data_1SSP # _entry.id 1SSP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1SSP pdb_00001ssp 10.2210/pdb1ssp/pdb NDB PD0052 ? ? RCSB RCSB000968 ? ? WWPDB D_1000000968 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1SSP _pdbx_database_status.recvd_initial_deposition_date 1999-04-28 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Parikh, S.S.' 1 'Mol, C.D.' 2 'Slupphaug, G.' 3 'Bharati, S.' 4 'Krokan, H.E.' 5 'Tainer, J.A.' 6 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Base excision repair initiation revealed by crystal structures and binding kinetics of human uracil-DNA glycosylase with DNA.' 'EMBO J.' 17 5214 5226 1998 EMJODG UK 0261-4189 0897 ? 9724657 10.1093/emboj/17.17.5214 1 'A Nucleotide-Flipping Mechanism from the Structure of Human Uracil-DNA Glycosylase Bound to DNA' Nature 384 87 ? 1996 NATUAS UK 0028-0836 0006 ? ? 10.1038/384087a0 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Parikh, S.S.' 1 ? primary 'Mol, C.D.' 2 ? primary 'Slupphaug, G.' 3 ? primary 'Bharati, S.' 4 ? primary 'Krokan, H.E.' 5 ? primary 'Tainer, J.A.' 6 ? 1 'Slupphaug, G.' 7 ? 1 'Mol, C.D.' 8 ? 1 'Kavli, B.' 9 ? 1 'Arvai, A.S.' 10 ? 1 'Krokan, H.E.' 11 ? 1 'Tainer, J.A.' 12 ? # _cell.entry_id 1SSP _cell.length_a 121.700 _cell.length_b 48.500 _cell.length_c 65.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SSP _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 18 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*TP*GP*TP*(D1P)P*AP*TP*CP*TP*T)-3'" 2892.878 1 ? ? ? ? 2 polymer syn "5'-D(*AP*AP*AP*GP*AP*TP*AP*AP*CP*AP*G)-3'" 3399.276 1 ? ? ? 'COMPLEXED WITH URACIL' 3 polymer man 'URACIL-DNA GLYCOSYLASE' 25544.137 1 3.2.2.3 ? MITOCHONDRIAL ? 4 non-polymer syn URACIL 112.087 1 ? ? ? ? 5 water nat water 18.015 265 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name 'UDG, UNG' # _entity_name_sys.entity_id 3 _entity_name_sys.name 'EC 3.2.2.3' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DC)(DT)(DG)(DT)(ORP)(DA)(DT)(DC)(DT)(DT)' CTGTXATCTT A ? 2 polydeoxyribonucleotide no no '(DA)(DA)(DA)(DG)(DA)(DT)(DA)(DA)(DC)(DA)(DG)' AAAGATAACAG B ? 3 'polypeptide(L)' no no ;MEFFGESWKKHLSGEFGKPYFIKLMGFVAEERKHYTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQ RPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLV FLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWKEL ; ;MEFFGESWKKHLSGEFGKPYFIKLMGFVAEERKHYTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQ RPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLV FLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWKEL ; E ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DT n 1 3 DG n 1 4 DT n 1 5 ORP n 1 6 DA n 1 7 DT n 1 8 DC n 1 9 DT n 1 10 DT n 2 1 DA n 2 2 DA n 2 3 DA n 2 4 DG n 2 5 DA n 2 6 DT n 2 7 DA n 2 8 DA n 2 9 DC n 2 10 DA n 2 11 DG n 3 1 MET n 3 2 GLU n 3 3 PHE n 3 4 PHE n 3 5 GLY n 3 6 GLU n 3 7 SER n 3 8 TRP n 3 9 LYS n 3 10 LYS n 3 11 HIS n 3 12 LEU n 3 13 SER n 3 14 GLY n 3 15 GLU n 3 16 PHE n 3 17 GLY n 3 18 LYS n 3 19 PRO n 3 20 TYR n 3 21 PHE n 3 22 ILE n 3 23 LYS n 3 24 LEU n 3 25 MET n 3 26 GLY n 3 27 PHE n 3 28 VAL n 3 29 ALA n 3 30 GLU n 3 31 GLU n 3 32 ARG n 3 33 LYS n 3 34 HIS n 3 35 TYR n 3 36 THR n 3 37 VAL n 3 38 TYR n 3 39 PRO n 3 40 PRO n 3 41 PRO n 3 42 HIS n 3 43 GLN n 3 44 VAL n 3 45 PHE n 3 46 THR n 3 47 TRP n 3 48 THR n 3 49 GLN n 3 50 MET n 3 51 CYS n 3 52 ASP n 3 53 ILE n 3 54 LYS n 3 55 ASP n 3 56 VAL n 3 57 LYS n 3 58 VAL n 3 59 VAL n 3 60 ILE n 3 61 LEU n 3 62 GLY n 3 63 GLN n 3 64 ASP n 3 65 PRO n 3 66 TYR n 3 67 HIS n 3 68 GLY n 3 69 PRO n 3 70 ASN n 3 71 GLN n 3 72 ALA n 3 73 HIS n 3 74 GLY n 3 75 LEU n 3 76 CYS n 3 77 PHE n 3 78 SER n 3 79 VAL n 3 80 GLN n 3 81 ARG n 3 82 PRO n 3 83 VAL n 3 84 PRO n 3 85 PRO n 3 86 PRO n 3 87 PRO n 3 88 SER n 3 89 LEU n 3 90 GLU n 3 91 ASN n 3 92 ILE n 3 93 TYR n 3 94 LYS n 3 95 GLU n 3 96 LEU n 3 97 SER n 3 98 THR n 3 99 ASP n 3 100 ILE n 3 101 GLU n 3 102 ASP n 3 103 PHE n 3 104 VAL n 3 105 HIS n 3 106 PRO n 3 107 GLY n 3 108 HIS n 3 109 GLY n 3 110 ASP n 3 111 LEU n 3 112 SER n 3 113 GLY n 3 114 TRP n 3 115 ALA n 3 116 LYS n 3 117 GLN n 3 118 GLY n 3 119 VAL n 3 120 LEU n 3 121 LEU n 3 122 LEU n 3 123 ASN n 3 124 ALA n 3 125 VAL n 