data_1QX6 # _entry.id 1QX6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1QX6 RCSB RCSB020176 WWPDB D_1000020176 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1QWZ 'Same protein with different complex' unspecified PDB 1QXA 'Same protein with different complex' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1QX6 _pdbx_database_status.recvd_initial_deposition_date 2003-09-04 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zong, Y.' 1 'Mazmanian, S.K.' 2 'Schneewind, O.' 3 'Narayana, S.V.' 4 # _citation.id primary _citation.title 'The structure of sortase B, a cysteine transpeptidase that tethers surface protein to the Staphylococcus aureus cell wall' _citation.journal_abbrev Structure _citation.journal_volume 12 _citation.page_first 105 _citation.page_last 112 _citation.year 2004 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 14725770 _citation.pdbx_database_id_DOI 10.1016/j.str.2003.11.021 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Zong, Y.' 1 primary 'Mazmanian, S.K.' 2 primary 'Schneewind, O.' 3 primary 'Narayana, S.V.' 4 # _cell.entry_id 1QX6 _cell.length_a 57.630 _cell.length_b 66.589 _cell.length_c 101.799 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QX6 _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'NPQTN specific sortase B' 25772.293 1 ? ? ? ? 2 non-polymer syn 'N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE' 360.429 1 ? ? ? ? 3 water nat water 18.015 25 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;EDKQERANYEKLQQKFQ(MSE)L(MSE)SKHQAHVRPQFESLEKINKDIVGWIKLSGTSLNYPVLQGKTNHDYLNLDFER EHRRKGSIF(MSE)DFRNELKNLNHNTILYGHHVGDNT(MSE)FDVLEDYLKQSFYEKHKIIEFDNKYGKYQLQVFSAYK TTTKDNYIRTDFENDQDYQQFLDETKRKSVINSDVNVTVKDRI(MSE)TLSTCEDAYSETTKRIVVVAKIIKVS ; _entity_poly.pdbx_seq_one_letter_code_can ;EDKQERANYEKLQQKFQMLMSKHQAHVRPQFESLEKINKDIVGWIKLSGTSLNYPVLQGKTNHDYLNLDFEREHRRKGSI FMDFRNELKNLNHNTILYGHHVGDNTMFDVLEDYLKQSFYEKHKIIEFDNKYGKYQLQVFSAYKTTTKDNYIRTDFENDQ DYQQFLDETKRKSVINSDVNVTVKDRIMTLSTCEDAYSETTKRIVVVAKIIKVS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 ASP n 1 3 LYS n 1 4 GLN n 1 5 GLU n 1 6 ARG n 1 7 ALA n 1 8 ASN n 1 9 TYR n 1 10 GLU n 1 11 LYS n 1 12 LEU n 1 13 GLN n 1 14 GLN n 1 15 LYS n 1 16 PHE n 1 17 GLN n 1 18 MSE n 1 19 LEU n 1 20 MSE n 1 21 SER n 1 22 LYS n 1 23 HIS n 1 24 GLN n 1 25 ALA n 1 26 HIS n 1 27 VAL n 1 28 ARG n 1 29 PRO n 1 30 GLN n 1 31 PHE n 1 32 GLU n 1 33 SER n 1 34 LEU n 1 35 GLU n 1 36 LYS n 1 37 ILE n 1 38 ASN n 1 39 LYS n 1 40 ASP n 1 41 ILE n 1 42 VAL n 1 43 GLY n 1 44 TRP n 1 45 ILE n 1 46 LYS n 1 47 LEU n 1 48 SER n 1 49 GLY n 1 50 THR n 1 51 SER n 1 52 LEU n 1 53 ASN n 1 54 TYR n 1 55 PRO n 1 56 VAL n 1 57 LEU n 1 58 GLN n 1 59 GLY n 1 60 LYS n 1 61 THR n 1 62 ASN n 1 63 HIS n 1 64 ASP n 1 65 TYR n 1 66 LEU n 1 67 ASN n 1 68 LEU n 1 69 ASP n 1 70 PHE n 1 71 GLU n 1 72 ARG n 1 73 GLU n 1 74 HIS n 1 75 ARG n 1 76 ARG n 1 77 LYS n 1 78 GLY n 1 79 SER n 1 80 ILE