat water 18.015 116 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name HMG-D # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DG)(DC)(DG)(DA)(DT)(DA)(DT)(DC)(DG)(DC)' GCGATATCGC C,D ? 2 'polypeptide(L)' no no SDKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMKDKSEWEAKAAKAKDDYDRAVKEFEANG SDKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMKDKSEWEAKAAKAKDDYDRAVKEFEANG A,B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'SODIUM ION' NA 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DG n 1 4 DA n 1 5 DT n 1 6 DA n 1 7 DT n 1 8 DC n 1 9 DG n 1 10 DC n 2 1 SER n 2 2 ASP n 2 3 LYS n 2 4 PRO n 2 5 LYS n 2 6 ARG n 2 7 PRO n 2 8 LEU n 2 9 SER n 2 10 ALA n 2 11 TYR n 2 12 MET n 2 13 LEU n 2 14 TRP n 2 15 LEU n 2 16 ASN n 2 17 SER n 2 18 ALA n 2 19 ARG n 2 20 GLU n 2 21 SER n 2 22 ILE n 2 23 LYS n 2 24 ARG n 2 25 GLU n 2 26 ASN n 2 27 PRO n 2 28 GLY n 2 29 ILE n 2 30 LYS n 2 31 VAL n 2 32 THR n 2 33 GLU n 2 34 VAL n 2 35 ALA n 2 36 LYS n 2 37 ARG n 2 38 GLY n 2 39 GLY n 2 40 GLU n 2 41 LEU n 2 42 TRP n 2 43 ARG n 2 44 ALA n 2 45 MET n 2 46 LYS n 2 47 ASP n 2 48 LYS n 2 49 SER n 2 50 GLU n 2 51 TRP n 2 52 GLU n 2 53 ALA n 2 54 LYS n 2 55 ALA n 2 56 ALA n 2 57 LYS n 2 58 ALA n 2 59 LYS n 2 60 ASP n 2 61 ASP n 2 62 TYR n 2 63 ASP n 2 64 ARG n 2 65 ALA n 2 66 VAL n 2 67 LYS n 2 68 GLU n 2 69 PHE n 2 70 GLU n 2 71 ALA n 2 72 ASN n 2 73 GLY n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'fruit fly' _entity_src_gen.gene_src_genus Drosophila _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Drosophila melanogaster' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 7227 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL-21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET13A _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G C . n A 1 2 DC 2 2 2 DC C C . n A 1 3 DG 3 3 3 DG G C . n A 1 4 DA 4 4 4 DA A C . n A 1 5 DT 5 5 5 DT T C . n A 1 6 DA 6 6 6 DA A C . n A 1 7 DT 7 7 7 DT T C . n A 1 8 DC 8 8 8 DC C C . n A 1 9 DG 9 9 9 DG G C . n A 1 10 DC 10 10 10 DC C C . n B 1 1 DG 1 11 11 DG G D . n B 1 2 DC 2 12 12 DC C D . n B 1 3 DG 3 13 13 DG G D . n B 1 4 DA 4 14 14 DA A D . n B 1 5 DT 5 15 15 DT T D . n B 1 6 DA 6 16 16 DA A D . n B 1 7 DT 7 17 17 DT T D . n B 1 8 DC 8 18 18 DC C D . n B 1 9 DG 9 19 19 DG G D . n B 1 10 DC 10 20 20 DC C D . n C 2 1 SER 1 2 2 SER ALA A . n C 2 2 ASP 2 3 3 ASP ASP A . n C 2 3 LYS 3 4 4 LYS LYS A . n C 2 4 PRO 4 5 5 PRO PRO A . n C 2 5 LYS 5 6 6 LYS ALA A . n C 2 6 ARG 6 7 7 ARG ARG A . n C 2 7 PRO 7 8 8 PRO PRO A . n C 2 8 LEU 8 9 9 LEU LEU A . n C 2 9 SER 9 10 10 SER SER A . n C 2 10 ALA 10 11 11 ALA ALA A . n C 2 11 TYR 11 12 12 TYR TYR A . n C 2 12 MET 12 13 13 MET MET A . n C 2 13 LEU 13 14 14 LEU LEU A . n C 2 14 TRP 14 15 15 TRP TRP A . n C 2 15 LEU 15 16 16 LEU LEU A . n C 2 16 ASN 16 17 17 ASN ASN A . n C 2 17 SER 17 18 18 SER SER A . n C 2 18 ALA 18 19 19 ALA ALA A . n C 2 19 ARG 19 20 20 ARG ARG A . n C 2 20 GLU 20 21 21 GLU GLU A . n C 2 21 SER 21 22 22 SER SER A . n C 2 22 ILE 22 23 23 ILE ILE A . n C 2 23 LYS 23 24 24 LYS LYS A . n C 2 24 ARG 24 25 25 ARG ARG A . n C 2 25 GLU 25 26 26 GLU GLU A . n C 2 26 ASN 26 27 27 ASN ASN A . n C 2 27 PRO 27 28 28 PRO PRO A . n C 2 28 GLY 28 29 29 GLY GLY A . n C 2 29 ILE 29 30 30 ILE ILE A . n C 2 30 LYS 30 31 31 LYS LYS A . n C 2 31 VAL 31 32 32 VAL VAL A . n C 2 32 THR 32 33 33 THR THR A . n C 2 33 GLU 33 34 34 GLU GLU A . n C 2 34 VAL 34 35 35 VAL VAL A . n C 2 35 ALA 35 36 36 ALA ALA A . n C 2 36 LYS 36 37 37 LYS LYS A . n C 2 37 ARG 37 38 38 ARG ARG A . n C 2 38 GLY 38 39 39 GLY GLY A . n C 2 39 GLY 39 40 40 GLY GLY A . n C 2 40 GLU 40 41 41 GLU GLU A . n C 2 41 LEU 41 42 42 LEU LEU A . n C 2 42 TRP 42 43 43 TRP TRP A . n C 2 43 ARG 43 44 44 ARG ARG A . n C 2 44 ALA 44 45 45 ALA ALA A . n C 2 45 MET 45 46 46 MET MET A . n C 2 46 LYS 46 47 47 LYS LYS A . n C 2 47 ASP 47 48 48 ASP ASP A . n C 2 48 LYS 48 49 49 LYS LYS A . n C 2 49 SER 49 50 50 SER SER A . n C 2 50 GLU 50 51 51 GLU GLU A . n C 2 51 TRP 51 52 52 TRP TRP A . n C 2 52 GLU 52 53 53 GLU GLU A . n C 2 53 ALA 53 54 54 ALA ALA A . n C 2 54 LYS 54 55 55 LYS LYS A . n C 2 55 ALA 55 56 56 ALA ALA A . n C 2 56 ALA 56 57 57 ALA ALA A . n C 2 57 LYS 57 58 58 LYS LYS A . n C 2 58 ALA 58 59 59 ALA ALA A . n C 2 59 LYS 59 60 60 LYS LYS A . n C 2 60 ASP 60 61 61 ASP ASP A . n C 2 61 ASP 61 62 62 ASP ASP A . n C 2 62 TYR 62 63 63 TYR TYR A . n C 2 63 ASP 63 64 64 ASP ASP A . n C 2 64 ARG 64 65 65 ARG ARG A . n C 2 65 ALA 65 66 66 ALA ALA A . n C 2 66 VAL 66 67 67 VAL VAL A . n C 2 67 LYS 67 68 68 LYS LYS A . n C 2 68 GLU 68 69 69 GLU GLU A . n C 2 69 PHE 69 70 70 PHE PHE A . n C 2 70 GLU 70 71 71 GLU GLU A . n C 2 71 ALA 71 72 72 ALA ALA A . n C 2 72 ASN 72 73 73 ASN ASN A . n C 2 73 GLY 73 74 74 GLY GLY A . n D 2 1 SER 1 2 ? ? ? B . n D 2 2 ASP 2 3 3 ASP ASP B . n D 2 3 LYS 3 4 4 LYS LYS B . n