data_1RDG # _entry.id 1RDG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1RDG WWPDB D_1000176032 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1RDG _pdbx_database_status.recvd_initial_deposition_date 1988-03-17 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Frey, M.' 1 'Sieker, L.C.' 2 'Payan, F.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Rubredoxin from Desulfovibrio gigas. A molecular model of the oxidized form at 1.4 A resolution.' J.Mol.Biol. 197 525 541 1987 JMOBAK UK 0022-2836 0070 ? 3441010 '10.1016/0022-2836(87)90562-6' 1 'Some Comparisons between Two Crystallized Anaerobic Bacterial Rubredoxins from Desulfovibrio Gigas and D. Vulgaris' J.Mol.Biol. 107 179 ? 1976 JMOBAK UK 0022-2836 0070 ? ? ? 2 'The Amino Acid Sequence of Rubredoxin from the Sulfate Reducing Bacterium, Desulfovibrio Gigas' Biochem.Biophys.Res.Commun. 70 615 ? 1976 BBRCA9 US 0006-291X 0146 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Frey, M.' 1 primary 'Sieker, L.' 2 primary 'Payan, F.' 3 primary 'Haser, R.' 4 primary 'Bruschi, M.' 5 primary 'Pepe, G.' 6 primary 'LeGall, J.' 7 1 'Pierrot, M.' 8 1 'Haser, R.' 9 1 'Frey, M.' 10 1 'Bruschi, M.' 11 1 'Legall, J.' 12 1 'Sieker, L.C.' 13 1 'Jensen, L.H.' 14 2 'Bruschi, M.' 15 # _cell.entry_id 1RDG _cell.length_a 19.731 _cell.length_b 41.670 _cell.length_c 24.394 _cell.angle_alpha 90.00 _cell.angle_beta 109.40 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RDG _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man RUBREDOXIN 5682.304 1 ? ? ? ? 2 non-polymer syn 'FE (III) ION' 55.845 1 ? ? ? ? 3 non-polymer syn 'FORMYL GROUP' 30.026 1 ? ? ? ? 4 water nat water 18.015 117 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code MDIYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGASKDAFEKQ _entity_poly.pdbx_seq_one_letter_code_can MDIYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGASKDAFEKQ _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASP n 1 3 ILE n 1 4 TYR n 1 5 VAL n 1 6 CYS n 1 7 THR n 1 8 VAL n 1 9 CYS n 1 10 GLY n 1 11 TYR n 1 12 GLU n 1 13 TYR n 1 14 ASP n 1 15 PRO n 1 16 ALA n 1 17 LYS n 1 18 GLY n 1 19 ASP n 1 20 PRO n 1 21 ASP n 1 22 SER n 1 23 GLY n 1 24 ILE n 1 25 LYS n 1 26 PRO n 1 27 GLY n 1 28 THR n 1 29 LYS n 1 30 PHE n 1 31 GLU n 1 32 ASP n 1 33 LEU n 1 34 PRO n 1 35 ASP n 1 36 ASP n 1 37 TRP n 1 38 ALA n 1 39 CYS n 1 40 PRO n 1 41 VAL n 1 42 CYS n 1 43 GLY n 1 44 ALA n 1 45 SER n 1 46 LYS n 1 47 ASP n 1 48 ALA n 1 49 PHE n 1 50 GLU n 1 51 LYS n 1 52 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Desulfovibrio _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Desulfovibrio gigas' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 879 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RUBR_DESGI _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P00270 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code MDIYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGASKDAFEKQ _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1RDG _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 52 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P00270 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 52 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 52 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FE non-polymer . 'FE (III) ION' ? 'Fe 3' 55.845 FOR non-polymer . 'FORMYL GROUP' ? 