n 1 81 PHE n 1 82 MSE n 1 83 ASP n 1 84 PHE n 1 85 ARG n 1 86 ASN n 1 87 GLU n 1 88 LEU n 1 89 LYS n 1 90 ASN n 1 91 LEU n 1 92 ASN n 1 93 HIS n 1 94 ASN n 1 95 THR n 1 96 ILE n 1 97 LEU n 1 98 TYR n 1 99 GLY n 1 100 HIS n 1 101 HIS n 1 102 VAL n 1 103 GLY n 1 104 ASP n 1 105 ASN n 1 106 THR n 1 107 MSE n 1 108 PHE n 1 109 ASP n 1 110 VAL n 1 111 LEU n 1 112 GLU n 1 113 ASP n 1 114 TYR n 1 115 LEU n 1 116 LYS n 1 117 GLN n 1 118 SER n 1 119 PHE n 1 120 TYR n 1 121 GLU n 1 122 LYS n 1 123 HIS n 1 124 LYS n 1 125 ILE n 1 126 ILE n 1 127 GLU n 1 128 PHE n 1 129 ASP n 1 130 ASN n 1 131 LYS n 1 132 TYR n 1 133 GLY n 1 134 LYS n 1 135 TYR n 1 136 GLN n 1 137 LEU n 1 138 GLN n 1 139 VAL n 1 140 PHE n 1 141 SER n 1 142 ALA n 1 143 TYR n 1 144 LYS n 1 145 THR n 1 146 THR n 1 147 THR n 1 148 LYS n 1 149 ASP n 1 150 ASN n 1 151 TYR n 1 152 ILE n 1 153 ARG n 1 154 THR n 1 155 ASP n 1 156 PHE n 1 157 GLU n 1 158 ASN n 1 159 ASP n 1 160 GLN n 1 161 ASP n 1 162 TYR n 1 163 GLN n 1 164 GLN n 1 165 PHE n 1 166 LEU n 1 167 ASP n 1 168 GLU n 1 169 THR n 1 170 LYS n 1 171 ARG n 1 172 LYS n 1 173 SER n 1 174 VAL n 1 175 ILE n 1 176 ASN n 1 177 SER n 1 178 ASP n 1 179 VAL n 1 180 ASN n 1 181 VAL n 1 182 THR n 1 183 VAL n 1 184 LYS n 1 185 ASP n 1 186 ARG n 1 187 ILE n 1 188 MSE n 1 189 THR n 1 190 LEU n 1 191 SER n 1 192 THR n 1 193 CYS n 1 194 GLU n 1 195 ASP n 1 196 ALA n 1 197 TYR n 1 198 SER n 1 199 GLU n 1 200 THR n 1 201 THR n 1 202 LYS n 1 203 ARG n 1 204 ILE n 1 205 VAL n 1 206 VAL n 1 207 VAL n 1 208 ALA n 1 209 LYS n 1 210 ILE n 1 211 ILE n 1 212 LYS n 1 213 VAL n 1 214 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Staphylococcus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Staphylococcus aureus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1280 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8NX63_STAAW _struct_ref.pdbx_db_accession Q8NX63 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EDKQERANYEKLQQKFQMLMSKHQAHVRPQFESLEKINKDIVGWIKLSGTSLNYPVLQGKTNHDYLNLDFEREHRRKGSI FMDFRNELKNLNHNTILYGHHVGDNTMFDVLEDYLKQSFYEKHKIIEFDNKYGKYQLQVFSAYKTTTKDNYIRTDFENDQ DYQQFLDETKRKSVINSDVNVTVKDRIMTLSTCEDAYSETTKRIVVVAKIIKVS ; _struct_ref.pdbx_align_begin 31 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1QX6 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 214 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8NX63 _struct_ref_seq.db_align_beg 31 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 244 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 31 _struct_ref_seq.pdbx_auth_seq_align_end 244 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1QX6 MSE A 18 ? UNP Q8NX63 MET 48 'MODIFIED RESIDUE' 48 1 1 1QX6 MSE A 20 ? UNP Q8NX63 MET 50 'MODIFIED RESIDUE' 50 2 1 1QX6 MSE A 82 ? UNP Q8NX63 MET 112 'MODIFIED RESIDUE' 112 3 1 1QX6 MSE A 107 ? UNP Q8NX63 MET 137 'MODIFIED RESIDUE' 137 4 1 1QX6 MSE A 188 ? UNP Q8NX63 MET 218 'MODIFIED RESIDUE' 218 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 E64 non-polymer . 