data_1R1Q # _entry.id 1R1Q # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.292 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1R1Q RCSB RCSB020331 WWPDB D_1000020331 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1r1p . unspecified PDB 1r1s . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1R1Q _pdbx_database_status.recvd_initial_deposition_date 2003-09-24 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cho, S.' 1 'Mariuzza, R.A.' 2 # _citation.id primary _citation.title ;Structural basis for differential recognition of tyrosine-phosphorylated sites in the linker for activation of T cells (LAT) by the adaptor Gads. ; _citation.journal_abbrev 'Embo J.' _citation.journal_volume 23 _citation.page_first 1441 _citation.page_last 1451 _citation.year 2004 _citation.journal_id_ASTM EMJODG _citation.country UK _citation.journal_id_ISSN 0261-4189 _citation.journal_id_CSD 0897 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15029250 _citation.pdbx_database_id_DOI 10.1038/sj.emboj.7600168 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Cho, S.' 1 primary 'Velikovsky, C.A.' 2 primary 'Swaminathan, C.P.' 3 primary 'Houtman, J.C.' 4 primary 'Samelson, L.E.' 5 primary 'Mariuzza, R.A.' 6 # _cell.entry_id 1R1Q _cell.length_a 42.710 _cell.length_b 51.810 _cell.length_c 43.970 _cell.angle_alpha 90.00 _cell.angle_beta 101.38 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1R1Q _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'GRB2-related adaptor protein 2' 11823.300 2 ? ? 'Gads-SH2 domain' ? 2 polymer syn 'LAT pY191 peptide' 885.878 2 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 4 ? ? ? ? 4 water nat water 18.015 142 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;GADS protein, Growth factor receptor binding protein, GRBLG, GRB-2-like protein, GRB2L, Hematopoietic cell-associated adaptor protein GrpL, GRB-2-related monocytic adapter protein, Monocytic adapter, MONA, Adapter protein GRID ; # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSFIDIEFPEWFHEGLSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDTKGNYFLWTEKFPSLNK LVDYYRTTSISKQKQVFLRD ; ;GSFIDIEFPEWFHEGLSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDTKGNYFLWTEKFPSLNK LVDYYRTTSISKQKQVFLRD ; A,B ? 2 'polypeptide(L)' no yes '(ACE)RE(PTR)VNV' XREYVNV C,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 PHE n 1 4 ILE n 1 5 ASP n 1 6 ILE n 1 7 GLU n 1 8 PHE n 1 9 PRO n 1 10 GLU n 1 11 TRP n 1 12 PHE n 1 13 HIS n 1 14 GLU n 1 15 GLY n 1 16 LEU n 1 17 SER n 1 18 ARG n 1 19 HIS n 1 20 GLN n 1 21 ALA n 1 22 GLU n 1 23 ASN n 1 24 LEU n 1 25 LEU n 1 26 MET n 1 27 GLY n 1 28 LYS n 1 29 ASP n 1 30 ILE n 1 31 GLY n 1 32 PHE n 1 33 PHE n 1 34 ILE n 1 35 ILE n 1 36 ARG n 1 37 ALA n 1 38 SER n 1 39 GLN n 1 40 SER n 1 41 SER n 1 42 PRO n 1 43 GLY n 1 44 ASP n 1 45 PHE n 1 46 SER n 1 47 ILE n 1 48 SER n 1 49 VAL n 1 50 ARG n 1 51 HIS n 1 52 GLU n 1 53 ASP n 1 54 ASP n 1 55 VAL n 1 56 GLN n 1 57 HIS n 1 58 PHE n 1 59 LYS n 1 60 VAL n 1 61 MET n 1 62 ARG n 1 63 ASP n 1 64 THR n 1 65 LYS n 1 66 GLY n 1 67 ASN n 1 68 TYR n 1 69 PHE n 1 70 LEU n 1 71 TRP n 1 72 THR n 1 73 GLU n 1 74 LYS n 1 75 PHE n 1 76 PRO n 1 77 SER n 1 78 LEU n 1 79 ASN n 1 80 LYS n 1 81 LEU n 1 82 VAL n 1 83 ASP n 1 84 TYR n 1 85 TYR n 1 86 ARG n 1 87 THR n 1 88 THR