3 126 LEU n 3 127 THR n 3 128 VAL n 3 129 ARG n 3 130 ALA n 3 131 HIS n 3 132 GLN n 3 133 ALA n 3 134 ASN n 3 135 SER n 3 136 HIS n 3 137 LYS n 3 138 GLU n 3 139 ARG n 3 140 GLY n 3 141 TRP n 3 142 GLU n 3 143 GLN n 3 144 PHE n 3 145 THR n 3 146 ASP n 3 147 ALA n 3 148 VAL n 3 149 VAL n 3 150 SER n 3 151 TRP n 3 152 LEU n 3 153 ASN n 3 154 GLN n 3 155 ASN n 3 156 SER n 3 157 ASN n 3 158 GLY n 3 159 LEU n 3 160 VAL n 3 161 PHE n 3 162 LEU n 3 163 LEU n 3 164 TRP n 3 165 GLY n 3 166 SER n 3 167 TYR n 3 168 ALA n 3 169 GLN n 3 170 LYS n 3 171 LYS n 3 172 GLY n 3 173 SER n 3 174 ALA n 3 175 ILE n 3 176 ASP n 3 177 ARG n 3 178 LYS n 3 179 ARG n 3 180 HIS n 3 181 HIS n 3 182 VAL n 3 183 LEU n 3 184 GLN n 3 185 THR n 3 186 ALA n 3 187 HIS n 3 188 PRO n 3 189 SER n 3 190 PRO n 3 191 LEU n 3 192 SER n 3 193 VAL n 3 194 TYR n 3 195 ARG n 3 196 GLY n 3 197 PHE n 3 198 PHE n 3 199 GLY n 3 200 CYS n 3 201 ARG n 3 202 HIS n 3 203 PHE n 3 204 SER n 3 205 LYS n 3 206 THR n 3 207 ASN n 3 208 GLU n 3 209 LEU n 3 210 LEU n 3 211 GLN n 3 212 LYS n 3 213 SER n 3 214 GLY n 3 215 LYS n 3 216 LYS n 3 217 PRO n 3 218 ILE n 3 219 ASP n 3 220 TRP n 3 221 LYS n 3 222 GLU n 3 223 LEU n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code 1 UNP UNG_HUMAN P13051 3 94 ? ? 2 PDB 1SSP 1SSP 1 ? ? ? 3 PDB 1SSP 1SSP 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1SSP E 4 ? 223 ? P13051 94 ? 313 ? 85 304 2 2 1SSP A 1 ? 10 ? 1SSP 1 ? 10 ? 1 10 3 3 1SSP B 1 ? 11 ? 1SSP 21 ? 31 ? 21 31 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 ORP saccharide . 2-DEOXY-5-PHOSPHONO-RIBOSE ? 'C5 H11 O7 P' 214.110 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 URA non-polymer . URACIL ? 'C4 H4 N2 O2' 112.087 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1SSP _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.0 _exptl_crystal.density_percent_sol 59 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details '20% PEG 4000, 100 MM HEPES PH 6.5, 10% DIOXANE, 1 MM DITHIOTHREITOL, VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'PEG 4000' ? ? ? 1 2 1 HEPES ? ? ? 1 3 1 DIOXANE ? ? ? 1 4 1 DITHIOTHREITOL ? ? ? 1 5 1 H2O ? ? ? 1 6 2 'PEG 4000' ? ? ? 1 7 2 HEPES ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector ? _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 1997-04-19 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.080 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL7-1' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL7-1 _diffrn_source.pdbx_wavelength 1.080 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1SSP _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.0 _reflns.d_resolution_high 1.9 _reflns.number_obs 30394 _reflns.number_all ? _reflns.percent_possible_obs 97.5 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.06 _reflns.pdbx_netI_over_sigmaI 18.9 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.3 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.97 _reflns_shell.percent_possible_all 87.1 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.212 _reflns_shell.meanI_over_sigI_obs 4.2 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1SSP _refine.ls_number_reflns_obs 29732 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2 _refine.pdbx_data_cutoff_high_absF 100000.0 _refine.pdbx_data_cutoff_low_absF 0.1 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.0 _refine.ls_d_res_high 1.9 _refine.ls_percent_reflns_obs 97.58 _refine.ls_R_factor_obs 0.198 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.198 _refine.ls_R_factor_R_free 0.245 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.0 _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] -11.6 _refine.aniso_B[2][2] 5.74 _refine.aniso_B[3][3] 5.95 _refine.aniso_B[1][2] 0.0 _refine.aniso_B[1][3] 0.0 _refine.aniso_B[2][3] 0.0 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1AKZ' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1808 _refine_hist.pdbx_number_atoms_nucleic_acid 417 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 265 _refine_hist.number_atoms_total 2498 _refine_hist.d_res_high 1.9 _refine_hist.d_res_low 20.