data_1U6N # _entry.id 1U6N # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1U6N pdb_00001u6n 10.2210/pdb1u6n/pdb RCSB RCSB023311 ? ? WWPDB D_1000023311 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-08-10 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 5 'Structure model' 1 4 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_struct_assembly 3 4 'Structure model' pdbx_struct_oper_list 4 4 'Structure model' struct_conn 5 5 'Structure model' chem_comp_atom 6 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1U6N _pdbx_database_status.recvd_initial_deposition_date 2004-07-30 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1U6O _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Scholdberg, T.A.' 1 'Merritt, W.K.' 2 'Dean, S.M.' 3 'Kowalcyzk, A.' 4 'Harris, T.M.' 5 'Harris, C.M.' 6 'Lloyd, R.S.' 7 'Stone, M.P.' 8 # _citation.id primary _citation.title ;Structure of an Oligodeoxynucleotide Containing a Butadiene Oxide-Derived N1 Beta-Hydroxyalkyl Deoxyinosine Adduct in the Human N-ras Codon 61 Sequence. ; _citation.journal_abbrev Biochemistry _citation.journal_volume 44 _citation.page_first 3327 _citation.page_last 3337 _citation.year 2005 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15736943 _citation.pdbx_database_id_DOI 10.1021/bi0482452 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Scholdberg, T.A.' 1 ? primary 'Merritt, W.K.' 2 ? primary 'Dean, S.M.' 3 ? primary 'Kowalcyzk, A.' 4 ? primary 'Harris, C.M.' 5 ? primary 'Harris, T.M.' 6 ? primary 'Rizzo, C.J.' 7 ? primary 'Lloyd, R.S.' 8 ? primary 'Stone, M.P.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*GP*GP*AP*CP*(2BD)P*AP*GP*AP*AP*G)-3'" 3487.337 1 ? ? ? ? 2 polymer syn "5'-D(*CP*TP*TP*CP*TP*TP*GP*TP*CP*CP*G)-3'" 3291.145 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DC)(DG)(DG)(DA)(DC)(2BD)(DA)(DG)(DA)(DA)(DG)' CGGACIAGAAG A ? 2 polydeoxyribonucleotide no no '(DC)(DT)(DT)(DC)(DT)(DT)(DG)(DT)(DC)(DC)(DG)' CTTCTTGTCCG B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DG n 1 4 DA n 1 5 DC n 1 6 2BD n 1 7 DA n 1 8 DG n 1 9 DA n 1 10 DA n 1 11 DG n 2 1 DC n 2 2 DT n 2 3 DT n 2 4 DC n 2 5 DT n 2 6 DT n 2 7 DG n 2 8 DT n 2 9 DC n 2 10 DC n 2 11 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2BD 'DNA linking' n ;N1-(1-HYDROXY-3-BUTEN-2(S)-YL)-2'-DEOXYINOSINE MONO PHOSPHORIC ACID ; ? 'C14 H19 N4 O8 P' 402.296 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DA 4 4 4 DA A A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 2BD 6 6 6 2BD DRG A . n A 1 7 DA 7 7 7 DA A A . n A 1 8 DG 8 8 8 DG G A . n A 1 9 DA 9 9 9 DA A A . n A 1 10 DA 10 10 10 DA A A . n A 1 11 DG 11 11 11 DG G A . n B 2 1 DC 1 12 12 DC C B . n B 2 2 DT 2 13 13 DT T B . n B 2 3 DT 3 14 14 DT T B . n B 2 4 DC 4 15 15 DC C B . n B 2 5 DT 