n 1 89 SER n 1 90 ILE n 1 91 SER n 1 92 LYS n 1 93 GLN n 1 94 LYS n 1 95 GLN n 1 96 VAL n 1 97 PHE n 1 98 LEU n 1 99 ARG n 1 100 ASP n 2 1 ACE n 2 2 ARG n 2 3 GLU n 2 4 PTR n 2 5 VAL n 2 6 ASN n 2 7 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene GADS _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'THE PEPTIDE WAS CHEMICALLY SYNTHESIZED' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP GRAP2_MOUSE O89100 1 ;FIDIEFPEWFHEGLSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDTKGNYFLWTEKFPSLNKLV DYYRTTSISKQKQVFLRD ; 50 ? 2 PDB 1R1Q 1R1Q 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1R1Q A 3 ? 100 ? O89100 50 ? 147 ? 52 149 2 1 1R1Q B 3 ? 100 ? O89100 50 ? 147 ? 52 149 3 2 1R1Q C 1 ? 7 ? 1R1Q 555 ? 561 ? 555 561 4 2 1R1Q D 1 ? 7 ? 1R1Q 555 ? 561 ? 555 561 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1R1Q GLY A 1 ? UNP O89100 ? ? 'CLONING ARTIFACT' 50 1 1 1R1Q SER A 2 ? UNP O89100 ? ? 'CLONING ARTIFACT' 51 2 2 1R1Q GLY B 1 ? UNP O89100 ? ? 'CLONING ARTIFACT' 50 3 2 1R1Q SER B 2 ? UNP O89100 ? ? 'CLONING ARTIFACT' 51 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 PTR 'L-peptide linking' n O-PHOSPHOTYROSINE PHOSPHONOTYROSINE 'C9 H12 N O6 P' 261.168 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1R1Q _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.88 _exptl_crystal.density_percent_sol 34.43 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.7 _exptl_crystal_grow.pdbx_details '0.1mM Tris-HCl, 2.5M ammonium sulfate, pH 8.7, VAPOR DIFFUSION, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2003-04-23 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'osmic mirror' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 1R1Q _reflns.observed_criterion_sigma_F 2.0 _reflns.observed_criterion_sigma_I 2.0 _reflns.d_resolution_high 1.62 _reflns.d_resolution_low 43.10 _reflns.number_all 117803 _reflns.number_obs 26632 _reflns.percent_possible_obs 96.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1R1Q _refine.ls_number_reflns_obs 16497 _refine.ls_number_reflns_all 16497 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 43.03 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 99.07 _refine.ls_R_factor_obs 0.17906 _refine.ls_R_factor_all 0.17906 _refine.ls_R_factor_R_work 0.17649 _refine.ls_R_factor_R_free 0.2253 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.2 _refine.ls_number_reflns_R_free 911 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.954 _refine.correlation_coeff_Fo_to_Fc_free 0.939 _refine.B_iso_mean 21.308 _refine.aniso_B[1][1] 0.65 _refine.aniso_B[2][2] -0.09 _refine.aniso_B[3][3] -0.66 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.25 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.155 _refine.pdbx_overall_ESU_R_Free 0.143 _refine.overall_SU_ML 0.093 _refine.overall_SU_B 3.007 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1811 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 20 _refine_hist.number_atoms_solvent 142 _refine_hist.number_atoms_total 1973 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 43.03 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.023 0.021 ? 1875 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.924 1.944 ? 2528 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.934 5.000 ? 