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.34 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 8 _refine_ls_shell.d_res_high 1.90 _refine_ls_shell.d_res_low 1.99 _refine_ls_shell.number_reflns_R_work 2953 _refine_ls_shell.R_factor_R_work 0.268 _refine_ls_shell.percent_reflns_obs 85.3 _refine_ls_shell.R_factor_R_free 0.292 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PARHCSDX.PRO TOPHCSDX.PRO 'X-RAY DIFFRACTION' 2 PARAM_NDBX.DNA TOP_NDBX.DNA 'X-RAY DIFFRACTION' 3 PARAM19.SOL TOPH19.SOL 'X-RAY DIFFRACTION' # _struct.entry_id 1SSP _struct.title 'WILD-TYPE URACIL-DNA GLYCOSYLASE BOUND TO URACIL-CONTAINING DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1SSP _struct_keywords.pdbx_keywords HYDROLASE/DNA _struct_keywords.text 'DNA GLYCOSYLASE, DNA BASE EXCISION REPAIR, URACIL, DNA, PROTEIN/DNA, HYDROLASE-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU C 6 ? PHE C 16 ? GLU E 87 PHE E 97 1 ? 11 HELX_P HELX_P2 2 PRO C 19 ? HIS C 34 ? PRO E 100 HIS E 115 1 ? 16 HELX_P HELX_P3 3 PRO C 41 ? GLN C 43 ? PRO E 122 GLN E 124 5 ? 3 HELX_P HELX_P4 4 THR C 46 ? GLN C 49 ? THR E 127 GLN E 130 1 ? 4 HELX_P HELX_P5 5 ILE C 53 ? ASP C 55 ? ILE E 134 ASP E 136 5 ? 3 HELX_P HELX_P6 6 PRO C 87 ? ASP C 99 ? PRO E 168 ASP E 180 1 ? 13 HELX_P HELX_P7 7 SER C 112 ? GLN C 117 ? SER E 193 GLN E 198 1 ? 6 HELX_P HELX_P8 8 TRP C 141 ? GLN C 154 ? TRP E 222 GLN E 235 1 ? 14 HELX_P HELX_P9 9 SER C 166 ? ALA C 174 ? SER E 247 ALA E 255 1 ? 9 HELX_P HELX_P10 10 PRO C 190 ? ARG C 195 ? PRO E 271 ARG E 276 1 ? 6 HELX_P HELX_P11 11 HIS C 202 ? LYS C 212 ? HIS E 283 LYS E 293 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DT 4 "O3'" ? ? ? 1_555 A ORP 5 P ? ? A DT 4 A ORP 5 1_555 ? ? ? ? ? ? ? 1.601 ? ? covale2 covale one ? A ORP 5 O3 ? ? ? 1_555 A DA 6 P ? ? A ORP 5 A DA 6 1_555 ? ? ? ? ? ? ? 1.597 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 11 N1 ? ? A DC 1 B DG 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 11 O6 ? ? A DC 1 B DG 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 11 N2 ? ? A DC 1 B DG 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 10 N1 ? ? A DT 2 B DA 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 10 N6 ? ? A DT 2 B DA 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 3 B DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 3 B DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 3 B DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 8 N1 ? ? A DT 4 B DA 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 8 N6 ? ? A DT 4 B DA 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 6 N3 ? ? A DA 6 B DT 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 6 O4 ? ? A DA 6 B DT 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 7 B DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 7 B DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 8 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 8 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 8 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 9 B DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 9 B DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 10 N3 ? ? ? 1_555 B DA 2 N1 ? ? A DT 10 B DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 10 O4 ? ? ? 1_555 B DA 2 N6 ? ? A DT 10 B DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 TYR 38 C . ? TYR 119 E PRO 39 C ? PRO 120 E 1 -0.30 2 ARG 81 C . ? ARG 162 E PRO 82 C ? PRO 163 E 1 0.19 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL C 119 ? ASN C 123 ? VAL E 200 ASN E 204 A 2 VAL C 58 ? GLY C 62 ? VAL E 139 GLY E 143 A 3 VAL C 160 ? TRP C 164 ? VAL E 241 TRP E 245 A 4 HIS C 181 ? THR C 185 ? HIS E 262 THR E 266 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LEU C 120 ? O LEU E 201 N VAL C 58 ? N VAL E 139 A 2 3 O VAL C 59 ? O VAL E 140 N VAL C 160 ? N VAL E 241 A 3 4 O PHE C 161 ? O PHE E 242 N HIS C 181 ? N HIS E 262 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id E _struct_site.pdbx_auth_comp_id URA _struct_site.pdbx_auth_seq_id 55 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 10 _struct_site.details 'BINDING SITE FOR RESIDUE URA E 55' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 ORP A 5 ? ORP A 5 . ? 1_555 ? 2 AC1 10 GLY C 62 ? GLY E 143 . ? 