5 16 16 DT T B . n B 2 6 DT 6 17 17 DT T B . n B 2 7 DG 7 18 18 DG G B . n B 2 8 DT 8 19 19 DT T B . n B 2 9 DC 9 20 20 DC C B . n B 2 10 DC 10 21 21 DC C B . n B 2 11 DG 11 22 22 DG G B . n # _exptl.entry_id 1U6N _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _database_PDB_matrix.entry_id 1U6N _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1U6N _struct.title ;Solution Structure of an Oligodeoxynucleotide Containing a Butadiene Derived N1 b-Hydroxyalkyl Adduct on Deoxyinosine in the Human N-ras Codon 61 Sequence ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details 'minimized average' # _struct_keywords.entry_id 1U6N _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'butadiene, deoxyinosine, Ras61, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 1U6N 1U6N ? ? ? 2 2 PDB 1U6N 1U6N ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1U6N A 1 ? 11 ? 1U6N 1 ? 11 ? 1 11 2 2 1U6N B 1 ? 11 ? 1U6N 12 ? 22 ? 12 22 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DC 5 "O3'" ? ? ? 1_555 A 2BD 6 P ? ? A DC 5 A 2BD 6 1_555 ? ? ? ? ? ? ? 1.693 ? ? covale2 covale one ? A DC 5 "O3'" ? ? ? 1_555 A 2BD 6 "O5'" ? ? A DC 5 A 2BD 6 1_555 ? ? ? ? ? ? ? 2.008 ? ? covale3 covale both ? A 2BD 6 "O3'" ? ? ? 1_555 A DA 7 P ? ? A 2BD 6 A DA 7 1_555 ? ? ? ? ? ? ? 1.627 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 11 N1 ? ? A DC 1 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 11 O6 ? ? A DC 1 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 11 N2 ? ? A DC 1 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 10 N3 ? ? A DG 2 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 10 O2 ? ? A DG 2 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 10 N4 ? ? A DG 2 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 3 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 3 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 3 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 4 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 4 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 7 N1 ? ? A DC 5 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 7 O6 ? ? A DC 5 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 7 N2 ? ? A DC 5 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 7 B DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 7 B DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 4 N3 ? ? A DG 8 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 4 O2 ? ? A DG 8 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 4 N4 ? ? A DG 8 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B DT 3 N3 ? ? A DA 9 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DT 3 O4 ? ? A DA 9 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 2 N3 ? ? A DA 10 B DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 2 O4 ? ? A DA 10 B DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 11 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 11 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 11 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 11 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 H41 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 DC _pdbx_validate_close_contact.auth_seq_id_1 1 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O6 _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 DG _pdbx_validate_close_contact.auth_seq_id_2 22 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.31 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A DC 5 ? ? "C3'" A DC 5 ? ? 1.563 1.435 0.128 0.013 N 2 1 "O3'" A DC 5 ? ? P A 2BD 6 ? ? 1.693 1.607 0.086 0.012 Y 3 1 "C3'" B DT 17 ? ? "C2'" B DT 17 ? ? 1.466 1.516 -0.050 0.008 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 127.01 108.30 18.71 0.30 N 2 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 112.17 108.30 3.87 0.30 N 3 1 N7 A DG 2 ? ? C8 A DG 2 ? ? N9 A DG 2 ? ? 117.93 113.10 4.83 0.50 N 4 1 C8 A DG 2 ? ? N9 A DG 2 ? ? C4 A DG 2 ? ? 103.70 106.40 -2.70 0.40 N 5 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.10 108.30 2.80 0.30 N 6 1 N7 A DG 3 ? ? C8 A DG 3 ? ? N9 A DG 3 ? ? 117.72 113.10 4.62 0.50 N 7 1 C8 A DG 3 ? ? N9 A DG 3 ? ? C4 A DG 3 ? ? 103.53 106.40 -2.87 0.40 N 8 1 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 110.58 108.30 2.28 0.30 N 9 1 N7 A DA 4 ? ? C8 A DA 4 ? ? N9 A DA 4 ? ? 117.78 113.80 3.98 0.50 N 10 1 C8 A DA 4 ? ? N9 A DA 4 ? ? C4 A DA 4 ? ? 103.27 105.80 -2.53 0.40 N 11 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 112.01 108.30 3.71 0.30 N 12 1 "O3'" A DC 5 ? ? P A 2BD 6 ? ? "O5'" A 2BD 6 ? ? 75.11 104.00 -28.89 1.90 Y 13 1 "O3'" A DC 5 ? ? P A 2BD 6 ? ? OP1 A 2BD 6 ? ? 84.70 105.20 -20.50 2.20 Y 14 1 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 110.86 108.30 2.56 0.30 N 15 1 N7 A DA 7 ? ? C8 A DA 7 ? ? N9 A DA 7 ? ? 117.99 113.80 4.19 0.50 N 16 1 C8 A DA 7 ? ? N9 A DA 7 ? ? C4 A DA 7 ? ? 102.94 105.80 -2.86 0.40 N 17 1 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 112.73 108.30 4.43 0.30 N 18 1 N7 A DG 8 ? ? C8 A DG 8 ? ? N9 A DG 8 ? ? 117.67 113.10 4.57 0.50 N 19 1 C8 A DG 8 ? ? N9 A DG 8 ? ? C4 A DG 8 ? ? 103.53 106.40 -2.87 0.40 N 20 1 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 102.98 108.00 -5.02 0.70 N 21 1 N7 A DA 9 ? ? C8 A DA 9 ? ? N9 A DA 9 ? ? 117.59 113.80 3.79 0.50 N 22 1 C8 A DA 9 ? ? N9 A DA 9 ? ? C4 A DA 9 ? ? 102.73 105.80 -3.07 0.40 N 23 1 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? N9 A DA 10 ? ? 111.20 108.30 2.90 0.30 N 24 1 N7 A DA 10 ? ? C8 A DA 10 ? ? N9 A DA 10 ? ? 