data_1RIO # _entry.id 1RIO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1RIO NDB PD0492 RCSB RCSB020776 WWPDB D_1000020776 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1KU7 'Crystal Structure Of Thermus Aquatics RNA Polymerase Sigmaa Subunit Region 4 Bound To-35 Element DNA' unspecified PDB 1LMB 'Refined 1.8 A crystal structure of the repressor-operator complex' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1RIO _pdbx_database_status.recvd_initial_deposition_date 2003-11-17 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Jain, D.' 1 'Nickels, B.E.' 2 'Sun, L.' 3 'Hochschild, A.' 4 'Darst, S.A.' 5 # _citation.id primary _citation.title 'Structure of a ternary transcription activation complex.' _citation.journal_abbrev Mol.Cell _citation.journal_volume 13 _citation.page_first 45 _citation.page_last 53 _citation.year 2004 _citation.journal_id_ASTM MOCEFL _citation.country US _citation.journal_id_ISSN 1097-2765 _citation.journal_id_CSD 2168 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 14731393 _citation.pdbx_database_id_DOI '10.1016/S1097-2765(03)00483-0' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Jain, D.' 1 primary 'Nickels, B.E.' 2 primary 'Sun, L.' 3 primary 'Hochschild, A.' 4 primary 'Darst, S.A.' 5 # _cell.entry_id 1RIO _cell.length_a 47.256 _cell.length_b 71.269 _cell.length_c 77.199 _cell.angle_alpha 90.00 _cell.angle_beta 91.34 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RIO _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 27-MER 8293.334 1 ? ? ? 'chemically synthesized' 2 polymer syn 27-MER 8302.348 1 ? ? ? 'chemically synthesized' 3 polymer man 'sigma factor SigA' 8719.089 1 ? ? 'Sigma region 4' ? 4 polymer man 'Repressor protein CI' 11150.298 2 ? ? 'cI-N-terminus domain' ? 5 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 6 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 1 ? ? ? ? 7 water nat water 18.015 176 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no ;(DC)(DG)(DG)(DT)(DA)(DT)(DC)(DA)(DC)(DC)(DG)(DC)(DC)(DA)(DG)(DT)(DG)(DC)(DT)(DT) (DG)(DA)(DC)(DA)(DT)(DG)(DG) ; CGGTATCACCGCCAGTGCTTGACATGG U ? 2 polydeoxyribonucleotide no no ;(DC)(DC)(DA)(DT)(DG)(DT)(DC)(DA)(DA)(DG)(DC)(DA)(DC)(DT)(DG)(DG)(DC)(DG)(DG)(DT) (DG)(DA)(DT)(DA)(DC)(DC)(DG) ; CCATGTCAAGCACTGGCGGTGATACCG T ? 3 'polypeptide(L)' no no SEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHESRTRKLRDFLE SEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHESRTRKLRDFLE H ? 4 'polypeptide(L)' no yes ;MSTKKKPLTQEQLEDARRLKAIYEKKKNELGLSQESVADK(MSE)G(MSE)GQSGVGALFNGINALNAYNAALLAKILKV SVEEFSPSIAREIYE(MSE)YEAVHHHHHH ; ;MSTKKKPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEFSPS IAREIYEMYEAVHHHHHH ; A,B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DG n 1 4 DT n 1 5 DA n 1 6 DT n 1 7 DC n 1 8 DA n 1 9 DC n 1 10 DC n 1 11 DG n 1 12 DC n 1 13 DC n 1 14 DA n 1 15 DG n 1 16 DT n 1 17 DG n 1 18 DC n 1 19 DT n 1 20 DT n 1 21 DG n 1 22 DA n 1 23 DC n 1 24 DA n 1 25 DT n 1 26 DG n 1 27 DG n 2 1 DC n 2 2 DC n 2 3 DA n 2 4 DT n 2 5 DG n 2 6 DT n 2 7 DC n 2 8 DA n 2 9 DA n 2 10 DG n 2 11 DC n 2 12 DA n 2 13 DC n 2 14 DT n 2 15 DG n 2 16 DG n 2 17 DC n 2 18 DG n 2 19 DG n 2 20 DT n 2 21 DG n 2 22 DA n 2 23 DT n 2 24 DA n 2 25 DC n 2 26 DC n 2 27 DG n 3 1 SER n 3 2 GLU n 3 3 GLU n 3 4 LEU n 3 5 GLU n 3 6 LYS n 3 7 ALA n 3 8 LEU n 3 9 SER n 3 10 LYS n 3 11 LEU n 3 12 SER n 3 13 GLU n 3 14 ARG n 3 15 GLU n 3 16 ALA n 3 17 MET n 3 18 VAL n 3 19 LEU n 3 20 LYS n 3 21 LEU n 3 22 ARG n 3 23 LYS n 3 24 GLY n 3 25 LEU n 3 26 ILE n 3 27 ASP n 3 28 GLY n 3 29 ARG n 3 30 GLU n 3 31 HIS n 3 32 THR n 3 33 LEU n 3 34 GLU n 3 35 GLU n 3 36 VAL n 3 37 GLY n 3 38 ALA n 3 39 TYR n 3 40 PHE n 3 41 GLY n 3 42 VAL n 3 43 THR n 3 44 ARG n 3 45 GLU n 3 46 ARG n 3 47 ILE n 3 48 ARG n 3 49 GLN n 3 50 ILE n 3 51 GLU n 3 52 ASN n 3 53 LYS n 3 54 ALA n 3 55 LEU n 3 56 ARG n 3 57 LYS n 3 58 LEU n 3 59 LYS n 3 60 TYR n 3 61 HIS n 3 62 GLU n 3 63 SER n 3 64 ARG n 3 65 THR n 3 66 ARG n 3 67 LYS n 3 68 LEU n 3 69 ARG n 3 70 ASP n 3 71 PHE n 3 72 LEU n 3 73 GLU n 4 1 MET n 4 2 SER n 4 3 THR n 4 4 LYS n 4 5 LYS n 4 6 LYS n 4 7 PRO n 4 8 LEU n 4 9 THR n 4 10 GLN n 4 11 GLU n 4 12 GLN n 4 13 LEU n 4 14 GLU n 4 15 ASP n 4 16 ALA n 4 17 ARG n 4 18 ARG n 4 19 LEU n 4 20 LYS n 4 21 ALA n 4 22 ILE n 4 23 TYR n 4 24 GLU n 4 25 LYS n 4 26 LYS n 4 27 LYS n 4 28 ASN n 4 29 GLU n 4 30 LEU n 4 31 GLY n 4 32 LEU n 4 33 SER n 4 34 GLN n 4 35 GLU n 4 36 SER n 4 37 VAL n 4 38 ALA n 4 39 ASP n 4 40 LYS n 4 41 MSE n 4 42 GLY n 4 43 MSE n 4 44 GLY n 4 45 GLN n 4 46 SER n 4 47 GLY n 4 48 VAL n 4 49 GLY n 4 50 ALA n 4 51 LEU n 4 52 PHE n 4 53 ASN n 4 54 GLY n 4 55 ILE n 4 56 ASN n 4 57 ALA n 4 58 LEU n 4 59 ASN n 4 60 ALA n 4 61 TYR n 4 62 ASN n 4 63 ALA n 4 64 ALA n 4 65 LEU n 4 66 LEU n 4 67 ALA n 4 68 LYS n 4 69 ILE n 4 70 LEU n 4 71 LYS n 4 72 VAL n 4 73 SER n 4 74 VAL n 4 75 GLU n 4 76 GLU n 4 77 PHE n 4 78 SER n 4 79 PRO n 4 80 SER n 4 81 ILE n 4 82 ALA n 4 83 ARG n 4 84 GLU n 4 85 ILE n 4 86 TYR n 4 87 GLU n 4 88 MSE n 4 89 TYR n 4 90 GLU n 4 91 ALA n 4 92 VAL n 4 93 HIS n 4 94 HIS n 4 95 HIS n 4 96 HIS n 4 97 HIS n 4 98 HIS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 3 1 sample ? ? ? ? Thermus ? ? ? ? ? ? ? 'Thermus aquaticus' 271 ? ? ? ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 Escherichia ? ? 'Escherichia coli' ? ? 'BL21(DE3)' ? ? ? ? ? ? ? Plasmid ? ? ? pAO6 ? ? 4 1 sample ? ? ? ? 'Lambda-like viruses' CI ? ? ? ? ? ? 'Enterobacteria phage lambda' 10710 ? ? ? ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 Escherichia ? ? 'Escherichia coli' ? ? 'BL21(DE3)' ? ? ? ? ? ? ? Plasmid ? ? ? pET21a ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code 1 UNP Q9EZJ8_THEAQ Q9EZJ8 3 366 ? ? 2 UNP RPC1_LAMBD P03034 4 1 ? ? 3 PDB 1RIO 1RIO 1 ? ? ? 4 PDB 1RIO 1RIO 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1RIO H 1 ? 73 ? Q9EZJ8 366 ? 438 ? 366 438 2 2 1RIO A 1 ? 92 ? P03034 1 ? 91 ? 1 92 3 2 1RIO B 1 ? 92 ? P03034 1 ? 91 ? 1 92 4 3 1RIO U 1 ? 27 ? 1RIO 1 ? 27 ? 1 27 5 4 1RIO T 1 ? 27 ? 1RIO 1 ? 27 ? 1 27 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 2 1RIO MSE A 41 ? UNP P03034 MET 40 'MODIFIED RESIDUE' 41 1 2 1RIO MSE A 43 ? UNP P03034 MET 42 'MODIFIED RESIDUE' 43 2 2 1RIO MSE A 88 ? UNP P03034 MET 87 'MODIFIED RESIDUE' 88 3 2 1RIO HIS A 93 ? UNP P03034 ? ? 'EXPRESSION TAG' 93 4 2 1RIO HIS A 94 ? UNP P03034 ? ? 'EXPRESSION TAG' 94 5 2 1RIO HIS A 95 ? UNP P03034 ? ? 'EXPRESSION TAG' 95 6 2 1RIO HIS A 96 ? UNP P03034 ? ? 'EXPRESSION TAG' 96 7 2 1RIO HIS A 97 ? UNP P03034 ? ? 'EXPRESSION TAG' 97 8 2 1RIO HIS A 98 ? UNP P03034 ? ? 'EXPRESSION TAG' 98 9 3 1RIO MSE B 41 ? UNP P03034 MET 40 'MODIFIED RESIDUE' 41 10 3 1RIO MSE B 43 ? UNP P03034 MET 42 'MODIFIED RESIDUE' 43 11 3 1RIO MSE B 88 ? UNP P03034 MET 87 'MODIFIED RESIDUE' 88 12 3 1RIO HIS B 93 ? UNP P03034 ? ? 'EXPRESSION TAG' 93 13 3 1RIO HIS B 94 ? UNP P03034 ? ? 'EXPRESSION TAG' 94 14 3 1RIO HIS B 95 ? UNP P03034 ? ? 'EXPRESSION TAG' 95 15 3 1RIO HIS B 96 ? UNP P03034 ? ? 'EXPRESSION TAG' 96 16 3 1RIO HIS B 97 ? UNP P03034 ? ? 'EXPRESSION TAG' 97 17 3 1RIO HIS B 98 ? UNP P03034 ? ? 