1_555 ? 3 AC1 10 GLN C 63 ? GLN E 144 . ? 1_555 ? 4 AC1 10 ASP C 64 ? ASP E 145 . ? 1_555 ? 5 AC1 10 TYR C 66 ? TYR E 147 . ? 1_555 ? 6 AC1 10 CYS C 76 ? CYS E 157 . ? 1_555 ? 7 AC1 10 PHE C 77 ? PHE E 158 . ? 1_555 ? 8 AC1 10 ASN C 123 ? ASN E 204 . ? 1_555 ? 9 AC1 10 HIS C 187 ? HIS E 268 . ? 1_555 ? 10 AC1 10 HOH G . ? HOH E 804 . ? 1_555 ? # _database_PDB_matrix.entry_id 1SSP _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1SSP _atom_sites.fract_transf_matrix[1][1] 0.008217 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020618 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015385 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DT 2 2 2 DT T A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DT 4 4 4 DT T A . n A 1 5 ORP 5 5 5 ORP D1P A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DC 8 8 8 DC C A . n A 1 9 DT 9 9 9 DT T A . n A 1 10 DT 10 10 10 DT T A . n B 2 1 DA 1 21 21 DA A B . n B 2 2 DA 2 22 22 DA A B . n B 2 3 DA 3 23 23 DA A B . n B 2 4 DG 4 24 24 DG G B . n B 2 5 DA 5 25 25 DA A B . n B 2 6 DT 6 26 26 DT T B . n B 2 7 DA 7 27 27 DA A B . n B 2 8 DA 8 28 28 DA A B . n B 2 9 DC 9 29 29 DC C B . n B 2 10 DA 10 30 30 DA A B . n B 2 11 DG 11 31 31 DG G B . n C 3 1 MET 1 82 82 MET MET E . n C 3 2 GLU 2 83 83 GLU GLU E . n C 3 3 PHE 3 84 84 PHE PHE E . n C 3 4 PHE 4 85 85 PHE PHE E . n C 3 5 GLY 5 86 86 GLY GLY E . n C 3 6 GLU 6 87 87 GLU GLU E . n C 3 7 SER 7 88 88 SER SER E . n C 3 8 TRP 8 89 89 TRP TRP E . n C 3 9 LYS 9 90 90 LYS LYS E . n C 3 10 LYS 10 91 91 LYS LYS E . n C 3 11 HIS 11 92 92 HIS HIS E . n C 3 12 LEU 12 93 93 LEU LEU E . n C 3 13 SER 13 94 94 SER SER E . n C 3 14 GLY 14 95 95 GLY GLY E . n C 3 15 GLU 15 96 96 GLU GLU E . n C 3 16 PHE 16 97 97 PHE PHE E . n C 3 17 GLY 17 98 98 GLY GLY E . n C 3 18 LYS 18 99 99 LYS LYS E . n C 3 19 PRO 19 100 100 PRO PRO E . n C 3 20 TYR 20 101 101 TYR TYR E . n C 3 21 PHE 21 102 102 PHE PHE E . n C 3 22 ILE 22 103 103 ILE ILE E . n C 3 23 LYS 23 104 104 LYS LYS E . n C 3 24 LEU 24 105 105 LEU LEU E . n C 3 25 MET 25 106 106 MET MET E . n C 3 26 GLY 26 107 107 GLY GLY E . n C 3 27 PHE 27 108 108 PHE PHE E . n C 3 28 VAL 28 109 109 VAL VAL E . n C 3 29 ALA 29 110 110 ALA ALA E . n C 3 30 GLU 30 111 111 GLU GLU E . n C 3 31 GLU 31 112 112 GLU GLU E . n C 3 32 ARG 32 113 113 ARG ARG E . n C 3 33 LYS 33 114 114 LYS LYS E . n C 3 34 HIS 34 115 115 HIS HIS E . n C 3 35 TYR 35 116 116 TYR TYR E . n C 3 36 THR 36 117 117 THR THR E . n C 3 37 VAL 37 118 118 VAL VAL E . n C 3 38 TYR 38 119 119 TYR TYR E . n C 3 39 PRO 39 120 120 PRO PRO E . n C 3 40 PRO 40 121 121 PRO PRO E . n C 3 41 PRO 41 122 122 PRO PRO E . n C 3 42 HIS 42 123 123 HIS HIS E . n C 3 43 GLN 43 124 124 GLN GLN E . n C 3 44 VAL 44 125 125 VAL VAL E . n C 3 45 PHE 45 126 126 PHE PHE E . n C 3 46 THR 46 127 127 THR THR E . n C 3 47 TRP 47 128 128 TRP TRP E . n C 3 48 THR 48 129 129 THR THR E . n C 3 49 GLN 49 130 130 GLN GLN E . n C 3 50 MET 50 131 131 MET MET E . n C 3 51 CYS 51 132 132 CYS CYS E . n C 3 52 ASP 52 133 133 ASP ASP E . n C 3 53 ILE 53 134 134 ILE ILE E . n C 3 54 LYS 54 135 135 LYS LYS E . n C 3 55 ASP 55 136 136 ASP ASP E . n C 3 56 VAL 56 137 137 VAL VAL E . n C 3 57 LYS 57 138 138 LYS LYS E . n C 3 58 VAL 58 139 139 VAL VAL E . n C 3 59 VAL 59 140 140 VAL VAL E . n C 3 60 ILE 60 141 141 ILE ILE E . n C 3 61 LEU 61 142 142 LEU LEU E . n C 3 62 GLY 62 143 143 GLY GLY E . n C 3 63 GLN 63 144 144 GLN GLN E . n C 3 64 ASP 64 145 145 ASP ASP E . n C 3 65 PRO 65 146 146 PRO PRO E . n C 3 66 TYR 66 147 147 TYR TYR E . n C 3 67 HIS 67 148 148 HIS HIS E . n C 3 68 GLY 68 149 149 GLY GLY E . n C 3 69 PRO 69 150 150 PRO PRO E . n C 3 70 ASN 70 151 151 ASN ASN E . n C 3 71 GLN 71 152 152 GLN GLN E . n C 3 72 ALA 72 153 153 ALA ALA E . n C 3 73 HIS 73 154 154 HIS HIS E . n C 3 74 GLY 74 155 155 GLY GLY E . n C 3 75 LEU 75 156 156 LEU LEU E . n C 3 76 CYS 76 157 157 CYS CYS E . n C 3 77 PHE 77 158 158 PHE PHE E . n C 3 78 SER 78 159 159 SER SER E . n C 3 79 VAL 79 160 160 VAL VAL E . n C 3 80 GLN 80 161 161 GLN GLN E . n C 3 81 ARG 81 162 162 ARG ARG E . n C 3 82 PRO 82 163 163 PRO PRO E . n C 3 83 VAL 83 164 164 VAL VAL E . n C 3 84 