117.86 113.80 4.06 0.50 N 25 1 C8 A DA 10 ? ? N9 A DA 10 ? ? C4 A DA 10 ? ? 103.01 105.80 -2.79 0.40 N 26 1 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 112.44 108.30 4.14 0.30 N 27 1 N7 A DG 11 ? ? C8 A DG 11 ? ? N9 A DG 11 ? ? 117.24 113.10 4.14 0.50 N 28 1 C8 A DG 11 ? ? N9 A DG 11 ? ? C4 A DG 11 ? ? 103.63 106.40 -2.77 0.40 N 29 1 "O4'" B DC 12 ? ? "C1'" B DC 12 ? ? N1 B DC 12 ? ? 111.88 108.30 3.58 0.30 N 30 1 C4 B DT 13 ? ? C5 B DT 13 ? ? C6 B DT 13 ? ? 121.68 118.00 3.68 0.60 N 31 1 C6 B DT 13 ? ? C5 B DT 13 ? ? C7 B DT 13 ? ? 119.13 122.90 -3.77 0.60 N 32 1 "O4'" B DT 14 ? ? "C1'" B DT 14 ? ? N1 B DT 14 ? ? 112.80 108.30 4.50 0.30 N 33 1 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 113.80 108.30 5.50 0.30 N 34 1 "O4'" B DT 16 ? ? "C1'" B DT 16 ? ? N1 B DT 16 ? ? 111.33 108.30 3.03 0.30 N 35 1 "O4'" B DG 18 ? ? "C1'" B DG 18 ? ? N9 B DG 18 ? ? 112.03 108.30 3.73 0.30 N 36 1 N7 B DG 18 ? ? C8 B DG 18 ? ? N9 B DG 18 ? ? 117.46 113.10 4.36 0.50 N 37 1 C8 B DG 18 ? ? N9 B DG 18 ? ? C4 B DG 18 ? ? 102.92 106.40 -3.48 0.40 N 38 1 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1 B DT 19 ? ? 112.77 108.30 4.47 0.30 N 39 1 C4 B DT 19 ? ? C5 B DT 19 ? ? C6 B DT 19 ? ? 121.80 118.00 3.80 0.60 N 40 1 C6 B DT 19 ? ? C5 B DT 19 ? ? C7 B DT 19 ? ? 119.12 122.90 -3.78 0.60 N 41 1 "O4'" B DC 20 ? ? "C1'" B DC 20 ? ? N1 B DC 20 ? ? 110.58 108.30 2.28 0.30 N 42 1 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 111.70 108.30 3.40 0.30 N 43 1 N7 B DG 22 ? ? C8 B DG 22 ? ? N9 B DG 22 ? ? 117.58 113.10 4.48 0.50 N 44 1 C8 B DG 22 ? ? N9 B DG 22 ? ? C4 B DG 22 ? ? 102.97 106.40 -3.43 0.40 N # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id "C3'" _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id A _pdbx_validate_chiral.auth_comp_id 2BD _pdbx_validate_chiral.auth_seq_id 6 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details PLANAR _pdbx_validate_chiral.omega . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id 2BD _pdbx_struct_mod_residue.label_seq_id 6 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id 2BD _pdbx_struct_mod_residue.auth_seq_id 6 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DI _pdbx_struct_mod_residue.details ? # _pdbx_nmr_ensemble.entry_id 1U6N _pdbx_nmr_ensemble.conformers_calculated_total_number ? _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria ? # _pdbx_nmr_representative.entry_id 1U6N _pdbx_nmr_representative.conformer_id ? _pdbx_nmr_representative.selection_criteria 'minimized average structure' # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 '2D NOESY' 2 1 1 '2D TOCSY' 3 1 1 DQF-COSY # _pdbx_nmr_refine.entry_id 1U6N _pdbx_nmr_refine.method 'distance geometry,simulated annealing,molecular dynamics,matrix relaxation,torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 