212 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.150 0.200 ? 252 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.011 0.020 ? 1443 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.198 0.200 ? 850 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.147 0.200 ? 131 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.193 0.200 ? 74 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.195 0.200 ? 19 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.244 1.500 ? 1069 'X-RAY DIFFRACTION' ? r_mcangle_it 2.028 2.000 ? 1730 'X-RAY DIFFRACTION' ? r_scbond_it 3.190 3.000 ? 806 'X-RAY DIFFRACTION' ? r_scangle_it 4.814 4.500 ? 798 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.800 _refine_ls_shell.d_res_low 1.847 _refine_ls_shell.number_reflns_R_work 1216 _refine_ls_shell.R_factor_R_work 0.291 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.363 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 59 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1R1Q _struct.title ;Structural Basis for Differential Recognition of Tyrosine Phosphorylated Sites in the Linker for Activation of T cells (LAT) by the Adaptor Protein Gads ; _struct.pdbx_descriptor 'GRB2-related adaptor protein 2, LAT pY191 peptide' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1R1Q _struct_keywords.pdbx_keywords 'PEPTIDE BINDING PROTEIN' _struct_keywords.text 'SH2, Gads, LAT, phosphopeptide, PEPTIDE BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 4 ? J N N 4 ? K N N 4 ? L N N 4 ? # loop_ _struct_biol.id _struct_biol.pdbx_parent_biol_id _struct_biol.details 1 ? ? 2 ? ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 17 ? GLY A 27 ? SER A 66 GLY A 76 1 ? 11 HELX_P HELX_P2 2 SER A 77 ? TYR A 85 ? SER A 126 TYR A 134 1 ? 9 HELX_P HELX_P3 3 SER B 2 ? PHE B 8 ? SER B 51 PHE B 57 1 ? 7 HELX_P HELX_P4 4 SER B 17 ? GLY B 27 ? SER B 66 GLY B 76 1 ? 11 HELX_P HELX_P5 5 SER B 77 ? TYR B 85 ? SER B 126 TYR B 134 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? C ACE 1 C ? ? ? 1_555 C ARG 2 N ? ? C ACE 555 C ARG 556 1_555 ? ? ? ? ? ? ? 1.363 ? covale2 covale ? ? D ACE 1 C ? ? ? 1_555 D ARG 2 N ? ? D ACE 555 D ARG 556 1_555 ? ? ? ? ? ? ? 1.325 ? covale3 covale ? ? C GLU 3 C ? ? ? 1_555 C PTR 4 N ? ? C GLU 557 C PTR 558 1_555 ? ? ? ? ? ? ? 1.328 ? covale4 covale ? ? C PTR 4 C ? ? ? 1_555 C VAL 5 N ? ? C PTR 558 C VAL 559 1_555 ? ? ? ? ? ? ? 1.331 ? covale5 covale ? ? D GLU 3 C ? ? ? 1_555 D PTR 4 N ? ? D GLU 557 D PTR 558 1_555 ? ? ? ? ? ? ? 1.340 ? covale6 covale ? ? D PTR 4 C ? ? ? 1_555 D VAL 5 N ? ? D PTR 558 D VAL 559 1_555 ? ? ? ? ? ? ? 1.343 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 2 ? C ? 3 ? D ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 33 ? ALA A 37 ? PHE A 82 ALA A 86 A 2 PHE A 45 ? ARG A 50 ? PHE A 94 ARG A 99 A 3 VAL A 55 ? LYS A 59 ? VAL A 104 LYS A 108 B 1 MET A 61 ? ARG A 62 ? MET A 110 ARG A 111 B 2 TYR A 68 ? PHE A 69 ? TYR A 117 PHE A 118 C 1 PHE B 33 ? ALA B 37 ? PHE B 82 ALA B 86 C 2 PHE B 45 ? ARG B 50 ? PHE B 94 ARG B 99 C 3 VAL B 55 ? LYS B 59 ? VAL B 104 LYS B 108 D 1 MET B 61 ? ARG B 62 ? MET B 110 ARG B 111 D 2 TYR B 68 ? PHE B 69 ? TYR B 117 PHE B 118 D 3 LYS B 74 ? PHE B 75 ? LYS B 123 PHE B 124 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ARG A 36 ? N ARG A 85 O SER A 46 ? O SER