PRO 84 165 165 PRO PRO E . n C 3 85 PRO 85 166 166 PRO PRO E . n C 3 86 PRO 86 167 167 PRO PRO E . n C 3 87 PRO 87 168 168 PRO PRO E . n C 3 88 SER 88 169 169 SER SER E . n C 3 89 LEU 89 170 170 LEU LEU E . n C 3 90 GLU 90 171 171 GLU GLU E . n C 3 91 ASN 91 172 172 ASN ASN E . n C 3 92 ILE 92 173 173 ILE ILE E . n C 3 93 TYR 93 174 174 TYR TYR E . n C 3 94 LYS 94 175 175 LYS LYS E . n C 3 95 GLU 95 176 176 GLU GLU E . n C 3 96 LEU 96 177 177 LEU LEU E . n C 3 97 SER 97 178 178 SER SER E . n C 3 98 THR 98 179 179 THR THR E . n C 3 99 ASP 99 180 180 ASP ASP E . n C 3 100 ILE 100 181 181 ILE ILE E . n C 3 101 GLU 101 182 182 GLU GLU E . n C 3 102 ASP 102 183 183 ASP ASP E . n C 3 103 PHE 103 184 184 PHE PHE E . n C 3 104 VAL 104 185 185 VAL VAL E . n C 3 105 HIS 105 186 186 HIS HIS E . n C 3 106 PRO 106 187 187 PRO PRO E . n C 3 107 GLY 107 188 188 GLY GLY E . n C 3 108 HIS 108 189 189 HIS HIS E . n C 3 109 GLY 109 190 190 GLY GLY E . n C 3 110 ASP 110 191 191 ASP ASP E . n C 3 111 LEU 111 192 192 LEU LEU E . n C 3 112 SER 112 193 193 SER SER E . n C 3 113 GLY 113 194 194 GLY GLY E . n C 3 114 TRP 114 195 195 TRP TRP E . n C 3 115 ALA 115 196 196 ALA ALA E . n C 3 116 LYS 116 197 197 LYS LYS E . n C 3 117 GLN 117 198 198 GLN GLN E . n C 3 118 GLY 118 199 199 GLY GLY E . n C 3 119 VAL 119 200 200 VAL VAL E . n C 3 120 LEU 120 201 201 LEU LEU E . n C 3 121 LEU 121 202 202 LEU LEU E . n C 3 122 LEU 122 203 203 LEU LEU E . n C 3 123 ASN 123 204 204 ASN ASN E . n C 3 124 ALA 124 205 205 ALA ALA E . n C 3 125 VAL 125 206 206 VAL VAL E . n C 3 126 LEU 126 207 207 LEU LEU E . n C 3 127 THR 127 208 208 THR THR E . n C 3 128 VAL 128 209 209 VAL VAL E . n C 3 129 ARG 129 210 210 ARG ARG E . n C 3 130 ALA 130 211 211 ALA ALA E . n C 3 131 HIS 131 212 212 HIS HIS E . n C 3 132 GLN 132 213 213 GLN GLN E . n C 3 133 ALA 133 214 214 ALA ALA E . n C 3 134 ASN 134 215 215 ASN ASN E . n C 3 135 SER 135 216 216 SER SER E . n C 3 136 HIS 136 217 217 HIS HIS E . n C 3 137 LYS 137 218 218 LYS LYS E . n C 3 138 GLU 138 219 219 GLU GLU E . n C 3 139 ARG 139 220 220 ARG ARG E . n C 3 140 GLY 140 221 221 GLY GLY E . n C 3 141 TRP 141 222 222 TRP TRP E . n C 3 142 GLU 142 223 223 GLU GLU E . n C 3 143 GLN 143 224 224 GLN GLN E . n C 3 144 PHE 144 225 225 PHE PHE E . n C 3 145 THR 145 226 226 THR THR E . n C 3 146 ASP 146 227 227 ASP ASP E . n C 3 147 ALA 147 228 228 ALA ALA E . n C 3 148 VAL 148 229 229 VAL VAL E . n C 3 149 VAL 149 230 230 VAL VAL E . n C 3 150 SER 150 231 231 SER SER E . n C 3 151 TRP 151 232 232 TRP TRP E . n C 3 152 LEU 152 233 233 LEU LEU E . n C 3 153 ASN 153 234 234 ASN ASN E . n C 3 154 GLN 154 235 235 GLN GLN E . n C 3 155 ASN 155 236 236 ASN ASN E . n C 3 156 SER 156 237 237 SER SER E . n C 3 157 ASN 157 238 238 ASN ASN E . n C 3 158 GLY 158 239 239 GLY GLY E . n C 3 159 LEU 159 240 240 LEU LEU E . n C 3 160 VAL 160 241 241 VAL VAL E . n C 3 161 PHE 161 242 242 PHE PHE E . n C 3 162 LEU 162 243 243 LEU LEU E . n C 3 163 LEU 163 244 244 LEU LEU E . n C 3 164 TRP 164 245 245 TRP TRP E . n C 3 165 GLY 165 246 246 GLY GLY E . n C 3 166 SER 166 247 247 SER SER E . n C 3 167 TYR 167 248 248 TYR TYR E . n C 3 168 ALA 168 249 249 ALA ALA E . n C 3 169 GLN 169 250 250 GLN GLN E . n C 3 170 LYS 170 251 251 LYS LYS E . n C 3 171 LYS 171 252 252 LYS LYS E . n C 3 172 GLY 172 253 253 GLY GLY E . n C 3 173 SER 173 254 254 SER SER E . n C 3 174 ALA 174 255 255 ALA ALA E . n C 3 175 ILE 175 256 256 ILE ILE E . n C 3 176 ASP 176 257 257 ASP ASP E . n C 3 177 ARG 177 258 258 ARG ARG E . n C 3 178 LYS 178 259 259 LYS LYS E . n C 3 179 ARG 179 260 260 ARG ARG E . n C 3 180 HIS 180 261 261 HIS HIS E . n C 3 181 HIS 181 262 262 HIS HIS E . n C 3 182 VAL 182 263 263 VAL VAL E . n C 3 183 LEU 183 264 264 LEU LEU E . n C 3 184 GLN 184 265 265 GLN GLN E . n C 3 185 THR 185 266 266 THR THR E . n C 3 186 ALA 186 267 267 ALA ALA E . n C 3 187 HIS 187 268 268 HIS HIS E . n C 3 188 PRO 188 269 269 PRO PRO E . n C 3 189 SER 189 270 270 SER SER E . n C 3 190 PRO 190 271 271 PRO PRO E . n C 3 191 LEU 191 272 272 LEU LEU E . n C 3 192 SER 192 273 273 SER SER E . n C 3 193 VAL 193 274 274 VAL VAL E . n C 3 194 TYR 194 275 275 TYR TYR E . n C 3 195 ARG 195 276 276 ARG ARG E . n C 3 196 GLY 196 277 277 GLY GLY E . n C 3 197 PHE 197 278 278 PHE PHE E . n C 3 198 PHE 198 279 279 PHE PHE E . n C 3 199 GLY 199 280 280 GLY GLY E . n C 3 200 CYS 200 281 281 CYS CYS E . n C 3 201 ARG 201 282 282 ARG ARG E . n C 3 202 HIS 202 283 283 HIS HIS E . n C 3 203 PHE 203 284 284 PHE PHE E . n C 3 204 SER 204 285 285 SER SER E . n C 3 205 LYS 205 286 286 LYS LYS E . n C 3 206 THR 206 287 287 THR THR E . n C 3 207 ASN 207 288 288 ASN ASN E . n C 3 208 GLU 208 289 289 GLU GLU E . n C 3 209 LEU 209 290 290 LEU LEU E . n C 3 210 LEU 210 291 291 LEU LEU E . n C 3 211 GLN 211 292 292 GLN GLN E . n C 3 212 LYS 212 293 293 LYS LYS E . n C 3 213 SER 213 294 294 SER SER E . n C 3 214 GLY 214 295 295 GLY GLY E . n C 3 215 LYS 215 296 296 LYS LYS E . n C 3 216 LYS 216 297 297 LYS LYS E . n C 3 217 PRO 217 298 298 PRO PRO E . n C 3 218 ILE 218 299 299 ILE ILE E . n C 3 219 ASP 219 300 300 ASP ASP E . n C 3 220 TRP 220 301 301 TRP TRP E . n C 3 221 LYS 221 302 302 LYS LYS E . n C 3 222 GLU 222 303 303 GLU GLU E . n C 3 223 LEU 223 304 304 LEU LEU E . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 URA 1 55 55 URA URA E . E 5 HOH 1 407 407 HOH HOH A . E 5 HOH 2 540 540 HOH HOH A . E 5 HOH 3 575 575 HOH HOH A . E 5 HOH 4 589 589 HOH HOH A . E 5 HOH 5 600 600 HOH HOH A . E 5 HOH 6 607 607 HOH HOH A . E 5 HOH 7 608 608 HOH HOH A . E 5 HOH 8 609 609 HOH HOH A . E 5 HOH 9 619 619 HOH HOH A . E 5 HOH 10 621 621 HOH HOH A . E 5 HOH 11 622 622 HOH HOH A . E 5 HOH 12 645 645 HOH HOH A . E 5 HOH 13 652 652 HOH HOH A . E 5 HOH 14 719 719 HOH HOH A . E 5 HOH 15 754 754 HOH HOH A . E 5 HOH 16 781 781 HOH HOH A . E 5 HOH 17 782 782 HOH HOH A . E 5 HOH 18 818 818 HOH HOH A . E 5 HOH 19 911 911 HOH HOH A . E 5 HOH 20 917 917 HOH HOH A . E 5 HOH 21 918 918 HOH HOH A . E 5 HOH 22 922 922 HOH HOH A . E 5 HOH 23 923 923 HOH HOH A . E 5 HOH 24 953 953 HOH HOH A . E 5 HOH 25 954 954 HOH HOH A . F 5 HOH 1 545 545 HOH HOH B . F 5 HOH 2 587 587 HOH HOH B . F 5 HOH 3 610 610 HOH HOH B . F 5 HOH 4 611 611 HOH HOH B . F 5 HOH 5 612 612 HOH HOH B . F 5 HOH 6 648 648 HOH HOH B . F 5 HOH 7 650 650 HOH HOH B . F 5 HOH 8 783 783 HOH HOH B . F 5 HOH 9 784 784 HOH HOH B . F 5 HOH 10 785 785 HOH HOH B . F 5 HOH 11 786 786 HOH HOH B . F 5 HOH 12 797 797 HOH HOH B . F 5 HOH 13 919 919 HOH HOH B . F 5 HOH 14 947 947 HOH HOH B . F 5 HOH 15 948 948 HOH HOH B . F 5 HOH 16 949 949 HOH HOH B . F 5 HOH 17 951 951 HOH HOH B . F 5 HOH 18 952 952 HOH HOH B . G 5 HOH 1 400 400 HOH HOH E . G 5 HOH 2 402 402 HOH HOH E . G 5 HOH 3 403 403 HOH HOH E . G 5 HOH 4 408 408 HOH HOH E . G 5 HOH 5 410 410 HOH HOH E . G 5 HOH 6 411 411 HOH HOH E . G 5 HOH 7 412 412 HOH HOH E . G 5 HOH 8 420 420 HOH HOH E . G 5 HOH 9 421 421 HOH HOH E . G 5 HOH 10 422 422 HOH HOH E . G 5 HOH 11 423 423 HOH HOH E . G 5 HOH 12 424 424 HOH HOH E . G 5 HOH 13 425 425 HOH HOH E . G 5 HOH 14 427 427 HOH HOH E . G 5 HOH 15 430 430 HOH HOH E . G 5 HOH 16 431 431 HOH HOH E . G 5 HOH 17 432 432 HOH HOH E . G 5 HOH 18 433 433 HOH HOH E . G 5 HOH 19 434 434 HOH HOH E . G 5 HOH 20 435 435 HOH HOH E . G 5 HOH 21 438 438 HOH HOH E . G 5 HOH 22 439 439 HOH HOH E . G 5 HOH 23 440 440 HOH HOH E . G 5 HOH 24 441 441 HOH HOH E . G 5 HOH 25 452 452 HOH HOH E . G 5 HOH 26 473 473 HOH HOH E . G 5 HOH 27 477 477 HOH HOH E . G 5 HOH 28 480 480 HOH HOH E . G 5 HOH 29 522 522 HOH HOH E . G 5 HOH 30 523 523 HOH HOH E . G 5 HOH 31 525 525 HOH HOH E . G 5 HOH 32 527 527 HOH HOH E . G 5 HOH 33 532 532 HOH HOH E . G 5 HOH 34 534 534 HOH HOH E . G 5 HOH 35 543 543 HOH HOH E . G 5 HOH 36 549 549 HOH HOH E . G 5 HOH 37 550 550 HOH HOH E . G 5 HOH 38 551 551 HOH HOH E . G 5 HOH 39 556 556 HOH HOH E . G 5 HOH 40 557 557 HOH HOH E . G 5 HOH 41 563 563 HOH HOH E . G 5 HOH 42 590 590 HOH HOH E . G 5 HOH 43 596 596 HOH HOH E . G 5 HOH 44 597 597 HOH HOH E . G 5 HOH 45 599 599 HOH HOH E . G 5 HOH 46 601 601 HOH HOH E . G 5 HOH 47 602 602 HOH HOH E . G 5 HOH 48 606 606 HOH HOH E . G 5 HOH 49 614 614 HOH HOH E . G 5 HOH 50 615 615 HOH HOH E . G 5 HOH 51 617 617 HOH HOH E . G 5 HOH 52 618 618 HOH HOH E . G 5 HOH 53 626 626 HOH HOH E . G 5 HOH 54 627 627 HOH HOH E . G 5 HOH 55 628 