'EXPRESSION TAG' 98 18 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1RIO _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.69 _exptl_crystal.density_percent_sol 54.28 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.60 _exptl_crystal_grow.pdbx_details 'MPD, Sodium Acetate, calcium chloride, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 295K, pH 4.60' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MPD ? ? ? 1 2 1 'Sodium Acetate' ? ? ? 1 3 1 'calcium chloride' ? ? ? 1 4 1 H2O ? ? ? 1 5 2 'Sodium Acetate' ? ? ? 1 6 2 'calcium chloride' ? ? ? 1 7 2 H2O ? ? ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2002-10-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI 111' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97946 1.0 2 0.97938 1.0 3 0.97927 1.0 4 0.9648 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X9A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X9A _diffrn_source.pdbx_wavelength 0.97946 _diffrn_source.pdbx_wavelength_list 0.97938,0.97927,0.9648 # _reflns.entry_id 1RIO _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2.25 _reflns.d_resolution_low 30 _reflns.number_all ? _reflns.number_obs 22889 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 1RIO _refine.ls_number_reflns_obs 21761 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.00 _refine.ls_d_res_high 2.30 _refine.ls_percent_reflns_obs 100.0 _refine.ls_R_factor_obs 0.218 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.216 _refine.ls_R_factor_R_free 0.254 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.800 _refine.ls_number_reflns_R_free 1095 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.941 _refine.correlation_coeff_Fo_to_Fc_free 0.924 _refine.B_iso_mean 27.38 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.310 _refine.pdbx_overall_ESU_R_Free 0.231 _refine.overall_SU_ML 0.217 _refine.overall_SU_B 8.884 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2000 _refine_hist.pdbx_number_atoms_nucleic_acid 1101 _refine_hist.pdbx_number_atoms_ligand 9 _refine_hist.number_atoms_solvent 176 _refine_hist.number_atoms_total 3286 _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 30.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.020 0.021 ? 3256 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 2386 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.353 2.394 ? 4605 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.143 3.000 ? 5664 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.745 3.000 ? 248 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 17.587 15.000 ? 402 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.126 0.200 ? 458 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.020 ? 2774 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.002 0.020 ? 387 'X-RAY DIFFRACTION' ? r_nbd_refined 0.258 0.300 ? 753 'X-RAY DIFFRACTION' ? r_nbd_other 0.250 0.300 ? 2579 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.209 0.500 ? 191 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other 0.062 0.500 ? 9 'X-RAY DIFFRACTION' ? r_metal_ion_refined 0.224 0.500 ? 1 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.281 0.300 ? 14 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.254 0.300 ? 26 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.063 0.500 ? 2 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.002 1.500 ? 1243 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.875 2.000 ? 1969 'X-RAY DIFFRACTION' ? r_scbond_it 2.481 3.000 ? 2013 'X-RAY DIFFRACTION' ? r_scangle_it 3.585 4.500 ? 2636 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.30 _refine_ls_shell.d_res_low 2.36 _refine_ls_shell.number_reflns_R_work 1605 _refine_ls_shell.R_factor_R_work 0.26 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.312 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 82 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 1RIO _struct.title 'Structure of bacteriophage lambda cI-NTD in complex with sigma-region4 of Thermus aquaticus bound to DNA' _struct.pdbx_descriptor 'sigma factor SigA/Repressor protein CI/DNA Complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1RIO _struct_keywords.pdbx_keywords transcription/DNA _struct_keywords.text 'HELIX-TURN-HELIX, TRANSCRIPTION ACTIVATION, transcription-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? G N N 6 ? H N N 7 ? I N N 7 ? J N N 7 ? K N N 7 ? L N N 7 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER C 1 ? LYS C 6 ? SER H 366 LYS H 371 1 ? 6 HELX_P HELX_P2 2 SER C 12 ? LYS C 23 ? SER H 377 LYS H 388 1 ? 12 HELX_P HELX_P3 3 THR C 32 ? GLY C 41 ? THR H 397 GLY H 406 1 ? 10 HELX_P HELX_P4 4 THR C 43 ? LYS C 59 ? THR H 408 LYS H 424 1 ? 17 HELX_P HELX_P5 5 THR D 9 ? GLY D 31 ? THR A 9 GLY A 31 1 ? 23 HELX_P HELX_P6 6 SER D 33 ? GLY D 42 ? SER A 33 GLY A 42 1 ? 10 HELX_P HELX_P7 7 GLY D 44 ? ASN D 53 ? GLY A 44 ASN A 53 1 ? 10 HELX_P HELX_P8 8 ASN D 59 ? LYS D 71 ? ASN A 59 LYS A 71 1 ? 13 HELX_P HELX_P9 9 SER D 73 ? PHE D 77 ? SER A 73 PHE A 77 5 ? 5 HELX_P HELX_P10 10 SER D 78 ? HIS D 94 ? SER A 78 HIS A 94 1 ? 17 HELX_P HELX_P11 11 THR E 9 ? GLY E 31 ? THR B 9 GLY B 31 1 ? 23 HELX_P HELX_P12 12 SER E 33 ? MSE E 41 ? SER B 33 MSE B 41 1 ? 9 HELX_P HELX_P13 13 GLY E 44 ? ASN E 53 ? GLY B 44 ASN B 53 1 ? 10 HELX_P HELX_P14 14 ASN E 59 ? LYS E 71 ? ASN B 59 LYS B 71 1 ? 13 HELX_P HELX_P15 15 SER E 73 ? PHE E 77 ? SER B 73 PHE B 77 5 ? 5 HELX_P HELX_P16 16 SER E 78 ? ALA E 91 ? SER B 78 ALA B 91 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? D LYS 40 C ? ? ? 1_555 D MSE 41 N ? ? A LYS 40 A MSE 41 1_555 ? ? ? ? ? ? ? 1.337 ? covale2 covale ? ? D MSE 41 C ? ? ? 1_555 D GLY 42 N ? ? A MSE 41 A GLY 42 1_555 ? ? ? ? ? ? ? 1.327 ? covale3 covale ? ? D GLY 42 C ? ? ? 1_555 D MSE 43 N ? ? A GLY 42 A MSE 43 1_555 ? ? ? ? ? ? ? 1.327 ? covale4 covale ? ? D MSE 43 C ? ? ? 1_555 D GLY 44 N ? ? A MSE 43 A GLY 44 1_555 ? ? ? ? ? ? ? 1.322 ? covale5 covale ? ? D GLU 87 C ? ? ? 1_555 D MSE 88 N ? ? A GLU 87 A MSE 88 1_555 ? ? ? ? ? ? ? 1.309 ? covale6 covale ? ? D MSE 88 C ? ? ? 1_555 D TYR 89 N ? ? A MSE 88 A TYR 89 1_555 ? ? ? ? ? ? ? 1.333 ? metalc1 metalc ? ? F CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 301 A HOH 306 1_555 ? ? ? ? ? ? ? 2.888 ? metalc2 metalc ? ? F CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 301 A HOH 311 1_555 ? ? ? ? ? ? ? 3.391 ? metalc3 metalc ? ? F CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 301 T HOH 44 1_555 ? ? ? ? ? ? ? 2.565 ? metalc4 metalc ? ? F CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 301 T HOH 45 1_555 ? ? ? ? ? ? ? 2.789 ? metalc5 metalc ? ? F CA . CA ? ? ? 1_555 D GLY 42 O ? ? A CA 301 A GLY 42 1_555 ? ? ? ? ? ? ? 2.196 ? covale7 covale ? ? E LYS 40 C ? ? ? 1_555 E MSE 41 N ? ? B LYS 40 B MSE 41 1_555 ? ? ? ? ? ? ? 1.325 ? covale8 covale ? ? E MSE 41 C ? ? ? 1_555 E GLY 42 N ? ? B MSE 41 B GLY 42 1_555 ? ? ? ? ? ? ? 1.309 ? covale9 covale ? ? E GLY 42 C ? ? ? 1_555 E MSE 43 N ? ? B GLY 42 B MSE 43 1_555 ? ? ? ? ? ? ? 1.325 ? covale10 covale ? ? E MSE 43 C ? ? ? 1_555 E GLY 44 N ? ? B MSE 43 B GLY 44 1_555 ? ? ? ? ? ? ? 1.330 ? covale11 covale ? ? E GLU 87 C ? ? ? 1_555 E MSE 88 N ? ? B GLU 87 B MSE 88 1_555 ? ? ? ? ? ? ? 1.310 ? covale12 covale ? ? E MSE 88 C ? ? ? 1_555 E TYR 89 N ? ? B MSE 88 B TYR 89 1_555 ? ? ? ? ? ? ? 