'N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE' ? 'C15 H30 N5 O5 1' 360.429 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1QX6 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.89 _exptl_crystal.density_percent_sol 35.08 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 300 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.3 _exptl_crystal_grow.pdbx_details 'Ammonium Sulfate, Sodium Chloride, MES, pH 6.3, VAPOR DIFFUSION, HANGING DROP, temperature 300K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2002-08-05 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Beamline setup' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9791 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-BM _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9791 # _reflns.entry_id 1QX6 _reflns.observed_criterion_sigma_I 3.0 _reflns.observed_criterion_sigma_F 3.0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.7 _reflns.number_obs 10290 _reflns.number_all 10459 _reflns.percent_possible_obs 99.3 _reflns.pdbx_Rmerge_I_obs 0.059 _reflns.pdbx_Rsym_value 0.036 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 21.9 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.7 _reflns_shell.d_res_low 2.8 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1QX6 _refine.ls_number_reflns_obs 10186 _refine.ls_number_reflns_all 10290 _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 841279.79 _refine.pdbx_data_cutoff_low_absF 0 _refine.pdbx_data_cutoff_high_rms_absF 841279.79 _refine.ls_d_res_low 40.06 _refine.ls_d_res_high 2.70 _refine.ls_percent_reflns_obs 97.9 _refine.ls_R_factor_obs 0.235 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.235 _refine.ls_R_factor_R_free 0.282 _refine.ls_R_factor_R_free_error 0.009 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.5 _refine.ls_number_reflns_R_free 965 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 36.3 _refine.aniso_B[1][1] 0.91 _refine.aniso_B[2][2] 6.29 _refine.aniso_B[3][3] -7.20 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.358113 _refine.solvent_model_param_bsol 27.6533 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1QX6 _refine_analyze.Luzzati_coordinate_error_obs 0.33 _refine_analyze.Luzzati_sigma_a_obs 0.31 _refine_analyze.Luzzati_d_res_low_obs 5 _refine_analyze.Luzzati_coordinate_error_free 0.41 _refine_analyze.Luzzati_sigma_a_free 0.41 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1798 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 35 _refine_hist.number_atoms_solvent 25 _refine_hist.number_atoms_total 1858 _refine_hist.d_res_high 2.70 _refine_hist.d_res_low 40.06 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.015 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.9 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 23.3 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.02 