'C H2 O' 30.026 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1RDG _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.66 _exptl_crystal.density_percent_sol 26.11 _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine.entry_id 1RDG _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 1.4 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1360000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 398 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 117 _refine_hist.number_atoms_total 516 _refine_hist.d_res_high 1.4 _refine_hist.d_res_low . # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function p_bond_d 0.015 0.020 ? ? 'X-RAY DIFFRACTION' ? p_angle_d 0.028 0.030 ? ? 'X-RAY DIFFRACTION' ? p_angle_deg ? ? ? ? 'X-RAY DIFFRACTION' ? p_planar_d ? ? ? ? 'X-RAY DIFFRACTION' ? p_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? p_mcbond_it 1.370 1.500 ? ? 'X-RAY DIFFRACTION' ? p_mcangle_it 2.030 2.000 ? ? 'X-RAY DIFFRACTION' ? p_scbond_it 2.400 2.000 ? ? 'X-RAY DIFFRACTION' ? p_scangle_it 3.700 3.000 ? ? 'X-RAY DIFFRACTION' ? p_plane_restr 0.008 0.020 ? ? 'X-RAY DIFFRACTION' ? p_chiral_restr 0.150 0.150 ? ? 'X-RAY DIFFRACTION' ? p_singtor_nbd 0.175 0.500 ? ? 'X-RAY DIFFRACTION' ? p_multtor_nbd 0.190 0.500 ? ? 'X-RAY DIFFRACTION' ? p_xhyhbond_nbd 0.250 0.500 ? ? 'X-RAY DIFFRACTION' ? p_xyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? p_planar_tor 4.6 3.0 ? ? 'X-RAY DIFFRACTION' ? p_staggered_tor 13.5 15.0 ? ? 'X-RAY DIFFRACTION' ? p_orthonormal_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_transverse_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_special_tor ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1RDG _struct.title 'RUBREDOXIN FROM DESULFOVIBRIO GIGAS. A MOLECULAR MODEL OF THE OXIDIZED FORM AT 1.4 ANGSTROMS RESOLUTION' _struct.pdbx_descriptor RUBREDOXIN _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1RDG _struct_keywords.pdbx_keywords 'ELECTRON TRANSFER(IRON-SULFUR PROTEIN)' _struct_keywords.text 'ELECTRON TRANSFER(IRON-SULFUR PROTEIN)' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 20 ? GLY A 23 ? PRO A 20 GLY A 23 5 ? 4 HELX_P HELX_P2 2 LYS A 29 ? LEU A 33 ? LYS A 29 LEU A 33 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? C FOR . C ? ? ? 1_555 A MET 1 N ? ? A FOR 0 A MET 1 1_555 ? ? ? ? ? ? ? 1.345 ? metalc1 metalc ? ? B FE . FE ? ? ? 1_555 A CYS 42 SG ? ? A FE 53 A CYS 42 1_555 ? ? ? ? ? ? ? 2.273 ? metalc2 metalc ? ? B FE . FE ? ? ? 1_555 A CYS 39 SG ? ? A FE 53 A CYS 39 1_555 ? ? ? ? ? ? ? 2.271 ? metalc3 metalc ? ? B FE . FE ? ? ? 1_555 A CYS 9 SG ? ? A FE 53 A CYS 9 1_555 ? ? ? ? ? ? ? 2.295 ? metalc4 metalc ? ? B FE . FE ? ? ? 1_555 A CYS 6 SG ? ? A FE 53 A CYS 6 1_555 ? ? ? ? ? ? ? 2.308 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 12 ? TYR A 13 ? GLU A 12 TYR A 13 A 2 TYR A 4 ? CYS A 6 ? TYR A 4 CYS A 6 A 3 PHE A 49 ? LYS A 51 ? PHE A 49 LYS A 51 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR A 13 ? N TYR A 13 O TYR A 4 ? O TYR A 4 A 2 3 N VAL A 5 ? N VAL A 5 O GLU A 50 ? O GLU A 50 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details FE Unknown ? ? ? ? 4 ? AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE FE A 53' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE FOR A 0' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 FE 4 CYS A 6 ? CYS A 6 . ? 1_555 ? 2 FE 4 CYS A 9 ? CYS A 9 . ? 1_555 ? 3 FE 4 CYS A 39 ? CYS A 39 . ? 1_555 ? 4 FE 4 CYS A 42 ? CYS A 42 . ? 1_555 ? 5 AC1 4 CYS A 6 ? CYS A 6 . ? 1_555 ? 6 AC1 4 CYS A 9 ? CYS A 9 . ? 1_555 ? 7 AC1 4 CYS A 39 ? CYS A 39 . ? 1_555 ? 8 AC1 4 CYS A 42 ? CYS A 42 . ? 1_555 ? 9 AC2 4 MET A 1 ? MET A 1 . ? 1_555 ? 10 AC2 4 ASP A 21 ? ASP A 21 . ? 1_454 ? 11 AC2 4 SER A 22 ? SER A 22 . ? 1_454 ? 