1.333 ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 27 N1 ? ? U DC 1 T DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 27 O6 ? ? U DC 1 T DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 27 N2 ? ? U DC 1 T DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 26 N3 ? ? U DG 2 T DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 26 O2 ? ? U DG 2 T DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 26 N4 ? ? U DG 2 T DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 25 N3 ? ? U DG 3 T DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 25 O2 ? ? U DG 3 T DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 25 N4 ? ? U DG 3 T DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 24 N1 ? ? U DT 4 T DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 24 N6 ? ? U DT 4 T DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 23 N3 ? ? U DA 5 T DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 23 O4 ? ? U DA 5 T DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 22 N1 ? ? U DT 6 T DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 22 N6 ? ? U DT 6 T DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 21 N1 ? ? U DC 7 T DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 21 O6 ? ? U DC 7 T DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 21 N2 ? ? U DC 7 T DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 20 N3 ? ? U DA 8 T DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 20 O4 ? ? U DA 8 T DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 19 N1 ? ? U DC 9 T DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 19 O6 ? ? U DC 9 T DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 19 N2 ? ? U DC 9 T DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 18 N1 ? ? U DC 10 T DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 18 O6 ? ? U DC 10 T DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 18 N2 ? ? U DC 10 T DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DC 17 N3 ? ? U DG 11 T DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DC 17 O2 ? ? U DG 11 T DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? A DG 11 O6 ? ? ? 1_555 B DC 17 N4 ? ? U DG 11 T DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? A DC 12 N3 ? ? ? 1_555 B DG 16 N1 ? ? U DC 12 T DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? A DC 12 N4 ? ? ? 1_555 B DG 16 O6 ? ? U DC 12 T DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? A DC 12 O2 ? ? ? 1_555 B DG 16 N2 ? ? U DC 12 T DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog33 hydrog ? ? A DC 13 N3 ? ? ? 1_555 B DG 15 N1 ? ? U DC 13 T DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog34 hydrog ? ? A DC 13 N4 ? ? ? 1_555 B DG 15 O6 ? ? U DC 13 T DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog35 hydrog ? ? A DC 13 O2 ? ? ? 1_555 B DG 15 N2 ? ? U DC 13 T DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog36 hydrog ? ? A DA 14 N1 ? ? ? 1_555 B DT 14 N3 ? ? U DA 14 T DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog37 hydrog ? ? A DA 14 N6 ? ? ? 1_555 B DT 14 O4 ? ? U DA 14 T DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog38 hydrog ? ? A DG 15 N1 ? ? ? 1_555 B DC 13 N3 ? ? U DG 15 T DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog39 hydrog ? ? A DG 15 N2 ? ? ? 1_555 B DC 13 O2 ? ? U DG 15 T DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog40 hydrog ? ? A DG 15 O6 ? ? ? 1_555 B DC 13 N4 ? ? U DG 15 T DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog41 hydrog ? ? A DT 16 N3 ? ? ? 1_555 B DA 12 N1 ? ? U DT 16 T DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog42 hydrog ? ? A DT 16 O4 ? ? ? 1_555 B DA 12 N6 ? ? U DT 16 T DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog43 hydrog ? ? A DG 17 N1 ? ? ? 1_555 B DC 11 N3 ? ? U DG 17 T DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog44 hydrog ? ? A DG 17 N2 ? ? ? 1_555 B DC 11 O2 ? ? U DG 17 T DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog45 hydrog ? ? A DG 17 O6 ? ? ? 1_555 B DC 11 N4 ? ? U DG 17 T DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog46 hydrog ? ? A DC 18 N3 ? ? ? 1_555 B DG 10 N1 ? ? U DC 18 T DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog47 hydrog ? ? A DC 18 N4 ? ? ? 1_555 B DG 10 O6 ? ? U DC 18 T DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog48 hydrog ? ? A DC 18 O2 ? ? ? 1_555 B DG 10 N2 ? ? U DC 18 T DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog49 hydrog ? ? A DT 19 N3 ? ? ? 1_555 B DA 9 N1 ? ? U DT 19 T DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog50 hydrog ? ? A DT 19 O4 ? ? ? 1_555 B DA 9 N6 ? ? U DT 19 T DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog51 hydrog ? ? A DT 20 N3 ? ? ? 1_555 B DA 8 N1 ? ? U DT 20 T DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog52 hydrog ? ? A DT 20 O4 ? ? ? 1_555 B DA 8 N6 ? ? U DT 20 T DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog53 hydrog ? ? A DG 21 N1 ? ? ? 1_555 B DC 7 N3 ? ? U DG 21 T DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog54 hydrog ? ? A DG 21 N2 ? ? ? 1_555 B DC 7 O2 ? ? U DG 21 T DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog55 hydrog ? ? A DG 21 O6 ? ? ? 1_555 B DC 7 N4 ? ? U DG 21 T DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog56 hydrog ? ? A DA 22 N1 ? ? ? 1_555 B DT 6 N3 ? ? U DA 22 T DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog57 hydrog ? ? A DA 22 N6 ? ? ? 1_555 B DT 6 O4 ? ? U DA 22 T DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog58 hydrog ? ? A DC 23 N3 ? ? ? 1_555 B DG 5 N1 ? ? U DC 23 T DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog59 hydrog ? ? A DC 23 N4 ? ? ? 1_555 B DG 5 O6 ? ? U DC 23 T DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog60 hydrog ? ? A DC 23 O2 ? ? ? 1_555 B DG 5 N2 ? ? U DC 23 T DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog61 hydrog ? ? A DA 24 N1 ? ? ? 1_555 B DT 4 N3 ? ? U DA 24 T DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog62 hydrog ? ? A DA 24 N6 ? ? ? 1_555 B DT 4 O4 ? ? U DA 24 T DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog63 hydrog ? ? A DT 25 N3 ? ? ? 1_555 B DA 3 N1 ? ? U DT 25 T DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog64 hydrog ? ? A DT 25 O4 ? ? ? 1_555 B DA 3 N6 ? ? U DT 25 T DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog65 hydrog ? ? A DG 26 N1 ? ? ? 1_555 B DC 2 N3 ? ? U DG 26 T DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog66 hydrog ? ? A DG 26 N2 ? ? ? 1_555 B DC 2 O2 ? ? U DG 26 T DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog67 hydrog ? ? A DG 26 O6 ? ? ? 1_555 B DC 2 N4 ? ? U DG 26 T DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog68 hydrog ? ? A DG 27 N1 ? ? ? 1_555 B DC 1 N3 ? ? U DG 27 T DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog69 hydrog ? ? A DG 27 N2 ? ? ? 1_555 B DC 1 O2 ? ? U DG 27 T DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog70 hydrog ? ? A DG 27 O6 ? ? ? 1_555 B DC 1 N4 ? ? U DG 27 T DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE CA A 301' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE MPD A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 GLY D 42 ? GLY A 42 . ? 1_555 ? 2 AC1 4 HOH K . ? HOH A 306 . ? 1_555 ? 3 AC1 4 HOH I . ? HOH T 44 . ? 1_555 ? 4 AC1 4 HOH I . ? HOH T 45 . ? 1_555 ? 5 AC2 3 GLU D 75 ? GLU A 75 . ? 1_555 ? 6 AC2 3 ALA D 82 ? ALA A 82 . ? 