A 95 A 2 3 N VAL A 49 ? N VAL A 98 O GLN A 56 ? O GLN A 105 B 1 2 N MET A 61 ? N MET A 110 O PHE A 69 ? O PHE A 118 C 1 2 N ARG B 36 ? N ARG B 85 O SER B 46 ? O SER B 95 C 2 3 N ILE B 47 ? N ILE B 96 O PHE B 58 ? O PHE B 107 D 1 2 N MET B 61 ? N MET B 110 O PHE B 69 ? O PHE B 118 D 2 3 N TYR B 68 ? N TYR B 117 O PHE B 75 ? O PHE B 124 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE SO4 B 500' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE SO4 B 501' AC3 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE SO4 A 502' AC4 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE SO4 B 503' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 TRP B 71 ? TRP B 120 . ? 1_555 ? 2 AC1 8 THR B 72 ? THR B 121 . ? 1_555 ? 3 AC1 8 GLU B 73 ? GLU B 122 . ? 1_555 ? 4 AC1 8 TYR B 84 ? TYR B 133 . ? 1_555 ? 5 AC1 8 TYR B 85 ? TYR B 134 . ? 1_555 ? 6 AC1 8 LYS B 92 ? LYS B 141 . ? 1_555 ? 7 AC1 8 HOH J . ? HOH B 530 . ? 1_555 ? 8 AC1 8 ARG C 2 ? ARG C 556 . ? 1_555 ? 9 AC2 6 SER B 17 ? SER B 66 . ? 1_555 ? 10 AC2 6 ARG B 18 ? ARG B 67 . ? 1_555 ? 11 AC2 6 HIS B 19 ? HIS B 68 . ? 1_555 ? 12 AC2 6 HOH J . ? HOH B 519 . ? 1_555 ? 13 AC2 6 HOH J . ? HOH B 558 . ? 1_555 ? 14 AC2 6 ARG D 2 ? ARG D 556 . ? 1_555 ? 15 AC3 6 TRP A 71 ? TRP A 120 . ? 1_555 ? 16 AC3 6 THR A 72 ? THR A 121 . ? 1_555 ? 17 AC3 6 GLU A 73 ? GLU A 122 . ? 1_555 ? 18 AC3 6 TYR A 84 ? TYR A 133 . ? 1_555 ? 19 AC3 6 TYR A 85 ? TYR A 134 . ? 1_555 ? 20 AC3 6 LYS A 92 ? LYS A 141 . ? 1_555 ? 21 AC4 2 ASP B 63 ? ASP B 112 . ? 1_555 ? 22 AC4 2 THR B 64 ? THR B 113 . ? 1_555 ? # _database_PDB_matrix.entry_id 1R1Q _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1R1Q _atom_sites.fract_transf_matrix[1][1] 0.023414 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.004714 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019301 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023199 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 50 ? ? ? A . n A 1 2 SER 2 51 ? ? ? A . n A 1 3 PHE 3 52 ? ? ? A . n A 1 4 ILE 4 53 53 ILE ILE A . n A 1 5 ASP 5 54 54 ASP ASP A . n A 1 6 ILE 6 55 55 ILE ILE A . n A 1 7 GLU 7 56 56 GLU GLU A . n A 1 8 PHE 8 57 57 PHE PHE A . n A 1 9 PRO 9 58 58 PRO PRO A . n A 1 10 GLU 10 59 59 GLU GLU A . n A 1 11 TRP 11 60 60 TRP TRP A . n A 1 12 PHE 12 61 61 PHE PHE A . n A 1 13 HIS 13 62 62 HIS HIS A . n A 1 14 GLU 14 63 63 GLU GLU A . n A 1 15 GLY 15 64 64 GLY GLY A . n A 1 16 LEU 16 65 65 LEU LEU A . n A 1 17 SER 17 66 66 SER SER A . n A 1 18 ARG 18 67 67 ARG ARG A . n A 1 19 HIS 19 68 68 HIS HIS A . n A 1 20 GLN 20 69 69 GLN GLN A . n A 1 21 ALA 21 70 70 ALA ALA A . n A 1 22 GLU 22 71 71 GLU GLU A . n A 1 23 ASN 23 72 72 ASN ASN A . n A 1 24 LEU 24 73 73 LEU LEU A . n A 1 25 LEU 25 74 74 LEU LEU A . n A 1 26 MET 26 75 75 MET MET A . n A 1 27 GLY 27 76 76 GLY GLY A . n A 1 28 LYS 28 77 77 LYS LYS A . n A 1 29 ASP 29 78 78 ASP ASP A . n A 1 30 ILE 30 79 79 ILE ILE A . n A 1 31 GLY 31 80 80 GLY GLY A . n A 1 32 PHE 32 81 81 PHE PHE A . n A 1 33 PHE 33 82 82 PHE PHE A . n A 1 34 ILE 34 83 83 ILE ILE A . n A 1 35 ILE 35 84 84 ILE ILE A . n A 1 36 ARG 36 85 85 ARG ARG A . n A 1 37 ALA 37 86 86 ALA ALA A . n A 1 38 SER 38 87 87 SER SER A . n A 1 39 GLN 39 88 88 GLN GLN A . n A 1 40 SER 40 89 89 SER SER A . n A 1 41 SER 41 90 90 SER SER A . n