D 2 4 PRO 4 5 5 PRO PRO B . n D 2 5 LYS 5 6 6 LYS LYS B . n D 2 6 ARG 6 7 7 ARG ARG B . n D 2 7 PRO 7 8 8 PRO PRO B . n D 2 8 LEU 8 9 9 LEU LEU B . n D 2 9 SER 9 10 10 SER SER B . n D 2 10 ALA 10 11 11 ALA ALA B . n D 2 11 TYR 11 12 12 TYR TYR B . n D 2 12 MET 12 13 13 MET MET B . n D 2 13 LEU 13 14 14 LEU LEU B . n D 2 14 TRP 14 15 15 TRP TRP B . n D 2 15 LEU 15 16 16 LEU LEU B . n D 2 16 ASN 16 17 17 ASN ASN B . n D 2 17 SER 17 18 18 SER SER B . n D 2 18 ALA 18 19 19 ALA ALA B . n D 2 19 ARG 19 20 20 ARG ARG B . n D 2 20 GLU 20 21 21 GLU GLU B . n D 2 21 SER 21 22 22 SER SER B . n D 2 22 ILE 22 23 23 ILE ILE B . n D 2 23 LYS 23 24 24 LYS LYS B . n D 2 24 ARG 24 25 25 ARG ARG B . n D 2 25 GLU 25 26 26 GLU GLU B . n D 2 26 ASN 26 27 27 ASN ASN B . n D 2 27 PRO 27 28 28 PRO PRO B . n D 2 28 GLY 28 29 29 GLY GLY B . n D 2 29 ILE 29 30 30 ILE ILE B . n D 2 30 LYS 30 31 31 LYS LYS B . n D 2 31 VAL 31 32 32 VAL VAL B . n D 2 32 THR 32 33 33 THR THR B . n D 2 33 GLU 33 34 34 GLU GLU B . n D 2 34 VAL 34 35 35 VAL VAL B . n D 2 35 ALA 35 36 36 ALA ALA B . n D 2 36 LYS 36 37 37 LYS LYS B . n D 2 37 ARG 37 38 38 ARG ARG B . n D 2 38 GLY 38 39 39 GLY GLY B . n D 2 39 GLY 39 40 40 GLY GLY B . n D 2 40 GLU 40 41 41 GLU GLU B . n D 2 41 LEU 41 42 42 LEU LEU B . n D 2 42 TRP 42 43 43 TRP TRP B . n D 2 43 ARG 43 44 44 ARG ARG B . n D 2 44 ALA 44 45 45 ALA ALA B . n D 2 45 MET 45 46 46 MET MET B . n D 2 46 LYS 46 47 47 LYS LYS B . n D 2 47 ASP 47 48 48 ASP ASP B . n D 2 48 LYS 48 49 49 LYS LYS B . n D 2 49 SER 49 50 50 SER SER B . n D 2 50 GLU 50 51 51 GLU GLU B . n D 2 51 TRP 51 52 52 TRP TRP B . n D 2 52 GLU 52 53 53 GLU GLU B . n D 2 53 ALA 53 54 54 ALA ALA B . n D 2 54 LYS 54 55 55 LYS LYS B . n D 2 55 ALA 55 56 56 ALA ALA B . n D 2 56 ALA 56 57 57 ALA ALA B . n D 2 57 LYS 57 58 58 LYS LYS B . n D 2 58 ALA 58 59 59 ALA ALA B . n D 2 59 LYS 59 60 60 LYS LYS B . n D 2 60 ASP 60 61 61 ASP ASP B . n D 2 61 ASP 61 62 62 ASP ASP B . n D 2 62 TYR 62 63 63 TYR TYR B . n D 2 63 ASP 63 64 64 ASP ASP B . n D 2 64 ARG 64 65 65 ARG ARG B . n D 2 65 ALA 65 66 66 ALA ALA B . n D 2 66 VAL 66 67 67 VAL VAL B . n D 2 67 LYS 67 68 68 LYS LYS B . n D 2 68 GLU 68 69 69 GLU GLU B . n D 2 69 PHE 69 70 70 PHE PHE B . n D 2 70 GLU 70 71 71 GLU GLU B . n D 2 71 ALA 71 72 72 ALA ALA B . n D 2 72 ASN 72 73 73 ASN ASN B . n D 2 73 GLY 73 74 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NA 1 501 1 NA NA C . F 4 HOH 1 502 1 HOH WAT C . F 4 HOH 2 503 16 HOH WAT C . F 4 HOH 3 504 21 HOH WAT C . F 4 HOH 4 505 27 HOH WAT C . F 4 HOH 5 506 41 HOH WAT C . F 4 HOH 6 507 46 HOH WAT C . F 4 HOH 7 508 63 HOH WAT C . F 4 HOH 8 509 70 HOH WAT C . F 4 HOH 9 510 74 HOH WAT C . F 4 HOH 10 511 75 HOH WAT C . F 4 HOH 11 512 85 HOH WAT C . F 4 HOH 12 513 91 HOH WAT C . F 4 HOH 13 514 106 HOH WAT C . F 4 HOH 14 515 107 HOH WAT C . F 4 HOH 15 516 108 HOH WAT C . F 4 HOH 16 517 109 HOH WAT C . F 4 HOH 17 518 110 HOH WAT C . F 4 HOH 18 519 113 HOH WAT C . G 4 HOH 1 21 11 HOH WAT D . G 4 HOH 2 22 24 HOH WAT D . G 4 HOH 3 23 49 HOH WAT D . G 4 HOH 4 24 56 HOH WAT D . G 4 HOH 5 25 59 HOH WAT D . G 4 HOH 6 26 69 HOH WAT D . G 4 HOH 7 27 72 HOH WAT D . G 4 HOH 8 28 76 HOH WAT D . H 4 HOH 1 75 3 HOH WAT A . H 4 HOH 2 76 4 HOH WAT A . H 4 HOH 3 77 5 HOH WAT A . H 4 HOH 4 78 6 HOH WAT A . H 4 HOH 5 79 7 HOH WAT A . H 4 HOH 6 80 8 HOH WAT A . H 4 HOH 7 81 9 HOH WAT A . H 4 HOH 8 82 10 HOH WAT A . H 4 HOH 9 83 12 HOH WAT A . H 4 HOH 10 84 13 HOH WAT A . H 4 HOH 11 85 14 HOH WAT A . H 4 HOH 12 86 15 HOH WAT A . H 4 HOH 13 87 17 HOH WAT A . H 4 HOH 14 88 18 HOH WAT A . H 4 HOH 15 89 19 HOH WAT A . H 4 HOH 16 90 20 HOH WAT A . H 4 HOH 17 91 22 HOH WAT A . H 4 HOH 18 92 25 HOH WAT A . H 4 HOH 19 93 26 HOH WAT A . H 4 HOH 20 94 28 HOH WAT A . H 4 HOH 21 95 29 HOH WAT A . H 4 HOH 22 96 30 HOH WAT A . H 4 HOH 23 97 31 HOH WAT A . H 4 HOH 24 98 32 HOH WAT A . H 4 HOH 25 99 34 HOH WAT A . H 4 HOH 26 100 35 HOH WAT A . H 4 HOH 27 101 36 HOH WAT A . H 4 HOH 28 102 40 HOH WAT A . H 4 HOH 29 103 42 HOH WAT A . H 4 HOH 30 104 43 HOH WAT A . H 4 HOH 31 105 47 HOH WAT A . H 4 HOH 32 106 48 HOH WAT A . H 4 HOH 33 107 50 HOH WAT A . H 4 HOH 34 108 53 HOH WAT A . H 4 HOH 35 109 55 HOH WAT A . H 4 HOH 36 110 57 HOH WAT A . H 4 HOH 37 111 58 HOH WAT A . H 4 HOH 38 112 60 HOH WAT A . H 4 HOH 39 113 66 HOH WAT A . H 4 HOH 40 114 68 HOH WAT A . H 4 HOH 41 115 73 HOH WAT A . H 4 HOH 42 116 80 HOH WAT A . H 4 HOH 43 117 81 HOH WAT A . H 4 HOH 44 118 82 HOH WAT A . H 4 HOH 45 119 86 HOH WAT A . H 4 HOH 46 120 87 HOH WAT A . H 4 HOH 47 121 88 HOH WAT A . H 4 HOH 48 122 89 HOH WAT A . H 4 HOH 49 123 92 HOH WAT A . H 4 HOH 50 124 93 HOH WAT A . H 4 HOH 51 125 94 HOH WAT A . H 4 HOH 52 126 95 HOH WAT A . H 4 HOH 53 127 96 HOH WAT A . H 4 HOH 54 128 102 HOH WAT A . H 4 HOH 55 129 103 HOH WAT A . H 4 HOH 56 130 104 HOH WAT A . H 4 HOH 57 131 105 HOH WAT A . H 4 HOH 