1_555 ? 7 AC2 3 HOH K . ? HOH A 326 . ? 1_555 ? # _database_PDB_matrix.entry_id 1RIO _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1RIO _atom_sites.fract_transf_matrix[1][1] 0.021161 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000495 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014031 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012957 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C U . n A 1 2 DG 2 2 2 DG G U . n A 1 3 DG 3 3 3 DG G U . n A 1 4 DT 4 4 4 DT T U . n A 1 5 DA 5 5 5 DA A U . n A 1 6 DT 6 6 6 DT T U . n A 1 7 DC 7 7 7 DC C U . n A 1 8 DA 8 8 8 DA A U . n A 1 9 DC 9 9 9 DC C U . n A 1 10 DC 10 10 10 DC C U . n A 1 11 DG 11 11 11 DG G U . n A 1 12 DC 12 12 12 DC C U . n A 1 13 DC 13 13 13 DC C U . n A 1 14 DA 14 14 14 DA A U . n A 1 15 DG 15 15 15 DG G U . n A 1 16 DT 16 16 16 DT T U . n A 1 17 DG 17 17 17 DG G U . n A 1 18 DC 18 18 18 DC C U . n A 1 19 DT 19 19 19 DT T U . n A 1 20 DT 20 20 20 DT T U . n A 1 21 DG 21 21 21 DG G U . n A 1 22 DA 22 22 22 DA A U . n A 1 23 DC 23 23 23 DC C U . n A 1 24 DA 24 24 24 DA A U . n A 1 25 DT 25 25 25 DT T U . n A 1 26 DG 26 26 26 DG G U . n A 1 27 DG 27 27 27 DG G U . n B 2 1 DC 1 1 1 DC C T . n B 2 2 DC 2 2 2 DC C T . n B 2 3 DA 3 3 3 DA A T . n B 2 4 DT 4 4 4 DT T T . n B 2 5 DG 5 5 5 DG G T . n B 2 6 DT 6 6 6 DT T T . n B 2 7 DC 7 7 7 DC C T . n B 2 8 DA 8 8 8 DA A T . n B 2 9 DA 9 9 9 DA A T . n B 2 10 DG 10 10 10 DG G T . n B 2 11 DC 11 11 11 DC C T . n B 2 12 DA 12 12 12 DA A T . n B 2 13 DC 13 13 13 DC C T . n B 2 14 DT 14 14 14 DT T T . n B 2 15 DG 15 15 15 DG G T . n B 2 16 DG 16 16 16 DG G T . n B 2 17 DC 17 17 17 DC C T . n B 2 18 DG 18 18 18 DG G T . n B 2 19 DG 19 19 19 DG G T . n B 2 20 DT 20 20 20 DT T T . n B 2 21 DG 21 21 21 DG G T . n B 2 22 DA 22 22 22 DA A T . n B 2 23 DT 23 23 23 DT T T . n B 2 24 DA 24 24 24 DA A T . n B 2 25 DC 25 25 25 DC C T . n B 2 26 DC 26 26 26 DC C T . n B 2 27 DG 27 27 27 DG G T . n C 3 1 SER 1 366 366 SER SER H . n C 3 2 GLU 2 367 367 GLU GLU H . n C 3 3 GLU 3 368 368 GLU GLU H . n C 3 4 LEU 4 369 369 LEU LEU H . n C 3 5 GLU 5 370 370 GLU GLU H . n C 3 6 LYS 6 371 371 LYS LYS H . n C 3 7 ALA 7 372 372 ALA ALA H . n C 3 8 LEU 8 373 373 LEU LEU H . n C 3 9 SER 9 374 374 SER SER H . n C 3 10 LYS 10 375 375 LYS LYS H . n C 3 11 LEU 11 376 376 LEU LEU H . n C 3 12 SER 12 377 377 SER SER H . n C 3 13 GLU 13 378 378 GLU GLU H . n C 3 14 ARG 14 379 379 ARG ARG H . n C 3 15 GLU 15 380 380 GLU GLU H . n C 3 16 ALA 16 381 381 ALA ALA H . n C 3 17 MET 17 382 382 MET MET H . n C 3 18 VAL 18 383 383 VAL VAL H . n C 3 19 LEU 19 384 384 LEU LEU H . n C 3 20 LYS 20 385 385 LYS LYS H . n C 3 21 LEU 21 386 386 LEU LEU H . n C 3 22 ARG 22 387 387 ARG ARG H . n C 3 23 LYS 23 388 388 LYS LYS H . n C 3 24 GLY 24 389 389 GLY GLY H . n C 3 25 LEU 25 390 390 LEU LEU H . n C 3 26 ILE 26 391 391 ILE ILE H . n C 3 27 ASP 27 392 392 ASP ASP H . n C 3 28 GLY 28 393 393 GLY GLY H . n C 3 29 ARG 29 394 394 ARG ARG H . n C 3 30 GLU 30 395 395 GLU GLU H . n C 3 31 HIS 31 396 396 HIS HIS H . n C 3 32 THR 32 397 397 THR THR H . n C 3 33 LEU 33 398 398 LEU LEU H . n C 3 34 GLU 34 399 399 GLU GLU H . n C 3 35 GLU 35 400 400 GLU GLU H . n C 3 36 VAL 36 401 401 VAL VAL H . n C 3 37 GLY 37 402 402 GLY GLY H . n C 3 38 ALA 38 403 403 ALA ALA H . n C 3 39 TYR 39 404 404 TYR TYR H . n C 3 40 PHE 40 405 405 PHE PHE H . n C 3 41 GLY 41 406 406 GLY GLY H . n C 3 42 VAL 42 407 407 VAL VAL H . n C 3 43 THR 43 408 408 THR THR H . n C 3 44 ARG 44 409 409 ARG ARG H . n C 3 45 GLU 45 410 410 GLU GLU H . n C 3 46 ARG 46 411 411 ARG ARG H . n C 3 47 ILE 47 412 412 ILE ILE H . n C 3 48 ARG 48 413 413 ARG ARG H . n C 3 49 GLN 49 414 414 GLN GLN H . n C 3 50 ILE 50 415 415 ILE ILE H . n C 3 51 GLU 51 416 416 GLU GLU H . n C 3 52 ASN 52 417 417 ASN ASN H . n C 3 53 LYS 53 418 418 LYS LYS H . n C 3 54 ALA 54 419 419 ALA ALA H . n C 3 55 LEU 55 420 420 LEU LEU H . n C 3 56 ARG 56 421 421 ARG ARG H . n C 3 57 LYS 57 422 422 LYS LYS H . n C 3 58 LEU 58 423 423 LEU LEU H . n C 3 59 LYS 59 424 424 LYS LYS H . n C 3 60 TYR 60 425 425 TYR TYR H . n C 3 61 HIS 61 426 426 HIS HIS H . n C 3 62 GLU 62 427 ? ? ? H . n C 3 63 SER 63 428 ? ? ? H . n C 3 64 ARG 64 429 ? ? ? H . n C 3 65 THR 65 430 ? ? ? H . n C 3 66 ARG 66 431 ? ? ? H . n C 3 67 LYS 67 432 ? ? ? H . n C 3 68 LEU 68 433 ? ? ? H . n C 3 69 ARG 69 434 ? ? ? H . n C 3 70 ASP 70 435 ? ? ? H . n C 3 71 PHE 71 436 ? ? ? H . n C 3 72 LEU 72 437 ? ? ? H . n C 3 73 GLU 73 438 ? ? ? H . n D 4 1 MET 1 1 ? ? ? A . n D 4 2 SER 2 2 2 SER SER A . n D 4 3 THR 3 3 3 THR THR A . n D 4 4 LYS 4 4 4 LYS LYS A . n D 4 5 LYS 5 5 5 LYS LYS A . n D 4 6 LYS 6 6 6 LYS LYS A . n D 4 7 PRO 7 7 7 PRO PRO A . n D 4 8 LEU 8 8 8 LEU LEU A . n D 4 9 THR 9 9 9 THR THR A . n D 4 10 GLN 10 10 10 GLN GLN A . n D 4 11 GLU 11 11 11 GLU GLU A . n D 4 12 GLN 12 12 12 GLN GLN A . n D 4 13 LEU 13 13 13 LEU LEU A . n D 4 14 GLU 14 14 14 GLU GLU A . n D 4 15 ASP 15 15 15 ASP ASP A . n D 4 16 ALA 16 16 16 ALA ALA A . n D 4 17 ARG 17 17 17 ARG ARG A . n D 4 18 ARG 18 18 18 ARG ARG A . n D 4 19 LEU 19 19 19 LEU LEU A . n D 4 20 LYS 20 20 20 LYS LYS A . n D 4 21 ALA 21 21 21 ALA ALA A . n D 4 22 ILE 22 22 22 ILE ILE A . n D 4 23 TYR 23 23 23 TYR TYR A . n D 4 24 GLU 24 24 24 GLU GLU A . n D 4 25 LYS 25 25 25 LYS LYS A . n D 4 26 LYS 26 26 26 LYS LYS A . n D 4 27 LYS 27 27 27 LYS LYS A . n D 4 28 ASN 28 28 28 ASN ASN A . n D 4 29 GLU 29 29 29 GLU GLU A . n D 4 30 LEU 30 30 30 LEU LEU A . n D 4 31 GLY 31 31 31 GLY GLY A . n D 4 32 LEU 32 32 32 LEU LEU A . n D 4 33 SER 33 33 33 SER SER A . n D 4 34 GLN 34 34 34 GLN GLN A . n D 4 35 GLU 35 35 35 GLU GLU A . n D 4 36 SER 36 36 36 SER SER A . n D 4 37 VAL 37 37 37 VAL VAL A . n D 4 38 ALA 38 38 38 ALA ALA A . n D 4 39 ASP 39 39 39 ASP ASP A . n D 4 40 LYS 40 40 40 LYS LYS A . n D 4 41 MSE 41 41 41 MSE MSE A . n D 4 42 GLY 42 42 42 GLY GLY A . n D 4 43 MSE 43 43 43 MSE MSE A . n D 4 44 GLY 44 44 44 GLY GLY A . n D 4 45 GLN 45 45 45 GLN GLN A . n D 4 46 SER 46 46 46 SER SER A . n D 4 47 GLY 47 47 47 GLY GLY A . n D 4 48 VAL 48 48 48 VAL VAL A . n D 4 49 GLY 49 49 49 GLY GLY A . n D 4 50 ALA 50 50 50 ALA ALA A . n D 4 51 LEU 51 51 51 LEU LEU A . n D 4 52 PHE 52 52 52 PHE PHE A . n D 4 53 ASN 53 53 53 ASN ASN A . n D 4 54 GLY 54 54 54 GLY GLY A . n D 4 55 ILE 55 55 55 ILE ILE A . n D 4 56 ASN 56 56 56 ASN ASN A . n D 4 57 ALA 57 57 57 ALA ALA A . n D 4 58 LEU 58 58 58 LEU LEU A . n D 4 59 ASN 59 59 59 ASN ASN A . n D 4 60 ALA 60 60 60 ALA ALA A . n D 4 61 TYR 61 61 61 TYR TYR A . n D 4 62 ASN 62 62 62 ASN ASN A . n D 4 63 ALA 63 63 63 ALA ALA A . n D 4 64 ALA 64 64 64 ALA ALA A . n D 4 65 LEU 65 65 65 LEU LEU A . n D 4 66 LEU 66 66 66 LEU LEU A . n D 4 67 ALA 67 67 67 ALA ALA A . n D 4 68 LYS 68 68 68 LYS LYS A . n D 4 69 ILE 69 69 69 ILE ILE A . n D 4 70 LEU 70 70 70 LEU LEU A . n D 4 71 LYS 71 71 71 LYS LYS A . n D 4 72 VAL 72 72 72 VAL VAL A . n D 4 73 SER 73 73 73 SER SER A . n D 4 74 VAL 74 74 74 VAL VAL A . n D 4 75 GLU 75 75 75 GLU GLU A . n D 4 76 GLU 76 76 76 GLU GLU A . n D 4 77 PHE 77 77 77 PHE PHE A . n D 4 78 SER 78 78 78 SER SER A . n D 4 79 PRO 79 79 79 PRO PRO A . n D 4 80 SER 80 80 80 SER SER A . n D 4 81 ILE 81 81 81 ILE ILE A . n D 4 82 ALA 82 82 82 ALA ALA A . n D 4 83 ARG 83 83 