2BD P P N N 1 2BD OP1 O N N 2 2BD OP2 O N N 3 2BD OP3 O N N 4 2BD "O5'" O N N 5 2BD "C5'" C N N 6 2BD "C4'" C N R 7 2BD "O4'" O N N 8 2BD "C1'" C N R 9 2BD O6 O N N 10 2BD C6 C N N 11 2BD C5 C Y N 12 2BD N7 N Y N 13 2BD C8 C Y N 14 2BD N9 N Y N 15 2BD C4 C Y N 16 2BD N3 N N N 17 2BD C2 C N N 18 2BD N1 N N N 19 2BD CAN C N S 20 2BD CAL C N N 21 2BD CAM C N N 22 2BD CAO C N N 23 2BD OAP O N N 24 2BD "C2'" C N N 25 2BD "C3'" C N S 26 2BD "O3'" O N N 27 2BD HOP2 H N N 28 2BD HOP3 H N N 29 2BD "H5'" H N N 30 2BD "H5''" H N N 31 2BD "H4'" H N N 32 2BD "H1'" H N N 33 2BD H8 H N N 34 2BD H2 H N N 35 2BD HAN H N N 36 2BD HAL2 H N N 37 2BD HAM1 H N N 38 2BD HAM2 H N N 39 2BD HAO1 H N N 40 2BD HAO2 H N N 41 2BD HAP H N N 42 2BD "H2'" H N N 43 2BD "H2''" H N N 44 2BD "H3'" H N N 45 2BD "HO3'" H N N 46 DA OP3 O N N 47 DA P P N N 48 DA OP1 O N N 49 DA OP2 O N N 50 DA "O5'" O N N 51 DA "C5'" C N N 52 DA "C4'" C N R 53 DA "O4'" O N N 54 DA "C3'" C N S 55 DA "O3'" O N N 56 DA "C2'" C N N 57 DA "C1'" C N R 58 DA N9 N Y N 59 DA C8 C Y N 60 DA N7 N Y N 61 DA C5 C Y N 62 DA C6 C Y N 63 DA N6 N N N 64 DA N1 N Y N 65 DA C2 C Y N 66 DA N3 N Y N 67 DA C4 C Y N 68 DA HOP3 H N N 69 DA HOP2 H N N 70 DA "H5'" H N N 71 DA "H5''" H N N 72 DA "H4'" H N N 73 DA "H3'" H N N 74 DA "HO3'" H N N 75 DA "H2'" H N N 76 DA "H2''" H N N 77 DA "H1'" H N N 78 DA H8 H N N 79 DA H61 H N N 80 DA H62 H N N 81 DA H2 H N N 82 DC OP3 O N N 83 DC P P N N 84 DC OP1 O N N 85 DC OP2 O N N 86 DC "O5'" O N N 87 DC "C5'" C N N 88 DC "C4'" C N R 89 DC "O4'" O N N 90 DC "C3'" C N S 91 DC "O3'" O N N 92 DC "C2'" C N N 93 DC "C1'" C N R 94 DC N1 N N N 95 DC C2 C N N 96 DC O2 O N N 97 DC N3 N N N 98 DC C4 C N N 99 DC N4 N N N 100 DC C5 C N N 101 DC C6 C N N 102 DC HOP3 H N N 103 DC HOP2 H N N 104 DC "H5'" H N N 105 DC "H5''" H N N 106 DC "H4'" H N N 107 DC "H3'" H N N 108 DC "HO3'" H N N 109 DC "H2'" H N N 110 DC "H2''" H N N 111 DC "H1'" H N N 112 DC H41 H N N 113 DC H42 H N N 114 DC H5 H N N 115 DC H6 H N N 116 DG OP3 O N N 117 DG P P N N 118 DG OP1 O N N 119 DG OP2 O N N 120 DG "O5'" O N N 121 DG "C5'" C N N 122 DG "C4'" C N R 123 DG "O4'" O N N 124 DG "C3'" C N S 125 DG "O3'" O N N 126 DG "C2'" C N N 127 DG "C1'" C N R 128 DG N9 N Y N 129 DG C8 C Y N 130 DG N7 N Y N 131 DG C5 C Y N 132 DG C6 C N N 133 DG O6 O N N 134 DG N1 N N N 135 DG C2 C N N 136 DG N2 N N N 137 DG N3 N N N 138 DG C4 C Y N 139 DG HOP3 H N N 140 DG HOP2 H N N 141 DG "H5'" H N N 142 DG "H5''" H N N 143 DG "H4'" H N N 144 DG "H3'" H N N 145 DG "HO3'" H N N 146 DG "H2'" H N N 147 DG "H2''" H N N 148 DG "H1'" H N N 149 DG H8 H N N 150 DG H1 H N N 151 DG H21 H N N 152 DG H22 H N N 153 DT OP3 O N N 154 DT P P N N 155 DT OP1 O N N 156 DT OP2 O N N 157 DT "O5'" O N N 158 DT "C5'" C N N 