58 132 111 HOH WAT A . H 4 HOH 59 133 112 HOH WAT A . H 4 HOH 60 134 114 HOH WAT A . I 4 HOH 1 75 2 HOH WAT B . I 4 HOH 2 76 23 HOH WAT B . I 4 HOH 3 77 33 HOH WAT B . I 4 HOH 4 78 37 HOH WAT B . I 4 HOH 5 79 38 HOH WAT B . I 4 HOH 6 80 39 HOH WAT B . I 4 HOH 7 81 44 HOH WAT B . I 4 HOH 8 82 45 HOH WAT B . I 4 HOH 9 83 51 HOH WAT B . I 4 HOH 10 84 52 HOH WAT B . I 4 HOH 11 85 54 HOH WAT B . I 4 HOH 12 86 61 HOH WAT B . I 4 HOH 13 87 62 HOH WAT B . I 4 HOH 14 88 64 HOH WAT B . I 4 HOH 15 89 65 HOH WAT B . I 4 HOH 16 90 67 HOH WAT B . I 4 HOH 17 91 71 HOH WAT B . I 4 HOH 18 92 77 HOH WAT B . I 4 HOH 19 93 78 HOH WAT B . I 4 HOH 20 94 79 HOH WAT B . I 4 HOH 21 95 83 HOH WAT B . I 4 HOH 22 96 84 HOH WAT B . I 4 HOH 23 97 90 HOH WAT B . I 4 HOH 24 98 97 HOH WAT B . I 4 HOH 25 99 98 HOH WAT B . I 4 HOH 26 100 99 HOH WAT B . I 4 HOH 27 101 100 HOH WAT B . I 4 HOH 28 102 101 HOH WAT B . I 4 HOH 29 103 115 HOH WAT B . I 4 HOH 30 104 116 HOH WAT B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A SER 2 ? OG ? C SER 1 OG 2 1 Y 1 A LYS 6 ? CG ? C LYS 5 CG 3 1 Y 1 A LYS 6 ? CD ? C LYS 5 CD 4 1 Y 1 A LYS 6 ? CE ? C LYS 5 CE 5 1 Y 1 A LYS 6 ? NZ ? C LYS 5 NZ # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SOLVE phasing . ? 1 SHARP phasing . ? 2 CNS refinement 0.5 ? 3 DENZO 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # _cell.entry_id 1QRV _cell.length_a 43.740 _cell.length_b 53.797 _cell.length_c 86.843 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1QRV _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1QRV _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.21 _exptl_crystal.density_percent_sol 44.40 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 296 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.85 _exptl_crystal_grow.pdbx_details 'PEG 3350, TRIZMA-CL, NACL, pH 7.85, VAPOR DIFFUSION, SITTING DROP, temperature 296K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'PEG 3350,' ? ? ? 1 2 1 TRIZMA-CL ? ? ? 1 3 1 NACL ? ? ? 1 4 2 'PEG 3350,' ? ? ? 1 5 2 TRIZMA-CL ? ? ? 1 6 2 NACL ? ? ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100.0 ? 1 2 100.0 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD 'BRANDEIS - B4' 1998-08-15 ? 2 'IMAGE PLATE' 'RIGAKU RAXIS IIC' 1996-07-02 ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M ? 'SINGLE WAVELENGTH' x-ray 2 1 M ? 'SINGLE WAVELENGTH' x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9000 1.0 2 0.9211 1.0 3 0.92157 1.0 4 1.05 1.0 5 1.5418 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'NSLS BEAMLINE X12C' NSLS X12C ? 0.9000,0.9211,0.92157,1.05 2 'ROTATING ANODE' 'RIGAKU RU300' ? ? 1.5418 1.5418 # _reflns.entry_id 1QRV _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 20. _reflns.d_resolution_high 2.2 _reflns.number_obs 10672 _reflns.number_all 10672 _reflns.percent_possible_obs 98.0 _reflns.pdbx_Rmerge_I_obs 0.0520000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 24.2 _reflns.B_iso_Wilson_estimate 24.2 _reflns.pdbx_redundancy 8.8 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1,2 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.2 _reflns_shell.d_res_low 2.28 _reflns_shell.percent_possible_all 97.9 _reflns_shell.Rmerge_I_obs 0.1980000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 4.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1QRV _refine.ls_number_reflns_obs 10672 _refine.ls_number_reflns_all 10672 _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 931772.80 _refine.pdbx_data_cutoff_low_absF 0.00 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 2.20 _refine.ls_percent_reflns_obs 97.9 _refine.ls_R_factor_obs 0.2380000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2380000 _refine.ls_R_factor_R_free 0.2880000 _refine.ls_R_factor_R_free_error 0.012 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.2 _refine.ls_number_reflns_R_free 560 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 34.2 _refine.aniso_B[1][1] 8.56 _refine.aniso_B[2][2] -4.17 _refine.aniso_B[3][3] -4.38 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.294 _refine.solvent_model_param_bsol 32.39 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'USED CROSS VALIDATED MAXIMUM LIKELIHOOD PROCEDURE INSTITUTED IN CNS 0.5.' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'PROTEIN: ENGH & HUBER, DNA: PARKINSON ET AL.' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_overall_phase_error ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1QRV _refine_analyze.Luzzati_coordinate_error_obs 0.30 _refine_analyze.Luzzati_sigma_a_obs 0.20 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.39 _refine_analyze.Luzzati_sigma_a_free 0.29 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1160 _refine_hist.pdbx_number_atoms_nucleic_acid 423 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 116 _refine_hist.number_atoms_total 1700 _refine_hist.d_res_high 2.20 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 18.9 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.11 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 2.18 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 3.32 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 3.34 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 4.64 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.20 _refine_ls_shell.d_res_low 2.34 _refine_ls_shell.number_reflns_R_work 1648 _refine_ls_shell.R_factor_R_work 0.2660000 _refine_ls_shell.percent_reflns_obs 97.6 _refine_ls_shell.R_factor_R_free 0.3320000 _refine_ls_shell.R_factor_R_free_error 0.036 _refine_ls_shell.percent_reflns_R_free 5.0 _refine_ls_shell.number_reflns_R_free 87 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PA PROTEIN.TOP 'X-RAY DIFFRACTION' 2 DNA-RNA_REP.PA DNA-RNA.TOP 'X-RAY DIFFRACTION' 3 WATER.PARAM WATER.TOP 'X-RAY DIFFRACTION' 4 ION.PARAM ION.TOP 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 1QRV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1QRV _struct.title 'CRYSTAL STRUCTURE OF THE COMPLEX OF HMG-D AND DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1QRV _struct_keywords.pdbx_keywords 'GENE REGULATION/DNA' _struct_keywords.text 'PROTEIN-DNA COMPLEX, HMG DOMAIN, NON-SEQUENCE SPECIFIC CHROMOSOMAL PROTEIN HMG-D, GENE REGULATION-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 UNP HMGD_DROME 2 Q05783 ? ? ? 2 PDB 1QRV 1 1QRV ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1QRV A 1 ? 73 ? Q05783 2 ? 74 ? 2 74 2 1 1QRV B 1 ? 73 ? Q05783 2 ? 74 ? 2 74 3 2 1QRV C 1 ? 10 ? 1QRV 1 ? 10 ? 1 10 4 2 1QRV D 1 ? 10 ? 1QRV 11 ? 20 ? 11 20 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER C 9 ? GLU C 25 ? SER A 10 GLU A 26 1 ? 17 HELX_P HELX_P2 2 LYS C 30 ? MET C 45 ? LYS A 31 MET A 46 1 ? 16 HELX_P HELX_P3 3 LYS C 48 ? GLU C 70 ? LYS A 49 GLU A 71 1 ? 23 HELX_P HELX_P4 4 SER D 9 ? ASN D 26 ? SER B 10 ASN B 27 1 ? 18 HELX_P HELX_P5 5 LYS D 30 ? MET D 45 ? LYS B 31 MET B 46 1 ? 16 HELX_P HELX_P6 6 LYS D 48 ? ALA D 71 ? LYS B 49 ALA B 72 1 ? 24 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DA 6 OP1 ? ? ? 1_555 E NA . NA ? ? C DA 6 C NA 501 1_555 ? ? ? ? ? ? ? 2.784 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 10 N3 ? ? C DG 1 D DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 10 O2 ? ? C DG 1 D DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 10 N4 ? ? C DG 1 D DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 9 N1 ? ? C DC 2 D DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 9 O6 ? ? C DC 2 D DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 9 N2 ? ? C DC 2 D DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 8 N3 ? ? C DG 3 D DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 8 O2 ? ? C DG 3 D DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 8 N4 ? ? C DG 3 D DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 7 N3 ? ? C DA 4 D DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 7 O4 ? ? C DA 4 D DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 6 N1 ? ? C DT 5 D DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 6 N6 ? ? C DT 5 D DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 5 N3 ? ? C DA 6 D DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 5 O4 ? ? C DA 6 D DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 4 N1 ? ? C DT 7 D DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 4 N6 ? ? C DT 7 D DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 3 N1 ? ? C DC 8 D DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 3 O6 ? ? C DC 8 D DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 3 N2 ? ? C DC 8 D DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 2 N3 ? ? C DG 9 D DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 2 O2 ? ? C DG 9 D DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 2 N4 ? ? C DG 9 D DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id C _struct_site.pdbx_auth_comp_id NA _struct_site.pdbx_auth_seq_id 501 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 1 _struct_site.details 'BINDING SITE FOR RESIDUE NA C 501' # _struct_site_gen.id 1 _struct_site_gen.site_id AC1 _struct_site_gen.pdbx_num_res 1 _struct_site_gen.label_comp_id DA _struct_site_gen.label_asym_id A _struct_site_gen.label_seq_id 6 _struct_site_gen.pdbx_auth_ins_code ? _struct_site_gen.auth_comp_id DA _struct_site_gen.auth_asym_id C _struct_site_gen.auth_seq_id 6 _struct_site_gen.label_atom_id . _struct_site_gen.label_alt_id ? _struct_site_gen.symmetry 1_555 _struct_site_gen.details ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B SER 2 ? D SER 1 2 1 Y 1 B GLY 74 ? D GLY 73 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DA OP3 O N N 74 DA P P N N 75 DA OP1 O N N 76 DA OP2 O N N 77 DA "O5'" O N N 78 DA "C5'" C N N 79 DA "C4'" C N R 80 DA "O4'" O N N 81 DA "C3'" C N S 82 DA "O3'" O N N 83 DA "C2'" C N N 84 DA "C1'" C N R 85 DA N9 N Y N 86 DA C8 C Y N 87 DA N7 N Y N 88 DA C5 C Y N 89 DA C6 C Y N 90 DA N6 N N N 91 DA N1 N Y N 92 DA C2 C Y N 93 DA N3 N Y N 94 DA C4 C Y N 95 DA HOP3 H N N 96 DA HOP2 H N N 97 DA "H5'" H N N 98 DA "H5''" H N N 99 DA "H4'" H N N 100 DA "H3'" H N N 101 DA "HO3'" H N N 102 DA "H2'" H N N 103 DA "H2''" H N N 104 DA "H1'" H N N 105 DA H8 H N N 106 DA H61 H N N 107 DA H62 H N N 108 DA H2 H N N 109 DC OP3 O N N 110 DC P P N N 111 DC OP1 O N N 112 DC OP2 O N N 113 DC "O5'" O N N 114 DC "C5'" C N N 115 DC "C4'" C N R 116 DC "O4'" O N N 117 DC "C3'" C N S 118 DC "O3'" O N N 119 DC "C2'" C N N 120 DC "C1'" C N R 121 DC N1 N N N 122 DC C2 C N N 123 DC O2 O N N 124 DC N3 N N N 125 DC C4 C N N 126 DC N4 N N N 127 DC C5 C N N 128 DC C6 C N N 129 DC HOP3 H N N 130 DC HOP2 H N N 131 DC "H5'" H N N 132 DC "H5''" H N N 133 DC "H4'" H N N 134 DC "H3'" H N N 135 DC "HO3'" H N N 136 DC "H2'" H N N 137 DC "H2''" H N N 138 DC "H1'" H N N 139 DC H41 H N N 140 DC H42 H N N 141 DC H5 H N N 142 DC H6 H N N 143 DG OP3 O N N 144 DG P P N N 145 DG OP1 O N N 146 DG OP2 O N N 147 DG "O5'" O N N 148 DG "C5'" C N N 149 DG "C4'" C N R 150 DG "O4'" O N N 151 DG "C3'" C N S 152 DG "O3'" O N N 153 DG "C2'" C N N 154 DG "C1'" C N R 155 DG N9 N Y N 156 DG C8 C Y N 157 DG N7 N Y N 158 DG C5 C Y N 159 DG C6 C N N 160 DG O6 O N N 161 DG N1 N N N 162 DG C2 C N N 163 DG N2 N N N 164 DG N3 N N N 165 DG C4 C Y N 166 DG HOP3 H N N 167 DG HOP2 H N N 168 DG "H5'" H N N 169 DG "H5''" H N N 170 DG "H4'" H N N 171 DG "H3'" H N N 172 DG "HO3'" H N N 173 DG "H2'" H N N 174 DG "H2''" H N N 175 DG "H1'" H N N 176 DG H8 H N N 177 DG H1 H N N 178 DG H21 H N N 179 DG H22 H N N 180 DT OP3 O N N 181 DT P P N N 182 DT OP1 O N N 183 DT OP2 O N N 184 DT "O5'" O N N 185 DT "C5'" C N N 186 DT "C4'" C N R 187 DT "O4'" O N N 188 DT "C3'" C N S 189 DT "O3'" O N N 190 DT "C2'" C N N 191 DT "C1'" C N R 192 DT N1 N N N 193 DT C2 C N N 194 DT O2 O N N 195 DT N3 N N N 196 DT C4 C N N 197 DT O4 O N N 198 DT C5 C N N 199 DT C7 C N N 200 DT C6 C N N 201 DT HOP3 H N N 202 DT HOP2 H N N 203 DT "H5'" H N N 204 DT "H5''" H N N 205 DT "H4'" H N N 206 DT "H3'" H N N 207 DT "HO3'" H N N 208 DT "H2'" H N N 209 DT "H2''" H N N 210 DT "H1'" H N N 211 DT H3 H N N 212 DT H71 H N N 213 DT H72 H N N 214 DT H73 H N N 215 DT H6 H N N 216 GLU N N N N 217 GLU CA C N S 218 GLU C C N N 219 GLU O O N N 220 GLU CB C N N 221 GLU CG C N N 222 GLU CD C N N 223 GLU OE1 O N N 224 GLU OE2 O N N 225 GLU OXT O N N 226 GLU H H N N 227 GLU H2 H N N 228 GLU HA H N N 229 GLU HB2 H N N 230 GLU HB3 H N N 231 GLU HG2 H N N 232 GLU HG3 H N N 233 GLU HE2 H N N 234 GLU HXT H N N 235 GLY N N N N 236 GLY CA C N N 237 GLY C C N N 238 GLY O O N N 239 GLY OXT O N N 240 GLY H H N N 241 GLY H2 H N N 242 GLY HA2 H N N 243 GLY HA3 H N N 244 GLY HXT H N N 245 HOH O O N N 246 HOH H1 H N N 247 HOH H2 H N N 248 ILE N N N N 249 ILE CA C N S 250 ILE C C N N 251 ILE O O N N 252 ILE CB C N S 253 ILE CG1 C N N 254 ILE CG2 C N N 255 ILE CD1 C N N 256 ILE OXT O N N 257 ILE H H N N 258 ILE H2 H N N 259 ILE HA H N N 260 ILE HB H N N 261 ILE HG12 H N N 262 ILE HG13 H N N 263 ILE HG21 H N N 264 ILE HG22 H N N 265 ILE HG23 H N N 266 ILE HD11 H N N 267 ILE HD12 H N N 268 ILE HD13 H N N 269 ILE HXT H N N 270 LEU N N N N 271 LEU CA C N S 272 LEU C C N N 273 LEU O O N N 274 LEU CB C N N 275 LEU CG C N N 276 LEU CD1 C N N 277 LEU CD2 C N N 278 LEU OXT O N N 279 LEU H H N N 280 LEU H2 H N N 281 LEU HA H N N 282 LEU HB2 H N N 283 LEU HB3 H N N 284 LEU HG H N N 285 LEU HD11 H N N 286 LEU HD12 H N N 287 LEU HD13 H N N 288 LEU HD21 H N N 289 LEU HD22 H N N 290 LEU HD23 H N N 291 LEU HXT H N N 292 LYS N N N N 293 LYS CA C N S 294 LYS C C N N 295 LYS O O N N 296 LYS CB C N N 297 LYS CG C N N 298 LYS CD C N N 299 LYS CE C N N 300 LYS NZ N N N 301 LYS OXT O N N 302 LYS H H N N 303 LYS H2 H N N 304 LYS HA H N N 305 LYS HB2 H N N 306 LYS HB3 H N N 307 LYS HG2 H N N 308 LYS HG3 H N N 309 LYS HD2 H N N 310 LYS HD3 H N N 311 LYS HE2 H N N 312 LYS HE3 H N N 313 LYS HZ1 H N N 314 LYS HZ2 H N N 315 LYS HZ3 H N N 316 LYS HXT H N N 317 MET N N N N 318 MET CA C N S 319 MET C C N N 320 MET O O N N 321 MET CB C N N 322 MET CG C N N 323 MET SD S N N 324 MET CE C N N 325 MET OXT O N N 326 MET H H N N 327 MET H2 H N N 328 MET HA H N N 329 MET HB2 H N N 330 MET HB3 H N N 331 MET HG2 H N N 332 MET HG3 H N N 333 MET HE1 H N N 334 MET HE2 H N N 335 MET HE3 H N N 336 MET HXT H N N 337 NA NA NA N N 338 PHE N N N N 339 PHE CA C N S 340 PHE C C N N 341 PHE O O N N 342 PHE CB C N N 343 PHE CG C Y N 344 PHE CD1 C Y N 345 PHE CD2 C Y N 346 PHE CE1 C Y N 347 PHE CE2 C Y N 348 PHE CZ C Y N 349 PHE OXT O N N 350 PHE H H N N 351 PHE H2 H N N 352 PHE HA H N N 353 PHE HB2 H N N 354 PHE HB3 H N N 355 PHE HD1 H N N 356 PHE HD2 H N N 357 PHE HE1 H N N 358 PHE HE2 