A 1 42 PRO 42 91 91 PRO PRO A . n A 1 43 GLY 43 92 92 GLY GLY A . n A 1 44 ASP 44 93 93 ASP ASP A . n A 1 45 PHE 45 94 94 PHE PHE A . n A 1 46 SER 46 95 95 SER SER A . n A 1 47 ILE 47 96 96 ILE ILE A . n A 1 48 SER 48 97 97 SER SER A . n A 1 49 VAL 49 98 98 VAL VAL A . n A 1 50 ARG 50 99 99 ARG ARG A . n A 1 51 HIS 51 100 100 HIS HIS A . n A 1 52 GLU 52 101 101 GLU GLU A . n A 1 53 ASP 53 102 102 ASP ASP A . n A 1 54 ASP 54 103 103 ASP ASP A . n A 1 55 VAL 55 104 104 VAL VAL A . n A 1 56 GLN 56 105 105 GLN GLN A . n A 1 57 HIS 57 106 106 HIS HIS A . n A 1 58 PHE 58 107 107 PHE PHE A . n A 1 59 LYS 59 108 108 LYS LYS A . n A 1 60 VAL 60 109 109 VAL VAL A . n A 1 61 MET 61 110 110 MET MET A . n A 1 62 ARG 62 111 111 ARG ARG A . n A 1 63 ASP 63 112 112 ASP ASP A . n A 1 64 THR 64 113 113 THR THR A . n A 1 65 LYS 65 114 114 LYS LYS A . n A 1 66 GLY 66 115 115 GLY GLY A . n A 1 67 ASN 67 116 116 ASN ASN A . n A 1 68 TYR 68 117 117 TYR TYR A . n A 1 69 PHE 69 118 118 PHE PHE A . n A 1 70 LEU 70 119 119 LEU LEU A . n A 1 71 TRP 71 120 120 TRP TRP A . n A 1 72 THR 72 121 121 THR THR A . n A 1 73 GLU 73 122 122 GLU GLU A . n A 1 74 LYS 74 123 123 LYS LYS A . n A 1 75 PHE 75 124 124 PHE PHE A . n A 1 76 PRO 76 125 125 PRO PRO A . n A 1 77 SER 77 126 126 SER SER A . n A 1 78 LEU 78 127 127 LEU LEU A . n A 1 79 ASN 79 128 128 ASN ASN A . n A 1 80 LYS 80 129 129 LYS LYS A . n A 1 81 LEU 81 130 130 LEU LEU A . n A 1 82 VAL 82 131 131 VAL VAL A . n A 1 83 ASP 83 132 132 ASP ASP A . n A 1 84 TYR 84 133 133 TYR TYR A . n A 1 85 TYR 85 134 134 TYR TYR A . n A 1 86 ARG 86 135 135 ARG ARG A . n A 1 87 THR 87 136 136 THR THR A . n A 1 88 THR 88 137 137 THR THR A . n A 1 89 SER 89 138 138 SER SER A . n A 1 90 ILE 90 139 139 ILE ILE A . n A 1 91 SER 91 140 140 SER SER A . n A 1 92 LYS 92 141 141 LYS LYS A . n A 1 93 GLN 93 142 142 GLN GLN A . n A 1 94 LYS 94 143 143 LYS LYS A . n A 1 95 GLN 95 144 144 GLN GLN A . n A 1 96 VAL 96 145 145 VAL VAL A . n A 1 97 PHE 97 146 146 PHE PHE A . n A 1 98 LEU 98 147 147 LEU LEU A . n A 1 99 ARG 99 148 148 ARG ARG A . n A 1 100 ASP 100 149 149 ASP ASP A . n B 1 1 GLY 1 50 50 GLY GLY B . n B 1 2 SER 2 51 51 SER SER B . n B 1 3 PHE 3 52 52 PHE PHE B . n B 1 4 ILE 4 53 53 ILE ILE B . n B 1 5 ASP 5 54 54 ASP ASP B . n B 1 6 ILE 6 55 55 ILE ILE B . n B 1 7 GLU 7 56 56 GLU GLU B . n B 1 8 PHE 8 57 57 PHE PHE B . n B 1 9 PRO 9 58 58 PRO PRO B . n B 1 10 GLU 10 59 59 GLU GLU B . n B 1 11 TRP 11 60 60 TRP TRP B . n B 1 12 PHE 12 61 61 PHE PHE B . n B 1 13 HIS 13 62 62 HIS HIS B . n B 1 14 GLU 14 63 63 GLU GLU B . n B 1 15 GLY 15 64 64 GLY GLY B . n B 1 16 LEU 16 65 65 LEU LEU B . n B 1 17 SER 17 66 66 SER SER B . n B 1 18 ARG 18 67 67 ARG ARG B . n B 1 19 HIS 19 68 68 HIS HIS B . n B 1 20 GLN 20 69 69 GLN GLN B . n B 1 21 ALA 21 70 70 ALA ALA B . n B 1 22 GLU 22 71 71 GLU GLU B . n B 1 23 ASN 23 72 72 ASN ASN B . n B 1 24 LEU 24 73 73 LEU LEU B . n B 1 25 LEU 25 74 74 LEU LEU B . n B 1 26 MET 26 75 75 MET MET B . n B 1 27 GLY 27 76 76 GLY GLY B . n B 1 28 LYS 28 77 77 LYS LYS B . n B 1 29 ASP 29 78 78 ASP ASP B . n B 1 30 ILE 30 79 79 ILE ILE B . n B 1 31 GLY 31 80 80 GLY GLY B . n B 1 32 PHE 32 81 81 PHE PHE B . n B 1 33 PHE 33 82 82 PHE PHE B . n B 1 34 ILE 34 83 83 ILE ILE B . n B 1 35 ILE 35 84 84 ILE ILE B . n B 1 36 ARG 