159 DT "C4'" C N R 160 DT "O4'" O N N 161 DT "C3'" C N S 162 DT "O3'" O N N 163 DT "C2'" C N N 164 DT "C1'" C N R 165 DT N1 N N N 166 DT C2 C N N 167 DT O2 O N N 168 DT N3 N N N 169 DT C4 C N N 170 DT O4 O N N 171 DT C5 C N N 172 DT C7 C N N 173 DT C6 C N N 174 DT HOP3 H N N 175 DT HOP2 H N N 176 DT "H5'" H N N 177 DT "H5''" H N N 178 DT "H4'" H N N 179 DT "H3'" H N N 180 DT "HO3'" H N N 181 DT "H2'" H N N 182 DT "H2''" H N N 183 DT "H1'" H N N 184 DT H3 H N N 185 DT H71 H N N 186 DT H72 H N N 187 DT H73 H N N 188 DT H6 H N N 189 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2BD P OP1 doub N N 1 2BD P OP2 sing N N 2 2BD P OP3 sing N N 3 2BD P "O5'" sing N N 4 2BD OP2 HOP2 sing N N 5 2BD OP3 HOP3 sing N N 6 2BD "O5'" "C5'" sing N N 7 2BD "C5'" "C4'" sing N N 8 2BD "C5'" "H5'" sing N N 9 2BD "C5'" "H5''" sing N N 10 2BD "C4'" "O4'" sing N N 11 2BD "C4'" "C3'" sing N N 12 2BD "C4'" "H4'" sing N N 13 2BD "O4'" "C1'" sing N N 14 2BD "C1'" N9 sing N N 15 2BD "C1'" "C2'" sing N N 16 2BD "C1'" "H1'" sing N N 17 2BD O6 C6 doub N N 18 2BD C6 C5 sing N N 19 2BD C6 N1 sing N N 20 2BD C5 N7 sing Y N 21 2BD C5 C4 doub Y N 22 2BD N7 C8 doub Y N 23 2BD C8 N9 sing Y N 24 2BD C8 H8 sing N N 25 2BD N9 C4 sing Y N 26 2BD C4 N3 sing N N 27 2BD N3 C2 doub N N 28 2BD C2 N1 sing N N 29 2BD C2 H2 sing N N 30 2BD N1 CAN sing N N 31 2BD CAN CAL sing N N 32 2BD CAN CAO sing N N 33 2BD CAN HAN sing N N 34 2BD CAL CAM doub N N 35 2BD CAL HAL2 sing N N 36 2BD CAM HAM1 sing N N 37 2BD CAM HAM2 sing N N 38 2BD CAO OAP sing N N 39 2BD CAO HAO1 sing N N 40 2BD CAO HAO2 sing N N 41 2BD OAP HAP sing N N 42 2BD "C2'" "C3'" sing N N 43 2BD "C2'" "H2'" sing N N 44 2BD "C2'" "H2''" sing N N 45 2BD "C3'" "O3'" sing N N 46 2BD "C3'" "H3'" sing N N 47 2BD "O3'" "HO3'" sing N N 48 DA OP3 P sing N N 49 DA OP3 HOP3 sing N N 50 DA P OP1 doub N N 51 DA P OP2 sing N N 52 DA P "O5'" sing N N 53 DA OP2 HOP2 sing N N 54 DA "O5'" "C5'" sing N N 55 DA "C5'" "C4'" sing N N 56 DA "C5'" "H5'" sing N N 57 DA "C5'" "H5''" sing N N 58 DA "C4'" "O4'" sing N N 59 DA "C4'" "C3'" sing N N 60 DA "C4'" "H4'" sing N N 61 DA "O4'" "C1'" sing N N 62 DA "C3'" "O3'" sing N N 63 DA "C3'" "C2'" sing N N 64 DA "C3'" "H3'" sing N N 65 DA "O3'" "HO3'" sing N N 66 DA "C2'" "C1'" sing N N 67 DA "C2'" "H2'" sing N N 68 DA "C2'" "H2''" sing N N 69 DA "C1'" N9 sing N N 70 DA "C1'" "H1'" sing N N 71 DA N9 C8 sing Y N 72 DA N9 C4 sing Y N 73 DA C8 N7 doub Y N 74 DA C8 H8 sing N N 75 DA N7 C5 sing Y N 76 DA C5 C6 sing Y N 77 DA C5 C4 doub Y N 78 DA C6 N6 sing N N 79 DA C6 N1 doub Y N 80 DA N6 H61 sing N N 81 DA N6 H62 sing N N 82 DA N1 C2 sing Y N 83 DA C2 N3 doub Y N 84 DA C2 H2 sing N N 85 DA N3 C4 sing Y N 86 DC OP3 P sing N N 87 DC OP3 HOP3 sing N N 88 DC P OP1 doub N N 89 DC P OP2 sing N N 