H N N 359 PHE HZ H N N 360 PHE HXT H N N 361 PRO N N N N 362 PRO CA C N S 363 PRO C C N N 364 PRO O O N N 365 PRO CB C N N 366 PRO CG C N N 367 PRO CD C N N 368 PRO OXT O N N 369 PRO H H N N 370 PRO HA H N N 371 PRO HB2 H N N 372 PRO HB3 H N N 373 PRO HG2 H N N 374 PRO HG3 H N N 375 PRO HD2 H N N 376 PRO HD3 H N N 377 PRO HXT H N N 378 SER N N N N 379 SER CA C N S 380 SER C C N N 381 SER O O N N 382 SER CB C N N 383 SER OG O N N 384 SER OXT O N N 385 SER H H N N 386 SER H2 H N N 387 SER HA H N N 388 SER HB2 H N N 389 SER HB3 H N N 390 SER HG H N N 391 SER HXT H N N 392 THR N N N N 393 THR CA C N S 394 THR C C N N 395 THR O O N N 396 THR CB C N R 397 THR OG1 O N N 398 THR CG2 C N N 399 THR OXT O N N 400 THR H H N N 401 THR H2 H N N 402 THR HA H N N 403 THR HB H N N 404 THR HG1 H N N 405 THR HG21 H N N 406 THR HG22 H N N 407 THR HG23 H N N 408 THR HXT H N N 409 TRP N N N N 410 TRP CA C N S 411 TRP C C N N 412 TRP O O N N 413 TRP CB C N N 414 TRP CG C Y N 415 TRP CD1 C Y N 416 TRP CD2 C Y N 417 TRP NE1 N Y N 418 TRP CE2 C Y N 419 TRP CE3 C Y N 420 TRP CZ2 C Y N 421 TRP CZ3 C Y N 422 TRP CH2 C Y N 423 TRP OXT O N N 424 TRP H H N N 425 TRP H2 H N N 426 TRP HA H N N 427 TRP HB2 H N N 428 TRP HB3 H N N 429 TRP HD1 H N N 430 TRP HE1 H N N 431 TRP HE3 H N N 432 TRP HZ2 H N N 433 TRP HZ3 H N N 434 TRP HH2 H N N 435 TRP HXT H N N 436 TYR N N N N 437 TYR CA C N S 438 TYR C C N N 439 TYR O O N N 440 TYR CB C N N 441 TYR CG C Y N 442 TYR CD1 C Y N 443 TYR CD2 C Y N 444 TYR CE1 C Y N 445 TYR CE2 C Y N 446 TYR CZ C Y N 447 TYR OH O N N 448 TYR OXT O N N 449 TYR H H N N 450 TYR H2 H N N 451 TYR HA H N N 452 TYR HB2 H N N 453 TYR HB3 H N N 454 TYR HD1 H N N 455 TYR HD2 H N N 456 TYR HE1 H N N 457 TYR HE2 H N N 458 TYR HH H N N 459 TYR HXT H N N 460 VAL N N N N 461 VAL CA C N S 462 VAL C C N N 463 VAL O O N N 464 VAL CB C N N 465 VAL CG1 C N N 466 VAL CG2 C N N 467 VAL OXT O N N 468 VAL H H N N 469 VAL H2 H N N 470 VAL HA H N N 471 VAL HB H N N 472 VAL HG11 H N N 473 VAL HG12 H N N 474 VAL HG13 H N N 475 VAL HG21 H N N 476 VAL HG22 H N N 477 VAL HG23 H N N 478 VAL HXT H N N 479 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DA OP3 P sing N N 70 DA OP3 HOP3 sing N N 71 DA P OP1 doub N N 72 DA P OP2 sing N N 73 DA P "O5'" sing N N 74 DA OP2 HOP2 sing N N 75 DA "O5'" "C5'" sing N N 76 DA "C5'" "C4'" sing N N 77 DA "C5'" "H5'" sing N N 78 DA "C5'" "H5''" sing N N 79 DA "C4'" "O4'" sing N N 80 DA "C4'" "C3'" sing N N 81 DA "C4'" "H4'" sing N N 82 DA "O4'" "C1'" sing N N 83 DA "C3'" "O3'" sing N N 84 DA "C3'" "C2'" sing N N 85 DA "C3'" "H3'" sing N N 86 DA "O3'" "HO3'" sing N N 87 DA "C2'" "C1'" sing N N 88 DA "C2'" "H2'" sing N N 89 DA "C2'" "H2''" sing N N 90 DA "C1'" N9 sing N N 91 DA "C1'" "H1'" sing N N 92 DA N9 C8 sing Y N 93 DA N9 C4 sing Y N 94 DA C8 N7 doub Y N 95 DA C8 H8 sing N N 96 DA N7 C5 sing Y N 97 DA C5 C6 sing Y N 98 DA C5 C4 doub Y N 99 DA C6 N6 sing N N 100 DA C6 N1 doub Y N 101 DA N6 H61 sing N N 102 DA N6 H62 sing N N 103 DA N1 C2 sing Y N 104 DA C2 N3 doub Y N 105 DA C2 H2 sing N N 106 DA N3 C4 sing Y N 107 DC OP3 P sing N N 108 DC OP3 HOP3 sing N N 109 DC P OP1 doub N N 110 DC P OP2 sing N N 111 DC P "O5'" sing N N 112 DC OP2 HOP2 sing N N 113 DC "O5'" "C5'" sing N N 114 DC "C5'" "C4'" sing N N 115 DC "C5'" "H5'" sing N N 116 DC "C5'" "H5''" sing N N 117 DC "C4'" "O4'" sing N N 118 DC "C4'" "C3'" sing N N 119 DC "C4'" "H4'" sing N N 120 DC "O4'" "C1'" sing N N 121 DC "C3'" "O3'" sing N N 122 DC "C3'" "C2'" sing N N 123 DC "C3'" "H3'" sing N N 124 DC "O3'" "HO3'" sing N N 125 DC "C2'" "C1'" sing N N 126 DC "C2'" "H2'" sing N N 127 DC "C2'" "H2''" sing N N 128 DC "C1'" N1 sing N N 129 DC "C1'" "H1'" sing N N 130 DC N1 C2 sing N N 131 DC N1 C6 sing N N 132 DC C2 O2 doub N N 133 DC C2 N3 sing N N 134 DC N3 C4 doub N N 135 DC C4 N4 sing N N 136 DC C4 C5 sing N N 137 DC N4 H41 sing N N 138 DC N4 H42 sing N N 139 DC C5 C6 doub N N 140 DC C5 H5 sing N N 141 DC C6 H6 sing N N 142 DG OP3 P sing N N 143 DG OP3 HOP3 sing N N 144 DG P OP1 doub N N 145 DG P OP2 sing N N 146 DG P "O5'" sing N N 147 DG OP2 HOP2 sing N N 148 DG "O5'" "C5'" sing N N 149 DG "C5'" "C4'" sing N N 150 DG "C5'" "H5'" sing N N 151 DG "C5'" "H5''" sing N N 152 DG "C4'" "O4'" sing N N 153 DG "C4'" "C3'" sing N N 154 DG "C4'" "H4'" sing N N 155 DG "O4'" "C1'" sing N N 156 DG "C3'" "O3'" sing N N 157 DG "C3'" "C2'" sing N N 158 DG "C3'" "H3'" sing N N 159 DG "O3'" "HO3'" sing N N 160 DG "C2'" "C1'" sing N N 161 DG "C2'" "H2'" sing N N 162 DG "C2'" "H2''" sing N N 163 DG "C1'" N9 sing N N 164 DG "C1'" "H1'" sing N N 165 DG N9 C8 sing Y N 166 DG N9 C4 sing Y N 167 DG C8 N7 doub Y N 168 DG C8 H8 sing N N 169 DG N7 C5 sing Y N 170 DG C5 C6 sing N N 171 DG C5 C4 doub Y N 172 DG C6 O6 doub N N 173 DG C6 N1 sing N N 174 DG N1 C2 sing N N 175 DG N1 H1 sing N N 176 DG C2 N2 sing N N 177 DG C2 N3 doub N N 178 DG