36 85 85 ARG ARG B . n B 1 37 ALA 37 86 86 ALA ALA B . n B 1 38 SER 38 87 87 SER SER B . n B 1 39 GLN 39 88 88 GLN GLN B . n B 1 40 SER 40 89 89 SER SER B . n B 1 41 SER 41 90 90 SER SER B . n B 1 42 PRO 42 91 91 PRO PRO B . n B 1 43 GLY 43 92 92 GLY GLY B . n B 1 44 ASP 44 93 93 ASP ASP B . n B 1 45 PHE 45 94 94 PHE PHE B . n B 1 46 SER 46 95 95 SER SER B . n B 1 47 ILE 47 96 96 ILE ILE B . n B 1 48 SER 48 97 97 SER SER B . n B 1 49 VAL 49 98 98 VAL VAL B . n B 1 50 ARG 50 99 99 ARG ARG B . n B 1 51 HIS 51 100 100 HIS HIS B . n B 1 52 GLU 52 101 101 GLU GLU B . n B 1 53 ASP 53 102 102 ASP ASP B . n B 1 54 ASP 54 103 103 ASP ASP B . n B 1 55 VAL 55 104 104 VAL VAL B . n B 1 56 GLN 56 105 105 GLN GLN B . n B 1 57 HIS 57 106 106 HIS HIS B . n B 1 58 PHE 58 107 107 PHE PHE B . n B 1 59 LYS 59 108 108 LYS LYS B . n B 1 60 VAL 60 109 109 VAL VAL B . n B 1 61 MET 61 110 110 MET MET B . n B 1 62 ARG 62 111 111 ARG ARG B . n B 1 63 ASP 63 112 112 ASP ASP B . n B 1 64 THR 64 113 113 THR THR B . n B 1 65 LYS 65 114 114 LYS LYS B . n B 1 66 GLY 66 115 115 GLY GLY B . n B 1 67 ASN 67 116 116 ASN ASN B . n B 1 68 TYR 68 117 117 TYR TYR B . n B 1 69 PHE 69 118 118 PHE PHE B . n B 1 70 LEU 70 119 119 LEU LEU B . n B 1 71 TRP 71 120 120 TRP TRP B . n B 1 72 THR 72 121 121 THR THR B . n B 1 73 GLU 73 122 122 GLU GLU B . n B 1 74 LYS 74 123 123 LYS LYS B . n B 1 75 PHE 75 124 124 PHE PHE B . n B 1 76 PRO 76 125 125 PRO PRO B . n B 1 77 SER 77 126 126 SER SER B . n B 1 78 LEU 78 127 127 LEU LEU B . n B 1 79 ASN 79 128 128 ASN ASN B . n B 1 80 LYS 80 129 129 LYS LYS B . n B 1 81 LEU 81 130 130 LEU LEU B . n B 1 82 VAL 82 131 131 VAL VAL B . n B 1 83 ASP 83 132 132 ASP ASP B . n B 1 84 TYR 84 133 133 TYR TYR B . n B 1 85 TYR 85 134 134 TYR TYR B . n B 1 86 ARG 86 135 135 ARG ARG B . n B 1 87 THR 87 136 136 THR THR B . n B 1 88 THR 88 137 137 THR THR B . n B 1 89 SER 89 138 138 SER SER B . n B 1 90 ILE 90 139 139 ILE ILE B . n B 1 91 SER 91 140 140 SER SER B . n B 1 92 LYS 92 141 141 LYS LYS B . n B 1 93 GLN 93 142 142 GLN GLN B . n B 1 94 LYS 94 143 143 LYS LYS B . n B 1 95 GLN 95 144 144 GLN GLN B . n B 1 96 VAL 96 145 145 VAL VAL B . n B 1 97 PHE 97 146 146 PHE PHE B . n B 1 98 LEU 98 147 147 LEU LEU B . n B 1 99 ARG 99 148 148 ARG ARG B . n B 1 100 ASP 100 149 149 ASP ASP B . n C 2 1 ACE 1 555 555 ACE ACE C . n C 2 2 ARG 2 556 556 ARG ARG C . n C 2 3 GLU 3 557 557 GLU GLU C . n C 2 4 PTR 4 558 558 PTR PTR C . n C 2 5 VAL 5 559 559 VAL VAL C . n C 2 6 ASN 6 560 560 ASN ASN C . n C 2 7 VAL 7 561 561 VAL VAL C . n D 2 1 ACE 1 555 655 ACE ACE D . n D 2 2 ARG 2 556 656 ARG ARG D . n D 2 3 GLU 3 557 657 GLU GLU D . n D 2 4 PTR 4 558 658 PTR PTR D . n D 2 5 VAL 5 559 659 VAL VAL D . n D 2 6 ASN 6 560 660 ASN ASN D . n D 2 7 VAL 7 561 661 VAL VAL D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 SO4 1 502 502 SO4 SO4 A . F 3 SO4 1 500 500 SO4 SO4 B . G 3 SO4 1 501 501 SO4 SO4 B . H 3 SO4 1 503 503 SO4 SO4 B . I 4 HOH 1 503 3 HOH HOH A . I 4 HOH 2 504 4 HOH HOH A . I 4 HOH 3 505 7 HOH HOH A . I 4 HOH 4 506 8 HOH HOH A . I 4 HOH 5 507 10 HOH HOH A . I 4 HOH 6 508 13 HOH HOH A . I 4 HOH 7 509 14 HOH HOH A . I 4 HOH 8 510 15 HOH HOH A . I 4 HOH 9 511 16 HOH HOH A . I 4 HOH 10 512 17 HOH HOH A . I 4 HOH 11 513 19 HOH HOH A . I 4 HOH 12 514 22 HOH HOH A . I 4 HOH 13 515 24 HOH HOH A . I 4 HOH 14 516 25 HOH HOH A . I 4 HOH 15 517 27 HOH HOH A . I 4 HOH 16 518 29 HOH HOH A . I 4 HOH 17 519 31 HOH HOH A . I 4 HOH 18 520 34 HOH HOH A . I 4 HOH 19 521 36 HOH HOH A . I 4 HOH 20 522 40 HOH HOH A . I 4 HOH 21 523 43 HOH HOH A . I 4 HOH 22 524 46 HOH HOH A . I 4 HOH 23 525 47 HOH HOH A . I 4 HOH 24 526 48 HOH HOH A . I 4 HOH 25 527 49 HOH HOH A . I 4 HOH 26 528 50 HOH HOH A . I 4 HOH 27 529 51 HOH HOH A . I 4 HOH 28 530 53 HOH HOH A . I 4 HOH 29 531 56 HOH HOH A . I 4 HOH 30 532 57 HOH HOH A . I 4 HOH 31 533 61 HOH HOH A . I 4 HOH 32 534 63 HOH HOH A . I 4 HOH 33 535 65 HOH HOH A . I 4 HOH 34 536 66 HOH HOH A . I 4 HOH 35 537 68 HOH HOH A . I 4 HOH 36 538 73 HOH HOH A . I 4 HOH 37 539 80 HOH HOH A . I 4 HOH 38 540 87 HOH HOH A . I 4 HOH 39 541 89 HOH HOH A . I 4 HOH 40 542 93 HOH HOH A . I 4 HOH 41 543 94 HOH HOH A . I 4 HOH 42 544 95 HOH HOH A . I 4 HOH 43 545 96 HOH HOH A . I 4 HOH 44 546 97 HOH HOH A . I 4 HOH 45 547 99 HOH HOH A . I 4 HOH 46 548 101 HOH HOH A . I 4 HOH 47 549 103 HOH HOH A . I 4 HOH 48 550 104 HOH HOH A . I 4 HOH 49 551 105 HOH HOH A . I 4 HOH 50 552 106 HOH HOH A . I 4 HOH 51 553 107 HOH HOH A . I 4 HOH 52 554 109 HOH HOH A . I 4 HOH 53 555 111 HOH HOH A . I 4 HOH 54 556 112 HOH HOH A . I 4 HOH 55 557 115 HOH HOH A . I 4 HOH 56 558 118 HOH HOH A . I 4 HOH 57 559 120 HOH HOH A . I 4 HOH 58 560 126 HOH HOH A . I 4 HOH 59 561 127 HOH HOH A . I 4 HOH 60 562 128 HOH HOH A . I 4 HOH 61 563 136 HOH HOH A . I 4 HOH 62 564 138 HOH HOH A . I 4 HOH 63 565 141 HOH HOH A . J 4 HOH 1 504 2 HOH HOH B . J 4 HOH 2 505 5 HOH HOH B . J 4 HOH 3 506 6 HOH HOH B . J 4 HOH 4 507 9 HOH HOH B . J 4 HOH 5 508 11 HOH HOH B . J 4 HOH 6 509 18 HOH HOH B . J 4 HOH 7 510 21 HOH HOH B . J 4 HOH 8 511 23 HOH HOH B . J 4 HOH 9 512 26 HOH HOH B . J 4 HOH 10 513 28 HOH HOH B . J 4 HOH 11 514 30 HOH HOH B . J 4 HOH 12 515 32 HOH HOH B . J 4 HOH 13 516 33 HOH HOH B . J 4 HOH 14 517 35 HOH HOH B . J 4 HOH 15 518 37 HOH HOH B . J 4 HOH 16 519 38 HOH HOH B . J 4 HOH 17 520 39 HOH HOH B . J 4 HOH 18 521 41 HOH HOH B . J 4 HOH 19 522 42 HOH HOH B . J 4 HOH 20 523 44 HOH HOH B . J 4 HOH 21 524 45 HOH HOH B . J 4 HOH 22 525 52 HOH HOH B . J 4 HOH 23 526 54 HOH HOH B . J 4 HOH 24 527 55 HOH HOH B . J 4 HOH 25 528 59 HOH HOH B . J 4 HOH 26 529 60 HOH HOH B . J 4 HOH 27 530 62 HOH HOH B . J 4 HOH 28 531 67 HOH HOH B . J 4 HOH 29 532 70 HOH HOH B . J 4 HOH 30 533 71 HOH HOH B . J 4 HOH 31 534 72 HOH HOH B . J 4 HOH 32 535 74 HOH HOH B . J 4 HOH 33 536 75 HOH HOH B . J 4 HOH 34 537 76 HOH HOH B . J 4 HOH 35 538 77 HOH HOH B . J 4 HOH 36 539 78 HOH HOH B . J 4 HOH 37 540 79 HOH HOH B . J 4 HOH 38 541 81 HOH HOH B . J 4 HOH 39 542 82 HOH HOH B . J 4 HOH 40 543 84 HOH HOH B . J 4 HOH 41 544 85 HOH HOH B . J 4 HOH 42 545 86 HOH HOH B . J 4 HOH 43 546 90 HOH HOH B . J 4 HOH 44 547 91 HOH HOH B . J 4 HOH 45 548 92 HOH HOH B . J 4 HOH 46 549 98 HOH HOH B . J 4 HOH 47 550 100 HOH HOH B . J 4 HOH 48 551 102 HOH HOH B . J 4 HOH 49 552 108 HOH HOH B . J 4 HOH 50 553 110 HOH HOH B . J 4 HOH 51 554 113 HOH HOH B . J 4 HOH 52 555 117 HOH HOH B . J 4 HOH 53 556 119 HOH HOH B . J 4 HOH 54 557 121 HOH HOH B . J 4 HOH 55 558 123 HOH HOH B . J 4 HOH 56 559 124 HOH HOH B . J 4 HOH 57 560 129 HOH HOH B . J 4 HOH 58 561 131 HOH HOH B . J 