90 DC P "O5'" sing N N 91 DC OP2 HOP2 sing N N 92 DC "O5'" "C5'" sing N N 93 DC "C5'" "C4'" sing N N 94 DC "C5'" "H5'" sing N N 95 DC "C5'" "H5''" sing N N 96 DC "C4'" "O4'" sing N N 97 DC "C4'" "C3'" sing N N 98 DC "C4'" "H4'" sing N N 99 DC "O4'" "C1'" sing N N 100 DC "C3'" "O3'" sing N N 101 DC "C3'" "C2'" sing N N 102 DC "C3'" "H3'" sing N N 103 DC "O3'" "HO3'" sing N N 104 DC "C2'" "C1'" sing N N 105 DC "C2'" "H2'" sing N N 106 DC "C2'" "H2''" sing N N 107 DC "C1'" N1 sing N N 108 DC "C1'" "H1'" sing N N 109 DC N1 C2 sing N N 110 DC N1 C6 sing N N 111 DC C2 O2 doub N N 112 DC C2 N3 sing N N 113 DC N3 C4 doub N N 114 DC C4 N4 sing N N 115 DC C4 C5 sing N N 116 DC N4 H41 sing N N 117 DC N4 H42 sing N N 118 DC C5 C6 doub N N 119 DC C5 H5 sing N N 120 DC C6 H6 sing N N 121 DG OP3 P sing N N 122 DG OP3 HOP3 sing N N 123 DG P OP1 doub N N 124 DG P OP2 sing N N 125 DG P "O5'" sing N N 126 DG OP2 HOP2 sing N N 127 DG "O5'" "C5'" sing N N 128 DG "C5'" "C4'" sing N N 129 DG "C5'" "H5'" sing N N 130 DG "C5'" "H5''" sing N N 131 DG "C4'" "O4'" sing N N 132 DG "C4'" "C3'" sing N N 133 DG "C4'" "H4'" sing N N 134 DG "O4'" "C1'" sing N N 135 DG "C3'" "O3'" sing N N 136 DG "C3'" "C2'" sing N N 137 DG "C3'" "H3'" sing N N 138 DG "O3'" "HO3'" sing N N 139 DG "C2'" "C1'" sing N N 140 DG "C2'" "H2'" sing N N 141 DG "C2'" "H2''" sing N N 142 DG "C1'" N9 sing N N 143 DG "C1'" "H1'" sing N N 144 DG N9 C8 sing Y N 145 DG N9 C4 sing Y N 146 DG C8 N7 doub Y N 147 DG C8 H8 sing N N 148 DG N7 C5 sing Y N 149 DG C5 C6 sing N N 150 DG C5 C4 doub Y N 151 DG C6 O6 doub N N 152 DG C6 N1 sing N N 153 DG N1 C2 sing N N 154 DG N1 H1 sing N N 155 DG C2 N2 sing N N 156 DG C2 N3 doub N N 157 DG N2 H21 sing N N 158 DG N2 H22 sing N N 159 DG N3 C4 sing N N 160 DT OP3 P sing N N 161 DT OP3 HOP3 sing N N 162 DT P OP1 doub N N 163 DT P OP2 sing N N 164 DT P "O5'" sing N N 165 DT OP2 HOP2 sing N N 166 DT "O5'" "C5'" sing N N 167 DT "C5'" "C4'" sing N N 168 DT "C5'" "H5'" sing N N 169 DT "C5'" "H5''" sing N N 170 DT "C4'" "O4'" sing N N 171 DT "C4'" "C3'" sing N N 172 DT "C4'" "H4'" sing N N 173 DT "O4'" "C1'" sing N N 174 DT "C3'" "O3'" sing N N 175 DT "C3'" "C2'" sing N N 176 DT "C3'" "H3'" sing N N 177 DT "O3'" "HO3'" sing N N 178 DT "C2'" "C1'" sing N N 179 DT "C2'" "H2'" sing N N 180 DT "C2'" "H2''" sing N N 181 DT "C1'" N1 sing N N 182 DT "C1'" "H1'" sing N N 183 DT N1 C2 sing N N 184 DT N1 C6 sing N N 185 DT C2 O2 doub N N 186 DT C2 N3 sing N N 187 DT N3 C4 sing N N 188 DT N3 H3 sing N N 189 DT C4 O4 doub N N 190 DT C4 C5 sing N N 191 DT C5 C7 sing N N 192 DT C5 C6 doub N N 193 DT C7 H71 sing N N 194 DT C7 H72 sing N N 195 DT C7 H73 sing N N 196 DT C6 H6 sing N N 197 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1U6N 'double helix' 1U6N 'b-form double helix' 1U6N 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 11 1_555 0.307 -0.543 0.252 1.399 11.926 -9.777 1 A_DC1:DG22_B A 1 ? B 22 ? 