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.70 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 3.03 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.40 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 3.62 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.70 _refine_ls_shell.d_res_low 2.87 _refine_ls_shell.number_reflns_R_work 1528 _refine_ls_shell.R_factor_R_work 0.275 _refine_ls_shell.percent_reflns_obs 95.9 _refine_ls_shell.R_factor_R_free 0.343 _refine_ls_shell.R_factor_R_free_error 0.031 _refine_ls_shell.percent_reflns_R_free 7.6 _refine_ls_shell.number_reflns_R_free 125 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM E64.TOP 'X-RAY DIFFRACTION' 3 ION.PARAM ? 'X-RAY DIFFRACTION' 4 E64.PARAM ? 'X-RAY DIFFRACTION' # _struct.entry_id 1QX6 _struct.title 'Crystal structure of Sortase B complexed with E-64' _struct.pdbx_descriptor 'NPQTN specific Sortase B' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1QX6 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'Sortase, Transpeptidase, cysteine protease, E-64, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 3 ? HIS A 23 ? LYS A 33 HIS A 53 1 ? 21 HELX_P HELX_P2 2 VAL A 27 ? ASN A 38 ? VAL A 57 ASN A 68 1 ? 12 HELX_P HELX_P3 3 PHE A 108 ? LEU A 115 ? PHE A 138 LEU A 145 5 ? 8 HELX_P HELX_P4 4 LYS A 116 ? HIS A 123 ? LYS A 146 HIS A 153 1 ? 8 HELX_P HELX_P5 5 ASN A 158 ? SER A 173 ? ASN A 188 SER A 203 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A CYS 193 SG ? ? ? 1_555 B E64 . C2 ? ? A CYS 223 A E64 245 1_555 ? ? ? ? ? ? ? 1.928 ? covale2 covale ? ? A GLN 17 C ? ? ? 1_555 A MSE 18 N ? ? A GLN 47 A MSE 48 1_555 ? ? ? ? ? ? ? 1.335 ? covale3 covale ? ? A MSE 18 C ? ? ? 1_555 A LEU 19 N ? ? A MSE 48 A LEU 49 1_555 ? ? ? ? ? ? ? 1.327 ? covale4 covale ? ? A LEU 19 C ? ? ? 1_555 A MSE 20 N ? ? A LEU 49 A MSE 50 1_555 ? ? ? ? ? ? ? 1.332 ? covale5 covale ? ? A MSE 20 C ? ? ? 1_555 A SER 21 N ? ? A MSE 50 A SER 51 1_555 ? ? ? ? ? ? ? 1.330 ? covale6 covale ? ? A PHE 81 C ? ? ? 1_555 A MSE 82 N ? ? A PHE 111 A MSE 112 1_555 ? ? ? ? ? ? ? 1.332 ? covale7 covale ? ? A MSE 82 C ? ? ? 1_555 A ASP 83 N ? ? A MSE 112 A ASP 113 1_555 ? ? ? ? ? ? ? 1.328 ? covale8 covale ? ? A THR 106 C ? ? ? 1_555 A MSE 107 N ? ? A THR 136 A MSE 137 1_555 ? ? ? ? ? ? ? 1.328 ? covale9 covale ? ? A MSE 107 C ? ? ? 1_555 A PHE 108 N ? ? A MSE 137 A PHE 138 1_555 ? ? ? ? ? ? ? 1.324 ? covale10 covale ? ? A ILE 187 C ? ? ? 1_555 A MSE 188 N ? ? A ILE 217 A MSE 218 1_555 ? ? ? ? ? ? ? 1.330 ? covale11 covale ? ? A MSE 188 C ? ? ? 1_555 A THR 189 N ? ? A MSE 218 A THR 219 1_555 ? ? ? ? ? ? ? 