83 ARG ARG A . n D 4 84 GLU 84 84 84 GLU GLU A . n D 4 85 ILE 85 85 85 ILE ILE A . n D 4 86 TYR 86 86 86 TYR TYR A . n D 4 87 GLU 87 87 87 GLU GLU A . n D 4 88 MSE 88 88 88 MSE MSE A . n D 4 89 TYR 89 89 89 TYR TYR A . n D 4 90 GLU 90 90 90 GLU GLU A . n D 4 91 ALA 91 91 91 ALA ALA A . n D 4 92 VAL 92 92 92 VAL VAL A . n D 4 93 HIS 93 93 93 HIS HIS A . n D 4 94 HIS 94 94 94 HIS HIS A . n D 4 95 HIS 95 95 95 HIS HIS A . n D 4 96 HIS 96 96 96 HIS HIS A . n D 4 97 HIS 97 97 97 HIS HIS A . n D 4 98 HIS 98 98 98 HIS HIS A . n E 4 1 MET 1 1 ? ? ? B . n E 4 2 SER 2 2 2 SER SER B . n E 4 3 THR 3 3 3 THR THR B . n E 4 4 LYS 4 4 4 LYS LYS B . n E 4 5 LYS 5 5 5 LYS LYS B . n E 4 6 LYS 6 6 6 LYS LYS B . n E 4 7 PRO 7 7 7 PRO PRO B . n E 4 8 LEU 8 8 8 LEU LEU B . n E 4 9 THR 9 9 9 THR THR B . n E 4 10 GLN 10 10 10 GLN GLN B . n E 4 11 GLU 11 11 11 GLU GLU B . n E 4 12 GLN 12 12 12 GLN GLN B . n E 4 13 LEU 13 13 13 LEU LEU B . n E 4 14 GLU 14 14 14 GLU GLU B . n E 4 15 ASP 15 15 15 ASP ASP B . n E 4 16 ALA 16 16 16 ALA ALA B . n E 4 17 ARG 17 17 17 ARG ARG B . n E 4 18 ARG 18 18 18 ARG ARG B . n E 4 19 LEU 19 19 19 LEU LEU B . n E 4 20 LYS 20 20 20 LYS LYS B . n E 4 21 ALA 21 21 21 ALA ALA B . n E 4 22 ILE 22 22 22 ILE ILE B . n E 4 23 TYR 23 23 23 TYR TYR B . n E 4 24 GLU 24 24 24 GLU GLU B . n E 4 25 LYS 25 25 25 LYS LYS B . n E 4 26 LYS 26 26 26 LYS LYS B . n E 4 27 LYS 27 27 27 LYS LYS B . n E 4 28 ASN 28 28 28 ASN ASN B . n E 4 29 GLU 29 29 29 GLU GLU B . n E 4 30 LEU 30 30 30 LEU LEU B . n E 4 31 GLY 31 31 31 GLY GLY B . n E 4 32 LEU 32 32 32 LEU LEU B . n E 4 33 SER 33 33 33 SER SER B . n E 4 34 GLN 34 34 34 GLN GLN B . n E 4 35 GLU 35 35 35 GLU GLU B . n E 4 36 SER 36 36 36 SER SER B . n E 4 37 VAL 37 37 37 VAL VAL B . n E 4 38 ALA 38 38 38 ALA ALA B . n E 4 39 ASP 39 39 39 ASP ASP B . n E 4 40 LYS 40 40 40 LYS LYS B . n E 4 41 MSE 41 41 41 MSE MSE B . n E 4 42 GLY 42 42 42 GLY GLY B . n E 4 43 MSE 43 43 43 MSE MSE B . n E 4 44 GLY 44 44 44 GLY GLY B . n E 4 45 GLN 45 45 45 GLN GLN B . n E 4 46 SER 46 46 46 SER SER B . n E 4 47 GLY 47 47 47 GLY GLY B . n E 4 48 VAL 48 48 48 VAL VAL B . n E 4 49 GLY 49 49 49 GLY GLY B . n E 4 50 ALA 50 50 50 ALA ALA B . n E 4 51 LEU 51 51 51 LEU LEU B . n E 4 52 PHE 52 52 52 PHE PHE B . n E 4 53 ASN 53 53 53 ASN ASN B . n E 4 54 GLY 54 54 54 GLY GLY B . n E 4 55 ILE 55 55 55 ILE ILE B . n E 4 56 ASN 56 56 56 ASN ASN B . n E 4 57 ALA 57 57 57 ALA ALA B . n E 4 58 LEU 58 58 58 LEU LEU B . n E 4 59 ASN 59 59 59 ASN ASN B . n E 4 60 ALA 60 60 60 ALA ALA B . n E 4 61 TYR 61 61 61 TYR TYR B . n E 4 62 ASN 62 62 62 ASN ASN B . n E 4 63 ALA 63 63 63 ALA ALA B . n E 4 64 ALA 64 64 64 ALA ALA B . n E 4 65 LEU 65 65 65 LEU LEU B . n E 4 66 LEU 66 66 66 LEU LEU B . n E 4 67 ALA 67 67 67 ALA ALA B . n E 4 68 LYS 68 68 68 LYS LYS B . n E 4 69 ILE 69 69 69 ILE ILE B . n E 4 70 LEU 70 70 70 LEU LEU B . n E 4 71 LYS 71 71 71 LYS LYS B . n E 4 72 VAL 72 72 72 VAL VAL B . n E 4 73 SER 73 73 73 SER SER B . n E 4 74 VAL 74 74 74 VAL VAL B . n E 4 75 GLU 75 75 75 GLU GLU B . n E 4 76 GLU 76 76 76 GLU GLU B . n E 4 77 PHE 77 77 77 PHE PHE B . n E 4 78 SER 78 78 78 SER SER B . n E 4 79 PRO 79 79 79 PRO PRO B . n E 4 80 SER 80 80 80 SER SER B . n E 4 81 ILE 81 81 81 ILE ILE B . n E 4 82 ALA 82 82 82 ALA ALA B . n E 4 83 ARG 83 83 83 ARG ARG B . n E 4 84 GLU 84 84 84 GLU GLU B . n E 4 85 ILE 85 85 85 ILE ILE B . n E 4 86 TYR 86 86 86 TYR TYR B . n E 4 87 GLU 87 87 87 GLU GLU B . n E 4 88 MSE 88 88 88 MSE MSE B . n E 4 89 TYR 89 89 89 TYR TYR B . n E 4 90 GLU 90 90 90 GLU GLU B . n E 4 91 ALA 91 91 91 ALA ALA B . n E 4 92 VAL 92 92 92 VAL VAL B . n E 4 93 HIS 93 93 93 HIS HIS B . n E 4 94 HIS 94 94 94 HIS HIS B . n E 4 95 HIS 95 95 95 HIS HIS B . n E 4 96 HIS 96 96 96 HIS HIS B . n E 4 97 HIS 97 97 97 HIS HIS B . n E 4 98 HIS 98 98 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 CA 1 301 301 CA CA A . G 6 MPD 1 201 201 MPD MPD A . H 7 HOH 1 28 2 HOH HOH U . H 7 HOH 2 29 5 HOH HOH U . H 7 HOH 3 30 6 HOH HOH U . H 7 HOH 4 31 11 HOH HOH U . H 7 HOH 5 32 14 HOH HOH U . H 7 HOH 6 33 21 HOH HOH U . H 7 HOH 7 34 31 HOH HOH U . H 7 HOH 8 35 35 HOH HOH U . H 7 HOH 9 36 37 HOH HOH U . H 7 HOH 10 37 39 HOH HOH U . H 7 HOH 11 38 42 HOH HOH U . H 7 HOH 12 39 57 HOH HOH U . H 7 HOH 13 40 74 HOH HOH U . H 7 HOH 14 41 76 HOH HOH U . H 7 HOH 15 42 79 HOH HOH U . H 7 HOH 16 43 81 HOH HOH U . H 7 HOH 17 44 90 HOH HOH U . H 7 HOH 18 45 96 HOH HOH U . H 7 HOH 19 46 99 HOH HOH U . H 7 HOH 20 47 101 HOH HOH U . H 7 HOH 21 48 104 HOH HOH U . H 7 HOH 22 49 105 HOH HOH U . H 7 HOH 23 50 107 HOH HOH U . H 7 HOH 24 51 111 HOH HOH U . H 7 HOH 25 52 117 HOH HOH U . H 7 HOH 26 53 124 HOH HOH U . H 7 HOH 27 54 127 HOH HOH U . H 7 HOH 28 55 134 HOH HOH U . H 7 HOH 29 56 145 HOH HOH U . H 7 HOH 30 57 156 HOH HOH U . H 7 HOH 31 58 157 HOH HOH U . H 7 HOH 32 59 160 HOH HOH U . H 7 HOH 33 60 169 HOH HOH U . H 7 HOH 34 61 179 HOH HOH U . H 7 HOH 35 62 180 HOH HOH U . H 7 HOH 36 63 190 HOH HOH U . I 7 HOH 1 28 1 HOH HOH T . I 7 HOH 2 29 3 HOH HOH T . I 7 HOH 3 30 9 HOH HOH T . I 7 HOH 4 31 10 HOH HOH T . I 7 HOH 5 32 15 HOH HOH T . I 7 HOH 6 33 23 HOH HOH T . I 7 HOH 7 34 29 HOH HOH T . I 7 HOH 8 35 33 HOH HOH T . I 7 HOH 9 36 40 HOH HOH T . I 7 HOH 10 37 46 HOH HOH T . I 7 HOH 11 38 55 HOH HOH T . I 7 HOH 12 39 61 HOH HOH T . I 7 HOH 13 40 66 HOH HOH T . I 7 HOH 14 41 67 HOH HOH T . I 7 HOH 15 42 71 HOH HOH T . I 7 HOH 16 43 75 HOH HOH T . I 7 HOH 17 44 78 HOH HOH T . I 7 HOH 18 45 82 HOH HOH T . I 7 HOH 19 46 97 HOH HOH T . I 7 HOH 20 47 102 HOH HOH T . I 7 HOH 21 48 109 HOH HOH T . I 7 HOH 22 49 110 HOH HOH T . I 7 HOH 23 50 116 HOH HOH T . I 7 HOH 24 51 129 HOH HOH T . I 7 HOH 25 52 140 HOH HOH T . I 7 HOH 26 53 141 HOH HOH T . I 7 HOH 27 54 154 HOH HOH T . I 7 HOH 28 55 158 HOH HOH T . I 7 HOH 29 56 164 HOH HOH T . I 7 HOH 30 57 167 HOH HOH T . I 7 HOH 31 58 168 HOH HOH T . I 7 HOH 32 59 171 HOH HOH T . J 7 HOH 1 13 13 HOH HOH H . J 7 HOH 2 30 30 HOH HOH H . J 7 HOH 3 54 54 HOH HOH H . J 7 HOH 4 60 60 HOH HOH H . J 7 HOH 5 64 64 HOH HOH H . J 7 HOH 6 68 68 HOH HOH H . J 7 HOH 7 100 100 HOH HOH H . J 7 HOH 8 106 106 HOH HOH H . J 7 HOH 9 114 114 HOH HOH H . J 7 HOH 10 130 130 HOH HOH H . J 7 HOH 11 133 133 HOH HOH H . J 7 HOH 12 135 135 HOH HOH H . J 7 HOH 13 142 142 HOH HOH H . J 7 HOH 14 166 166 HOH HOH H . J 7 HOH 15 181 181 HOH HOH H . K 7 HOH 1 302 7 HOH HOH A . K 7 HOH 2 303 16 HOH HOH A . K 7 HOH 3 304 17 HOH HOH A . K 7 HOH 4 305 18 HOH HOH A . K 7 HOH 5 306 19 HOH HOH A . K 7 HOH 6 307 22 HOH HOH A . K 7 HOH 7 308 24 HOH HOH A . K 7 HOH 8 309 25 HOH HOH A . K 7 HOH 9 310 32 HOH HOH A . K 7 HOH 10 311 34 HOH HOH A . K 7 HOH 11 312 36 HOH HOH A . K 7 HOH 12 313 38 HOH HOH A . K 7 HOH 13 314 43 HOH HOH A . K 7 HOH 14 315 47 HOH HOH A . K 7 HOH 15 316 50 HOH HOH A . K 7 HOH 16 317 53 HOH HOH A . K 7 HOH 17 318 56 HOH HOH A . K 7 HOH 18 319 58 HOH HOH A . K 7 HOH 19 320 69 HOH HOH A . K 7 HOH 20 321 73 HOH HOH A . K 7 HOH 21 322 80 HOH HOH A . K 7 HOH 22 323 87 HOH HOH A . K 7 HOH 23 324 89 HOH HOH A . K 7 HOH 24 325 94 HOH HOH A . K 7 HOH 25 326 112 HOH HOH A . K 7 HOH 26 327 122 HOH HOH A . K 7 HOH 27 328 123 HOH HOH A . K 7 HOH 28 329 126 HOH HOH A . K 7 HOH 29 330 137 HOH HOH A . K 7 HOH 30 331 139 HOH HOH A . K 7 HOH 31 332 143 HOH HOH