12 AC2 4 HOH D . ? HOH A 111 . ? 1_555 ? # _database_PDB_matrix.entry_id 1RDG _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.352156 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.060195 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1RDG _atom_sites.fract_transf_matrix[1][1] 0.050682 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.017848 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023998 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.043461 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C FE N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 ASP 2 2 2 ASP ASP A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 TYR 4 4 4 TYR TYR A . n A 1 5 VAL 5 5 5 VAL VAL A . n A 1 6 CYS 6 6 6 CYS CYS A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 CYS 9 9 9 CYS CYS A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 TYR 11 11 11 TYR TYR A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 TYR 13 13 13 TYR TYR A . n A 1 14 ASP 14 14 14 ASP ASP A . n A 1 15 PRO 15 15 15 PRO PRO A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 GLY 18 18 18 GLY GLY A . n A 1 19 ASP 19 19 19 ASP ASP A . n A 1 20 PRO 20 20 20 PRO PRO A . n A 1 21 ASP 21 21 21 ASP ASP A . n A 1 22 SER 22 22 22 SER SER A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 ILE 24 24 24 ILE ILE A . n A 1 25 LYS 25 25 25 LYS LYS A . n A 1 26 PRO 26 26 26 PRO PRO A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 THR 28 28 28 THR THR A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 PHE 30 30 30 PHE PHE A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 ASP 32 32 32 ASP ASP A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 PRO 34 34 34 PRO PRO A . n A 1 35 ASP 35 35 35 ASP ASP A . n A 1 36 ASP 36 36 36 ASP ASP A . n A 1 37 TRP 37 37 37 TRP TRP A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 CYS 39 39 39 CYS CYS A . n A 1 40 PRO 40 40 40 PRO PRO A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 CYS 42 42 42 CYS CYS A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 SER 45 45 45 SER SER A . n A 1 46 LYS 46 46 46 LYS LYS A . n A 1 47 ASP 47 47 47 ASP ASP A . n A 1 48 ALA 48 48 48 ALA ALA A . n A 1 49 PHE 49 49 49 PHE PHE A . n A 1 50 GLU 50 50 50 GLU GLU A . n A 1 51 LYS 51 51 51 LYS LYS A . n A 1 52 GLN 52 52 52 GLN GLN A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE 1 53 53 FE FE A . C 3 FOR 1 0 0 FOR FOR A . D 4 HOH 1 54 1 HOH HOH A . D 4 HOH 2 55 2 HOH HOH A . D 4 HOH 3 56 3 HOH HOH A . D 4 HOH 4 57 4 HOH HOH A . D 4 HOH 5 58 5 HOH HOH A . D 4 HOH 6 59 6 HOH HOH A . D 4 HOH 7 60 7 HOH HOH A . D 4 HOH 8 61 8 HOH HOH A . D 4 HOH 9 62 9 HOH HOH A . D 4 HOH 10 63 10 HOH HOH A . D 4 HOH 11 64 11 HOH HOH A . D 4 HOH 12 65 12 HOH HOH A . D 4 HOH 13 66 13 HOH HOH A . D 4 HOH 14 67 14 HOH HOH A . D 4 HOH 15 68 15 HOH HOH A . D 4 HOH 16 69 16 HOH HOH A . D 4 HOH 17 70 17 HOH HOH A . D 4 HOH 18 71 18 HOH HOH A . D 4 HOH 19 72 19 HOH HOH A . D 4 HOH 20 73 20 HOH HOH A . D 4 HOH 21 74 21 HOH HOH A . D 4 HOH 22 75 22 HOH HOH A . D 4 HOH 23 76 23 HOH HOH A . D 4 HOH 24 77 24 HOH HOH A . D 4 HOH 25 78 25 HOH HOH A . D 4 HOH 26 79 26 HOH HOH A . D 4 HOH 27 80 27 HOH HOH A . D 4 HOH 28 81 28 HOH HOH A . D 4 HOH 29 82 29 HOH HOH A . D 4 HOH 30 83 30 HOH HOH A . D 4 HOH 31 84 31 HOH HOH A . D 4 HOH 32 85 32 HOH HOH A . D 4 HOH 33 86 33 HOH HOH A . D 4 HOH 34 87 34 HOH HOH A . D 4 HOH 35 88 35 HOH HOH A . D 4 HOH 36 89 36 HOH HOH A . D 4 HOH 37 90 37 HOH HOH A . D 4 HOH 38 91 38 HOH HOH A . D 4 HOH 39 92 39 HOH HOH A . D 4 HOH 40 93 40 HOH HOH A . D 4 HOH 41 94 41 HOH HOH A . D 