628 HOH HOH E . G 5 HOH 56 629 629 HOH HOH E . G 5 HOH 57 631 631 HOH HOH E . G 5 HOH 58 632 632 HOH HOH E . G 5 HOH 59 633 633 HOH HOH E . G 5 HOH 60 634 634 HOH HOH E . G 5 HOH 61 636 636 HOH HOH E . G 5 HOH 62 637 637 HOH HOH E . G 5 HOH 63 638 638 HOH HOH E . G 5 HOH 64 639 639 HOH HOH E . G 5 HOH 65 640 640 HOH HOH E . G 5 HOH 66 641 641 HOH HOH E . G 5 HOH 67 642 642 HOH HOH E . G 5 HOH 68 643 643 HOH HOH E . G 5 HOH 69 702 702 HOH HOH E . G 5 HOH 70 703 703 HOH HOH E . G 5 HOH 71 704 704 HOH HOH E . G 5 HOH 72 707 707 HOH HOH E . G 5 HOH 73 708 708 HOH HOH E . G 5 HOH 74 709 709 HOH HOH E . G 5 HOH 75 710 710 HOH HOH E . G 5 HOH 76 711 711 HOH HOH E . G 5 HOH 77 712 712 HOH HOH E . G 5 HOH 78 714 714 HOH HOH E . G 5 HOH 79 715 715 HOH HOH E . G 5 HOH 80 716 716 HOH HOH E . G 5 HOH 81 717 717 HOH HOH E . G 5 HOH 82 720 720 HOH HOH E . G 5 HOH 83 721 721 HOH HOH E . G 5 HOH 84 722 722 HOH HOH E . G 5 HOH 85 723 723 HOH HOH E . G 5 HOH 86 724 724 HOH HOH E . G 5 HOH 87 726 726 HOH HOH E . G 5 HOH 88 727 727 HOH HOH E . G 5 HOH 89 728 728 HOH HOH E . G 5 HOH 90 731 731 HOH HOH E . G 5 HOH 91 732 732 HOH HOH E . G 5 HOH 92 733 733 HOH HOH E . G 5 HOH 93 734 734 HOH HOH E . G 5 HOH 94 735 735 HOH HOH E . G 5 HOH 95 736 736 HOH HOH E . G 5 HOH 96 737 737 HOH HOH E . G 5 HOH 97 738 738 HOH HOH E . G 5 HOH 98 739 739 HOH HOH E . G 5 HOH 99 740 740 HOH HOH E . G 5 HOH 100 741 741 HOH HOH E . G 5 HOH 101 742 742 HOH HOH E . G 5 HOH 102 743 743 HOH HOH E . G 5 HOH 103 744 744 HOH HOH E . G 5 HOH 104 745 745 HOH HOH E . G 5 HOH 105 746 746 HOH HOH E . G 5 HOH 106 747 747 HOH HOH E . G 5 HOH 107 748 748 HOH HOH E . G 5 HOH 108 749 749 HOH HOH E . G 5 HOH 109 750 750 HOH HOH E . G 5 HOH 110 751 751 HOH HOH E . G 5 HOH 111 752 752 HOH HOH E . G 5 HOH 112 753 753 HOH HOH E . G 5 HOH 113 756 756 HOH HOH E . G 5 HOH 114 757 757 HOH HOH E . G 5 HOH 115 758 758 HOH HOH E . G 5 HOH 116 759 759 HOH HOH E . G 5 HOH 117 760 760 HOH HOH E . G 5 HOH 118 761 761 HOH HOH E . G 5 HOH 119 762 762 HOH HOH E . G 5 HOH 120 763 763 HOH HOH E . G 5 HOH 121 765 765 HOH HOH E . G 5 HOH 122 766 766 HOH HOH E . G 5 HOH 123 767 767 HOH HOH E . G 5 HOH 124 768 768 HOH HOH E . G 5 HOH 125 769 769 HOH HOH E . G 5 HOH 126 771 771 HOH HOH E . G 5 HOH 127 772 772 HOH HOH E . G 5 HOH 128 773 773 HOH HOH E . G 5 HOH 129 774 774 HOH HOH E . G 5 HOH 130 775 775 HOH HOH E . G 5 HOH 131 776 776 HOH HOH E . G 5 HOH 132 779 779 HOH HOH E . G 5 HOH 133 780 780 HOH HOH E . G 5 HOH 134 787 787 HOH HOH E . G 5 HOH 135 790 790 HOH HOH E . G 5 HOH 136 791 791 HOH HOH E . G 5 HOH 137 792 792 HOH HOH E . G 5 HOH 138 793 793 HOH HOH E . G 5 HOH 139 795 795 HOH HOH E . G 5 HOH 140 796 796 HOH HOH E . G 5 HOH 141 798 798 HOH HOH E . G 5 HOH 142 799 799 HOH HOH E . G 5 HOH 143 800 800 HOH HOH E . G 5 HOH 144 801 801 HOH HOH E . G 5 HOH 145 802 802 HOH HOH E . G 5 HOH 146 804 804 HOH HOH E . G 5 HOH 147 805 805 HOH HOH E . G 5 HOH 148 806 806 HOH HOH E . G 5 HOH 149 807 807 HOH HOH E . G 5 HOH 150 808 808 HOH HOH E . G 5 HOH 151 809 809 HOH HOH E . G 5 HOH 152 810 810 HOH HOH E . G 5 HOH 153 811 811 HOH HOH E . G 5 HOH 154 812 812 HOH HOH E . G 5 HOH 155 813 813 HOH HOH E . G 5 HOH 156 814 814 HOH HOH E . G 5 HOH 157 815 815 HOH HOH E . G 5 HOH 158 816 816 HOH HOH E . G 5 HOH 159 817 817 HOH HOH E . G 5 HOH 160 819 819 HOH HOH E . G 5 HOH 161 820 820 HOH HOH E . G 5 HOH 162 821 821 HOH HOH E . G 5 HOH 163 822 822 HOH HOH E . G 5 HOH 164 823 823 HOH HOH E . G 5 HOH 165 824 824 HOH HOH E . G 5 HOH 166 825 825 HOH HOH E . G 5 HOH 167 826 826 HOH HOH E . G 5 HOH 168 828 828 HOH HOH E . G 5 HOH 169 829 829 HOH HOH E . G 5 HOH 170 830 830 HOH HOH E . G 5 HOH 171 831 831 HOH HOH E . G 5 HOH 172 832 832 HOH HOH E . G 5 HOH 173 835 835 HOH HOH E . G 5 HOH 174 836 836 HOH HOH E . G 5 HOH 175 837 837 HOH HOH E . G 5 HOH 176 838 838 HOH HOH E . G 5 HOH 177 900 900 HOH HOH E . G 5 HOH 178 901 901 HOH HOH E . G 5 HOH 179 902 902 HOH HOH E . G 5 HOH 180 903 903 HOH HOH E . G 5 HOH 181 904 904 HOH HOH E . G 5 HOH 182 905 905 HOH HOH E . G 5 HOH 183 906 906 HOH HOH E . G 5 HOH 184 907 907 HOH HOH E . G 5 HOH 185 908 908 HOH HOH E . G 5 HOH 186 909 909 HOH HOH E . G 5 HOH 187 