N2 H21 sing N N 179 DG N2 H22 sing N N 180 DG N3 C4 sing N N 181 DT OP3 P sing N N 182 DT OP3 HOP3 sing N N 183 DT P OP1 doub N N 184 DT P OP2 sing N N 185 DT P "O5'" sing N N 186 DT OP2 HOP2 sing N N 187 DT "O5'" "C5'" sing N N 188 DT "C5'" "C4'" sing N N 189 DT "C5'" "H5'" sing N N 190 DT "C5'" "H5''" sing N N 191 DT "C4'" "O4'" sing N N 192 DT "C4'" "C3'" sing N N 193 DT "C4'" "H4'" sing N N 194 DT "O4'" "C1'" sing N N 195 DT "C3'" "O3'" sing N N 196 DT "C3'" "C2'" sing N N 197 DT "C3'" "H3'" sing N N 198 DT "O3'" "HO3'" sing N N 199 DT "C2'" "C1'" sing N N 200 DT "C2'" "H2'" sing N N 201 DT "C2'" "H2''" sing N N 202 DT "C1'" N1 sing N N 203 DT "C1'" "H1'" sing N N 204 DT N1 C2 sing N N 205 DT N1 C6 sing N N 206 DT C2 O2 doub N N 207 DT C2 N3 sing N N 208 DT N3 C4 sing N N 209 DT N3 H3 sing N N 210 DT C4 O4 doub N N 211 DT C4 C5 sing N N 212 DT C5 C7 sing N N 213 DT C5 C6 doub N N 214 DT C7 H71 sing N N 215 DT C7 H72 sing N N 216 DT C7 H73 sing N N 217 DT C6 H6 sing N N 218 GLU N CA sing N N 219 GLU N H sing N N 220 GLU N H2 sing N N 221 GLU CA C sing N N 222 GLU CA CB sing N N 223 GLU CA HA sing N N 224 GLU C O doub N N 225 GLU C OXT sing N N 226 GLU CB CG sing N N 227 GLU CB HB2 sing N N 228 GLU CB HB3 sing N N 229 GLU CG CD sing N N 230 GLU CG HG2 sing N N 231 GLU CG HG3 sing N N 232 GLU CD OE1 doub N N 233 GLU CD OE2 sing N N 234 GLU OE2 HE2 sing N N 235 GLU OXT HXT sing N N 236 GLY N CA sing N N 237 GLY N H sing N N 238 GLY N H2 sing N N 239 GLY CA C sing N N 240 GLY CA HA2 sing N N 241 GLY CA HA3 sing N N 242 GLY C O doub N N 243 GLY C OXT sing N N 244 GLY OXT HXT sing N N 245 HOH O H1 sing N N 246 HOH O H2 sing N N 247 ILE N CA sing N N 248 ILE N H sing N N 249 ILE N H2 sing N N 250 ILE CA C sing N N 251 ILE CA CB sing N N 252 ILE CA HA sing N N 253 ILE C O doub N N 254 ILE C OXT sing N N 255 ILE CB CG1 sing N N 256 ILE CB CG2 sing N N 257 ILE CB HB sing N N 258 ILE CG1 CD1 sing N N 259 ILE CG1 HG12 sing N N 260 ILE CG1 HG13 sing N N 261 ILE CG2 HG21 sing N N 262 ILE CG2 HG22 sing N N 263 ILE CG2 HG23 sing N N 264 ILE CD1 HD11 sing N N 265 ILE CD1 HD12 sing N N 266 ILE CD1 HD13 sing N N 267 ILE OXT HXT sing N N 268 LEU N CA sing N N 269 LEU N H sing N N 270 LEU N H2 sing N N 271 LEU CA C sing N N 272 LEU CA CB sing N N 273 LEU CA HA sing N N 274 LEU C O doub N N 275 LEU C OXT sing N N 276 LEU CB CG sing N N 277 LEU CB HB2 sing N N 278 LEU CB HB3 sing N N 279 LEU CG CD1 sing N N 280 LEU CG CD2 sing N N 281 LEU CG HG sing N N 282 LEU CD1 HD11 sing N N 283 LEU CD1 HD12 sing N N 284 LEU CD1 HD13 sing N N 285 LEU CD2 HD21 sing N N 286 LEU CD2 HD22 sing N N 287 LEU CD2 HD23 sing N N 288 LEU OXT HXT sing N N 289 LYS N CA sing N N 290 LYS N H sing N N 291 LYS N H2 sing N N 292 LYS CA C sing N N 293 LYS CA CB sing N N 294 LYS CA HA sing N N 295 LYS C O doub N N 296 LYS C OXT sing N N 297 LYS CB CG sing N N 298 LYS CB HB2 sing N N 299 LYS CB HB3 sing N N 300 LYS CG CD sing N N 301 LYS CG HG2 sing N N 302 LYS CG HG3 sing N N 303 LYS CD CE sing N N 304 LYS CD HD2 sing N N 305 LYS CD HD3 sing N N 306 LYS CE NZ sing N N 307 LYS CE HE2 sing N N 308 LYS CE HE3 sing N N 309 LYS NZ HZ1 sing N N 310 LYS NZ HZ2 sing N N 311 LYS NZ HZ3 sing N N 312 LYS OXT HXT sing N N 313 MET N CA sing N N 314 MET N H sing N N 315 MET N H2 sing N N 316 MET CA C sing N N 317 MET CA CB sing N N 318 MET CA HA sing N N 319 MET C O doub N N 320 MET C OXT sing N N 321 MET CB CG sing N N 322 MET CB HB2 sing N N 323 MET CB HB3 sing N N 324 MET CG SD sing N N 325 MET CG HG2 sing N N 326 MET CG HG3 sing N N 327 MET SD CE sing N N 328 MET CE HE1 sing N N 329 MET CE HE2 sing N N 330 MET CE HE3 sing N N 331 MET OXT HXT sing N N 332 PHE N CA sing N N 333 PHE N H sing N N 334 PHE N H2 sing N N 335 PHE CA C sing N N 336 PHE CA CB sing N N 337 PHE CA HA sing N N 338 PHE C O doub N N 339 PHE C OXT sing N N 340 PHE CB CG sing N N 341 PHE CB HB2 sing N N 342 PHE CB HB3 sing N N 343 PHE CG CD1 doub Y N 344 PHE CG CD2 sing Y N 345 PHE CD1 CE1 sing Y N 346 PHE CD1 HD1 sing N N 347 PHE CD2 CE2 doub Y N 348 PHE CD2 HD2 sing N N 349 PHE CE1 CZ doub Y N 350 PHE CE1 HE1 sing N N 351 PHE CE2 CZ sing Y N 352 PHE CE2 HE2 sing N N 353 PHE CZ HZ sing N N 354 PHE OXT HXT sing N N 355 PRO N CA sing N N 356 PRO N CD sing N N 357 PRO N H sing N N 358 PRO CA C sing N N 359 PRO CA CB sing N N 360 PRO CA HA sing N N 361 PRO C O doub N N 362 PRO C OXT sing N N 363 PRO CB CG sing N N 364 PRO CB HB2 sing N N 365 PRO CB HB3 sing N N 366 PRO CG CD sing N N 367 PRO CG HG2 sing N N 368 PRO CG HG3 sing N N 369 PRO CD HD2 sing N N 370 PRO CD HD3 sing N N 371 PRO OXT HXT sing N N 372 SER N CA sing N N 373 SER N H sing N N 374 SER N H2 sing N N 375 SER CA C sing N N 376 SER CA CB sing N N 377 SER CA HA sing N N 378 SER C O doub N N 379 SER C OXT sing N N 380 SER CB OG sing N N 381 SER CB HB2 sing N N 382 SER CB HB3 sing N N 383 SER OG HG sing