4 HOH 42 95 42 HOH HOH A . D 4 HOH 43 96 43 HOH HOH A . D 4 HOH 44 97 44 HOH HOH A . D 4 HOH 45 98 45 HOH HOH A . D 4 HOH 46 99 46 HOH HOH A . D 4 HOH 47 100 47 HOH HOH A . D 4 HOH 48 101 48 HOH HOH A . D 4 HOH 49 102 49 HOH HOH A . D 4 HOH 50 103 50 HOH HOH A . D 4 HOH 51 104 51 HOH HOH A . D 4 HOH 52 105 52 HOH HOH A . D 4 HOH 53 106 53 HOH HOH A . D 4 HOH 54 107 54 HOH HOH A . D 4 HOH 55 108 55 HOH HOH A . D 4 HOH 56 109 56 HOH HOH A . D 4 HOH 57 110 57 HOH HOH A . D 4 HOH 58 111 58 HOH HOH A . D 4 HOH 59 112 60 HOH HOH A . D 4 HOH 60 113 61 HOH HOH A . D 4 HOH 61 114 62 HOH HOH A . D 4 HOH 62 115 63 HOH HOH A . D 4 HOH 63 116 64 HOH HOH A . D 4 HOH 64 117 65 HOH HOH A . D 4 HOH 65 118 66 HOH HOH A . D 4 HOH 66 119 67 HOH HOH A . D 4 HOH 67 120 68 HOH HOH A . D 4 HOH 68 121 69 HOH HOH A . D 4 HOH 69 122 70 HOH HOH A . D 4 HOH 70 123 71 HOH HOH A . D 4 HOH 71 124 72 HOH HOH A . D 4 HOH 72 125 73 HOH HOH A . D 4 HOH 73 126 74 HOH HOH A . D 4 HOH 74 127 75 HOH HOH A . D 4 HOH 75 128 76 HOH HOH A . D 4 HOH 76 129 77 HOH HOH A . D 4 HOH 77 130 78 HOH HOH A . D 4 HOH 78 131 79 HOH HOH A . D 4 HOH 79 132 80 HOH HOH A . D 4 HOH 80 133 81 HOH HOH A . D 4 HOH 81 134 82 HOH HOH A . D 4 HOH 82 135 83 HOH HOH A . D 4 HOH 83 136 84 HOH HOH A . D 4 HOH 84 137 85 HOH HOH A . D 4 HOH 85 138 87 HOH HOH A . D 4 HOH 86 139 88 HOH HOH A . D 4 HOH 87 140 89 HOH HOH A . D 4 HOH 88 141 90 HOH HOH A . D 4 HOH 89 142 91 HOH HOH A . D 4 HOH 90 143 93 HOH HOH A . D 4 HOH 91 144 94 HOH HOH A . D 4 HOH 92 145 95 HOH HOH A . D 4 HOH 93 146 96 HOH HOH A . D 4 HOH 94 147 97 HOH HOH A . D 4 HOH 95 148 98 HOH HOH A . D 4 HOH 96 149 99 HOH HOH A . D 4 HOH 97 150 100 HOH HOH A . D 4 HOH 98 151 101 HOH HOH A . D 4 HOH 99 152 102 HOH HOH A . D 4 HOH 100 153 103 HOH HOH A . D 4 HOH 101 154 104 HOH HOH A . D 4 HOH 102 155 105 HOH HOH A . D 4 HOH 103 156 106 HOH HOH A . D 4 HOH 104 157 107 HOH HOH A . D 4 HOH 105 158 108 HOH HOH A . D 4 HOH 106 159 109 HOH HOH A . D 4 HOH 107 160 110 HOH HOH A . D 4 HOH 108 161 111 HOH HOH A . D 4 HOH 109 162 112 HOH HOH A . D 4 HOH 110 163 113 HOH HOH A . D 4 HOH 111 164 114 HOH HOH A . D 4 HOH 112 165 115 HOH HOH A . D 4 HOH 113 166 116 HOH HOH A . D 4 HOH 114 167 118 HOH HOH A . D 4 HOH 115 168 119 HOH HOH A . D 4 HOH 116 169 120 HOH HOH A . D 4 HOH 117 170 121 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 42 ? A CYS 42 ? 1_555 FE ? B FE . ? A FE 53 ? 1_555 SG ? A CYS 39 ? A CYS 39 ? 1_555 111.9 ? 2 SG ? A CYS 42 ? A CYS 42 ? 1_555 FE ? B FE . ? A FE 53 ? 1_555 SG ? A CYS 9 ? A CYS 9 ? 1_555 109.5 ? 3 SG ? A CYS 39 ? A CYS 39 ? 1_555 FE ? B FE . ? A FE 53 ? 1_555 SG ? A CYS 9 ? A CYS 9 ? 1_555 103.4 ? 4 SG ? A CYS 42 ? A CYS 42 ? 1_555 FE ? B FE . ? A FE 53 ? 1_555 SG ? A CYS 6 ? A CYS 6 ? 1_555 106.1 ? 5 SG ? A CYS 39 ? A CYS 39 ? 1_555 FE ? B FE . ? A FE 53 ? 1_555 SG ? A CYS 6 ? A CYS 6 ? 1_555 111.4 ? 6 SG ? A CYS 9 ? A CYS 9 ? 1_555 FE ? B FE . ? A FE 53 ? 1_555 SG ? A CYS 6 ? A CYS 6 ? 1_555 114.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1989-04-19 2 'Structure model' 1 1 2008-03-03 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # _software.name PROLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 62 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 170 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.19 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 19 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -155.95 _pdbx_validate_torsion.psi 79.56 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'FE (III) ION' FE 3 'FORMYL GROUP' FOR 4 water HOH #