A . K 7 HOH 32 333 144 HOH HOH A . K 7 HOH 33 334 149 HOH HOH A . K 7 HOH 34 335 150 HOH HOH A . K 7 HOH 35 336 152 HOH HOH A . K 7 HOH 36 337 155 HOH HOH A . K 7 HOH 37 338 159 HOH HOH A . K 7 HOH 38 339 162 HOH HOH A . K 7 HOH 39 340 163 HOH HOH A . K 7 HOH 40 341 170 HOH HOH A . K 7 HOH 41 342 172 HOH HOH A . K 7 HOH 42 343 173 HOH HOH A . K 7 HOH 43 344 178 HOH HOH A . K 7 HOH 44 345 183 HOH HOH A . K 7 HOH 45 346 184 HOH HOH A . K 7 HOH 46 347 187 HOH HOH A . K 7 HOH 47 348 189 HOH HOH A . K 7 HOH 48 349 191 HOH HOH A . K 7 HOH 49 350 193 HOH HOH A . L 7 HOH 1 99 4 HOH HOH B . L 7 HOH 2 100 8 HOH HOH B . L 7 HOH 3 101 12 HOH HOH B . L 7 HOH 4 102 20 HOH HOH B . L 7 HOH 5 103 27 HOH HOH B . L 7 HOH 6 104 28 HOH HOH B . L 7 HOH 7 105 41 HOH HOH B . L 7 HOH 8 106 44 HOH HOH B . L 7 HOH 9 107 45 HOH HOH B . L 7 HOH 10 108 48 HOH HOH B . L 7 HOH 11 109 49 HOH HOH B . L 7 HOH 12 110 51 HOH HOH B . L 7 HOH 13 111 52 HOH HOH B . L 7 HOH 14 112 59 HOH HOH B . L 7 HOH 15 113 62 HOH HOH B . L 7 HOH 16 114 63 HOH HOH B . L 7 HOH 17 115 70 HOH HOH B . L 7 HOH 18 116 72 HOH HOH B . L 7 HOH 19 117 77 HOH HOH B . L 7 HOH 20 118 83 HOH HOH B . L 7 HOH 21 119 85 HOH HOH B . L 7 HOH 22 120 86 HOH HOH B . L 7 HOH 23 121 91 HOH HOH B . L 7 HOH 24 122 93 HOH HOH B . L 7 HOH 25 123 95 HOH HOH B . L 7 HOH 26 124 98 HOH HOH B . L 7 HOH 27 125 103 HOH HOH B . L 7 HOH 28 126 113 HOH HOH B . L 7 HOH 29 127 115 HOH HOH B . L 7 HOH 30 128 119 HOH HOH B . L 7 HOH 31 129 120 HOH HOH B . L 7 HOH 32 130 125 HOH HOH B . L 7 HOH 33 131 131 HOH HOH B . L 7 HOH 34 132 132 HOH HOH B . L 7 HOH 35 133 136 HOH HOH B . L 7 HOH 36 134 146 HOH HOH B . L 7 HOH 37 135 147 HOH HOH B . L 7 HOH 38 136 153 HOH HOH B . L 7 HOH 39 137 161 HOH HOH B . L 7 HOH 40 138 174 HOH HOH B . L 7 HOH 41 139 176 HOH HOH B . L 7 HOH 42 140 177 HOH HOH B . L 7 HOH 43 141 185 HOH HOH B . L 7 HOH 44 142 192 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 D MSE 41 A MSE 41 ? MET SELENOMETHIONINE 2 D MSE 43 A MSE 43 ? MET SELENOMETHIONINE 3 D MSE 88 A MSE 88 ? MET SELENOMETHIONINE 4 E MSE 41 B MSE 41 ? MET SELENOMETHIONINE 5 E MSE 43 B MSE 43 ? MET SELENOMETHIONINE 6 E MSE 88 B MSE 88 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? K HOH . ? A HOH 306 ? 1_555 CA ? F CA . ? A CA 301 ? 1_555 O ? K HOH . ? A HOH 311 ? 1_555 116.8 ? 2 O ? K HOH . ? A HOH 306 ? 1_555 CA ? F CA . ? A CA 301 ? 1_555 O ? I HOH . ? T HOH 44 ? 1_555 142.2 ? 3 O ? K HOH . ? A HOH 311 ? 1_555 CA ? F CA . ? A CA 301 ? 1_555 O ? I HOH . ? T HOH 44 ? 1_555 50.7 ? 4 O ? K HOH . ? A HOH 306 ? 1_555 CA ? F CA . ? A CA 301 ? 1_555 O ? I HOH . ? T HOH 45 ? 1_555 68.2 ? 5 O ? K HOH . ? A HOH 311 ? 1_555 CA ? F CA . ? A CA 301 ? 1_555 O ? I HOH . ? T HOH 45 ? 1_555 100.5 ? 6 O ? I HOH . ? T HOH 44 ? 1_555 CA ? F CA . ? A CA 301 ? 1_555 O ? I HOH . ? T HOH 45 ? 1_555 79.0 ? 7 O ? K HOH . ? A HOH 306 ? 1_555 CA ? F CA . ? A CA 301 ? 1_555 O ? D GLY 42 ? A GLY 42 ? 1_555 63.2 ? 8 O ? K HOH . ? A HOH 311 ? 1_555 CA ? F CA . ? A CA 301 ? 1_555 O ? D GLY 42 ? A GLY 42 ? 1_555 53.6 ? 9 O ? I HOH . ? T HOH 44 ? 1_555 CA ? F CA . ? A CA 301 ? 1_555 O ? D GLY 42 ? A GLY 42 ? 1_555 94.0 ? 10 O ? I HOH . ? T HOH 45 ? 1_555 CA ? F CA . ? A CA 301 ? 1_555 O ? D GLY 42 ? A GLY 42 ? 1_555 80.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-01-27 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Version format compliance' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 9.2370 3.5190 49.3970 0.3294 0.0569 0.1890 -0.0975 -0.1132 0.0383 2.8087 2.2748 5.5721 1.0799 -2.9196 -1.6821 0.1547 0.0688 0.1900 0.5090 -0.2417 -0.0109 -0.6450 0.0434 0.0869 'X-RAY DIFFRACTION' 2 ? refined 13.0170 12.8500 24.9360 0.0643 0.0864 0.2095 -0.0640 0.0240 0.0439 1.5328 2.7038 2.5977 -0.0885 0.5964 -1.0360 -0.0827 0.0909 -0.0096 0.2496 -0.1785 -0.5632 -0.0900 0.2171 0.2612 'X-RAY DIFFRACTION' 3 ? refined -8.9170 1.3420 1.9560 0.3130 0.3487 0.1690 -0.2330 -0.0278 -0.0554 3.9934 3.1282 7.9750 -1.4193 3.7875 -2.4403 0.2120 0.4873 -0.6712 -0.6234 0.3412 0.5680 0.7405 -0.7041 -0.5533 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 B 1 1 B 10 10 ? T T 'X-RAY DIFFRACTION' ? 2 1 A 18 18 A 27 27 ? U U 'X-RAY DIFFRACTION' ? 3 1 C 1 366 C 61 426 ? H H 'X-RAY DIFFRACTION' ? 4 2 B 11 11 B 16 16 ? T T 'X-RAY DIFFRACTION' ? 5 2 A 12 12 A 17 17 ? U U 'X-RAY DIFFRACTION' ? 6 2 E 2 2 E 96 96 ? B B 'X-RAY DIFFRACTION' ? 7 3 B 17 17 B 27 27 ? T T 'X-RAY DIFFRACTION' ? 8 3 A 1 1 A 11 11 ? U U 'X-RAY DIFFRACTION' ? 9 3 D 2 2 D 97 97 ? A A 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.0 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 MLPHARE phasing . ? 4 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" U DT 4 ? ? "C3'" U DT 4 ? ? 1.362 1.419 -0.057 0.006 N 2 1 "O3'" U DC 12 ? ? "C3'" U DC 12 ? ? 1.367 1.419 -0.052 0.006 N 3 1 N3 U DA 14 ? ? C4 U DA 14 ? ? 1.300 1.344 -0.044 0.006 N 4 1 "O3'" U DT 19 ? ? "C3'" U DT 19 ? ? 1.379 1.419 -0.040 0.006 N 5 1 "O3'" T DA 8 ? ? "C3'" T DA 8 ? ? 1.342 1.419 -0.077 0.006 N 6 1 N7 T DA 12 ? ? C8 T DA 12 ? ? 1.263 1.311 -0.048 0.007 N 7 1 C5 T DA 22 ? ? N7 T DA 22 ? ? 1.346 1.388 -0.042 0.006 N 8 1 SE B MSE 43 ? ? CE B MSE 43 ? ? 1.583 1.950 -0.367 0.059 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" U DC 1 ? ? "C1'" U DC 1 ? ? N1 U DC 1 ? ? 112.50 108.30 4.20 0.30 N 2 1 P U DG 3 ? ? "O5'" U DG 3 ? ? "C5'" U DG 3 ? ? 110.78 120.90 -10.12 1.60 N 3 1 "O4'" U DG 3 ? ? "C4'" U DG 3 ? ? "C3'" U DG 3 ? ? 110.50 106.00 4.50 0.60 N 4 1 "C5'" U DG 3 ? ? "C4'" U DG 3 ? ? "C3'" U DG 3 ? ? 101.02 114.10 -13.08 1.80 N 5 1 "O4'" U DG 3 ? ? "C1'" U DG 3 ? ? N9 U DG 3 ? ? 110.82 108.30 2.52 0.30 N 6 1 N1 U DG 3 ? ? C6 U DG 3 ? ? O6 U DG 3 ? ? 123.57 119.90 3.67 0.60 N 7 1 N3 U DT 4 ? ? C4 U DT 4 ? ? O4 U DT 4 ? ? 123.58 119.90 3.68 0.60 N 8 1 "O4'" U DA 5 ? ? "C1'" U DA 5 ? ? "C2'" U DA 5 ? ? 97.90 105.90 -8.00 0.80 N 9 1 "O4'" U DT 6 ? ? "C1'" U DT 6 ? ? N1 U DT 6 ? ? 116.90 108.30 8.60 0.30 N 10 1 "O4'" U DC 7 ? ? "C1'" U DC 7 ? ? N1 U DC 7 ? ? 110.96 108.30 2.66 0.30 N 11 1 "O5'" U DA 8 ? ? "C5'" U DA 8 ? ? "C4'" U DA 8 ? ? 103.48 109.40 -5.92 0.80 N 12 1 "O4'" U DA 8 ? ? "C4'" U DA 8 ? ? "C3'" U DA 8 ? ? 109.68 106.00 3.68 0.60 N 13 1 "C1'" U DA 8 ? ? "O4'" U DA 8 ? ? "C4'" U DA 8 ? ? 104.01 110.10 -6.09 1.00 N 14 1 "O4'" U DA 8 ? ? "C1'" U DA 8 ? ? "C2'" U DA 8 ? ? 101.02 105.90 -4.88 0.80 N 15 1 "O4'" U DA 8 ? ? "C1'" U DA 8 ? ? N9 U DA 8 ? ? 119.18 108.30 10.88 0.30 N 16 1 "C3'" U DA 8 ? ? "O3'" U DA 8 ? ? P U DC 9 ? ? 131.31 119.70 11.61 1.20 Y 17 1 "O4'" U DC 9 ? ? "C1'" U DC 9 ? ? N1 U DC 9 ? ? 117.03 108.30 8.73 0.30 N 18 1 "O4'" U DC 10 ? ? "C1'" U DC 10 ? ? N1 U DC 10 ? ? 112.49 108.30 4.19 0.30 N 19 1 N9 U DG 11 ? ? "C1'" U DG 11 ? ? "C2'" U DG 11 ? ? 123.01 114.30 8.71 1.40 N 20 1 "O4'" U DG 11 ? ? "C1'" U DG 11 ? ? N9 U DG 11 ? ? 99.95 108.00 -8.05 0.70 N 21 1 C6 U DG 11 ? ? N1 U DG 11 ? ? C2 U DG 11 ? ? 129.02 125.10 3.92 0.60 N 22 1 "O4'" U DC 13 ? ? "C1'" U DC 13 ? ? "C2'" U DC 13 ? ? 99.29 105.90 -6.61 0.80 N 23 1 N1 U DC 13 ? ? C2 U DC 13 ? ? O2 U DC 13 ? ? 113.83 118.90 -5.07 0.60 N 24 1 "O4'" U DG 15 ? ? "C1'" U DG 15 ? ? N9 U DG 15 ? ? 110.69 108.30 2.39 0.30 N 25 1 N3 U DT 16 ? ? C4 U DT 16 ? ? O4 U DT 16 ? ? 124.05 119.90 4.15 0.60 N 26 1 C5 U DT 16 ? ? C4 U DT 16 ? ? O4 U DT 16 ? ? 