N N 384 SER OXT HXT sing N N 385 THR N CA sing N N 386 THR N H sing N N 387 THR N H2 sing N N 388 THR CA C sing N N 389 THR CA CB sing N N 390 THR CA HA sing N N 391 THR C O doub N N 392 THR C OXT sing N N 393 THR CB OG1 sing N N 394 THR CB CG2 sing N N 395 THR CB HB sing N N 396 THR OG1 HG1 sing N N 397 THR CG2 HG21 sing N N 398 THR CG2 HG22 sing N N 399 THR CG2 HG23 sing N N 400 THR OXT HXT sing N N 401 TRP N CA sing N N 402 TRP N H sing N N 403 TRP N H2 sing N N 404 TRP CA C sing N N 405 TRP CA CB sing N N 406 TRP CA HA sing N N 407 TRP C O doub N N 408 TRP C OXT sing N N 409 TRP CB CG sing N N 410 TRP CB HB2 sing N N 411 TRP CB HB3 sing N N 412 TRP CG CD1 doub Y N 413 TRP CG CD2 sing Y N 414 TRP CD1 NE1 sing Y N 415 TRP CD1 HD1 sing N N 416 TRP CD2 CE2 doub Y N 417 TRP CD2 CE3 sing Y N 418 TRP NE1 CE2 sing Y N 419 TRP NE1 HE1 sing N N 420 TRP CE2 CZ2 sing Y N 421 TRP CE3 CZ3 doub Y N 422 TRP CE3 HE3 sing N N 423 TRP CZ2 CH2 doub Y N 424 TRP CZ2 HZ2 sing N N 425 TRP CZ3 CH2 sing Y N 426 TRP CZ3 HZ3 sing N N 427 TRP CH2 HH2 sing N N 428 TRP OXT HXT sing N N 429 TYR N CA sing N N 430 TYR N H sing N N 431 TYR N H2 sing N N 432 TYR CA C sing N N 433 TYR CA CB sing N N 434 TYR CA HA sing N N 435 TYR C O doub N N 436 TYR C OXT sing N N 437 TYR CB CG sing N N 438 TYR CB HB2 sing N N 439 TYR CB HB3 sing N N 440 TYR CG CD1 doub Y N 441 TYR CG CD2 sing Y N 442 TYR CD1 CE1 sing Y N 443 TYR CD1 HD1 sing N N 444 TYR CD2 CE2 doub Y N 445 TYR CD2 HD2 sing N N 446 TYR CE1 CZ doub Y N 447 TYR CE1 HE1 sing N N 448 TYR CE2 CZ sing Y N 449 TYR CE2 HE2 sing N N 450 TYR CZ OH sing N N 451 TYR OH HH sing N N 452 TYR OXT HXT sing N N 453 VAL N CA sing N N 454 VAL N H sing N N 455 VAL N H2 sing N N 456 VAL CA C sing N N 457 VAL CA CB sing N N 458 VAL CA HA sing N N 459 VAL C O doub N N 460 VAL C OXT sing N N 461 VAL CB CG1 sing N N 462 VAL CB CG2 sing N N 463 VAL CB HB sing N N 464 VAL CG1 HG11 sing N N 465 VAL CG1 HG12 sing N N 466 VAL CG1 HG13 sing N N 467 VAL CG2 HG21 sing N N 468 VAL CG2 HG22 sing N N 469 VAL CG2 HG23 sing N N 470 VAL OXT HXT sing N N 471 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1QRV 'double helix' 1QRV 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 10 1_555 -0.153 -0.314 -0.426 -5.521 -5.823 -6.950 1 C_DG1:DC20_D C 1 ? D 20 ? 19 1 1 A DC 2 1_555 B DG 9 1_555 -0.130 -0.164 -0.172 2.638 -1.042 -2.720 2 C_DC2:DG19_D C 2 ? D 19 ? 19 1 1 A DG 3 1_555 B DC 8 1_555 -0.173 -0.238 -0.178 3.547 -0.003 -3.369 3 C_DG3:DC18_D C 3 ? D 18 ? 19 1 1 A DA 4 1_555 B DT 7 1_555 0.029 -0.089 -0.177 8.357 1.027 8.766 4 C_DA4:DT17_D C 4 ? D 17 ? 20 1 1 A DT 5 1_555 B DA 6 1_555 -0.092 -0.287 0.155 18.030 20.760 -1.491 5 C_DT5:DA16_D C 5 ? D 16 ? 20 1 1 A DA 6 1_555 B DT 5 1_555 0.081 -0.173 -0.097 -17.210 -0.332 3.082 6 C_DA6:DT15_D C 6 ? D 15 ? 20 1 1 A DT 7 1_555 B DA 4 1_555 -0.028 -0.085 0.350 -3.767 -2.000 3.319 7 C_DT7:DA14_D C 7 ? D 14 ? 20 1 1 A DC 8 1_555 B DG 3 1_555 0.315 -0.121 -0.492 6.092 -15.003 -3.262 8 C_DC8:DG13_D C 8 ? D 13 ? 19 1 1 A DG 9 1_555 B DC 2 1_555 0.363 -0.291 -0.194 11.917 1.105 -3.609 9 C_DG9:DC12_D C 9 ? D 12 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 10 1_555 A DC 2 1_555 B DG 9 1_555 0.081 -1.254 3.188 -1.476 5.232 28.832 -3.537 -0.459 2.912 10.391 2.931 29.329 1 CC_DG1DC2:DG19DC20_DD C 1 ? D 20 ? C 2 ? D 19 ? 1 A DC 2 1_555 B DG 9 1_555 A DG 3 1_555 B DC 8 1_555 0.695 0.816 3.389 2.917 6.664 34.530 0.291 -0.685 3.526 11.074 -4.847 35.265 2 CC_DC2DG3:DC18DG19_DD C 2 ? D 19 ? C 3 ? D 18 ? 1 A DG 3 1_555 B DC 8 1_555 A DA 4 1_555 B DT 7 1_555 0.664 0.845 3.717 -0.401 28.986 14.071 -5.335 -1.294 2.393 64.643 0.895 32.157 3 CC_DG3DA4:DT17DC18_DD C 3 ? D 18 ? C 4 ? D 17 ? 1 A DA 4 1_555 B DT 7 1_555 A DT 5 1_555 B DA 6 1_555 -0.422 -0.152 3.462 -1.442 22.061 14.626 -6.486 0.520 1.823 56.791 3.711 26.458 4 CC_DA4DT5:DA16DT17_DD C 4 ? D 17 ? C 5 ? D 16 ? 1 A DT 5 1_555 B DA 6 1_555 A DA 6 1_555 B DT 5 1_555 0.563 -0.519 4.693 5.332 51.601 20.950 -4.862 -0.157 1.405 69.137 -7.143 55.674 5 CC_DT5DA6:DT15DA16_DD C 5 ? D 16 ? C 6 ? D 15 ? 1 A DA 6 1_555 B DT 5 1_555 A DT 7 1_555 B DA 4 1_555 -0.803 -0.508 3.112 -0.269 8.656 28.512 -2.675 1.511 2.846 17.083 0.531 29.772 6 CC_DA6DT7:DA14DT15_DD C 6 ? D 15 ? C 7 ? D 14 ? 1 A DT 7 1_555 B DA 4 1_555 A DC 8 1_555 B DG 3 1_555 -0.436 -0.077 2.866 7.325 5.726 36.258 -0.770 1.512 2.688 9.020 -11.538 37.393 7 CC_DT7DC8:DG13DA14_DD C 7 ? D 14 ? C 8 ? D 13 ? 1 A DC 8 1_555 B DG 3 1_555 A DG 9 1_555 B DC 2 1_555 0.321 1.242 3.340 -0.958 9.005 34.604 0.635 -0.670 3.533 14.827 1.577 35.734 8 CC_DC8DG9:DC12DG13_DD C 8 ? D 13 ? C 9 ? D 12 ? # _atom_sites.entry_id 1QRV _atom_sites.fract_transf_matrix[1][1] 0.022862 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018588 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011515 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NA O P S # loop_