4 HOH 59 562 132 HOH HOH B . J 4 HOH 60 563 134 HOH HOH B . J 4 HOH 61 564 135 HOH HOH B . J 4 HOH 62 565 137 HOH HOH B . J 4 HOH 63 566 139 HOH HOH B . K 4 HOH 1 12 12 HOH HOH C . K 4 HOH 2 58 58 HOH HOH C . K 4 HOH 3 64 64 HOH HOH C . K 4 HOH 4 88 88 HOH HOH C . K 4 HOH 5 114 114 HOH HOH C . K 4 HOH 6 116 116 HOH HOH C . K 4 HOH 7 122 122 HOH HOH C . K 4 HOH 8 133 133 HOH HOH C . K 4 HOH 9 140 140 HOH HOH C . L 4 HOH 1 1 1 HOH HOH D . L 4 HOH 2 20 20 HOH HOH D . L 4 HOH 3 69 69 HOH HOH D . L 4 HOH 4 83 83 HOH HOH D . L 4 HOH 5 125 125 HOH HOH D . L 4 HOH 6 130 130 HOH HOH D . L 4 HOH 7 142 142 HOH HOH D . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 C PTR 4 C PTR 558 ? TYR O-PHOSPHOTYROSINE 2 D PTR 4 D PTR 558 ? TYR O-PHOSPHOTYROSINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 3 software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,E,I,K 2 1 B,D,F,G,H,J,L 3 1 B,D,F,G,H,J,L 3 2 A,C,E,I,K # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1470 ? 1 MORE -35 ? 1 'SSA (A^2)' 6360 ? 2 'ABSA (A^2)' 1440 ? 2 MORE -37 ? 2 'SSA (A^2)' 6460 ? 3 'ABSA (A^2)' 5070 ? 3 MORE -94 ? 3 'SSA (A^2)' 10660 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_656 -x+1,y+1/2,-z+1 -1.0000000000 0.0000000000 0.0000000000 34.0340528917 0.0000000000 1.0000000000 0.0000000000 25.9050000000 0.0000000000 0.0000000000 -1.0000000000 43.1055546511 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-09-28 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-04-04 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 4 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category diffrn_source # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 4 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_diffrn_source.type' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.1.24 ? 1 CrystalClear 'data reduction' '(MSC/RIGAKU)' ? 2 d*TREK 'data scaling' . ? 3 MOLREP phasing . ? 4 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CD _pdbx_validate_rmsd_bond.auth_asym_id_1 B _pdbx_validate_rmsd_bond.auth_comp_id_1 LYS _pdbx_validate_rmsd_bond.auth_seq_id_1 108 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CE _pdbx_validate_rmsd_bond.auth_asym_id_2 B _pdbx_validate_rmsd_bond.auth_comp_id_2 LYS _pdbx_validate_rmsd_bond.auth_seq_id_2 108 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.661 _pdbx_validate_rmsd_bond.bond_target_value 1.508 _pdbx_validate_rmsd_bond.bond_deviation 0.153 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.025 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE B ARG 67 ? ? CZ B ARG 67 ? ? NH1 B ARG 67 ? ? 123.78 120.30 3.48 0.50 N 2 1 NE B ARG 67 ? ? CZ B ARG 67 ? ? NH2 B ARG 67 ? ? 115.69 120.30 -4.61 0.50 N 3 1 CB B ASP 103 ? ? CG B ASP 103 ? ? OD2 B ASP 103 ? ? 129.26 118.30 10.96 0.90 N 4 1 CB B ASP 112 ? ? CG B ASP 112 ? ? OD2 B ASP 112 ? ? 126.01 118.30 7.71 0.90 N 5 1 CB B ASP 149 ? ? CG B ASP 149 ? ? OD2 B ASP 149 ? ? 124.67 118.30 6.37 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ILE A 55 ? ? 57.57 -78.18 2 1 TRP A 120 ? ? -130.47 -94.95 3 1 TRP B 120 ? ? -123.89 -96.58 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 50 ? A GLY 1 2 1 Y 1 A SER 51 ? A SER 2 3 1 Y 1 A PHE 52 ? A PHE 3 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'SULFATE ION' SO4 4 water HOH #