1.332 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 9 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 41 ? LYS A 46 ? ILE A 71 LYS A 76 A 2 ILE A 80 ? MSE A 82 ? ILE A 110 MSE A 112 A 3 ASN A 94 ? HIS A 100 ? ASN A 124 HIS A 130 A 4 ILE A 187 ? CYS A 193 ? ILE A 217 CYS A 223 A 5 ARG A 203 ? LYS A 212 ? ARG A 233 LYS A 242 A 6 GLY A 133 ? THR A 145 ? GLY A 163 THR A 175 A 7 ILE A 125 ? ASN A 130 ? ILE A 155 ASN A 160 A 8 ILE A 41 ? LYS A 46 ? ILE A 71 LYS A 76 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 2 3 N PHE A 81 ? N PHE A 111 O TYR A 98 ? O TYR A 128 A 3 4 N THR A 95 ? N THR A 125 O THR A 189 ? O THR A 219 A 4 5 N LEU A 190 ? N LEU A 220 O VAL A 206 ? O VAL A 236 A 5 6 O ILE A 211 ? O ILE A 241 N GLN A 136 ? N GLN A 166 A 6 7 O LEU A 137 ? O LEU A 167 N ILE A 126 ? N ILE A 156 A 7 8 O GLU A 127 ? O GLU A 157 N LYS A 46 ? N LYS A 76 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 15 _struct_site.details 'BINDING SITE FOR RESIDUE E64 A 245' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 15 LYS A 11 ? LYS A 41 . ? 8_555 ? 2 AC1 15 ASN A 62 ? ASN A 92 . ? 1_555 ? 3 AC1 15 HIS A 63 ? HIS A 93 . ? 1_555 ? 4 AC1 15 PHE A 84 ? PHE A 114 . ? 1_555 ? 5 AC1 15 TYR A 98 ? TYR A 128 . ? 1_555 ? 6 AC1 15 ILE A 152 ? ILE A 182 . ? 1_555 ? 7 AC1 15 GLN A 160 ? GLN A 190 . ? 3_655 ? 8 AC1 15 GLN A 164 ? GLN A 194 . ? 3_655 ? 9 AC1 15 SER A 191 ? SER A 221 . ? 1_555 ? 10 AC1 15 THR A 192 ? THR A 222 . ? 1_555 ? 11 AC1 15 CYS A 193 ? CYS A 223 . ? 1_555 ? 12 AC1 15 GLU A 194 ? GLU A 224 . ? 1_555 ? 13 AC1 15 TYR A 197 ? TYR A 227 . ? 1_555 ? 14 AC1 15 ARG A 203 ? ARG A 233 . ? 1_555 ? 15 AC1 15 HOH C . ? HOH A 265 . ? 1_555 ? # _database_PDB_matrix.entry_id 1QX6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1QX6 _atom_sites.fract_transf_matrix[1][1] 0.017352 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015017 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009823 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 31 31 GLU GLU A . n A 1 2 ASP 2 32 32 ASP ASP A . n A 1 3 LYS 3 33 33 LYS LYS A . n A 1 4 GLN 4 34 34 GLN GLN A . n A 1 5 GLU 5 35 35 GLU GLU A . n A 1 6 ARG 6 36 36 ARG ARG A . n A 1 7 ALA 7 37 37 ALA ALA A . n A 1 8 ASN 8 38 38 ASN ASN A . n A 1 9 TYR 9 39 39 TYR TYR A . n A 1 10 GLU 10 40 40 GLU GLU A . n A 1 11 LYS 11 41 41 LYS LYS A . n A 1 12 LEU 12 42 42 LEU LEU A . n A 1 13 GLN 13 43 43 GLN GLN A . n A 1 14 GLN 14 44 44 GLN GLN A . n A 1 15 LYS 15 45 45 LYS LYS A . n A 1 16 PHE 16 46 46 PHE PHE A . n A 1 17 GLN 17 47 47 GLN GLN A . n A 1 18 MSE 18 48 48 MSE MSE A . n A 1 19 LEU 19 49 49 LEU LEU A . n A 1 20 MSE 20 50 50 MSE MSE A . n A 1 21 SER 21 51 51 SER SER A . n A 1 22 LYS 22 52 52 LYS LYS A . n A 1 23 HIS 23 53 53 HIS HIS A . n A 1 24 GLN 24 54 54 GLN GLN A . n A 1 25 ALA 25 55 55 ALA ALA A . n A 1 26 HIS 26 56 56 HIS HIS A . n A 1 27 VAL 27 57 57 VAL VAL A . n A 1 28 ARG 28 58 58 ARG ARG A . n A 1 29 PRO 29 59 59 PRO PRO A . n A 1 30 GLN 30 60 60 GLN GLN A . n A 1 31 PHE 31 61 61 PHE PHE A . n A 1 32 GLU 32 62 62 GLU GLU A . n A 1 33 SER 33 63 63 SER SER A . n A 1 34 LEU 34 64 64 LEU LEU A . n A 1 35 GLU 35 65 65 GLU GLU A . n A 1 36 LYS 36 66 66 LYS LYS A . n A 1 37 ILE 37 67 67 ILE ILE A . n A 1 38 ASN 38 68 68 ASN ASN A . n A 1 39 LYS 39 69 69 LYS LYS A . n A 1 40 ASP 40 70 70 ASP ASP A . n A 1 41 ILE 41 71 71 ILE ILE A . n A 1 42 VAL 42 72 72 VAL VAL A . n A 1 43 GLY 43 73 73 GLY GLY A . n A 1 44 TRP 44 74 74 TRP TRP A . n A 1 45 ILE 45 75 75 ILE ILE A . n A 1 46 LYS 46 76 76 LYS LYS A . n A 1 47 LEU 47 77 77 LEU LEU A . n A 1 48 SER 48 78 78 SER SER A . n A 1 49 GLY 49 79 79 GLY GLY A . n A 1 50 THR 50 80 80 THR THR A . n A 1 51 SER 51 81 81 SER SER A . n A 1 52 LEU 52 82 82 LEU LEU A . n A 1 53 ASN 53 83 83 ASN ASN A . n A 1 54 TYR 54 84 84 TYR TYR A . n A 1 55 PRO 55 85 85 PRO PRO A . n A 1 56 VAL 56 86 86 VAL VAL A . n A 1 57 LEU 57 87 87 LEU LEU A . n A 1 58 GLN 58 88 88 GLN GLN A . n A 1 59 GLY 59 89 89 GLY GLY A . n A 1 60 LYS 60 90 90 LYS LYS A . n A 1 61 THR 61 91 91 THR THR A . n A 1 62 ASN 62 92 92 ASN ASN A . n A 1 63 HIS 63 93 93 HIS HIS A . n A 1 64 ASP 64 94 94 ASP ASP A . n A 1 65 TYR 65 95 95 TYR TYR A . n A 1 66 LEU 66 96 96 LEU LEU A . n A 1 67 ASN 67 97 97 ASN ASN A . n A 1 68 LEU 68 98 98 LEU LEU A . n A 1 69 ASP 69 99 99 ASP ASP A . n A 1 70 PHE 70 100 100 PHE PHE A . n A 1 71 GLU 71 101 101 GLU GLU A . n A 1 72 ARG 72 102 102 ARG ARG A . n A 1 73 GLU 73 103 103 GLU GLU A . n A 1 74 HIS 74 104 104 HIS HIS A . n A 1 75 ARG 75 105 105 ARG ARG A . n A 1 76 ARG 76 106 106 ARG ARG A . n A 1 77 LYS 77 107 107 LYS LYS A . n A 1 78 GLY 78 108 108 GLY GLY A . n A 1 79 SER 79 109 109 SER SER A . n A 1 80 ILE 80 110 110 ILE ILE A . n A 1 81 PHE 81 111 111 PHE PHE A . n A 1 82 MSE 82 112 112 MSE MSE A . n A 1 83 ASP 83 113 113 ASP ASP A . n A 1 84 PHE 84 114 114 PHE PHE A . n A 1 85 ARG 85 115 115 ARG ARG A . n A 1 86 ASN 86 116 116 ASN ASN A . n A 1 87 GLU 87 117 117 GLU GLU A . n A 1 88 LEU 88 118 118 LEU LEU A . n A 1 89 LYS 89 119 119 LYS LYS A . n A 1 90 ASN 90 120 120 ASN ASN A . n A 1 91 LEU 91 121 121 LEU LEU A . n A 1 92 ASN 92 122 122 ASN ASN A . n A 1 93 HIS 93 123 123 HIS HIS A . n A 1 94 ASN 94 124 124 ASN ASN A . n A 1 95 THR 95 125 125 THR THR A . n A 1 96 ILE 96 126 126 ILE ILE A . n A 1 97 LEU 97 127 127 LEU LEU A . n A 1 98 TYR 98 128 128 TYR TYR A . n A 1 99 GLY 99 129 129 GLY GLY A . n A 1 100 HIS 100 130 130 HIS HIS A . n A 1 101 HIS 101 131 131 HIS HIS A . n A 1 102 VAL 102 132 132 VAL VAL A . n A 1 103 GLY 103 133 133 GLY GLY A . n A 1 104 ASP 104 134 134 ASP ASP A . n A 1 105 ASN 105 135 135 ASN ASN A . n A 1 106 THR 106 136 136 THR THR A . n A 1 107 MSE 107 137 137 MSE MSE A . n A 1 108 PHE 108 138 138 PHE PHE A . n A 1 109 ASP 109 139 139 ASP ASP A . n A 1 110 VAL 110 140 140 VAL VAL A . n A 1 111 LEU 111 141 141 LEU LEU A . n A 1 112 GLU 112 142 142 GLU GLU A . n A 1 113 ASP 113 143 143 ASP ASP A . n A 1 114 TYR 114 144 144 TYR TYR A . n A 1 115 LEU 115 145 145 LEU LEU A . n A 1 116 LYS 116 146 146 LYS LYS A . n A 1 117 GLN 117 147 147 GLN GLN A . n A 1 118 SER 118 148 