19 1 1 A DG 2 1_555 B DC 10 1_555 0.386 -0.292 0.678 15.575 -12.715 -11.110 2 A_DG2:DC21_B A 2 ? B 21 ? 19 1 1 A DG 3 1_555 B DC 9 1_555 -0.143 -0.130 -0.252 -20.997 -22.807 -3.179 3 A_DG3:DC20_B A 3 ? B 20 ? 19 1 1 A DA 4 1_555 B DT 8 1_555 0.151 0.077 0.916 -1.718 -2.760 -2.810 4 A_DA4:DT19_B A 4 ? B 19 ? 20 1 1 A DC 5 1_555 B DG 7 1_555 -0.058 0.172 -0.127 3.167 -17.338 0.306 5 A_DC5:DG18_B A 5 ? B 18 ? 19 1 1 A DA 7 1_555 B DT 5 1_555 0.106 -0.273 0.956 0.854 -15.286 -13.929 6 A_DA7:DT16_B A 7 ? B 16 ? 20 1 1 A DG 8 1_555 B DC 4 1_555 0.099 -0.305 1.231 9.527 -4.531 -6.586 7 A_DG8:DC15_B A 8 ? B 15 ? 19 1 1 A DA 9 1_555 B DT 3 1_555 0.484 0.050 0.192 9.272 -4.594 -4.791 8 A_DA9:DT14_B A 9 ? B 14 ? 20 1 1 A DA 10 1_555 B DT 2 1_555 0.071 -0.054 -0.363 -7.682 -24.868 -7.852 9 A_DA10:DT13_B A 10 ? B 13 ? 20 1 1 A DG 11 1_555 B DC 1 1_555 0.016 -0.053 -0.165 -5.662 6.938 -2.277 10 A_DG11:DC12_B A 11 ? B 12 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 11 1_555 A DG 2 1_555 B DC 10 1_555 0.360 -0.765 3.701 0.722 -4.098 20.390 -0.077 -0.638 3.789 -11.422 -2.013 20.806 1 AA_DC1DG2:DC21DG22_BB A 1 ? B 22 ? A 2 ? B 21 ? 1 A DG 2 1_555 B DC 10 1_555 A DG 3 1_555 B DC 9 1_555 0.350 -0.931 3.906 9.511 2.748 39.499 -1.705 0.761 3.816 3.990 -13.811 40.673 2 AA_DG2DG3:DC20DC21_BB A 2 ? B 21 ? A 3 ? B 20 ? 1 A DG 3 1_555 B DC 9 1_555 A DA 4 1_555 B DT 8 1_555 0.407 0.041 2.477 -10.832 -3.359 42.010 0.298 -1.330 2.299 -4.586 14.788 43.447 3 AA_DG3DA4:DT19DC20_BB A 3 ? B 20 ? A 4 ? B 19 ? 1 A DA 4 1_555 B DT 8 1_555 A DC 5 1_555 B DG 7 1_555 -0.663 0.579 3.246 2.343 7.596 32.160 -0.274 1.561 3.240 13.457 -4.150 33.102 4 AA_DA4DC5:DG18DT19_BB A 4 ? B 19 ? A 5 ? B 18 ? 1 A DA 7 1_555 B DT 5 1_555 A DG 8 1_555 B DC 4 1_555 0.415 -0.975 3.341 0.125 -19.498 29.338 1.652 -0.667 3.336 -34.155 -0.220 35.108 5 AA_DA7DG8:DC15DT16_BB A 7 ? B 16 ? A 8 ? B 15 ? 1 A DG 8 1_555 B DC 4 1_555 A DA 9 1_555 B DT 3 1_555 -0.708 -1.576 3.595 -0.352 3.940 30.970 -3.730 1.244 3.381 7.340 0.656 31.216 6 AA_DG8DA9:DT14DC15_BB A 8 ? B 15 ? A 9 ? B 14 ? 1 A DA 9 1_555 B DT 3 1_555 A DA 10 1_555 B DT 2 1_555 -0.506 0.081 4.029 1.448 7.543 35.994 -1.137 1.045 3.942 12.038 -2.310 36.778 7 AA_DA9DA10:DT13DT14_BB A 9 ? B 14 ? A 10 ? B 13 ? 1 A DA 10 1_555 B DT 2 1_555 A DG 11 1_555 B DC 1 1_555 0.056 -0.477 3.192 -7.691 -1.673 30.791 -0.570 -1.484 3.108 -3.088 14.196 31.758 8 AA_DA10DG11:DC12DT13_BB A 10 ? B 13 ? A 11 ? B 12 ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model DMX _pdbx_nmr_spectrometer.field_strength 800 # _atom_sites.entry_id 1U6N _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_