119.55 124.90 -5.35 0.70 N 27 1 C4 U DT 16 ? ? C5 U DT 16 ? ? C7 U DT 16 ? ? 115.12 119.00 -3.88 0.60 N 28 1 "O4'" U DG 17 ? ? "C1'" U DG 17 ? ? N9 U DG 17 ? ? 103.01 108.00 -4.99 0.70 N 29 1 "O5'" U DC 18 ? ? P U DC 18 ? ? OP1 U DC 18 ? ? 97.31 105.70 -8.39 0.90 N 30 1 "C5'" U DC 18 ? ? "C4'" U DC 18 ? ? "O4'" U DC 18 ? ? 92.75 109.30 -16.55 1.90 N 31 1 "O4'" U DC 18 ? ? "C1'" U DC 18 ? ? N1 U DC 18 ? ? 114.29 108.30 5.99 0.30 N 32 1 N3 U DT 19 ? ? C2 U DT 19 ? ? O2 U DT 19 ? ? 118.68 122.30 -3.62 0.60 N 33 1 N9 U DG 21 ? ? "C1'" U DG 21 ? ? "C2'" U DG 21 ? ? 124.23 114.30 9.93 1.40 N 34 1 "O4'" U DG 21 ? ? "C1'" U DG 21 ? ? N9 U DG 21 ? ? 102.49 108.00 -5.51 0.70 N 35 1 C8 U DG 21 ? ? N9 U DG 21 ? ? C4 U DG 21 ? ? 103.48 106.40 -2.92 0.40 N 36 1 N9 U DG 21 ? ? C4 U DG 21 ? ? C5 U DG 21 ? ? 108.00 105.40 2.60 0.40 N 37 1 P U DA 22 ? ? "O5'" U DA 22 ? ? "C5'" U DA 22 ? ? 106.17 120.90 -14.73 1.60 N 38 1 "O4'" U DC 23 ? ? "C1'" U DC 23 ? ? "C2'" U DC 23 ? ? 100.15 105.90 -5.75 0.80 N 39 1 N3 U DT 25 ? ? C4 U DT 25 ? ? O4 U DT 25 ? ? 123.90 119.90 4.00 0.60 N 40 1 "O4'" U DG 27 ? ? "C1'" U DG 27 ? ? N9 U DG 27 ? ? 113.63 108.30 5.33 0.30 N 41 1 "O4'" T DC 1 ? ? "C4'" T DC 1 ? ? "C3'" T DC 1 ? ? 101.54 104.50 -2.96 0.40 N 42 1 "O4'" T DC 2 ? ? "C1'" T DC 2 ? ? N1 T DC 2 ? ? 111.03 108.30 2.73 0.30 N 43 1 N1 T DC 2 ? ? C2 T DC 2 ? ? O2 T DC 2 ? ? 114.48 118.90 -4.42 0.60 N 44 1 "C1'" T DA 3 ? ? "O4'" T DA 3 ? ? "C4'" T DA 3 ? ? 116.37 110.30 6.07 0.70 N 45 1 "O4'" T DT 4 ? ? "C1'" T DT 4 ? ? "C2'" T DT 4 ? ? 100.76 105.90 -5.14 0.80 N 46 1 N3 T DT 4 ? ? C4 T DT 4 ? ? O4 T DT 4 ? ? 124.51 119.90 4.61 0.60 N 47 1 "C5'" T DT 6 ? ? "C4'" T DT 6 ? ? "O4'" T DT 6 ? ? 94.93 109.30 -14.37 1.90 N 48 1 N3 T DT 6 ? ? C4 T DT 6 ? ? O4 T DT 6 ? ? 124.91 119.90 5.01 0.60 N 49 1 C5 T DT 6 ? ? C4 T DT 6 ? ? O4 T DT 6 ? ? 120.61 124.90 -4.29 0.70 N 50 1 "O5'" T DC 7 ? ? P T DC 7 ? ? OP1 T DC 7 ? ? 99.90 105.70 -5.80 0.90 N 51 1 "C5'" T DC 7 ? ? "C4'" T DC 7 ? ? "O4'" T DC 7 ? ? 97.38 109.30 -11.92 1.90 N 52 1 "O4'" T DC 7 ? ? "C1'" T DC 7 ? ? N1 T DC 7 ? ? 102.33 108.00 -5.67 0.70 N 53 1 "C3'" T DG 10 ? ? "O3'" T DG 10 ? ? P T DC 11 ? ? 130.03 119.70 10.33 1.20 Y 54 1 "O5'" T DC 11 ? ? P T DC 11 ? ? OP1 T DC 11 ? ? 98.60 105.70 -7.10 0.90 N 55 1 "O4'" T DC 11 ? ? "C1'" T DC 11 ? ? N1 T DC 11 ? ? 113.25 108.30 4.95 0.30 N 56 1 "O4'" T DG 15 ? ? "C1'" T DG 15 ? ? N9 T DG 15 ? ? 101.10 108.00 -6.90 0.70 N 57 1 N1 T DG 15 ? ? C6 T DG 15 ? ? O6 T DG 15 ? ? 114.96 119.90 -4.94 0.60 N 58 1 N1 T DC 17 ? ? "C1'" T DC 17 ? ? "C2'" T DC 17 ? ? 123.12 114.30 8.82 1.40 N 59 1 "O4'" T DC 17 ? ? "C1'" T DC 17 ? ? N1 T DC 17 ? ? 99.30 108.00 -8.70 0.70 N 60 1 "O5'" T DG 18 ? ? P T DG 18 ? ? OP2 T DG 18 ? ? 100.27 105.70 -5.43 0.90 N 61 1 "C1'" T DG 18 ? ? "O4'" T DG 18 ? ? "C4'" T DG 18 ? ? 102.63 110.10 -7.47 1.00 N 62 1 "O4'" T DG 18 ? ? "C1'" T DG 18 ? ? N9 T DG 18 ? ? 112.72 108.30 4.42 0.30 N 63 1 C2 T DG 19 ? ? N3 T DG 19 ? ? C4 T DG 19 ? ? 107.93 111.90 -3.97 0.50 N 64 1 N1 T DG 19 ? ? C2 T DG 19 ? ? N2 T DG 19 ? ? 110.68 116.20 -5.52 0.90 N 65 1 N3 T DT 20 ? ? C4 T DT 20 ? ? O4 T DT 20 ? ? 125.79 119.90 5.89 0.60 N 66 1 C5 T DT 20 ? ? C4 T DT 20 ? ? O4 T DT 20 ? ? 119.83 124.90 -5.07 0.70 N 67 1 "C3'" T DG 21 ? ? "C2'" T DG 21 ? ? "C1'" T DG 21 ? ? 95.92 102.40 -6.48 0.80 N 68 1 N1 T DG 21 ? ? C6 T DG 21 ? ? O6 T DG 21 ? ? 123.55 119.90 3.65 0.60 N 69 1 P T DA 22 ? ? "O5'" T DA 22 ? ? "C5'" T DA 22 ? ? 110.92 120.90 -9.98 1.60 N 70 1 C4 T DA 22 ? ? C5 T DA 22 ? ? C6 T DA 22 ? ? 120.77 117.00 3.77 0.50 N 71 1 C6 T DA 22 ? ? C5 T DA 22 ? ? N7 T DA 22 ? ? 127.82 132.30 -4.48 0.70 N 72 1 "O4'" T DT 23 ? ? "C1'" T DT 23 ? ? N1 T DT 23 ? ? 112.06 108.30 3.76 0.30 N 73 1 N3 T DT 23 ? ? C4 T DT 23 ? ? O4 T DT 23 ? ? 124.83 119.90 4.93 0.60 N 74 1 C6 T DT 23 ? ? C5 T DT 23 ? ? C7 T DT 23 ? ? 119.09 122.90 -3.81 0.60 N 75 1 "O4'" T DG 27 ? ? "C1'" T DG 27 ? ? N9 T DG 27 ? ? 110.36 108.30 2.06 0.30 N 76 1 O H GLU 368 ? ? C H GLU 368 ? ? N H LEU 369 ? ? 110.24 122.70 -12.46 1.60 Y 77 1 NE H ARG 411 ? ? CZ H ARG 411 ? ? NH1 H ARG 411 ? ? 123.96 120.30 3.66 0.50 N 78 1 NE H ARG 411 ? ? CZ H ARG 411 ? ? NH2 H ARG 411 ? ? 115.67 120.30 -4.63 0.50 N 79 1 CB A ASP 15 ? ? CG A ASP 15 ? ? OD1 A ASP 15 ? ? 124.59 118.30 6.29 0.90 N 80 1 CB B ASP 15 ? ? CG B ASP 15 ? ? OD2 B ASP 15 ? ? 123.86 118.30 5.56 0.90 N 81 1 N B HIS 94 ? ? CA B HIS 94 ? ? C B HIS 94 ? ? 89.71 111.00 -21.29 2.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS H 375 ? ? -178.17 -13.46 2 1 THR B 3 ? ? 31.20 74.70 3 1 HIS B 95 ? ? -126.36 -167.41 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 GLU _pdbx_validate_peptide_omega.auth_asym_id_1 H _pdbx_validate_peptide_omega.auth_seq_id_1 368 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 LEU _pdbx_validate_peptide_omega.auth_asym_id_2 H _pdbx_validate_peptide_omega.auth_seq_id_2 369 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 144.02 # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id GLU _pdbx_validate_main_chain_plane.auth_asym_id H _pdbx_validate_main_chain_plane.auth_seq_id 368 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id ? _pdbx_validate_main_chain_plane.improper_torsion_angle 13.47 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 H GLU 367 ? CG ? C GLU 2 CG 2 1 Y 1 H GLU 367 ? CD ? C GLU 2 CD 3 1 Y 1 H GLU 367 ? OE1 ? C GLU 2 OE1 4 1 Y 1 H GLU 367 ? OE2 ? C GLU 2 OE2 5 1 Y 1 H GLU 368 ? CG ? C GLU 3 CG 6 1 Y 1 H GLU 368 ? CD ? C GLU 3 CD 7 1 Y 1 H GLU 368 ? OE1 ? C GLU 3 OE1 8 1 Y 1 H GLU 368 ? OE2 ? C GLU 3 OE2 9 1 Y 1 H GLU 370 ? CG ? C GLU 5 CG 10 1 Y 1 H GLU 370 ? CD ? C GLU 5 CD 11 1 Y 1 H GLU 370 ? OE1 ? C GLU 5 OE1 12 1 Y 1 H GLU 370 ? OE2 ? C GLU 5 OE2 13 1 Y 1 H LYS 371 ? CG ? C LYS 6 CG 14 1 Y 1 H LYS 371 ? CD ? C LYS 6 CD 15 1 Y 1 H LYS 371 ? CE ? C LYS 6 CE 16 1 Y 1 H LYS 371 ? NZ ? C LYS 6 NZ 17 1 Y 1 H LYS 375 ? CG ? C LYS 10 CG 18 1 Y 1 H LYS 375 ? CD ? C LYS 10 CD 19 1 Y 1 H LYS 375 ? CE ? C LYS 10 CE 20 1 Y 1 H LYS 375 ? NZ ? C LYS 10 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 0 H SER 366 ? C SER 1 2 1 Y 0 H GLU 367 ? C GLU 2 3 1 Y 0 H GLU 368 ? C GLU 3 4 1 Y 1 H GLU 427 ? C GLU 62 5 1 Y 1 H SER 428 ? C SER 63 6 1 Y 1 H ARG 429 ? C ARG 64 7 1 Y 1 H THR 430 ? C THR 65 8 1 Y 1 H ARG 431 ? C ARG 66 9 1 Y 1 H LYS 432 ? C LYS 67 10 1 Y 1 H LEU 433 ? C LEU 68 11 1 Y 1 H ARG 434 ? C ARG 69 12 1 Y 1 H ASP 435 ? C ASP 70 13 1 Y 1 H PHE 436 ? C PHE 71 14 1 Y 1 H LEU 437 ? C LEU 72 15 1 Y 1 H GLU 438 ? C GLU 73 16 1 Y 1 A MET 1 ? D MET 1 17 1 Y 1 B MET 1 ? E MET 1 18 1 Y 1 B HIS 98 ? E HIS 98 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1RIO 'double helix' 1RIO 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 27 1_555 0.364 -0.294 0.118 -0.396 -6.032 3.121 1 U_DC1:DG27_T U 1 ? T 27 ? 19 1 1 A DG 2 1_555 B DC 26 1_555 -1.113 -0.078 0.492 13.686 -7.631 3.550 2 U_DG2:DC26_T U 2 ? T 26 ? 19 1 1 A DG 3 1_555 B DC 25 1_555 -0.155 -0.237 0.215 1.734 -14.080 2.859 3 U_DG3:DC25_T U 3 ? T 25 ? 19 1 1 A DT 4 1_555 B DA 24 1_555 0.361 -0.104 0.449 -5.243 -3.438 -4.893 4 U_DT4:DA24_T U 4 ? T 24 ? 20 1 1 A DA 5 1_555 B DT 23 1_555 0.266 -0.231 0.293 2.353 -6.035 0.987 5 U_DA5:DT23_T U 5 ? T 23 ? 20 1 1 A DT 6 1_555 B DA 22 1_555 0.259 0.211 -0.255 8.358 -6.854 -17.722 6 U_DT6:DA22_T U 6 ? T 22 ? 