148 SER SER A . n A 1 119 PHE 119 149 149 PHE PHE A . n A 1 120 TYR 120 150 150 TYR TYR A . n A 1 121 GLU 121 151 151 GLU GLU A . n A 1 122 LYS 122 152 152 LYS LYS A . n A 1 123 HIS 123 153 153 HIS HIS A . n A 1 124 LYS 124 154 154 LYS LYS A . n A 1 125 ILE 125 155 155 ILE ILE A . n A 1 126 ILE 126 156 156 ILE ILE A . n A 1 127 GLU 127 157 157 GLU GLU A . n A 1 128 PHE 128 158 158 PHE PHE A . n A 1 129 ASP 129 159 159 ASP ASP A . n A 1 130 ASN 130 160 160 ASN ASN A . n A 1 131 LYS 131 161 161 LYS LYS A . n A 1 132 TYR 132 162 162 TYR TYR A . n A 1 133 GLY 133 163 163 GLY GLY A . n A 1 134 LYS 134 164 164 LYS LYS A . n A 1 135 TYR 135 165 165 TYR TYR A . n A 1 136 GLN 136 166 166 GLN GLN A . n A 1 137 LEU 137 167 167 LEU LEU A . n A 1 138 GLN 138 168 168 GLN GLN A . n A 1 139 VAL 139 169 169 VAL VAL A . n A 1 140 PHE 140 170 170 PHE PHE A . n A 1 141 SER 141 171 171 SER SER A . n A 1 142 ALA 142 172 172 ALA ALA A . n A 1 143 TYR 143 173 173 TYR TYR A . n A 1 144 LYS 144 174 174 LYS LYS A . n A 1 145 THR 145 175 175 THR THR A . n A 1 146 THR 146 176 176 THR THR A . n A 1 147 THR 147 177 177 THR THR A . n A 1 148 LYS 148 178 178 LYS LYS A . n A 1 149 ASP 149 179 179 ASP ASP A . n A 1 150 ASN 150 180 180 ASN ASN A . n A 1 151 TYR 151 181 181 TYR TYR A . n A 1 152 ILE 152 182 182 ILE ILE A . n A 1 153 ARG 153 183 183 ARG ARG A . n A 1 154 THR 154 184 184 THR THR A . n A 1 155 ASP 155 185 185 ASP ASP A . n A 1 156 PHE 156 186 186 PHE PHE A . n A 1 157 GLU 157 187 187 GLU GLU A . n A 1 158 ASN 158 188 188 ASN ASN A . n A 1 159 ASP 159 189 189 ASP ASP A . n A 1 160 GLN 160 190 190 GLN GLN A . n A 1 161 ASP 161 191 191 ASP ASP A . n A 1 162 TYR 162 192 192 TYR TYR A . n A 1 163 GLN 163 193 193 GLN GLN A . n A 1 164 GLN 164 194 194 GLN GLN A . n A 1 165 PHE 165 195 195 PHE PHE A . n A 1 166 LEU 166 196 196 LEU LEU A . n A 1 167 ASP 167 197 197 ASP ASP A . n A 1 168 GLU 168 198 198 GLU GLU A . n A 1 169 THR 169 199 199 THR THR A . n A 1 170 LYS 170 200 200 LYS LYS A . n A 1 171 ARG 171 201 201 ARG ARG A . n A 1 172 LYS 172 202 202 LYS LYS A . n A 1 173 SER 173 203 203 SER SER A . n A 1 174 VAL 174 204 204 VAL VAL A . n A 1 175 ILE 175 205 205 ILE ILE A . n A 1 176 ASN 176 206 206 ASN ASN A . n A 1 177 SER 177 207 207 SER SER A . n A 1 178 ASP 178 208 208 ASP ASP A . n A 1 179 VAL 179 209 209 VAL VAL A . n A 1 180 ASN 180 210 210 ASN ASN A . n A 1 181 VAL 181 211 211 VAL VAL A . n A 1 182 THR 182 212 212 THR THR A . n A 1 183 VAL 183 213 213 VAL VAL A . n A 1 184 LYS 184 214 214 LYS LYS A . n A 1 185 ASP 185 215 215 ASP ASP A . n A 1 186 ARG 186 216 216 ARG ARG A . n A 1 187 ILE 187 217 217 ILE ILE A . n A 1 188 MSE 188 218 218 MSE MSE A . n A 1 189 THR 189 219 219 THR THR A . n A 1 190 LEU 190 220 220 LEU LEU A . n A 1 191 SER 191 221 221 SER SER A . n A 1 192 THR 192 222 222 THR THR A . n A 1 193 CYS 193 223 223 CYS CYS A . n A 1 194 GLU 194 224 224 GLU GLU A . n A 