910 910 HOH HOH E . G 5 HOH 188 912 912 HOH HOH E . G 5 HOH 189 913 913 HOH HOH E . G 5 HOH 190 914 914 HOH HOH E . G 5 HOH 191 915 915 HOH HOH E . G 5 HOH 192 916 916 HOH HOH E . G 5 HOH 193 920 920 HOH HOH E . G 5 HOH 194 921 921 HOH HOH E . G 5 HOH 195 924 924 HOH HOH E . G 5 HOH 196 925 925 HOH HOH E . G 5 HOH 197 926 926 HOH HOH E . G 5 HOH 198 927 927 HOH HOH E . G 5 HOH 199 928 928 HOH HOH E . G 5 HOH 200 929 929 HOH HOH E . G 5 HOH 201 930 930 HOH HOH E . G 5 HOH 202 931 931 HOH HOH E . G 5 HOH 203 932 932 HOH HOH E . G 5 HOH 204 933 933 HOH HOH E . G 5 HOH 205 934 934 HOH HOH E . G 5 HOH 206 935 935 HOH HOH E . G 5 HOH 207 936 936 HOH HOH E . G 5 HOH 208 937 937 HOH HOH E . G 5 HOH 209 938 938 HOH HOH E . G 5 HOH 210 939 939 HOH HOH E . G 5 HOH 211 940 940 HOH HOH E . G 5 HOH 212 941 941 HOH HOH E . G 5 HOH 213 942 942 HOH HOH E . G 5 HOH 214 943 943 HOH HOH E . G 5 HOH 215 944 944 HOH HOH E . G 5 HOH 216 945 945 HOH HOH E . G 5 HOH 217 946 946 HOH HOH E . G 5 HOH 218 950 950 HOH HOH E . G 5 HOH 219 955 955 HOH HOH E . G 5 HOH 220 956 956 HOH HOH E . G 5 HOH 221 957 957 HOH HOH E . G 5 HOH 222 958 958 HOH HOH E . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-05-06 2 'Structure model' 1 1 2008-04-26 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_initial_refinement_model 3 4 'Structure model' struct_conn 4 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 AMoRE phasing . ? 3 X-PLOR refinement 3.851 ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU E 83 ? ? -159.50 -145.23 2 1 GLN E 152 ? ? -93.26 -70.68 3 1 HIS E 154 ? ? -143.20 20.79 4 1 PHE E 158 ? ? 69.64 -6.01 5 1 SER E 273 ? ? -144.21 -11.27 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1SSP 'b-form double helix' 1SSP 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 11 1_555 0.530 -0.344 0.082 -4.885 -8.386 2.019 1 A_DC1:DG31_B A 1 ? B 31 ? 19 1 1 A DT 2 1_555 B DA 10 1_555 -0.063 -0.268 0.215 -2.252 -4.108 -0.303 2 A_DT2:DA30_B A 2 ? B 30 ? 20 1 1 A DG 3 1_555 B DC 9 1_555 -0.573 -0.377 -0.266 -3.271 -2.773 0.549 3 A_DG3:DC29_B A 3 ? B 29 ? 19 1 1 A DT 4 1_555 B DA 8 1_555 -0.260 -0.050 -0.351 15.460 -1.705 3.755 4 A_DT4:DA28_B A 4 ? B 28 ? 20 1 1 A DA 6 1_555 B DT 6 1_555 0.133 -0.149 -0.243 -10.872 -7.700 -0.640 5 A_DA6:DT26_B A 6 ? B 26 ? 20 1 1 A DT 7 1_555 B DA 5 1_555 -0.112 -0.107 -0.012 4.478 -11.074 2.107 6 A_DT7:DA25_B A 7 ? B 25 ? 20 1 1 A DC 8 1_555 B DG 4 1_555 0.319 -0.188 -0.129 1.678 -13.634 0.502 7 A_DC8:DG24_B A 8 ? B 24 ? 19 1 1 A DT 9 1_555 B DA 3 1_555 -0.226 -0.311 -0.012 -2.790 -6.585 -1.010 8 A_DT9:DA23_B A 9 ? B 23 ? 20 1 1 A DT 10 1_555 B DA 2 1_555 0.105 -0.140 -0.071 -0.974 -10.268 4.135 9 A_DT10:DA22_B A 10 ? B 22 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 11 1_555 A DT 2 1_555 B DA 10 1_555 -0.307 0.666 3.254 -0.995 3.104 38.167 0.624 0.342 3.303 4.737 1.519 38.300 1 AA_DC1DT2:DA30DG31_BB A 1 ? B 31 ? A 2 ? B 30 ? 1 A DT 2 1_555 B DA 10 1_555 A DG 3 1_555 B DC 9 1_555 0.540 0.507 3.326 4.086 6.463 37.405 -0.073 -0.290 3.402 9.951 -6.291 38.152 2 AA_DT2DG3:DC29DA30_BB A 2 ? B 30 ? A 3 ? B 29 ? 1 A DG 3 1_555 B DC 9 1_555 A DT 4 1_555 B DA 8 1_555 -0.249 0.248 2.846 -0.426 1.542 31.264 0.206 0.391 2.857 2.859 0.791 31.304 3 AA_DG3DT4:DA28DC29_BB A 3 ? B 29 ? A 4 ? B 28 ? 1 A DA 6 1_555 B DT 6 1_555 A DT 7 1_555 B DA 5 1_555 -0.290 -0.456 2.889 -1.329 -0.276 28.177 -0.878 0.321 2.904 -0.566 2.728 28.209 4 AA_DA6DT7:DA25DT26_BB A 6 ? B 26 ? A 7 ? B 25 ? 1 A DT 7 1_555 B DA 5 1_555 A DC 8 1_555 B DG 4 1_555 0.100 0.046 3.340 1.082 4.712 37.985 -0.535 -0.014 3.324 7.204 -1.655 38.281 5 AA_DT7DC8:DG24DA25_BB A 7 ? B 25 ? A 8 ? B 24 ? 1 A DC 8 1_555 B DG 4 1_555 A DT 9 1_555 B DA 3 1_555 0.730 -0.012 3.335 2.698 3.235 35.920 -0.488 -0.785 3.366 5.224 -4.356 36.159 6 AA_DC8DT9:DA23DG24_BB A 8 ? B 24 ? A 9 ? B 23 ? 1 A DT 9 1_555 B DA 3 1_555 A DT 10 1_555 B DA 2 1_555 0.444 0.068 3.199 1.434 4.536 31.903 -0.670 -0.549 3.194 8.195 -2.590 32.246 7 AA_DT9DT10:DA22DA23_BB A 9 ? B 23 ? A 10 ? B 22 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 URACIL URA 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1AKZ _pdbx_initial_refinement_model.details 'PDB ENTRY 1AKZ' #