20 1 1 A DC 7 1_555 B DG 21 1_555 0.010 -0.388 0.025 -9.158 -0.981 -12.439 7 U_DC7:DG21_T U 7 ? T 21 ? 19 1 1 A DA 8 1_555 B DT 20 1_555 0.298 -0.338 -0.064 2.930 -2.773 -3.459 8 U_DA8:DT20_T U 8 ? T 20 ? 20 1 1 A DC 9 1_555 B DG 19 1_555 0.239 -0.019 -0.229 3.199 -5.289 -1.269 9 U_DC9:DG19_T U 9 ? T 19 ? 19 1 1 A DC 10 1_555 B DG 18 1_555 0.303 -0.122 -0.524 -0.716 10.476 -0.801 10 U_DC10:DG18_T U 10 ? T 18 ? 19 1 1 A DG 11 1_555 B DC 17 1_555 -0.354 -0.204 0.496 0.249 -16.921 -2.744 11 U_DG11:DC17_T U 11 ? T 17 ? 19 1 1 A DC 12 1_555 B DG 16 1_555 0.235 0.012 0.098 -7.817 -13.459 1.933 12 U_DC12:DG16_T U 12 ? T 16 ? 19 1 1 A DC 13 1_555 B DG 15 1_555 0.298 -0.177 0.030 2.043 -7.632 -0.266 13 U_DC13:DG15_T U 13 ? T 15 ? 19 1 1 A DA 14 1_555 B DT 14 1_555 -0.010 -0.116 0.167 -5.232 -7.850 -0.433 14 U_DA14:DT14_T U 14 ? T 14 ? 20 1 1 A DG 15 1_555 B DC 13 1_555 -0.091 -0.131 0.141 -0.441 -10.137 -0.960 15 U_DG15:DC13_T U 15 ? T 13 ? 19 1 1 A DT 16 1_555 B DA 12 1_555 -0.347 -0.213 0.046 -12.374 -16.331 -0.214 16 U_DT16:DA12_T U 16 ? T 12 ? 20 1 1 A DG 17 1_555 B DC 11 1_555 -0.329 -0.266 -0.020 -2.045 -1.042 -0.930 17 U_DG17:DC11_T U 17 ? T 11 ? 19 1 1 A DC 18 1_555 B DG 10 1_555 0.263 -0.280 0.000 3.553 -2.501 -3.264 18 U_DC18:DG10_T U 18 ? T 10 ? 19 1 1 A DT 19 1_555 B DA 9 1_555 -0.088 -0.063 0.069 -5.013 -9.706 8.690 19 U_DT19:DA9_T U 19 ? T 9 ? 20 1 1 A DT 20 1_555 B DA 8 1_555 -0.507 -0.043 -0.164 5.840 -10.886 4.311 20 U_DT20:DA8_T U 20 ? T 8 ? 20 1 1 A DG 21 1_555 B DC 7 1_555 -0.275 -0.053 0.076 10.005 -8.119 -0.482 21 U_DG21:DC7_T U 21 ? T 7 ? 19 1 1 A DA 22 1_555 B DT 6 1_555 0.541 -0.141 0.226 11.308 -10.753 0.068 22 U_DA22:DT6_T U 22 ? T 6 ? 20 1 1 A DC 23 1_555 B DG 5 1_555 0.198 -0.150 -0.202 6.528 -12.081 3.540 23 U_DC23:DG5_T U 23 ? T 5 ? 19 1 1 A DA 24 1_555 B DT 4 1_555 -0.218 -0.157 0.047 -0.504 -13.716 -1.704 24 U_DA24:DT4_T U 24 ? T 4 ? 20 1 1 A DT 25 1_555 B DA 3 1_555 -0.033 -0.184 0.029 1.699 -5.820 1.261 25 U_DT25:DA3_T U 25 ? T 3 ? 20 1 1 A DG 26 1_555 B DC 2 1_555 0.168 -0.151 0.207 2.593 -6.678 -11.453 26 U_DG26:DC2_T U 26 ? T 2 ? 19 1 1 A DG 27 1_555 B DC 1 1_555 -0.251 -0.262 0.049 4.789 -10.346 -5.580 27 U_DG27:DC1_T U 27 ? T 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 27 1_555 A DG 2 1_555 B DC 26 1_555 -0.104 0.780 3.059 -1.346 2.458 31.370 1.003 -0.046 3.111 4.535 2.483 31.492 1 UU_DC1DG2:DC26DG27_TT U 1 ? T 27 ? U 2 ? T 26 ? 1 A DG 2 1_555 B DC 26 1_555 A DG 3 1_555 B DC 25 1_555 0.649 -0.472 3.544 2.178 6.985 39.988 -1.516 -0.674 3.446 10.111 -3.153 40.625 2 UU_DG2DG3:DC25DC26_TT U 2 ? T 26 ? U 3 ? T 25 ? 1 A DG 3 1_555 B DC 25 1_555 A DT 4 1_555 B DA 24 1_555 -0.205 -0.892 3.523 -0.394 -2.893 36.275 -0.990 0.268 3.583 -4.638 0.631 36.388 3 UU_DG3DT4:DA24DC25_TT U 3 ? T 25 ? U 4 ? T 24 ? 1 A DT 4 1_555 B DA 24 1_555 A DA 5 1_555 B DT 23 1_555 0.345 -0.417 3.032 0.984 -5.652 36.239 0.063 -0.422 3.068 -9.017 -1.571 36.675 4 UU_DT4DA5:DT23DA24_TT U 4 ? T 24 ? U 5 ? T 23 ? 1 A DA 5 1_555 B DT 23 1_555 A DT 6 1_555 B DA 22 1_555 -0.712 -0.272 3.112 3.096 6.028 22.501 -2.553 2.718 2.821 15.016 -7.713 23.487 5 UU_DA5DT6:DA22DT23_TT U 5 ? T 23 ? U 6 ? T 22 ? 1 A DT 6 1_555 B DA 22 1_555 A DC 7 1_555 B DG 21 1_555 0.289 0.272 3.736 -3.353 -6.280 39.878 1.189 -0.843 3.619 -9.120 4.868 40.483 6 UU_DT6DC7:DG21DA22_TT U 6 ? T 22 ? U 7 ? T 21 ? 1 A DC 7 1_555 B DG 21 1_555 A DA 8 1_555 B DT 20 1_555 0.532 -0.394 3.101 -0.736 8.604 29.997 -2.257 -1.120 2.867 16.206 1.385 31.188 7 UU_DC7DA8:DT20DG21_TT U 7 ? T 21 ? U 8 ? T 20 ? 1 A DA 8 1_555 B DT 20 1_555 A DC 9 1_555 B DG 19 1_555 0.712 -1.334 3.325 -0.440 3.725 33.638 -2.889 -1.293 3.154 6.412 0.757 33.841 8 UU_DA8DC9:DG19DT20_TT U 8 ? T 20 ? U 9 ? T 19 ? 1 A DC 9 1_555 B DG 19 1_555 A DC 10 1_555 B DG 18 1_555 -0.771 -1.319 3.615 4.458 7.407 21.934 -5.764 3.412 2.815 18.565 -11.173 23.556 9 UU_DC9DC10:DG18DG19_TT U 9 ? T 19 ? U 10 ? T 18 ? 1 A DC 10 1_555 B DG 18 1_555 A DG 11 1_555 B DC 17 1_555 -2.002 0.934 3.648 -6.878 -9.341 30.317 3.551 2.203 3.570 -17.094 12.588 32.412 10 UU_DC10DG11:DC17DG18_TT U 10 ? T 18 ? U 11 ? T 17 ? 1 A DG 11 1_555 B DC 17 1_555 A DC 12 1_555 B DG 16 1_555 1.468 0.695 3.517 5.760 -3.352 42.688 1.305 -1.375 3.614 -4.571 -7.855 43.181 11 UU_DG11DC12:DG16DC17_TT U 11 ? T 17 ? U 12 ? T 16 ? 1 A DC 12 1_555 B DG 16 1_555 A DC 13 1_555 B DG 15 1_555 -0.686 0.930 3.079 0.155 7.462 25.929 0.124 1.510 3.212 16.208 -0.338 26.964 12 UU_DC12DC13:DG15DG16_TT U 12 ? T 16 ? U 13 ? T 15 ? 1 A DC 13 1_555 B DG 15 1_555 A DA 14 1_555 B DT 14 1_555 0.032 2.283 3.548 -1.767 -6.190 47.989 3.285 -0.182 3.245 -7.571 2.161 48.393 13 UU_DC13DA14:DT14DG15_TT U 13 ? T 15 ? U 14 ? T 14 ? 1 A DA 14 1_555 B DT 14 1_555 A DG 15 1_555 B DC 13 1_555 0.270 0.097 3.221 -3.894 8.822 32.031 -1.271 -1.104 3.085 15.552 6.865 33.415 14 UU_DA14DG15:DC13DT14_TT U 14 ? T 14 ? U 15 ? T 13 ? 1 A DG 15 1_555 B DC 13 1_555 A DT 16 1_555 B DA 12 1_555 -0.730 -0.882 3.522 -0.349 5.074 31.333 -2.599 1.267 3.349 9.317 0.640 31.733 15 UU_DG15DT16:DA12DC13_TT U 15 ? T 13 ? U 16 ? T 12 ? 1 A DT 16 1_555 B DA 12 1_555 A DG 17 1_555 B DC 11 1_555 0.416 1.133 3.180 -1.773 1.456 39.741 1.500 -0.812 3.197 2.140 2.605 39.805 16 UU_DT16DG17:DC11DA12_TT U 16 ? T 12 ? U 17 ? T 11 ? 1 A DG 17 1_555 B DC 11 1_555 A DC 18 1_555 B DG 10 1_555 0.609 -0.365 3.233 -0.113 0.356 30.685 -0.760 -1.172 3.226 0.673 0.213 30.687 17 UU_DG17DC18:DG10DC11_TT U 17 ? T 11 ? U 18 ? T 10 ? 1 A DC 18 1_555 B DG 10 1_555 A DT 19 1_555 B DA 9 1_555 0.758 -0.505 3.437 4.229 9.976 34.058 -2.334 -0.596 3.235 16.521 -7.003 35.692 18 UU_DC18DT19:DA9DG10_TT U 18 ? T 10 ? U 19 ? T 9 ? 1 A DT 19 1_555 B DA 9 1_555 A DT 20 1_555 B DA 8 1_555 -0.056 0.016 3.021 3.410 0.656 33.476 -0.071 0.610 3.001 1.135 -5.900 33.650 19 UU_DT19DT20:DA8DA9_TT U 19 ? T 9 ? U 20 ? T 8 ? 1 A DT 20 1_555 B DA 8 1_555 A DG 21 1_555 B DC 7 1_555 -0.133 0.514 3.352 -0.653 8.107 32.933 -0.481 0.119 3.382 14.035 1.130 33.895 20 UU_DT20DG21:DC7DA8_TT U 20 ? T 8 ? U 21 ? T 7 ? 1 A DG 21 1_555 B DC 7 1_555 A DA 22 1_555 B DT 6 1_555 0.053 -0.375 3.207 -2.261 3.459 38.312 -0.986 -0.353 3.155 5.252 3.432 38.526 21 UU_DG21DA22:DT6DC7_TT U 21 ? T 7 ? U 22 ? T 6 ? 1 A DA 22 1_555 B DT 6 1_555 A DC 23 1_555 B DG 5 1_555 0.429 -1.161 3.326 3.398 5.702 27.466 -3.692 -0.098 3.057 11.792 -7.026 28.242 22 UU_DA22DC23:DG5DT6_TT U 22 ? T 6 ? U 23 ? T 5 ? 1 A DC 23 1_555 B DG 5 1_555 A DA 24 1_555 B DT 4 1_555 -1.027 -0.226 3.457 -2.960 8.274 33.069 -1.775 1.249 3.381 14.226 5.089 34.186 23 UU_DC23DA24:DT4DG5_TT U 23 ? T 5 ? U 24 ? T 4 ? 1 A DA 24 1_555 B DT 4 1_555 A DT 25 1_555 B DA 3 1_555 -0.132 -0.297 3.285 0.580 4.758 30.794 -1.458 0.356 3.201 8.892 -1.084 31.156 24 UU_DA24DT25:DA3DT4_TT U 24 ? T 4 ? U 25 ? T 3 ? 1 A DT 25 1_555 B DA 3 1_555 A DG 26 1_555 B DC 2 1_555 -0.241 2.001 3.287 1.356 -6.927 48.633 2.910 0.389 2.986 -8.360 -1.637 49.112 25 UU_DT25DG26:DC2DA3_TT U 25 ? T 3 ? U 26 ? T 2 ? 1 A DG 26 1_555 B DC 2 1_555 A DG 27 1_555 B DC 1 1_555 0.175 -0.137 3.390 1.270 7.151 23.138 -2.665 -0.001 3.208 17.289 -3.071 24.236 26 UU_DG26DG27:DC1DC2_TT U 26 ? T 2 ? U 27 ? T 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 5 'CALCIUM ION' CA 6 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 7 water HOH #