1 195 ASP 195 225 225 ASP ASP A . n A 1 196 ALA 196 226 226 ALA ALA A . n A 1 197 TYR 197 227 227 TYR TYR A . n A 1 198 SER 198 228 228 SER SER A . n A 1 199 GLU 199 229 229 GLU GLU A . n A 1 200 THR 200 230 230 THR THR A . n A 1 201 THR 201 231 231 THR THR A . n A 1 202 LYS 202 232 232 LYS LYS A . n A 1 203 ARG 203 233 233 ARG ARG A . n A 1 204 ILE 204 234 234 ILE ILE A . n A 1 205 VAL 205 235 235 VAL VAL A . n A 1 206 VAL 206 236 236 VAL VAL A . n A 1 207 VAL 207 237 237 VAL VAL A . n A 1 208 ALA 208 238 238 ALA ALA A . n A 1 209 LYS 209 239 239 LYS LYS A . n A 1 210 ILE 210 240 240 ILE ILE A . n A 1 211 ILE 211 241 241 ILE ILE A . n A 1 212 LYS 212 242 242 LYS LYS A . n A 1 213 VAL 213 243 243 VAL VAL A . n A 1 214 SER 214 244 244 SER SER A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 E64 1 245 245 E64 E64 A . C 3 HOH 1 247 247 HOH HOH A . C 3 HOH 2 248 248 HOH HOH A . C 3 HOH 3 249 249 HOH HOH A . C 3 HOH 4 250 250 HOH HOH A . C 3 HOH 5 251 251 HOH HOH A . C 3 HOH 6 252 252 HOH HOH A . C 3 HOH 7 253 253 HOH HOH A . C 3 HOH 8 254 254 HOH HOH A . C 3 HOH 9 255 255 HOH HOH A . C 3 HOH 10 256 256 HOH HOH A . C 3 HOH 11 257 257 HOH HOH A . C 3 HOH 12 258 258 HOH HOH A . C 3 HOH 13 259 259 HOH HOH A . C 3 HOH 14 260 260 HOH HOH A . C 3 HOH 15 261 261 HOH HOH A . C 3 HOH 16 262 262 HOH HOH A . C 3 HOH 17 263 263 HOH HOH A . C 3 HOH 18 264 264 HOH HOH A . C 3 HOH 19 265 265 HOH HOH A . C 3 HOH 20 266 266 HOH HOH A . C 3 HOH 21 267 267 HOH HOH A . C 3 HOH 22 268 268 HOH HOH A . C 3 HOH 23 269 269 HOH HOH A . C 3 HOH 24 270 270 HOH HOH A . C 3 HOH 25 271 271 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 18 A MSE 48 ? MET SELENOMETHIONINE 2 A MSE 20 A MSE 50 ? MET SELENOMETHIONINE 3 A MSE 82 A MSE 112 ? MET SELENOMETHIONINE 4 A MSE 107 A MSE 137 ? MET SELENOMETHIONINE 5 A MSE 188 A MSE 218 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-04-06 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.0 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 CNS phasing . ? 4 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OE1 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 GLN _pdbx_validate_symm_contact.auth_seq_id_1 166 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 OE1 _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 GLN _pdbx_validate_symm_contact.auth_seq_id_2 166 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_555 _pdbx_validate_symm_contact.dist 2.12 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 54 ? ? 52.81 -104.63 2 1 ASN A 83 ? ? -162.05 75.49 3 1 LYS A 119 ? ? -52.36 -75.40 4 1 LEU A 121 ? ? -48.65 153.03 5 1 MSE A 137 ? ? 41.74 -121.83 6 1 PHE A 138 ? ? -99.52 32.55 7 1 HIS A 153 ? ? -140.11 47.09 8 1 ASP A 179 ? ? -123.05 -156.97 9 1 ASN A 180 ? ? 66.75 -62.50 10 1 THR A 184 ? ? -66.22 -73.36 11 1 THR A 230 ? ? -174.43 113.19 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE' E64 3 water HOH #